AlfalfaGEDB | Msa0414140

M. sativa cultivar zhongmu-4 / Msa0414140

KEGG: K07198|K12761
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414140	XP_013460402.1	96.575	438	15	0	1	438	1	438	0.0	850

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414140	sp\|Q9C562\|CIPKA_ARATH	62.528	451	156	4	6	444	4	453	0.0	590

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414140	A0A072V8E2	96.575	438	15	0	1	438	1	438	0.0	850

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005270	Msa0414140	0.809558	1.783033e-50	-8.615850e-47
Msa0006110	Msa0414140	0.814337	1.622253e-51	-8.615850e-47
Msa0007440	Msa0414140	0.810471	1.134093e-50	-8.615850e-47
Msa0012710	Msa0414140	0.824510	7.764308e-54	-8.615850e-47
Msa0015090	Msa0414140	0.836007	1.204240e-56	-8.615850e-47
Msa0017320	Msa0414140	0.801254	9.819036e-49	-8.615850e-47
Msa0021210	Msa0414140	0.817619	3.002172e-52	-8.615850e-47
Msa0023330	Msa0414140	0.849429	3.253181e-60	-8.615850e-47
Msa0026630	Msa0414140	0.801847	7.423890e-49	-8.615850e-47
Msa0026910	Msa0414140	0.807859	4.114296e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414140	MtrunA17_Chr3g0107011	96.575	438	15	0	1	438	1	438	0.0	850
Msa0414140	MtrunA17_Chr5g0432471	69.365	457	115	2	7	441	5	458	0.0	647
Msa0414140	MtrunA17_Chr7g0244521	64.384	438	147	4	6	438	4	437	0.0	582
Msa0414140	MtrunA17_Chr4g0013131	61.937	444	159	4	8	448	6	442	0.0	559
Msa0414140	MtrunA17_Chr2g0284011	53.348	448	191	7	6	443	4	443	2.35e-168	481
Msa0414140	MtrunA17_Chr8g0379091	52.743	474	191	8	8	454	20	487	2.67e-166	478
Msa0414140	MtrunA17_Chr2g0284031	52.784	449	186	6	7	435	24	466	2.37e-165	476
Msa0414140	MtrunA17_Chr1g0150321	53.061	441	184	5	4	441	3	423	6.83e-157	451
Msa0414140	MtrunA17_Chr3g0114511	51.678	447	195	4	1	445	19	446	3.39e-155	447
Msa0414140	MtrunA17_Chr8g0346081	52.214	429	187	9	13	436	16	431	1.15e-152	441

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414140	AT5G58380.1	62.528	451	156	4	6	444	4	453	0.0	590
Msa0414140	AT5G07070.1	61.915	449	156	2	6	447	4	444	0.0	555
Msa0414140	AT5G45820.1	60.092	436	153	8	9	440	7	425	0.0	521
Msa0414140	AT5G01810.1	55.069	434	179	3	6	439	4	421	8.84e-169	481
Msa0414140	AT5G01810.2	55.069	434	179	3	6	439	4	421	8.84e-169	481
Msa0414140	AT4G30960.1	55.658	433	178	3	7	437	17	437	3.16e-168	481
Msa0414140	AT4G18700.1	53.968	441	184	5	9	435	21	456	1.15e-165	476
Msa0414140	AT5G25110.1	53.007	449	198	4	2	446	31	470	1.95e-165	475
Msa0414140	AT5G10930.1	53.483	445	194	6	9	448	7	443	1.56e-164	471
Msa0414140	AT5G45810.1	52.477	444	187	7	9	434	23	460	9.50e-159	458

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Find 82 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTAAGGAACATTGT+TGG	0.442388	3_2:+59119383	Msa0414140:CDS
AAAATCAAATGGAGATACAT+TGG	0.502013	3_2:+59119834	Msa0414140:CDS
AAACTAGAGGGATTTGATGA+AGG	0.502350	3_2:+59119739	Msa0414140:CDS
AAAGCAGAACTAAAATGTCC+CGG	0.636037	3_2:+59119286	Msa0414140:CDS
AAAGCCGATATTTGGTCTTG+TGG	0.526458	3_2:+59119184	Msa0414140:CDS
AAATGACGGTCTAGAAGTCG+AGG	0.636273	3_2:+59119501	Msa0414140:CDS
AAGACATTGCTAAACAACTG+AGG	0.703281	3_2:+59119683	Msa0414140:CDS
AAGGATAAAGTTATGAGAAC+TGG	0.427549	3_2:+59118743	Msa0414140:CDS
AATCTGAAGGTTTCTGATTT+TGG	0.107629	3_2:+59119049	Msa0414140:CDS
AATGTTCTGTTGGATGAAAA+TGG	0.300239	3_2:+59119025	Msa0414140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGATAAAGTTATGAGAAC+TGG	+	chr3_2:59118743-59118762	Msa0414140:CDS	30.0%
TATCTGTTATGAAATTGGCT+CGG	+	chr3_2:59118792-59118811	Msa0414140:CDS	30.0%
AATGTTCTGTTGGATGAAAA+TGG	+	chr3_2:59119025-59119044	Msa0414140:CDS	30.0%
ATGTTCTGTTGGATGAAAAT+GGG	+	chr3_2:59119026-59119045	Msa0414140:CDS	30.0%
TATTCCACAAGACCAAATAT+CGG	-	chr3_2:59119191-59119210	None:intergenic	30.0%
ATCAAATTTGGGTCATGAAA+AGG	-	chr3_2:59119244-59119263	None:intergenic	30.0%
CAAGCTATTAAGCGATATAT+TGG	+	chr3_2:59119330-59119349	Msa0414140:CDS	30.0%
TGAAAGAGAGATGATATCAA+AGG	-	chr3_2:59119563-59119582	None:intergenic	30.0%
GTTGAGGTGAAAAAATCAAA+TGG	+	chr3_2:59119823-59119842	Msa0414140:CDS	30.0%
TGCTCTTCAAGATATTGTTT+GGG	+	chr3_2:59119891-59119910	Msa0414140:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	59118605	59119987	59118605	ID=Msa0414140;Name=Msa0414140
chr3_2	mRNA	59118605	59119987	59118605	ID=Msa0414140-mRNA-1;Parent=Msa0414140;Name=Msa0414140-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|460
chr3_2	exon	59118605	59119987	59118605	ID=Msa0414140-mRNA-1:exon:12306;Parent=Msa0414140-mRNA-1
chr3_2	CDS	59118605	59119987	59118605	ID=Msa0414140-mRNA-1:cds;Parent=Msa0414140-mRNA-1

