Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152400 | XP_013449157.1 | 97.279 | 294 | 6 | 2 | 1 | 293 | 1 | 293 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152400 | sp|Q9SDW0|TGT3A_ARATH | 55.056 | 267 | 96 | 3 | 49 | 291 | 47 | 313 | 1.16e-73 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152400 | A0A072U082 | 97.279 | 294 | 6 | 2 | 1 | 293 | 1 | 293 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1152400 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012710 | Msa1152400 | 0.800713 | 1.266507e-48 | -8.615850e-47 |
| Msa0090510 | Msa1152400 | 0.804000 | 2.664564e-49 | -8.615850e-47 |
| Msa0823540 | Msa1152400 | 0.810902 | 9.151440e-51 | -8.615850e-47 |
| Msa0152560 | Msa1152400 | 0.800775 | 1.230416e-48 | -8.615850e-47 |
| Msa0403490 | Msa1152400 | 0.823943 | 1.055180e-53 | -8.615850e-47 |
| Msa1024680 | Msa1152400 | 0.865831 | 4.440204e-65 | -8.615850e-47 |
| Msa1063360 | Msa1152400 | 0.894703 | 1.921215e-75 | -8.615850e-47 |
| Msa1063420 | Msa1152400 | 0.829375 | 5.331307e-55 | -8.615850e-47 |
| Msa0240270 | Msa1152400 | 0.802108 | 6.560574e-49 | -8.615850e-47 |
| Msa1108710 | Msa1152400 | 0.854095 | 1.546713e-61 | -8.615850e-47 |
| Msa1152400 | Msa1209190 | 0.808307 | 3.302198e-50 | -8.615850e-47 |
| Msa0569780 | Msa1152400 | 0.804809 | 1.807410e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152400 | MtrunA17_Chr7g0242591 | 97.279 | 294 | 6 | 2 | 1 | 293 | 1 | 293 | 0.0 | 575 |
| Msa1152400 | MtrunA17_Chr4g0006261 | 76.984 | 252 | 57 | 1 | 41 | 291 | 28 | 279 | 4.90e-119 | 342 |
| Msa1152400 | MtrunA17_Chr5g0409071 | 46.619 | 281 | 123 | 8 | 37 | 292 | 23 | 301 | 1.48e-56 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152400 | AT5G01380.1 | 55.056 | 267 | 96 | 3 | 49 | 291 | 47 | 313 | 1.18e-74 | 231 |
| Msa1152400 | AT2G38250.1 | 57.299 | 274 | 96 | 4 | 33 | 291 | 19 | 286 | 3.28e-74 | 229 |
| Msa1152400 | AT3G25990.1 | 31.858 | 113 | 74 | 1 | 54 | 163 | 55 | 167 | 6.11e-14 | 71.6 |
| Msa1152400 | AT1G13450.3 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 1.11e-11 | 64.3 |
| Msa1152400 | AT1G13450.2 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 1.11e-11 | 64.3 |
| Msa1152400 | AT1G13450.1 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 1.92e-11 | 64.3 |
| Msa1152400 | AT1G13450.4 | 33.696 | 92 | 61 | 0 | 54 | 145 | 87 | 178 | 3.01e-11 | 62.4 |
Find 68 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGAAACTCCTTTGTTTCT+TGG | 0.162176 | 7_4:-38008373 | None:intergenic |
| AGAACTAGATCAAACTTTCA+TGG | 0.325286 | 7_4:+38008406 | Msa1152400:CDS |
| GCTTGAAGCTCATTGTAAAA+TGG | 0.335464 | 7_4:-38009084 | None:intergenic |
| AAACCTTGTTACTCGCTATA+AGG | 0.349897 | 7_4:+38008526 | Msa1152400:CDS |
| GTTGATGTTGTTGATGATGT+TGG | 0.399503 | 7_4:-38008223 | None:intergenic |
| TGAGAGGAGATTGAAGGAGA+TGG | 0.403012 | 7_4:+38009395 | Msa1152400:CDS |
| CAAAGAGGAACAAACAGCTT+TGG | 0.409902 | 7_4:+38008432 | Msa1152400:CDS |
| AAAGAGGAACAAACAGCTTT+GGG | 0.427051 | 7_4:+38008433 | Msa1152400:CDS |
| CTCTAACACTATGAAGGAAA+AGG | 0.429380 | 7_4:+38008463 | Msa1152400:CDS |
| CAACATGCTCATAACATCAT+AGG | 0.432593 | 7_4:+38008299 | Msa1152400:CDS |
| TGGAACAAAGATGGAGAGAA+AGG | 0.438127 | 7_4:+38009463 | Msa1152400:CDS |
| GGAGATTGAAGGAGATGGAA+TGG | 0.449920 | 7_4:+38009400 | Msa1152400:CDS |
