AlfalfaGEDB | Msa0749440

M. sativa cultivar zhongmu-4 / Msa0749440

KEGG: K01090
GO: GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050408 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00498.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0749440	XP_003610676.2	97.114	589	10	3	1	588	27	609	0.0	1166

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0749440	sp\|P46014\|P2C70_ARATH	54.437	586	239	11	8	578	7	579	0.0	591

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0749440	A0A396HIW4	97.114	589	10	3	1	588	27	609	0.0	1166

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0749440	0.808623	2.827861e-50	-8.615850e-47
Msa0003890	Msa0749440	0.814114	1.816989e-51	-8.615850e-47
Msa0005270	Msa0749440	0.847118	1.415669e-59	-8.615850e-47
Msa0006110	Msa0749440	0.833325	5.691310e-56	-8.615850e-47
Msa0007440	Msa0749440	0.850243	1.925994e-60	-8.615850e-47
Msa0007470	Msa0749440	0.801493	8.773986e-49	-8.615850e-47
Msa0007990	Msa0749440	0.827506	1.506604e-54	-8.615850e-47
Msa0008220	Msa0749440	0.832486	9.197879e-56	-8.615850e-47
Msa0010490	Msa0749440	0.823848	1.110344e-53	-8.615850e-47
Msa0010500	Msa0749440	0.814635	1.393300e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0749440	MtrunA17_Chr5g0394181	97.114	589	10	3	1	588	27	609	0.0	1166
Msa0749440	MtrunA17_Chr1g0150451	29.167	360	180	16	228	576	28	323	5.71e-25	106
Msa0749440	MtrunA17_Chr3g0136711	31.488	289	150	13	299	576	29	280	2.51e-24	103
Msa0749440	MtrunA17_Chr5g0407161	31.359	287	154	12	311	576	81	345	1.47e-18	87.8
Msa0749440	MtrunA17_Chr1g0194191	29.434	265	153	11	329	580	110	353	5.69e-18	86.3
Msa0749440	MtrunA17_Chr3g0126511	32.895	228	118	13	318	533	102	306	4.59e-16	80.1
Msa0749440	MtrunA17_Chr2g0293811	28.519	270	157	12	330	584	93	341	1.37e-14	75.9
Msa0749440	MtrunA17_Chr4g0050381	28.000	275	158	11	312	576	32	276	8.78e-14	72.0
Msa0749440	MtrunA17_Chr5g0426141	29.091	275	155	13	312	576	37	281	1.47e-13	71.6
Msa0749440	MtrunA17_Chr7g0225501	27.208	283	170	11	313	578	58	321	3.85e-12	68.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0749440	AT5G19280.1	54.437	586	239	11	8	578	7	579	0.0	591
Msa0749440	AT5G19280.2	53.523	596	239	12	8	578	7	589	0.0	583
Msa0749440	AT4G31750.2	31.228	285	148	14	303	576	32	279	1.80e-22	98.6
Msa0749440	AT4G31750.1	30.877	285	149	13	303	576	32	279	2.47e-22	98.6
Msa0749440	AT4G31750.3	30.877	285	149	13	303	576	32	279	2.47e-22	98.6
Msa0749440	AT5G10740.1	30.000	270	147	12	318	576	41	279	8.49e-21	94.7
Msa0749440	AT5G10740.2	30.000	270	147	12	318	576	41	279	8.49e-21	94.7
Msa0749440	AT5G24940.1	29.825	285	152	14	303	576	32	279	4.02e-19	90.9
Msa0749440	AT1G22280.3	29.286	280	166	10	306	576	30	286	3.79e-17	82.8
Msa0749440	AT1G43900.1	29.197	274	145	13	318	577	131	369	1.43e-16	82.4

