AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063420 MtrunA17_Chr7g0242591 82.996 247 20 4 1 241 63 293 8.94e-92 272
Msa1063420 MtrunA17_Chr4g0006261 65.574 244 63 3 1 239 52 279 2.03e-80 242
Msa1063420 MtrunA17_Chr5g0409071 39.544 263 117 9 2 240 57 301 5.00e-30 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063420 AT5G01380.1 45.802 262 107 4 2 239 63 313 1.38e-46 157
Msa1063420 AT2G38250.1 50.199 251 95 4 2 239 53 286 1.66e-44 151

Find 62 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAAACTCCTTTGTTTCT+TGG 0.162176 7_2:+55337799 None:intergenic
AGAACTAGATCAAACTTTCA+TGG 0.325286 7_2:-55337766 Msa1063420:CDS
GCTTGAAGCTCATTGTAAAA+TGG 0.335464 7_2:+55337087 None:intergenic
AAACCTTGTTACTCGCTATA+AGG 0.349897 7_2:-55337647 Msa1063420:intron
CAAAGAGGAACAAACAGCTT+TGG 0.409902 7_2:-55337740 Msa1063420:CDS
TGAGAGGAGATTGAAGGAGA+TGG 0.420471 7_2:-55336776 Msa1063420:CDS
AAAGAGGAACAAACAGCTTT+GGG 0.427051 7_2:-55337739 Msa1063420:CDS
CAACATGCTCATAACATCAT+AGG 0.432593 7_2:-55337873 Msa1063420:five_prime_UTR
TGGAACAAAGATGGAGAGAA+AGG 0.438127 7_2:-55336708 Msa1063420:CDS
TGTTATGAGCATGTTGTTGT+TGG 0.441805 7_2:+55337880 None:intergenic
GAAGGATTAGAGAGGAAGCT+AGG 0.463838 7_2:-55336675 Msa1063420:CDS
GGAGATTGAAGGAGATGGAG+TGG 0.466184 7_2:-55336771 Msa1063420:CDS
AGATTCTTGAGGAGTTTATG+AGG 0.475642 7_2:-55336852 Msa1063420:CDS
TCAATGGATGGAAGCATTTG+AGG 0.478413 7_2:-55336809 Msa1063420:CDS
TCTGAGGATGAAGAAGAGTT+AGG 0.481694 7_2:-55336985 Msa1063420:CDS
AAGGAGGGTCAAAGAAGAAA+GGG 0.488338 7_2:-55337020 Msa1063420:CDS
GATGGAGTGGAGACAAAGAA+TGG 0.488486 7_2:-55336758 Msa1063420:CDS
GGAGAATGAGAGGAGATTGA+AGG 0.494385 7_2:-55336782 Msa1063420:CDS
AAATGCAAATGGAAGCTCAA+TGG 0.497271 7_2:-55336825 Msa1063420:CDS
TATGAGGCAACAAATGCAAA+TGG 0.498234 7_2:-55336836 Msa1063420:CDS
GGTTAATGATGGAACAAAGA+TGG 0.500019 7_2:-55336717 Msa1063420:CDS
GTTAGGCAATGAAGAAAGTG+AGG 0.500463 7_2:-55336968 Msa1063420:CDS
GAAGGAGGGTCAAAGAAGAA+AGG 0.513151 7_2:-55337021 Msa1063420:CDS
CTCTAACACTATGAAGGAAA+GGG 0.517204 7_2:-55337709 Msa1063420:CDS
GAGACAAAGAATGGAAGCAT+TGG 0.518130 7_2:-55336749 Msa1063420:CDS
AAAGGTAAAATGATAATTGG+TGG 0.519046 7_2:-55336910 Msa1063420:CDS
CAAGGATGCAAAGAATGCTA+TGG 0.520600 7_2:-55337053 Msa1063420:CDS
GAGAAAGGGAAGAACAAAGA+AGG 0.520747 7_2:-55336693 Msa1063420:CDS
GGAACAAAGATGGAGAGAAA+GGG 0.522554 7_2:-55336707 Msa1063420:CDS
TAGTGGTAGCAACAATTTGA+AGG 0.523300 7_2:-55336875 Msa1063420:CDS
AGTTATCTCTAACACTATGA+AGG 0.525230 7_2:-55337715 Msa1063420:CDS
TCACGGATAGATTTCCTCAA+TGG 0.529342 7_2:-55337827 Msa1063420:five_prime_UTR