| TCTAACACTATGAAGGAAAA+GGG | 0.470472 | 7_4:+38008464 | Msa1152400:CDS |
| ATATATGTAGGTGGAGGGTA+TGG | 0.470701 | 7_4:-38007985 | None:intergenic |
| AGATTCTTGAGGAGTTTATG+AGG | 0.475642 | 7_4:+38009319 | Msa1152400:CDS |
| GAAGGATTAGAGAAGAAGCT+AGG | 0.478364 | 7_4:+38009496 | Msa1152400:CDS |
| TCAATGGATGGAAGCATTTG+AGG | 0.478413 | 7_4:+38009362 | Msa1152400:CDS |
| TCTGAGGATGAAGAAGAGTT+AGG | 0.481694 | 7_4:+38009186 | Msa1152400:CDS |
| GAGAATATATATGTAGGTGG+AGG | 0.485303 | 7_4:-38007991 | None:intergenic |
| AAGGAGGGTCAAAGAAGAAA+GGG | 0.488338 | 7_4:+38009151 | Msa1152400:CDS |
| GGAGAATGAGAGGAGATTGA+AGG | 0.494385 | 7_4:+38009389 | Msa1152400:CDS |
| AAATGCAAATGGAAGCTCAA+TGG | 0.497271 | 7_4:+38009346 | Msa1152400:CDS |
| GATGGAATGGAGACAAAGAA+TGG | 0.497428 | 7_4:+38009413 | Msa1152400:CDS |
| TATGAGGCAACAAATGCAAA+TGG | 0.498234 | 7_4:+38009335 | Msa1152400:CDS |
| GGTTAATGATGGAACAAAGA+TGG | 0.500019 | 7_4:+38009454 | Msa1152400:CDS |
| GTTAGGCAATGAAGAAAGTG+AGG | 0.500463 | 7_4:+38009203 | Msa1152400:CDS |
| GAGACAAAGAATGGAAGCAT+TGG | 0.501965 | 7_4:+38009422 | Msa1152400:CDS |
| GAAGGAGGGTCAAAGAAGAA+AGG | 0.513151 | 7_4:+38009150 | Msa1152400:CDS |
| GAGGGTATGGTGTGAACAGA+AGG | 0.514895 | 7_4:-38007972 | None:intergenic |
| AAAGGTAAAATGATAATTGG+TGG | 0.519046 | 7_4:+38009261 | Msa1152400:CDS |
| CAAGGATGCAAAGAATGCTA+TGG | 0.520600 | 7_4:+38009118 | Msa1152400:CDS |
| GAGAAAGGGAAGAACAAAGA+AGG | 0.520747 | 7_4:+38009478 | Msa1152400:CDS |
| GGAACAAAGATGGAGAGAAA+GGG | 0.522554 | 7_4:+38009464 | Msa1152400:CDS |
| TAGTGGTAGCAACAATTTGA+AGG | 0.523300 | 7_4:+38009296 | Msa1152400:CDS |
| AGTTATCTCTAACACTATGA+AGG | 0.525230 | 7_4:+38008457 | Msa1152400:CDS |
| TCACGGATAGATTTCCTCAA+TGG | 0.529342 | 7_4:+38008345 | Msa1152400:CDS |
| GGTGGAGGAAATGATAATAG+TGG | 0.531218 | 7_4:+38009279 | Msa1152400:CDS |
| TGGAAGCATTGGAGAATGAG+AGG | 0.532379 | 7_4:+38009433 | Msa1152400:CDS |
| GGAGAATGAGAGGTTAATGA+TGG | 0.535043 | 7_4:+38009443 | Msa1152400:CDS |
| TCGTGTAAGAAGAGAAGAAG+AGG | 0.537803 | 7_4:-38008102 | None:intergenic |
| GATAGGGAGAATATATATGT+AGG | 0.544448 | 7_4:-38007997 | None:intergenic |
| CAGAACAGTGCAAGTGCAAG+TGG | 0.545159 | 7_4:+38008501 | Msa1152400:CDS |
| CAATTTGAAGGAGATTCTTG+AGG | 0.551112 | 7_4:+38009308 | Msa1152400:CDS |
| GGTAAAATGATAATTGGTGG+AGG | 0.559022 | 7_4:+38009264 | Msa1152400:CDS |
| AAATGGAAATTGTTGTCTCA+TGG | 0.560448 | 7_4:-38009067 | None:intergenic |
| TAGTGTTAACGTTGATGTCA+CGG | 0.564347 | 7_4:+38008328 | Msa1152400:CDS |
| AAGGATTAGAGAAGAAGCTA+GGG | 0.564945 | 7_4:+38009497 | Msa1152400:CDS |
| AGGGAGAATATATATGTAGG+TGG | 0.567126 | 7_4:-38007994 | None:intergenic |
| GTTTCTTGGATACTCCATTG+AGG | 0.570470 | 7_4:-38008359 | None:intergenic |
| ATGCTATGGGCTGAAGCAGA+AGG | 0.573045 | 7_4:+38009132 | Msa1152400:CDS |
| GGATGGAAGCATTTGAGGCA+AGG | 0.573712 | 7_4:+38009367 | Msa1152400:CDS |
| AGAATATATATGTAGGTGGA+GGG | 0.578546 | 7_4:-38007990 | None:intergenic |
| TTGAGGCAAGGGAGAATGAG+AGG | 0.584023 | 7_4:+38009379 | Msa1152400:CDS |
| GCAAATGGAAGCTCAATGGA+TGG | 0.584747 | 7_4:+38009350 | Msa1152400:CDS |
| GATGGAAGCATTTGAGGCAA+GGG | 0.587229 | 7_4:+38009368 | Msa1152400:CDS |
| AGAAAGTGAGGGAGATCACA+AGG | 0.594638 | 7_4:+38009215 | Msa1152400:CDS |
| TTAGGCAATGAAGAAAGTGA+GGG | 0.597635 | 7_4:+38009204 | Msa1152400:CDS |