Gene Sequence

>Msa0414140

ATGGAGAGTGATATGAAAACGAATGTGTTAATGGAACGATACGAGTTAGGAAGGTTACTTGGTCAGGGAACGTTTGGAAAGGTTTACTATGCACGGAGTACGGTAACTAACCAGAGTGTCGCCATTAAAGCGATTGAAAAGGATAAAGTTATGAGAACTGGTCAAGTTGATCGAATCAAGCGTGAAATATCTGTTATGAAATTGGCTCGGCATCCGAATATTATACAACTTTTTGAGGTTATGGCAACAAAGAGTAAGATTTACTTTGTTATGGAGTATGCAAAAGGTGGTGAGCTTTTCGACAAGGTGTGTAAAGGAAGACTCAAAGAAAAAGTTGCGCACAGATATTTTAAGCAGTTGATCAATGCGGTTGATTTTTGTCACAGTAGAGGTGTGTATCATCGAGACATTAAGCCAGAAAATGTTCTGTTGGATGAAAATGGGAATCTGAAGGTTTCTGATTTTGGGTTAAGTGCTCTTGTGGAATCACATCAACAGAATATCATCCTCCGTACGCCTTGTGGCACTCCGGCTTATGTTGCTCCAGAAGTCATCAAAAGGAAAGGGTATGACGGTGCCAAAGCCGATATTTGGTCTTGTGGAATAGTTCTGTTTGTTTTATTGGCAGGTTATCTTCCTTTTCATGACCCAAATTTGATAGAGATGTATAGGAAGATACACAAAGCAGAACTAAAATGTCCCGGTTGGTTTCGACCGGAAGTGTGCAAGCTATTAAGCGATATATTGGATCCTAATCCCAACACTAGGATTTCCATAGAAAAGATTAAGGAACATTGTTGGTTTAAAAATGAACCAACTTCTAGAAGCAAAAAACCACTGTTGGAAAACAACACTGTCTCTTCTTCGAGTTCAGTTGTTTCTGATCAAAATGATGAAAATGACGGTCTAGAAGTCGAGGTAAAGGAAGAGTCGGTCGTGCCTATCAGTATTAATGCCTTTGATATCATCTCTCTTTCAGCTAGTTTTGATCTTTCAAGATTCTTTAAAGACGATGTACAGAAAAGAGAAGCGAGGTTTAGTTCAAAACTACCTGCATCAACCATCATCTCGAAGATAGAAGACATTGCTAAACAACTGAGGATGAAAATTAAGAAAAAAGCTGCTGGTTTGTTGAAACTAGAGGGATTTGATGAAGGTAGGAAAGGGGTTTTATCCATTGATGCGGAGATTTTTGAGGTTACTCCTCATTTCCATTTAGTTGAGGTGAAAAAATCAAATGGAGATACATTGGAATATCAGAAAATATTGAAAGAGGATATAAGACCTGCTCTTCAAGATATTGTTTGGGTGTGGCAAAGTGACCAACAACAGCAATCACAACAGCCAGATCAACAGCTTCAGATACATGACCAGCAGCTATAA

Protein sequence

>Msa0414140

MESDMKTNVLMERYELGRLLGQGTFGKVYYARSTVTNQSVAIKAIEKDKVMRTGQVDRIKREISVMKLARHPNIIQLFEVMATKSKIYFVMEYAKGGELFDKVCKGRLKEKVAHRYFKQLINAVDFCHSRGVYHRDIKPENVLLDENGNLKVSDFGLSALVESHQQNIILRTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGYLPFHDPNLIEMYRKIHKAELKCPGWFRPEVCKLLSDILDPNPNTRISIEKIKEHCWFKNEPTSRSKKPLLENNTVSSSSSVVSDQNDENDGLEVEVKEESVVPISINAFDIISLSASFDLSRFFKDDVQKREARFSSKLPASTIISKIEDIAKQLRMKIKKKAAGLLKLEGFDEGRKGVLSIDAEIFEVTPHFHLVEVKKSNGDTLEYQKILKEDIRPALQDIVWVWQSDQQQQSQQPDQQLQIHDQQL*