GGTGGAGGAAATGATAATAG+TGG 0.531218 7_2:-55336892 Msa1063420:CDS
TGGAAGCATTGGAGAATGAG+AGG 0.532379 7_2:-55336738 Msa1063420:CDS
GGAGAATGAGAGGTTAATGA+TGG 0.535043 7_2:-55336728 Msa1063420:CDS
TCTCTAACACTATGAAGGAA+AGG 0.540402 7_2:-55337710 Msa1063420:CDS
CAGAACAGTGCAAGTGCAAG+TGG 0.545159 7_2:-55337672 Msa1063420:CDS
CAATTTGAAGGAGATTCTTG+AGG 0.551112 7_2:-55336863 Msa1063420:CDS
GGTAAAATGATAATTGGTGG+AGG 0.559022 7_2:-55336907 Msa1063420:CDS
AAATGGAAATTGTTGTCTCA+TGG 0.560448 7_2:+55337104 None:intergenic
AAGGATTAGAGAGGAAGCTA+GGG 0.562239 7_2:-55336674 Msa1063420:CDS
TAGTGTTAACGTTGATGTCA+CGG 0.564347 7_2:-55337844 Msa1063420:five_prime_UTR
GTTTCTTGGATACTCCATTG+AGG 0.570470 7_2:+55337813 None:intergenic
ATGCTATGGGCTGAAGCAGA+AGG 0.573045 7_2:-55337039 Msa1063420:CDS
GGATGGAAGCATTTGAGGCA+AGG 0.573712 7_2:-55336804 Msa1063420:CDS
TTGAGGCAAGGGAGAATGAG+AGG 0.584023 7_2:-55336792 Msa1063420:CDS
GCAAATGGAAGCTCAATGGA+TGG 0.584747 7_2:-55336821 Msa1063420:CDS
GATGGAAGCATTTGAGGCAA+GGG 0.587229 7_2:-55336803 Msa1063420:CDS
AGAAAGTGAGGGAGATCACA+AGG 0.594638 7_2:-55336956 Msa1063420:CDS
TTAGGCAATGAAGAAAGTGA+GGG 0.597635 7_2:-55336967 Msa1063420:CDS
CTATGGGCTGAAGCAGAAGG+AGG 0.599474 7_2:-55337036 Msa1063420:CDS
AAACTTTCATGGAGACAAAG+AGG 0.604350 7_2:-55337755 Msa1063420:CDS
AGAACAAAGAAGGATTAGAG+AGG 0.604574 7_2:-55336683 Msa1063420:CDS
TATAAAGGGATGTGAAACAA+TGG 0.607384 7_2:-55337136 Msa1063420:CDS
ATGGAGTATCCAAGAAACAA+AGG 0.617542 7_2:-55337808 Msa1063420:five_prime_UTR
AGGGGTGCATGTATCTTCTG+AGG 0.631436 7_2:-55337001 Msa1063420:CDS
AAGTTTGATCTAGTTCTGAA+CGG 0.639250 7_2:+55337772 None:intergenic
AAGGATGCAAAGAATGCTAT+GGG 0.642173 7_2:-55337052 Msa1063420:CDS
GTACCTTATAGCGAGTAACA+AGG 0.656453 7_2:+55337644 None:intergenic
AGGAGGGTCAAAGAAGAAAG+GGG 0.670389 7_2:-55337019 Msa1063420:CDS
TATGGGCTGAAGCAGAAGGA+GGG 0.673793 7_2:-55337035 Msa1063420:CDS
GAAAGTGAGGGAGATCACAA+GGG 0.730407 7_2:-55336955 Msa1063420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTAAACTTTTTTTTT+TGG - chr7_2:55337108-55337127 Msa1063420:CDS 10.0%
!!! TTTTGTTAAACTTTTTTTTT+TGG - chr7_2:55337108-55337127 Msa1063420:CDS 10.0%
!!! TATTGTTTTGTTTATGTTTT+TGG - chr7_2:55337380-55337399 Msa1063420:intron 15.0%
!!! ATTGTTTTGTTTATGTTTTT+GGG - chr7_2:55337381-55337400 Msa1063420:intron 15.0%
!! ATTAAAAAGAAGAAGAAAAA+AGG - chr7_2:55337613-55337632 Msa1063420:intron 15.0%
!! AAAAAAGGTAAAATGATAAT+TGG - chr7_2:55337628-55337647 Msa1063420:intron 15.0%
!!! TATTGTTTTGTTTATGTTTT+TGG - chr7_2:55337380-55337399 Msa1063420:intron 15.0%