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Find 118 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCGTCCCAACGTCAA+CGG	0.567220	5_2:-2986565	None:intergenic
AAAATCTAAGAATATTATAG+AGG	0.520261	5_2:-2991475	None:intergenic
AAATGGGAGCTGGTGGATAT+GGG	0.453327	5_2:+2986768	Msa0749440:CDS
AAGATACTAGAAATTATCTC+GGG	0.558298	5_2:-2989840	None:intergenic
AAGCTCTTGTTCATAAACAA+AGG	0.543771	5_2:+2986131	Msa0749440:CDS
AATCATCATCACATCCCCTT+TGG	0.469153	5_2:+2988381	Msa0749440:CDS
AATGGAGATGTTATAACACT+TGG	0.561928	5_2:+2986879	Msa0749440:CDS
AATTCAACAGTGTTCCATTC+AGG	0.321276	5_2:-2986794	None:intergenic
ACAATGGTCTGTACAATCGA+CGG	0.658265	5_2:+2986528	Msa0749440:CDS
ACAGGTGAACCATTGAAAGA+TGG	0.511302	5_2:+2990727	Msa0749440:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGTTTGAAGAGAAAGAAA+AGG	-	chr5_2:2985833-2985852	None:intergenic	30.0%
AAGCTCTTGTTCATAAACAA+AGG	+	chr5_2:2986131-2986150	Msa0749440:CDS	30.0%
TCATTTCGAAAATCGTTCTT+TGG	-	chr5_2:2986310-2986329	None:intergenic	30.0%
TAAAGGATAATGAAGTTTCG+GGG	+	chr5_2:2986605-2986624	Msa0749440:CDS	30.0%
AATGGAGATGTTATAACACT+TGG	+	chr5_2:2986879-2986898	Msa0749440:CDS	30.0%
CTTTGACATTTGTCCTTAAT+TGG	+	chr5_2:2987348-2987367	Msa0749440:intron	30.0%
ATTCCTTAAACAGTGACTTT+CGG	-	chr5_2:2987501-2987520	None:intergenic	30.0%
TAAAAGGGATTCAACGTTAA+AGG	+	chr5_2:2988065-2988084	Msa0749440:intron	30.0%
AAAAGGGATTCAACGTTAAA+GGG	+	chr5_2:2988066-2988085	Msa0749440:intron	30.0%
ACAGATAAAACTAACTCTAC+AGG	-	chr5_2:2988200-2988219	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	2985655	2991743	2985655	ID=Msa0749440;Name=Msa0749440
chr5_2	mRNA	2985655	2991743	2985655	ID=Msa0749440-mRNA-1;Parent=Msa0749440;Name=Msa0749440-mRNA-1;_AED=0.18;_eAED=0.18;_QI=104\|1\|1\|1\|1\|1\|12\|207\|588
chr5_2	exon	2985655	2985893	2985655	ID=Msa0749440-mRNA-1:exon:1020;Parent=Msa0749440-mRNA-1
chr5_2	exon	2985974	2986373	2985974	ID=Msa0749440-mRNA-1:exon:1021;Parent=Msa0749440-mRNA-1
chr5_2	exon	2986482	2986657	2986482	ID=Msa0749440-mRNA-1:exon:1022;Parent=Msa0749440-mRNA-1
chr5_2	exon	2986762	2986920	2986762	ID=Msa0749440-mRNA-1:exon:1023;Parent=Msa0749440-mRNA-1
chr5_2	exon	2988363	2988506	2988363	ID=Msa0749440-mRNA-1:exon:1024;Parent=Msa0749440-mRNA-1
chr5_2	exon	2988609	2988670	2988609	ID=Msa0749440-mRNA-1:exon:1025;Parent=Msa0749440-mRNA-1
chr5_2	exon	2989833	2989968	2989833	ID=Msa0749440-mRNA-1:exon:1026;Parent=Msa0749440-mRNA-1
chr5_2	exon	2990151	2990245	2990151	ID=Msa0749440-mRNA-1:exon:1027;Parent=Msa0749440-mRNA-1
chr5_2	exon	2990651	2990766	2990651	ID=Msa0749440-mRNA-1:exon:1028;Parent=Msa0749440-mRNA-1
chr5_2	exon	2990860	2990989	2990860	ID=Msa0749440-mRNA-1:exon:1029;Parent=Msa0749440-mRNA-1
chr5_2	exon	2991231	2991285	2991231	ID=Msa0749440-mRNA-1:exon:1030;Parent=Msa0749440-mRNA-1
chr5_2	exon	2991378	2991743	2991378	ID=Msa0749440-mRNA-1:exon:1031;Parent=Msa0749440-mRNA-1
chr5_2	five_prime_UTR	2985655	2985758	2985655	ID=Msa0749440-mRNA-1:five_prime_utr;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2985759	2985893	2985759	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2985974	2986373	2985974	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2986482	2986657	2986482	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2986762	2986920	2986762	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2988363	2988506	2988363	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2988609	2988670	2988609	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2989833	2989968	2989833	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2990151	2990245	2990151	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2990651	2990766	2990651	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2990860	2990989	2990860	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2991231	2991285	2991231	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	CDS	2991378	2991536	2991378	ID=Msa0749440-mRNA-1:cds;Parent=Msa0749440-mRNA-1
chr5_2	three_prime_UTR	2991537	2991743	2991537	ID=Msa0749440-mRNA-1:three_prime_utr;Parent=Msa0749440-mRNA-1