| CTATGGGCTGAAGCAGAAGG+AGG | 0.599474 | 7_4:+38009135 | Msa1152400:CDS |
| AAACTTTCATGGAGACAAAG+AGG | 0.604350 | 7_4:+38008417 | Msa1152400:CDS |
| TATAAAGGGATGTGAAACAA+TGG | 0.607384 | 7_4:+38009035 | Msa1152400:intron |
| ATGGAGTATCCAAGAAACAA+AGG | 0.617542 | 7_4:+38008364 | Msa1152400:CDS |
| AGGGGTGCATGTATCTTCTG+AGG | 0.631436 | 7_4:+38009170 | Msa1152400:CDS |
| AAGTTTGATCTAGTTCTGAA+CGG | 0.639250 | 7_4:-38008400 | None:intergenic |
| AAGGATGCAAAGAATGCTAT+GGG | 0.642173 | 7_4:+38009119 | Msa1152400:CDS |
| GTACCTTATAGCGAGTAACA+AGG | 0.656453 | 7_4:-38008529 | None:intergenic |
| AGGAGGGTCAAAGAAGAAAG+GGG | 0.670389 | 7_4:+38009152 | Msa1152400:CDS |
| TATGGGCTGAAGCAGAAGGA+GGG | 0.673793 | 7_4:+38009136 | Msa1152400:CDS |
| GAAAGTGAGGGAGATCACAA+GGG | 0.730407 | 7_4:+38009216 | Msa1152400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTAAACTTTTTTTT+TGG | + | chr7_4:38008739-38008758 | Msa1152400:intron | 10.0% |
| !!! | ATTTTGTTAAACTTTTTTTT+TGG | + | chr7_4:38008739-38008758 | Msa1152400:intron | 10.0% |
| !! | TAAAAAAAAACAAAAGCAAA+AGG | - | chr7_4:38008176-38008195 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATTCAACTTCAA+TGG | + | chr7_4:38008187-38008206 | Msa1152400:exon | 15.0% |
| !!! | TATTGTTTTGTTTATGTTTT+TGG | + | chr7_4:38009010-38009029 | Msa1152400:intron | 15.0% |
| !!! | ATTGTTTTGTTTATGTTTTT+GGG | + | chr7_4:38009011-38009030 | Msa1152400:intron | 15.0% |
| !! | ATTAAAAAGAAGAAGAAAAA+AGG | + | chr7_4:38009243-38009262 | Msa1152400:CDS | 15.0% |
| !! | AAAAAAGGTAAAATGATAAT+TGG | + | chr7_4:38009258-38009277 | Msa1152400:CDS | 15.0% |
| !! | TAAAAAAAAACAAAAGCAAA+AGG | - | chr7_4:38008176-38008195 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATTCAACTTCAA+TGG | + | chr7_4:38008187-38008206 | Msa1152400:exon | 15.0% |
| !!! | TATTGTTTTGTTTATGTTTT+TGG | + | chr7_4:38009010-38009029 | Msa1152400:intron | 15.0% |
| !!! | ATTGTTTTGTTTATGTTTTT+GGG | + | chr7_4:38009011-38009030 | Msa1152400:intron | 15.0% |
| !! | ATTAAAAAGAAGAAGAAAAA+AGG | + | chr7_4:38009243-38009262 | Msa1152400:CDS | 15.0% |
| !! | AAAAAAGGTAAAATGATAAT+TGG | + | chr7_4:38009258-38009277 | Msa1152400:CDS | 15.0% |
| !! | CACATAGAATTATTAATGAT+TGG | - | chr7_4:38008602-38008621 | None:intergenic | 20.0% |
| !! | AAACTAGAATGATTTATGAT+TGG | - | chr7_4:38008661-38008680 | None:intergenic | 20.0% |
| !! | AAAAGGCAATAAATAAAAAG+TGG | - | chr7_4:38008817-38008836 | None:intergenic | 20.0% |
| !!! | TTTATGTTTTTGGGATATAA+AGG | + | chr7_4:38009020-38009039 | Msa1152400:intron | 20.0% |
| !!! | TTATGTTTTTGGGATATAAA+GGG | + | chr7_4:38009021-38009040 | Msa1152400:intron | 20.0% |
| !! | CACATAGAATTATTAATGAT+TGG | - | chr7_4:38008602-38008621 | None:intergenic | 20.0% |
| !! | AAACTAGAATGATTTATGAT+TGG | - | chr7_4:38008661-38008680 | None:intergenic | 20.0% |
| !! | AAAAGGCAATAAATAAAAAG+TGG | - | chr7_4:38008817-38008836 | None:intergenic | 20.0% |
| !!! | TTTATGTTTTTGGGATATAA+AGG | + | chr7_4:38009020-38009039 | Msa1152400:intron | 20.0% |
| !!! | TTATGTTTTTGGGATATAAA+GGG | + | chr7_4:38009021-38009040 | Msa1152400:intron | 20.0% |
| !!! | AGAAAAAGTTTTGGTGATTT+TGG | - | chr7_4:38008077-38008096 | None:intergenic | 25.0% |
| !! | TTTTTATTCAACTTCAATGG+AGG | + | chr7_4:38008190-38008209 | Msa1152400:exon | 25.0% |