!!! ATTGTTTTGTTTATGTTTTT+GGG - chr7_2:55337381-55337400 Msa1063420:intron 15.0%
!! ATTAAAAAGAAGAAGAAAAA+AGG - chr7_2:55337613-55337632 Msa1063420:intron 15.0%
!! AAAAAAGGTAAAATGATAAT+TGG - chr7_2:55337628-55337647 Msa1063420:intron 15.0%
!! CACATAGAATTATTAATGAT+TGG + chr7_2:55336970-55336989 None:intergenic 20.0%
!! AAACTAGAATGATTTATGAT+TGG + chr7_2:55337029-55337048 None:intergenic 20.0%
!!! TTAAACTTTTTTTTTTGGAC+AGG - chr7_2:55337113-55337132 Msa1063420:CDS 20.0%
!! AAAAGGCAATAAATAAAAAG+TGG + chr7_2:55337186-55337205 None:intergenic 20.0%
!!! TTTATGTTTTTGGGATATAA+AGG - chr7_2:55337390-55337409 Msa1063420:intron 20.0%
!!! TTATGTTTTTGGGATATAAA+GGG - chr7_2:55337391-55337410 Msa1063420:intron 20.0%
!! CACATAGAATTATTAATGAT+TGG + chr7_2:55336970-55336989 None:intergenic 20.0%
!! AAACTAGAATGATTTATGAT+TGG + chr7_2:55337029-55337048 None:intergenic 20.0%
!!! TTAAACTTTTTTTTTTGGAC+AGG - chr7_2:55337113-55337132 Msa1063420:CDS 20.0%
!! AAAAGGCAATAAATAAAAAG+TGG + chr7_2:55337186-55337205 None:intergenic 20.0%
!!! TTTATGTTTTTGGGATATAA+AGG - chr7_2:55337390-55337409 Msa1063420:intron 20.0%
!!! TTATGTTTTTGGGATATAAA+GGG - chr7_2:55337391-55337410 Msa1063420:intron 20.0%
!!! TATTGCCTTTTCAATTTGTT+AGG - chr7_2:55337195-55337214 Msa1063420:intron 25.0%
!!! ATTGCCTTTTCAATTTGTTA+GGG - chr7_2:55337196-55337215 Msa1063420:intron 25.0%
!! TTTATATTGTGAGCTTTTCA+TGG - chr7_2:55337326-55337345 Msa1063420:intron 25.0%
! AAAGGTAAAATGATAATTGG+TGG - chr7_2:55337631-55337650 Msa1063420:intron 25.0%
!!! TATTGCCTTTTCAATTTGTT+AGG - chr7_2:55337195-55337214 Msa1063420:intron 25.0%
!!! ATTGCCTTTTCAATTTGTTA+GGG - chr7_2:55337196-55337215 Msa1063420:intron 25.0%
!! TTTATATTGTGAGCTTTTCA+TGG - chr7_2:55337326-55337345 Msa1063420:intron 25.0%
! AAAGGTAAAATGATAATTGG+TGG - chr7_2:55337631-55337650 Msa1063420:intron 25.0%
! TAAGAAACTCCTTTGTTTCT+TGG + chr7_2:55336745-55336764 None:intergenic 30.0%
!! AAGTTTGATCTAGTTCTGAA+CGG + chr7_2:55336772-55336791 None:intergenic 30.0%
AGAACTAGATCAAACTTTCA+TGG - chr7_2:55336775-55336794 Msa1063420:CDS 30.0%
AGTTATCTCTAACACTATGA+AGG - chr7_2:55336826-55336845 Msa1063420:CDS 30.0%
!!! TTGCCTTTTCAATTTGTTAG+GGG - chr7_2:55337197-55337216 Msa1063420:intron 30.0%
TATAAAGGGATGTGAAACAA+TGG - chr7_2:55337405-55337424 Msa1063420:intron 30.0%
AAATGGAAATTGTTGTCTCA+TGG + chr7_2:55337440-55337459 None:intergenic 30.0%
!!! TTCAAGCTATTTTTAGTGCA+AGG - chr7_2:55337470-55337489 Msa1063420:intron 30.0%
! TAAGAAACTCCTTTGTTTCT+TGG + chr7_2:55336745-55336764 None:intergenic 30.0%
