AlfalfaGEDB | Msa0429200

M. sativa cultivar zhongmu-4 / Msa0429200

KEGG: K11855
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564
PFAM: PF01753.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429200	XP_003602929.1	96.061	1117	42	2	1	1116	1	1116	0.0	2040

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429200	sp\|Q9SB51\|UBP16_ARATH	44.306	1045	468	32	22	1029	21	988	0.0	660

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429200	G7J555	96.061	1117	42	2	1	1116	1	1116	0.0	2040

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005620	Msa0429200	0.804026	2.631876e-49	-8.615850e-47
Msa0009180	Msa0429200	0.806502	7.972610e-50	-8.615850e-47
Msa0014570	Msa0429200	0.809291	2.035168e-50	-8.615850e-47
Msa0017390	Msa0429200	0.827628	1.408371e-54	-8.615850e-47
Msa0021210	Msa0429200	0.804619	1.980162e-49	-8.615850e-47
Msa0028340	Msa0429200	0.802139	6.463417e-49	-8.615850e-47
Msa0031180	Msa0429200	0.822304	2.544103e-53	-8.615850e-47
Msa0035120	Msa0429200	0.804773	1.838960e-49	-8.615850e-47
Msa0036140	Msa0429200	0.800963	1.126215e-48	-8.615850e-47
Msa0037120	Msa0429200	0.830633	2.630762e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429200	MtrunA17_Chr3g0133061	96.061	1117	42	2	1	1116	1	1116	0.0	2040
Msa0429200	MtrunA17_Chr5g0427301	53.656	1176	357	26	1	1116	1	1048	0.0	1059
Msa0429200	MtrunA17_Chr5g0412381	52.731	531	212	7	495	1003	341	854	1.18e-173	535
Msa0429200	MtrunA17_Chr5g0412381	37.107	159	62	5	19	142	2	157	1.32e-17	88.6
Msa0429200	MtrunA17_Chr2g0313171	44.685	461	225	7	560	993	440	897	2.49e-126	410
Msa0429200	MtrunA17_Chr1g0150541	44.158	505	257	6	539	1025	136	633	7.57e-124	400
Msa0429200	MtrunA17_Chr4g0074041	37.752	347	200	8	585	924	93	430	1.71e-64	235
Msa0429200	MtrunA17_Chr2g0312901	38.608	316	184	7	583	892	21	332	8.32e-63	226
Msa0429200	MtrunA17_Chr6g0458421	35.759	316	191	9	576	888	21	327	2.09e-52	194
Msa0429200	MtrunA17_Chr6g0458431	35.443	316	192	9	576	888	86	392	2.89e-51	192

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429200	AT4G24560.1	44.306	1045	468	32	22	1029	21	988	0.0	660
Msa0429200	AT5G65450.1	63.102	374	127	4	520	892	273	636	1.37e-152	473
Msa0429200	AT5G65450.1	42.500	120	63	3	23	138	3	120	2.26e-22	104
Msa0429200	AT5G65450.2	63.102	374	127	4	520	892	292	655	3.83e-152	473
Msa0429200	AT5G65450.2	41.912	136	69	4	7	138	10	139	3.87e-24	109
Msa0429200	AT1G17110.3	45.642	436	207	5	560	993	414	821	6.87e-124	403
Msa0429200	AT1G17110.3	53.846	52	21	1	67	115	118	169	1.09e-11	69.7
Msa0429200	AT1G17110.1	45.642	436	207	5	560	993	414	821	6.87e-124	403
Msa0429200	AT1G17110.1	53.846	52	21	1	67	115	118	169	1.09e-11	69.7
Msa0429200	AT1G17110.2	45.602	432	205	5	564	993	422	825	4.94e-123	401

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Find 307 sgRNAs with CRISPR-Local