| !! | TTTTATTCAACTTCAATGGA+GGG | + | chr7_4:38008191-38008210 | Msa1152400:exon | 25.0% |
| !!! | GTTAAACTTTTTTTTTGGAC+AGG | + | chr7_4:38008744-38008763 | Msa1152400:intron | 25.0% |
| !!! | TATTGCCTTTTCAATTTGTT+AGG | + | chr7_4:38008826-38008845 | Msa1152400:intron | 25.0% |
| !!! | ATTGCCTTTTCAATTTGTTA+GGG | + | chr7_4:38008827-38008846 | Msa1152400:intron | 25.0% |
| !! | TTTATATTGTGAGCTTTTCA+TGG | + | chr7_4:38008956-38008975 | Msa1152400:intron | 25.0% |
| ! | AAAGGTAAAATGATAATTGG+TGG | + | chr7_4:38009261-38009280 | Msa1152400:CDS | 25.0% |
| !!! | AGAAAAAGTTTTGGTGATTT+TGG | - | chr7_4:38008077-38008096 | None:intergenic | 25.0% |
| !! | TTTTTATTCAACTTCAATGG+AGG | + | chr7_4:38008190-38008209 | Msa1152400:exon | 25.0% |
| !! | TTTTATTCAACTTCAATGGA+GGG | + | chr7_4:38008191-38008210 | Msa1152400:exon | 25.0% |
| !!! | GTTAAACTTTTTTTTTGGAC+AGG | + | chr7_4:38008744-38008763 | Msa1152400:intron | 25.0% |
| !!! | TATTGCCTTTTCAATTTGTT+AGG | + | chr7_4:38008826-38008845 | Msa1152400:intron | 25.0% |
| !!! | ATTGCCTTTTCAATTTGTTA+GGG | + | chr7_4:38008827-38008846 | Msa1152400:intron | 25.0% |
| !! | TTTATATTGTGAGCTTTTCA+TGG | + | chr7_4:38008956-38008975 | Msa1152400:intron | 25.0% |
| ! | AAAGGTAAAATGATAATTGG+TGG | + | chr7_4:38009261-38009280 | Msa1152400:CDS | 25.0% |
| AGAATATATATGTAGGTGGA+GGG | - | chr7_4:38007993-38008012 | None:intergenic | 30.0% | |
| GATAGGGAGAATATATATGT+AGG | - | chr7_4:38008000-38008019 | None:intergenic | 30.0% | |
| AGATGAGAGAGAAAAAGATA+GGG | - | chr7_4:38008016-38008035 | None:intergenic | 30.0% | |
| AAGATGAGAGAGAAAAAGAT+AGG | - | chr7_4:38008017-38008036 | None:intergenic | 30.0% | |
| !!! | AGTTTTGGTGATTTTGGTTA+TGG | - | chr7_4:38008071-38008090 | None:intergenic | 30.0% |
| ! | GAGGCTTATAGAAAAAGTTT+TGG | - | chr7_4:38008086-38008105 | None:intergenic | 30.0% |
| ! | TAAGAAACTCCTTTGTTTCT+TGG | - | chr7_4:38008376-38008395 | None:intergenic | 30.0% |
| !! | AAGTTTGATCTAGTTCTGAA+CGG | - | chr7_4:38008403-38008422 | None:intergenic | 30.0% |
| AGAACTAGATCAAACTTTCA+TGG | + | chr7_4:38008406-38008425 | Msa1152400:CDS | 30.0% | |
| AGTTATCTCTAACACTATGA+AGG | + | chr7_4:38008457-38008476 | Msa1152400:CDS | 30.0% | |
| TCTAACACTATGAAGGAAAA+GGG | + | chr7_4:38008464-38008483 | Msa1152400:CDS | 30.0% | |
| !!! | TTGCCTTTTCAATTTGTTAG+GGG | + | chr7_4:38008828-38008847 | Msa1152400:intron | 30.0% |
| TATAAAGGGATGTGAAACAA+TGG | + | chr7_4:38009035-38009054 | Msa1152400:intron | 30.0% | |
| AAATGGAAATTGTTGTCTCA+TGG | - | chr7_4:38009070-38009089 | None:intergenic | 30.0% | |
| !!! | TTCAAGCTATTTTTAGTGCA+AGG | + | chr7_4:38009100-38009119 | Msa1152400:CDS | 30.0% |
| AGAATATATATGTAGGTGGA+GGG | - | chr7_4:38007993-38008012 | None:intergenic | 30.0% | |
| GATAGGGAGAATATATATGT+AGG | - | chr7_4:38008000-38008019 | None:intergenic | 30.0% | |
| AGATGAGAGAGAAAAAGATA+GGG | - | chr7_4:38008016-38008035 | None:intergenic | 30.0% | |
| AAGATGAGAGAGAAAAAGAT+AGG | - | chr7_4:38008017-38008036 | None:intergenic | 30.0% | |
| !!! | AGTTTTGGTGATTTTGGTTA+TGG | - | chr7_4:38008071-38008090 | None:intergenic | 30.0% |
| ! | GAGGCTTATAGAAAAAGTTT+TGG | - | chr7_4:38008086-38008105 | None:intergenic | 30.0% |
| ! | TAAGAAACTCCTTTGTTTCT+TGG | - | chr7_4:38008376-38008395 | None:intergenic | 30.0% |