!! AAGTTTGATCTAGTTCTGAA+CGG + chr7_2:55336772-55336791 None:intergenic 30.0%
AGAACTAGATCAAACTTTCA+TGG - chr7_2:55336775-55336794 Msa1063420:CDS 30.0%
AGTTATCTCTAACACTATGA+AGG - chr7_2:55336826-55336845 Msa1063420:CDS 30.0%
!!! TTGCCTTTTCAATTTGTTAG+GGG - chr7_2:55337197-55337216 Msa1063420:intron 30.0%
TATAAAGGGATGTGAAACAA+TGG - chr7_2:55337405-55337424 Msa1063420:intron 30.0%
AAATGGAAATTGTTGTCTCA+TGG + chr7_2:55337440-55337459 None:intergenic 30.0%
!!! TTCAAGCTATTTTTAGTGCA+AGG - chr7_2:55337470-55337489 Msa1063420:intron 30.0%
TGTTATGAGCATGTTGTTGT+TGG + chr7_2:55336664-55336683 None:intergenic 35.0%
CAACATGCTCATAACATCAT+AGG - chr7_2:55336668-55336687 Msa1063420:CDS 35.0%
TAGTGTTAACGTTGATGTCA+CGG - chr7_2:55336697-55336716 Msa1063420:CDS 35.0%
! ATGGAGTATCCAAGAAACAA+AGG - chr7_2:55336733-55336752 Msa1063420:CDS 35.0%
AAACTTTCATGGAGACAAAG+AGG - chr7_2:55336786-55336805 Msa1063420:CDS 35.0%
AAAGAGGAACAAACAGCTTT+GGG - chr7_2:55336802-55336821 Msa1063420:CDS 35.0%
TCTCTAACACTATGAAGGAA+AGG - chr7_2:55336831-55336850 Msa1063420:CDS 35.0%
CTCTAACACTATGAAGGAAA+GGG - chr7_2:55336832-55336851 Msa1063420:CDS 35.0%
AAACCTTGTTACTCGCTATA+AGG - chr7_2:55336894-55336913 Msa1063420:CDS 35.0%
!!! TGCCTTTTCAATTTGTTAGG+GGG - chr7_2:55337198-55337217 Msa1063420:intron 35.0%
TACCCCCTAACAAATTGAAA+AGG + chr7_2:55337203-55337222 None:intergenic 35.0%
TTTCTCTCTCTCATGATCAA+AGG - chr7_2:55337227-55337246 Msa1063420:intron 35.0%
TTCTCTCTCTCATGATCAAA+GGG - chr7_2:55337228-55337247 Msa1063420:intron 35.0%
GCTTGAAGCTCATTGTAAAA+TGG + chr7_2:55337457-55337476 None:intergenic 35.0%
AAGGATGCAAAGAATGCTAT+GGG - chr7_2:55337489-55337508 Msa1063420:intron 35.0%
TTAGGCAATGAAGAAAGTGA+GGG - chr7_2:55337574-55337593 Msa1063420:intron 35.0%
GGTAAAATGATAATTGGTGG+AGG - chr7_2:55337634-55337653 Msa1063420:intron 35.0%
TAGTGGTAGCAACAATTTGA+AGG - chr7_2:55337666-55337685 Msa1063420:CDS 35.0%
CAATTTGAAGGAGATTCTTG+AGG - chr7_2:55337678-55337697 Msa1063420:CDS 35.0%
AGATTCTTGAGGAGTTTATG+AGG - chr7_2:55337689-55337708 Msa1063420:CDS 35.0%
TATGAGGCAACAAATGCAAA+TGG - chr7_2:55337705-55337724 Msa1063420:CDS 35.0%
AAATGCAAATGGAAGCTCAA+TGG - chr7_2:55337716-55337735 Msa1063420:CDS 35.0%
! GGTTAATGATGGAACAAAGA+TGG - chr7_2:55337824-55337843 Msa1063420:five_prime_UTR 35.0%
AGAACAAAGAAGGATTAGAG+AGG - chr7_2:55337858-55337877 Msa1063420:five_prime_UTR 35.0%
TGTTATGAGCATGTTGTTGT+TGG + chr7_2:55336664-55336683 None:intergenic 35.0%
CAACATGCTCATAACATCAT+AGG - chr7_2:55336668-55336687 Msa1063420:CDS 35.0%
TAGTGTTAACGTTGATGTCA+CGG - chr7_2:55336697-55336716 Msa1063420:CDS 35.0%