Find 544 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTACCACTGTGTC+AGG	0.493429	3_2:-80436429	Msa0429200:intron
AAAAGCTAGGCACTGAAGTA+CGG	0.579933	3_2:+80437334	None:intergenic
AAAATACCCTATGAAGATAC+CGG	0.556626	3_2:-80438990	Msa0429200:CDS
AAAATCTCCACTATCTCCAA+CGG	0.599351	3_2:-80437081	Msa0429200:CDS
AAACATAATAATTGTACCCA+TGG	0.543455	3_2:-80433437	Msa0429200:three_prime_UTR
AAACATAGGAAGAATGAATA+CGG	0.451334	3_2:-80437943	Msa0429200:CDS
AAAGTTGTTGATCAGTTTAG+AGG	0.311825	3_2:-80437853	Msa0429200:CDS
AAATCCAGAAAATGAGTTAC+TGG	0.365568	3_2:+80438875	None:intergenic
AAATCTCCACTATCTCCAAC+GGG	0.510825	3_2:-80437080	Msa0429200:CDS
AAATGAGCATGACAAATCAG+AGG	0.646786	3_2:-80438790	Msa0429200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATTATTATCGAGGGAA+AGG	+	chr3_2:80433352-80433371	None:intergenic	30.0%
CGGTAAATGTAAATAAAGGA+GGG	+	chr3_2:80433407-80433426	None:intergenic	30.0%
AGATGCCACATAAAATTGAA+AGG	+	chr3_2:80433510-80433529	None:intergenic	30.0%
GTAATAATCCTTTGCTTGAT+TGG	+	chr3_2:80433640-80433659	None:intergenic	30.0%
ACTGCACAAAATCATCATAA+TGG	+	chr3_2:80434158-80434177	None:intergenic	30.0%
AAGATGTTTATGATTAGGAG+AGG	-	chr3_2:80434232-80434251	Msa0429200:intron	30.0%
AGATGTTTATGATTAGGAGA+GGG	-	chr3_2:80434233-80434252	Msa0429200:intron	30.0%
CATTCAACATAGTCTGTAAA+AGG	+	chr3_2:80434312-80434331	None:intergenic	30.0%
TTACAAGTGATATTGGAAAG+AGG	-	chr3_2:80434554-80434573	Msa0429200:intron	30.0%
TACAAGTGATATTGGAAAGA+GGG	-	chr3_2:80434555-80434574	Msa0429200:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	80433313	80440339	80433313	ID=Msa0429200;Name=Msa0429200
chr3_2	mRNA	80433313	80440339	80433313	ID=Msa0429200-mRNA-1;Parent=Msa0429200;Name=Msa0429200-mRNA-1;_AED=0.07;_eAED=0.07;_QI=464\|1\|1\|1\|1\|1\|11\|200\|1116
chr3_2	exon	80433313	80434200	80433313	ID=Msa0429200-mRNA-1:exon:22051;Parent=Msa0429200-mRNA-1
chr3_2	exon	80434493	80434554	80434493	ID=Msa0429200-mRNA-1:exon:22050;Parent=Msa0429200-mRNA-1
chr3_2	exon	80434834	80435046	80434834	ID=Msa0429200-mRNA-1:exon:22049;Parent=Msa0429200-mRNA-1
chr3_2	exon	80435146	80435230	80435146	ID=Msa0429200-mRNA-1:exon:22048;Parent=Msa0429200-mRNA-1
chr3_2	exon	80436430	80436587	80436430	ID=Msa0429200-mRNA-1:exon:22047;Parent=Msa0429200-mRNA-1
chr3_2	exon	80436791	80436911	80436791	ID=Msa0429200-mRNA-1:exon:22046;Parent=Msa0429200-mRNA-1
chr3_2	exon	80437005	80437167	80437005	ID=Msa0429200-mRNA-1:exon:22045;Parent=Msa0429200-mRNA-1
chr3_2	exon	80437285	80437370	80437285	ID=Msa0429200-mRNA-1:exon:22044;Parent=Msa0429200-mRNA-1
chr3_2	exon	80437624	80437712	80437624	ID=Msa0429200-mRNA-1:exon:22043;Parent=Msa0429200-mRNA-1
chr3_2	exon	80437786	80439184	80437786	ID=Msa0429200-mRNA-1:exon:22042;Parent=Msa0429200-mRNA-1
chr3_2	exon	80439589	80440339	80439589	ID=Msa0429200-mRNA-1:exon:22041;Parent=Msa0429200-mRNA-1
chr3_2	five_prime_UTR	80439876	80440339	80439876	ID=Msa0429200-mRNA-1:five_prime_utr;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80439589	80439875	80439589	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80437786	80439184	80437786	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80437624	80437712	80437624	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80437285	80437370	80437285	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80437005	80437167	80437005	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80436791	80436911	80436791	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80436430	80436587	80436430	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80435146	80435230	80435146	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80434834	80435046	80434834	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80434493	80434554	80434493	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	CDS	80433513	80434200	80433513	ID=Msa0429200-mRNA-1:cds;Parent=Msa0429200-mRNA-1
chr3_2	three_prime_UTR	80433313	80433512	80433313	ID=Msa0429200-mRNA-1:three_prime_utr;Parent=Msa0429200-mRNA-1