| !! | AAGTTTGATCTAGTTCTGAA+CGG | - | chr7_4:38008403-38008422 | None:intergenic | 30.0% |
| AGAACTAGATCAAACTTTCA+TGG | + | chr7_4:38008406-38008425 | Msa1152400:CDS | 30.0% | |
| AGTTATCTCTAACACTATGA+AGG | + | chr7_4:38008457-38008476 | Msa1152400:CDS | 30.0% | |
| TCTAACACTATGAAGGAAAA+GGG | + | chr7_4:38008464-38008483 | Msa1152400:CDS | 30.0% | |
| !!! | TTGCCTTTTCAATTTGTTAG+GGG | + | chr7_4:38008828-38008847 | Msa1152400:intron | 30.0% |
| TATAAAGGGATGTGAAACAA+TGG | + | chr7_4:38009035-38009054 | Msa1152400:intron | 30.0% | |
| AAATGGAAATTGTTGTCTCA+TGG | - | chr7_4:38009070-38009089 | None:intergenic | 30.0% | |
| !!! | TTCAAGCTATTTTTAGTGCA+AGG | + | chr7_4:38009100-38009119 | Msa1152400:CDS | 30.0% |
| GAGAATATATATGTAGGTGG+AGG | - | chr7_4:38007994-38008013 | None:intergenic | 35.0% | |
| AGGGAGAATATATATGTAGG+TGG | - | chr7_4:38007997-38008016 | None:intergenic | 35.0% | |
| !!! | TTTGGTGATTTTGGTTATGG+AGG | - | chr7_4:38008068-38008087 | None:intergenic | 35.0% |
| !! | GTTGATGTTGTTGATGATGT+TGG | - | chr7_4:38008226-38008245 | None:intergenic | 35.0% |
| CAACATGCTCATAACATCAT+AGG | + | chr7_4:38008299-38008318 | Msa1152400:CDS | 35.0% | |
| TAGTGTTAACGTTGATGTCA+CGG | + | chr7_4:38008328-38008347 | Msa1152400:CDS | 35.0% | |
| ! | ATGGAGTATCCAAGAAACAA+AGG | + | chr7_4:38008364-38008383 | Msa1152400:CDS | 35.0% |
| AAACTTTCATGGAGACAAAG+AGG | + | chr7_4:38008417-38008436 | Msa1152400:CDS | 35.0% | |
| AAAGAGGAACAAACAGCTTT+GGG | + | chr7_4:38008433-38008452 | Msa1152400:CDS | 35.0% | |
| CTCTAACACTATGAAGGAAA+AGG | + | chr7_4:38008463-38008482 | Msa1152400:CDS | 35.0% | |
| AAACCTTGTTACTCGCTATA+AGG | + | chr7_4:38008526-38008545 | Msa1152400:CDS | 35.0% | |
| !!! | TGCCTTTTCAATTTGTTAGG+GGG | + | chr7_4:38008829-38008848 | Msa1152400:intron | 35.0% |
| TACCCCCTAACAAATTGAAA+AGG | - | chr7_4:38008834-38008853 | None:intergenic | 35.0% | |
| TTCTCTCTCATGATTCAAAG+AGG | + | chr7_4:38008859-38008878 | Msa1152400:intron | 35.0% | |
| GCTTGAAGCTCATTGTAAAA+TGG | - | chr7_4:38009087-38009106 | None:intergenic | 35.0% | |
| AAGGATGCAAAGAATGCTAT+GGG | + | chr7_4:38009119-38009138 | Msa1152400:CDS | 35.0% | |
| TTAGGCAATGAAGAAAGTGA+GGG | + | chr7_4:38009204-38009223 | Msa1152400:CDS | 35.0% | |
| GGTAAAATGATAATTGGTGG+AGG | + | chr7_4:38009264-38009283 | Msa1152400:CDS | 35.0% | |
| TAGTGGTAGCAACAATTTGA+AGG | + | chr7_4:38009296-38009315 | Msa1152400:CDS | 35.0% | |
| CAATTTGAAGGAGATTCTTG+AGG | + | chr7_4:38009308-38009327 | Msa1152400:CDS | 35.0% | |
| AGATTCTTGAGGAGTTTATG+AGG | + | chr7_4:38009319-38009338 | Msa1152400:CDS | 35.0% | |
| TATGAGGCAACAAATGCAAA+TGG | + | chr7_4:38009335-38009354 | Msa1152400:CDS | 35.0% | |
| AAATGCAAATGGAAGCTCAA+TGG | + | chr7_4:38009346-38009365 | Msa1152400:CDS | 35.0% | |
| ! | GGTTAATGATGGAACAAAGA+TGG | + | chr7_4:38009454-38009473 | Msa1152400:CDS | 35.0% |
| AAGGATTAGAGAAGAAGCTA+GGG | + | chr7_4:38009497-38009516 | Msa1152400:CDS | 35.0% | |
| GAGAATATATATGTAGGTGG+AGG | - | chr7_4:38007994-38008013 | None:intergenic | 35.0% | |
| AGGGAGAATATATATGTAGG+TGG | - | chr7_4:38007997-38008016 | None:intergenic | 35.0% | |
| !!! | TTTGGTGATTTTGGTTATGG+AGG | - | chr7_4:38008068-38008087 | None:intergenic | 35.0% |
| !! | GTTGATGTTGTTGATGATGT+TGG | - | chr7_4:38008226-38008245 | None:intergenic | 35.0% |