Gene Sequence

>Msa0749440

ATGGAACAAACGATGTTACAAAACATTGTGACTGTGCTTCTTCTCCTTATGCTTCTTCTCATCTTCATTTTCCTTTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTTCTCGTTTTCGTTCTTTCATCAAGGGTTCTGCTGATGAATTAGAGAGGCCATTAGTTGAAGATAATCAAAATATTAGTAATAATAATAATAATAATGGATTATTATCTAGGGATTATGATCTTGAAGGTGCGTGTTATTATCCCAATGAAGTTAATTTTCGTTCTCCAAGAACACATGGACAAGCTCTTGTTCATAAACAAAGGTTTCATAATGTTCCTGTTTCCAATAATTTTCAACAAGGTGGCGGTGTTGTTGCTGATAGTTTGGTTGTTGATGTAATCACTGAGGATGTTGTTGATCATCATGTTGGTGAAGTTGTTAAGGTTGTTGATCATGCTCCTGTTTTAGCTCAAATTCCAAAGAACGATTTTCGAAATGATACTAGATTGCAGGATTTTGTGGAGAAAGATATCAGCGATCAAAGAAGTTGTCTTACTCTTGAGGTTATCAGTGGTCCTTCTCGCGGGCAACAATGGTCTGTACAATCGACGGAGACTTCTCGTTTACCGTTGACGTTGGGACGGATTTTTCCTAGTGATTTTTTGATAAAGGATAATGAAGTTTCGGGGAAGCATGCTTTGATCAAGTGGAATTTGGATACGATGAAATGGGAGCTGGTGGATATGGGTAGCCTGAATGGAACACTGTTGAATTCTAAGTCAATCAATCGTCTGGACACTGAACGTAGGCATTGGGGAGATCCGATGAATCTTGCTAATGGAGATGTTATAACACTTGGAACAACATCGAAAATAATTGTTCATATCACTTCACAAAATCATCATCACATCCCCTTTGGAGTTGGTATGGCATCAGATCCCATGTCTTTGCGTCGAGGAGGAAAAAAACTTCCTATGGAGGATGTTTGCTACTATCAATGGCCTCTACCTGGACTGGATAAGTTTGGACTTTTTGGCATTTGTGACGGGCACAGTGGCGATGCGGCTGCCAAATCTGCTAGCAAACTTTTTCCCGAGATAATTTCTAGTATCTTGTCGGATTCATCAAGAAGGGAGAGGGTTTTGTTACTTCGTGATGCTTCTGATATTCTTCGAGATGCATTTTCTCAAACAGAAGCAGGCATAAATAACTCTTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGGCTGACCGCGATGATAATTTCTATGCACAATGTGCAAATGTTGGAGATTCTGAATGCATTATGAGTGTTGATGGCCAACAAATCAAGATGACAGAAGATCACAAGATATCAAACCATTCTGAAAGACTCAGAATGGAAGGGACAGGTGAACCATTGAAAGATGGGGAAACACGGCTATATGGTATAAATCTTGCAAGGATGCTTGGTGACAAATTCCTAAAACAGCAGGATTCCCGGTTCAGTTCAGAACCTTATATAAGTGAGGCTGTGCATATTCACCAATCAAGCAAGGCTTTTGCTCTTCTGGCTAGTGATGGGTTATGGGATGTCGTCAGTTCGAAGAAGGCGATTCAGCTAGTGCTTCAGGCGAGGGAGCGGTACAATACAGATAGAGAGAATACAGCAGAAAAGATTGCTAGTTTGTTGTTGAGTGAAGCTAGAACAAACAAAACCAAGGATAATACCTCTATAATATTCTTAGATTTTGATAGCTTCGATAGATTATCTTGTAAAGTTGAATCCTAG

Protein sequence

>Msa0749440

MEQTMLQNIVTVLLLLMLLLIFIFLFFLFKPWRFFFSSRFRSFIKGSADELERPLVEDNQNISNNNNNNGLLSRDYDLEGACYYPNEVNFRSPRTHGQALVHKQRFHNVPVSNNFQQGGGVVADSLVVDVITEDVVDHHVGEVVKVVDHAPVLAQIPKNDFRNDTRLQDFVEKDISDQRSCLTLEVISGPSRGQQWSVQSTETSRLPLTLGRIFPSDFLIKDNEVSGKHALIKWNLDTMKWELVDMGSLNGTLLNSKSINRLDTERRHWGDPMNLANGDVITLGTTSKIIVHITSQNHHHIPFGVGMASDPMSLRRGGKKLPMEDVCYYQWPLPGLDKFGLFGICDGHSGDAAAKSASKLFPEIISSILSDSSRRERVLLLRDASDILRDAFSQTEAGINNSYEGCTATVLLVWADRDDNFYAQCANVGDSECIMSVDGQQIKMTEDHKISNHSERLRMEGTGEPLKDGETRLYGINLARMLGDKFLKQQDSRFSSEPYISEAVHIHQSSKAFALLASDGLWDVVSSKKAIQLVLQARERYNTDRENTAEKIASLLLSEARTNKTKDNTSIIFLDFDSFDRLSCKVES*