Gene Sequence

>Msa0429200

ATGCGTGTCACCGGGGATCTAGGGTTTAGGAGCCTGGTCCTTGTGGTGGTTTGTGTGGTGGTTCCGGTGATCGGATTTGTAATTCGTCGGAAATGGCAGATTGCGGTGGCTAGAAATGAAGAGATCAAGAGGCTTTTGATTTTGGCTGCTGAGGAAACTGCCAGGGTTGAGAGAGAGACGTTGTATTCCTCCGGTGCGGTGGTTTCCGCCATTAACAATTATCAATGTGCTCTCTGCTATTTTCCTGCCACTGCGCGCTGCGCTAAGTGCAAATCTGTTCGATACTGCTCCACTGATTGCCAAACCGTTCATTGGCGTCAAGGTCATAAATTTGATTGTCGTCCTCCAAGCAAAACTCATCGGAGCGATGGGGTTACAAGTGATATTGGAAAGAGGGAATTGGAGCATGATTACTCTGGTAACCATGAGGAGAAATCTGAAAGCAGAGGTGCAGAGTGTAAAATACCCTATGAAGATACCGGCTTTTCTCCTGAGGTTTCATTTGGAAAGGATGATAATATTCATGCTCGGTTCCTTGCAGAGGATAATTTAGCAGATTCTAATTCTGAATTTTCCAGTAACTCATTTTCTGGATTTTCGGCTTCCACAAATTCAGGTGATTCATCTGATGATTCGTCTGTCTGTGAGAGTATCATCTCAAATGAGCATGACAAATCAGAGGGACATGTTTCTGTTGTTCACACCCTTGACCTTACCGATAAAACCACAATTGATAGCAAGGTGGATGCAGCAATGTCTTCTTCACCAAAGTTTGCTAGTTTGCTTGATTCAGTTGATGGTTCTTCTACAGTTCATAAATTAAATCATGTTGCTCCTGGTTCTAGTAATGAAGAGAGGAAGCTTGCATCAAATGGTGCCTTAGGCTCGAGCAAAGGGAAGGGGGCAAAAATTGAGCCTTCTGGATTTTGGGATAAAGCTCTTGATTCGAGAGGGATTAAAGATGACACTTATCCATCCCATTCTGATGAATCAGCTGGTGAAAAGACTGATTCTGGATTGTCATTTCGCTTTCAATTCAGTACCACACCTCCTTTGCATATACAAGACACCGATTCTAAAGAATCTTCGAATTATGATGCTCTTCCAAACCCTGTTGGGAAGAATATGCCACATCCAGGACCAGCATCATCTGAGAATGTAATTCATTCTTCAAAGGCAAGGAACCTCTCATTCATCAACGGCAAAGATGCCAATATTATGAGCAATACTCCCGGTGGTTCTGGATACGATCAATTGGAATCTAAAGACAGGTCTGAGCCGCCTCTATATTCTTTTTCCTCCCAATCCTCTAGTATTGGCAAAGATCCAGGTTCTGCAGATGCTATGAGCATACATAACTTGCAATCATCTAGCTCTGTGGCATCAAATCATGTTGTGGGCAACCATGGCTGCACCTTGAAGTCTACCGATAGTAGATGCCAGACACGCGAGCTTGCTGATTCTAAATTAGCTTCTACAACTGAAGTGATTTCACATCCCGGTACAAAACATAGGAAGAATGAATACGGGACTGTCACTTCTCATGTTGCTAGCTATTCTGGAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTAAAAGTTGTTGATCAGTTTAGAGGATCAAATTTGTCAAAGCAAGTTCCTTCAGCAGCTGGGAGTGACATCGCTGGAAAATACAATGACAAGGGTTTTTTTCCATATGAAACATTTGTCAAGCTGTATAACTCCAACAAGGTGGAGTTGCGCCCATTCGGTCTTATAAATATTGGAAACAGTTGTTATGCTAATGCCGTACTTCAGTGCCTAGCTTTTACACCACCCTTATCTGCTTATTTGGTTCAAGGACTACACTCTAAATCATGTACAAATAAAACATGGTGTTTCATCTGTGAATTTGAAAGATTGATTTTGAAGTCGAAGGATACAAAATCTCCACTATCTCCAACGGGCATACTTTCTCAACTACAGAGTATTGGGAGTCAGCTTGGAAATGGCAAAGAAGAAGATGCTCACGAATTTCTAAGGCATGCTATTGACACAATGCAATCTGTATGCCTTATGGAAGCTGGGATTAATGCATCAGGTTCATTGGAAGAGGACACTACTTTAATGGGTCAAACATTTGGAGGATACCTTCGATCAAAGATAAAATGCATGAAATGTGGTGGGAAGTCCGAGCGTCAGGAAAGGATGATGGATCTAACTGTTGAGATAGAAGGGGAAATATCAACACTTGCGGAGGCCCTTCGAAGGTTTACAAGCACCGAGACTTTGGATGGAGAAAACAAGTACCACTGTGTCAGATGCAAATCCTATCAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCCAATATTCTTACAGTTGCATTGAAGCGATTTCAGTCTGGAAAATTCGGGAAGCTCAACAAGCCTGTTCAATTTCCAGAAATACTTGACCTGGCTCCTTTCGTGAGTGGGACCAGTGATAAGACACCCATTTACAGATTGTACGGAGTGGTTGTTCATTTGGATGTTATGAATGCTTCTTTTTCGGGTCACTATGTGTGCTACTTGAAGAATATTCAAAATAAATGGTTCAAGGTTGATGACAGTGTGGTAACAGCAGTTGAATTAGAGAGAGTCTTGACAAAAGGAGCATATATGCTTTTTTATGCTAGGTGCTCTCCAAGGGCCCCAAAATTGATTAGAAACAGGTTATTATCCCAAGATTCAAAAAGTAAGGTCAATGGAAAGTCTACAAAAGCAAGATCTACCTCATCAAATTCTGGTGCGGCTGAACCCATCAGTAGTTCAGTATCTCCTGATGACTCACCCACCTTGGAGTCTTTCTATTCAAGGTTTCACCATCTGAAAAAGATTTTAGAGGAAGACTCATCAAGTGATAGTTCATCCCTTTTCAGCAGTAATTCCGATGAAGGTTCTTGCAGTACTGATAGTACCCGTGATTCAACTAGCATGGATGACTTCTCCGATTATATTTTTGGTGATTCAGGGCGCGGATGGAGTAGCACGTGGAGGAATTCTGATTCTGACACGTCTTCCTCCTCATCTCCCTTGAATTGTAGACAGTCGCCCCTATCTGATATGGACAAATATGATTCAGTTTCTCCAGAGGCAACTAATTTTCGAATTCCCACCGGTTCAAGTGTGAAGACAGATAGGGATGATGTTATTTCCCATCTGCATTCTGACACAATTTTACAGCATAGAAAGTTGGATAGTAGTAGCATTAGCAGCAATAGTAGTAGTAAGGACGCTGACTCATTTCTGAAACTAGGATCTAACCATTCAAATGATAAGAACTCTGTTGTATCGTGTAGAAAATCAAGGAAAAGAACGGAATGA