| CAACATGCTCATAACATCAT+AGG | + | chr7_4:38008299-38008318 | Msa1152400:CDS | 35.0% | |
| TAGTGTTAACGTTGATGTCA+CGG | + | chr7_4:38008328-38008347 | Msa1152400:CDS | 35.0% | |
| ! | ATGGAGTATCCAAGAAACAA+AGG | + | chr7_4:38008364-38008383 | Msa1152400:CDS | 35.0% |
| AAACTTTCATGGAGACAAAG+AGG | + | chr7_4:38008417-38008436 | Msa1152400:CDS | 35.0% | |
| AAAGAGGAACAAACAGCTTT+GGG | + | chr7_4:38008433-38008452 | Msa1152400:CDS | 35.0% | |
| CTCTAACACTATGAAGGAAA+AGG | + | chr7_4:38008463-38008482 | Msa1152400:CDS | 35.0% | |
| AAACCTTGTTACTCGCTATA+AGG | + | chr7_4:38008526-38008545 | Msa1152400:CDS | 35.0% | |
| !!! | TGCCTTTTCAATTTGTTAGG+GGG | + | chr7_4:38008829-38008848 | Msa1152400:intron | 35.0% |
| TACCCCCTAACAAATTGAAA+AGG | - | chr7_4:38008834-38008853 | None:intergenic | 35.0% | |
| TTCTCTCTCATGATTCAAAG+AGG | + | chr7_4:38008859-38008878 | Msa1152400:intron | 35.0% | |
| GCTTGAAGCTCATTGTAAAA+TGG | - | chr7_4:38009087-38009106 | None:intergenic | 35.0% | |
| AAGGATGCAAAGAATGCTAT+GGG | + | chr7_4:38009119-38009138 | Msa1152400:CDS | 35.0% | |
| TTAGGCAATGAAGAAAGTGA+GGG | + | chr7_4:38009204-38009223 | Msa1152400:CDS | 35.0% | |
| GGTAAAATGATAATTGGTGG+AGG | + | chr7_4:38009264-38009283 | Msa1152400:CDS | 35.0% | |
| TAGTGGTAGCAACAATTTGA+AGG | + | chr7_4:38009296-38009315 | Msa1152400:CDS | 35.0% | |
| CAATTTGAAGGAGATTCTTG+AGG | + | chr7_4:38009308-38009327 | Msa1152400:CDS | 35.0% | |
| AGATTCTTGAGGAGTTTATG+AGG | + | chr7_4:38009319-38009338 | Msa1152400:CDS | 35.0% | |
| TATGAGGCAACAAATGCAAA+TGG | + | chr7_4:38009335-38009354 | Msa1152400:CDS | 35.0% | |
| AAATGCAAATGGAAGCTCAA+TGG | + | chr7_4:38009346-38009365 | Msa1152400:CDS | 35.0% | |
| ! | GGTTAATGATGGAACAAAGA+TGG | + | chr7_4:38009454-38009473 | Msa1152400:CDS | 35.0% |
| AAGGATTAGAGAAGAAGCTA+GGG | + | chr7_4:38009497-38009516 | Msa1152400:CDS | 35.0% | |
| ATATATGTAGGTGGAGGGTA+TGG | - | chr7_4:38007988-38008007 | None:intergenic | 40.0% | |
| TCGTGTAAGAAGAGAAGAAG+AGG | - | chr7_4:38008105-38008124 | None:intergenic | 40.0% | |
| TCACGGATAGATTTCCTCAA+TGG | + | chr7_4:38008345-38008364 | Msa1152400:CDS | 40.0% | |
| GTTTCTTGGATACTCCATTG+AGG | - | chr7_4:38008362-38008381 | None:intergenic | 40.0% | |
| CAAAGAGGAACAAACAGCTT+TGG | + | chr7_4:38008432-38008451 | Msa1152400:CDS | 40.0% | |
| GTACCTTATAGCGAGTAACA+AGG | - | chr7_4:38008532-38008551 | None:intergenic | 40.0% | |
| CAAGGATGCAAAGAATGCTA+TGG | + | chr7_4:38009118-38009137 | Msa1152400:CDS | 40.0% | |
| AAGGAGGGTCAAAGAAGAAA+GGG | + | chr7_4:38009151-38009170 | Msa1152400:CDS | 40.0% | |
| TCTGAGGATGAAGAAGAGTT+AGG | + | chr7_4:38009186-38009205 | Msa1152400:CDS | 40.0% | |
| GTTAGGCAATGAAGAAAGTG+AGG | + | chr7_4:38009203-38009222 | Msa1152400:CDS | 40.0% | |
| GGTGGAGGAAATGATAATAG+TGG | + | chr7_4:38009279-38009298 | Msa1152400:CDS | 40.0% | |
| !! | TCAATGGATGGAAGCATTTG+AGG | + | chr7_4:38009362-38009381 | Msa1152400:CDS | 40.0% |
| GATGGAATGGAGACAAAGAA+TGG | + | chr7_4:38009413-38009432 | Msa1152400:CDS | 40.0% | |
| ! | GAGACAAAGAATGGAAGCAT+TGG | + | chr7_4:38009422-38009441 | Msa1152400:CDS | 40.0% |
| GGAGAATGAGAGGTTAATGA+TGG | + | chr7_4:38009443-38009462 | Msa1152400:CDS | 40.0% | |
| TGGAACAAAGATGGAGAGAA+AGG | + | chr7_4:38009463-38009482 | Msa1152400:CDS | 40.0% | |
| GGAACAAAGATGGAGAGAAA+GGG | + | chr7_4:38009464-38009483 | Msa1152400:CDS | 40.0% | |