Protein sequence

>Msa0429200

MRVTGDLGFRSLVLVVVCVVVPVIGFVIRRKWQIAVARNEEIKRLLILAAEETARVERETLYSSGAVVSAINNYQCALCYFPATARCAKCKSVRYCSTDCQTVHWRQGHKFDCRPPSKTHRSDGVTSDIGKRELEHDYSGNHEEKSESRGAECKIPYEDTGFSPEVSFGKDDNIHARFLAEDNLADSNSEFSSNSFSGFSASTNSGDSSDDSSVCESIISNEHDKSEGHVSVVHTLDLTDKTTIDSKVDAAMSSSPKFASLLDSVDGSSTVHKLNHVAPGSSNEERKLASNGALGSSKGKGAKIEPSGFWDKALDSRGIKDDTYPSHSDESAGEKTDSGLSFRFQFSTTPPLHIQDTDSKESSNYDALPNPVGKNMPHPGPASSENVIHSSKARNLSFINGKDANIMSNTPGGSGYDQLESKDRSEPPLYSFSSQSSSIGKDPGSADAMSIHNLQSSSSVASNHVVGNHGCTLKSTDSRCQTRELADSKLASTTEVISHPGTKHRKNEYGTVTSHVASYSGNSKSGLKTSVLKVVDQFRGSNLSKQVPSAAGSDIAGKYNDKGFFPYETFVKLYNSNKVELRPFGLINIGNSCYANAVLQCLAFTPPLSAYLVQGLHSKSCTNKTWCFICEFERLILKSKDTKSPLSPTGILSQLQSIGSQLGNGKEEDAHEFLRHAIDTMQSVCLMEAGINASGSLEEDTTLMGQTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGEISTLAEALRRFTSTETLDGENKYHCVRCKSYQKAKKKLTVSEAPNILTVALKRFQSGKFGKLNKPVQFPEILDLAPFVSGTSDKTPIYRLYGVVVHLDVMNASFSGHYVCYLKNIQNKWFKVDDSVVTAVELERVLTKGAYMLFYARCSPRAPKLIRNRLLSQDSKSKVNGKSTKARSTSSNSGAAEPISSSVSPDDSPTLESFYSRFHHLKKILEEDSSSDSSSLFSSNSDEGSCSTDSTRDSTSMDDFSDYIFGDSGRGWSSTWRNSDSDTSSSSSPLNCRQSPLSDMDKYDSVSPEATNFRIPTGSSVKTDRDDVISHLHSDTILQHRKLDSSSISSNSSSKDADSFLKLGSNHSNDKNSVVSCRKSRKRTE*