| GAGAAAGGGAAGAACAAAGA+AGG | + | chr7_4:38009478-38009497 | Msa1152400:CDS | 40.0% | |
| GAAGGATTAGAGAAGAAGCT+AGG | + | chr7_4:38009496-38009515 | Msa1152400:CDS | 40.0% | |
| ATATATGTAGGTGGAGGGTA+TGG | - | chr7_4:38007988-38008007 | None:intergenic | 40.0% | |
| TCGTGTAAGAAGAGAAGAAG+AGG | - | chr7_4:38008105-38008124 | None:intergenic | 40.0% | |
| TCACGGATAGATTTCCTCAA+TGG | + | chr7_4:38008345-38008364 | Msa1152400:CDS | 40.0% | |
| GTTTCTTGGATACTCCATTG+AGG | - | chr7_4:38008362-38008381 | None:intergenic | 40.0% | |
| CAAAGAGGAACAAACAGCTT+TGG | + | chr7_4:38008432-38008451 | Msa1152400:CDS | 40.0% | |
| GTACCTTATAGCGAGTAACA+AGG | - | chr7_4:38008532-38008551 | None:intergenic | 40.0% | |
| CAAGGATGCAAAGAATGCTA+TGG | + | chr7_4:38009118-38009137 | Msa1152400:CDS | 40.0% | |
| AAGGAGGGTCAAAGAAGAAA+GGG | + | chr7_4:38009151-38009170 | Msa1152400:CDS | 40.0% | |
| TCTGAGGATGAAGAAGAGTT+AGG | + | chr7_4:38009186-38009205 | Msa1152400:CDS | 40.0% | |
| GTTAGGCAATGAAGAAAGTG+AGG | + | chr7_4:38009203-38009222 | Msa1152400:CDS | 40.0% | |
| GGTGGAGGAAATGATAATAG+TGG | + | chr7_4:38009279-38009298 | Msa1152400:CDS | 40.0% | |
| !! | TCAATGGATGGAAGCATTTG+AGG | + | chr7_4:38009362-38009381 | Msa1152400:CDS | 40.0% |
| GATGGAATGGAGACAAAGAA+TGG | + | chr7_4:38009413-38009432 | Msa1152400:CDS | 40.0% | |
| ! | GAGACAAAGAATGGAAGCAT+TGG | + | chr7_4:38009422-38009441 | Msa1152400:CDS | 40.0% |
| GGAGAATGAGAGGTTAATGA+TGG | + | chr7_4:38009443-38009462 | Msa1152400:CDS | 40.0% | |
| TGGAACAAAGATGGAGAGAA+AGG | + | chr7_4:38009463-38009482 | Msa1152400:CDS | 40.0% | |
| GGAACAAAGATGGAGAGAAA+GGG | + | chr7_4:38009464-38009483 | Msa1152400:CDS | 40.0% | |
| GAGAAAGGGAAGAACAAAGA+AGG | + | chr7_4:38009478-38009497 | Msa1152400:CDS | 40.0% | |
| GAAGGATTAGAGAAGAAGCT+AGG | + | chr7_4:38009496-38009515 | Msa1152400:CDS | 40.0% | |
| AAGAGAGAGAGAGAGAGAGA+GGG | - | chr7_4:38008042-38008061 | None:intergenic | 45.0% | |
| !!! | GGTGATTTTGGTTATGGAGG+AGG | - | chr7_4:38008065-38008084 | None:intergenic | 45.0% |
| GAAGGAGGGTCAAAGAAGAA+AGG | + | chr7_4:38009150-38009169 | Msa1152400:CDS | 45.0% | |
| AGGAGGGTCAAAGAAGAAAG+GGG | + | chr7_4:38009152-38009171 | Msa1152400:CDS | 45.0% | |
| AGAAAGTGAGGGAGATCACA+AGG | + | chr7_4:38009215-38009234 | Msa1152400:CDS | 45.0% | |
| GAAAGTGAGGGAGATCACAA+GGG | + | chr7_4:38009216-38009235 | Msa1152400:CDS | 45.0% | |
| GCAAATGGAAGCTCAATGGA+TGG | + | chr7_4:38009350-38009369 | Msa1152400:CDS | 45.0% | |
| !! | GATGGAAGCATTTGAGGCAA+GGG | + | chr7_4:38009368-38009387 | Msa1152400:CDS | 45.0% |
| GGAGAATGAGAGGAGATTGA+AGG | + | chr7_4:38009389-38009408 | Msa1152400:CDS | 45.0% | |
| TGAGAGGAGATTGAAGGAGA+TGG | + | chr7_4:38009395-38009414 | Msa1152400:CDS | 45.0% | |
| GGAGATTGAAGGAGATGGAA+TGG | + | chr7_4:38009400-38009419 | Msa1152400:CDS | 45.0% | |
| !! | TGGAAGCATTGGAGAATGAG+AGG | + | chr7_4:38009433-38009452 | Msa1152400:CDS | 45.0% |
| GCTCACAAGAGAAGACATGT+AGG | + | chr7_4:38009560-38009579 | Msa1152400:CDS | 45.0% | |
| AAGAGAGAGAGAGAGAGAGA+GGG | - | chr7_4:38008042-38008061 | None:intergenic | 45.0% | |
| !!! | GGTGATTTTGGTTATGGAGG+AGG | - | chr7_4:38008065-38008084 | None:intergenic | 45.0% |
| GAAGGAGGGTCAAAGAAGAA+AGG | + | chr7_4:38009150-38009169 | Msa1152400:CDS | 45.0% | |
| AGGAGGGTCAAAGAAGAAAG+GGG | + | chr7_4:38009152-38009171 | Msa1152400:CDS | 45.0% | |
| AGAAAGTGAGGGAGATCACA+AGG | + | chr7_4:38009215-38009234 | Msa1152400:CDS | 45.0% | |
| GAAAGTGAGGGAGATCACAA+GGG | + | chr7_4:38009216-38009235 | Msa1152400:CDS | 45.0% | |
| GCAAATGGAAGCTCAATGGA+TGG | + | chr7_4:38009350-38009369 | Msa1152400:CDS | 45.0% | |
| !! | GATGGAAGCATTTGAGGCAA+GGG | + | chr7_4:38009368-38009387 | Msa1152400:CDS | 45.0% |
| GGAGAATGAGAGGAGATTGA+AGG | + | chr7_4:38009389-38009408 | Msa1152400:CDS | 45.0% | |
| TGAGAGGAGATTGAAGGAGA+TGG | + | chr7_4:38009395-38009414 | Msa1152400:CDS | 45.0% | |
| GGAGATTGAAGGAGATGGAA+TGG | + | chr7_4:38009400-38009419 | Msa1152400:CDS | 45.0% | |
| !! | TGGAAGCATTGGAGAATGAG+AGG | + | chr7_4:38009433-38009452 | Msa1152400:CDS | 45.0% |
| ! | GAGGGTATGGTGTGAACAGA+AGG | - | chr7_4:38007975-38007994 | None:intergenic | 50.0% |
| GAAGAGAGAGAGAGAGAGAG+AGG | - | chr7_4:38008043-38008062 | None:intergenic | 50.0% | |
| CAGAACAGTGCAAGTGCAAG+TGG | + | chr7_4:38008501-38008520 | Msa1152400:CDS | 50.0% | |
| ! | ATGCTATGGGCTGAAGCAGA+AGG | + | chr7_4:38009132-38009151 | Msa1152400:CDS | 50.0% |
| ! | TATGGGCTGAAGCAGAAGGA+GGG | + | chr7_4:38009136-38009155 | Msa1152400:CDS | 50.0% |
| ! | AGGGGTGCATGTATCTTCTG+AGG | + | chr7_4:38009170-38009189 | Msa1152400:CDS | 50.0% |
| !! | GGATGGAAGCATTTGAGGCA+AGG | + | chr7_4:38009367-38009386 | Msa1152400:CDS | 50.0% |
| TTGAGGCAAGGGAGAATGAG+AGG | + | chr7_4:38009379-38009398 | Msa1152400:CDS | 50.0% | |
| ! | GAGGGTATGGTGTGAACAGA+AGG | - | chr7_4:38007975-38007994 | None:intergenic | 50.0% |
| GAAGAGAGAGAGAGAGAGAG+AGG | - | chr7_4:38008043-38008062 | None:intergenic | 50.0% | |
| CAGAACAGTGCAAGTGCAAG+TGG | + | chr7_4:38008501-38008520 | Msa1152400:CDS | 50.0% | |
| ! | ATGCTATGGGCTGAAGCAGA+AGG | + | chr7_4:38009132-38009151 | Msa1152400:CDS | 50.0% |
| ! | TATGGGCTGAAGCAGAAGGA+GGG | + | chr7_4:38009136-38009155 | Msa1152400:CDS | 50.0% |
| ! | AGGGGTGCATGTATCTTCTG+AGG | + | chr7_4:38009170-38009189 | Msa1152400:CDS | 50.0% |
| !! | GGATGGAAGCATTTGAGGCA+AGG | + | chr7_4:38009367-38009386 | Msa1152400:CDS | 50.0% |
| TTGAGGCAAGGGAGAATGAG+AGG | + | chr7_4:38009379-38009398 | Msa1152400:CDS | 50.0% | |
| ! | CTATGGGCTGAAGCAGAAGG+AGG | + | chr7_4:38009135-38009154 | Msa1152400:CDS | 55.0% |
| ! | CTATGGGCTGAAGCAGAAGG+AGG | + | chr7_4:38009135-38009154 | Msa1152400:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 38007962 | 38009581 | 38007962 | ID=Msa1152400;Name=Msa1152400 |
| chr7_4 | mRNA | 38007962 | 38009581 | 38007962 | ID=Msa1152400-mRNA-1;Parent=Msa1152400;Name=Msa1152400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=244|1|0.5|1|1|1|2|0|293 |
| chr7_4 | exon | 38007962 | 38008547 | 38007962 | ID=Msa1152400-mRNA-1:exon:9041;Parent=Msa1152400-mRNA-1 |
| chr7_4 | exon | 38009042 | 38009581 | 38009042 | ID=Msa1152400-mRNA-1:exon:9042;Parent=Msa1152400-mRNA-1 |
| chr7_4 | five_prime_UTR | 38007962 | 38008205 | 38007962 | ID=Msa1152400-mRNA-1:five_prime_utr;Parent=Msa1152400-mRNA-1 |
| chr7_4 | CDS | 38008206 | 38008547 | 38008206 | ID=Msa1152400-mRNA-1:cds;Parent=Msa1152400-mRNA-1 |
| chr7_4 | CDS | 38009042 | 38009581 | 38009042 | ID=Msa1152400-mRNA-1:cds;Parent=Msa1152400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