! ATGGAGTATCCAAGAAACAA+AGG - chr7_2:55336733-55336752 Msa1063420:CDS 35.0%
AAACTTTCATGGAGACAAAG+AGG - chr7_2:55336786-55336805 Msa1063420:CDS 35.0%
AAAGAGGAACAAACAGCTTT+GGG - chr7_2:55336802-55336821 Msa1063420:CDS 35.0%
TCTCTAACACTATGAAGGAA+AGG - chr7_2:55336831-55336850 Msa1063420:CDS 35.0%
CTCTAACACTATGAAGGAAA+GGG - chr7_2:55336832-55336851 Msa1063420:CDS 35.0%
AAACCTTGTTACTCGCTATA+AGG - chr7_2:55336894-55336913 Msa1063420:CDS 35.0%
!!! TGCCTTTTCAATTTGTTAGG+GGG - chr7_2:55337198-55337217 Msa1063420:intron 35.0%
TACCCCCTAACAAATTGAAA+AGG + chr7_2:55337203-55337222 None:intergenic 35.0%
TTTCTCTCTCTCATGATCAA+AGG - chr7_2:55337227-55337246 Msa1063420:intron 35.0%
TTCTCTCTCTCATGATCAAA+GGG - chr7_2:55337228-55337247 Msa1063420:intron 35.0%
GCTTGAAGCTCATTGTAAAA+TGG + chr7_2:55337457-55337476 None:intergenic 35.0%
AAGGATGCAAAGAATGCTAT+GGG - chr7_2:55337489-55337508 Msa1063420:intron 35.0%
TTAGGCAATGAAGAAAGTGA+GGG - chr7_2:55337574-55337593 Msa1063420:intron 35.0%
GGTAAAATGATAATTGGTGG+AGG - chr7_2:55337634-55337653 Msa1063420:intron 35.0%
TAGTGGTAGCAACAATTTGA+AGG - chr7_2:55337666-55337685 Msa1063420:CDS 35.0%
CAATTTGAAGGAGATTCTTG+AGG - chr7_2:55337678-55337697 Msa1063420:CDS 35.0%
AGATTCTTGAGGAGTTTATG+AGG - chr7_2:55337689-55337708 Msa1063420:CDS 35.0%
TATGAGGCAACAAATGCAAA+TGG - chr7_2:55337705-55337724 Msa1063420:CDS 35.0%
AAATGCAAATGGAAGCTCAA+TGG - chr7_2:55337716-55337735 Msa1063420:CDS 35.0%
! GGTTAATGATGGAACAAAGA+TGG - chr7_2:55337824-55337843 Msa1063420:five_prime_UTR 35.0%
AGAACAAAGAAGGATTAGAG+AGG - chr7_2:55337858-55337877 Msa1063420:five_prime_UTR 35.0%
TCACGGATAGATTTCCTCAA+TGG - chr7_2:55336714-55336733 Msa1063420:CDS 40.0%
GTTTCTTGGATACTCCATTG+AGG + chr7_2:55336731-55336750 None:intergenic 40.0%
CAAAGAGGAACAAACAGCTT+TGG - chr7_2:55336801-55336820 Msa1063420:CDS 40.0%
GTACCTTATAGCGAGTAACA+AGG + chr7_2:55336900-55336919 None:intergenic 40.0%
CAAGGATGCAAAGAATGCTA+TGG - chr7_2:55337488-55337507 Msa1063420:intron 40.0%
AAGGAGGGTCAAAGAAGAAA+GGG - chr7_2:55337521-55337540 Msa1063420:intron 40.0%
TCTGAGGATGAAGAAGAGTT+AGG - chr7_2:55337556-55337575 Msa1063420:intron 40.0%
GTTAGGCAATGAAGAAAGTG+AGG - chr7_2:55337573-55337592 Msa1063420:intron 40.0%
GGTGGAGGAAATGATAATAG+TGG - chr7_2:55337649-55337668 Msa1063420:CDS 40.0%
!! TCAATGGATGGAAGCATTTG+AGG - chr7_2:55337732-55337751 Msa1063420:CDS 40.0%
! GAGACAAAGAATGGAAGCAT+TGG - chr7_2:55337792-55337811 Msa1063420:exon 40.0%
GGAGAATGAGAGGTTAATGA+TGG - chr7_2:55337813-55337832 Msa1063420:five_prime_UTR 40.0%
TGGAACAAAGATGGAGAGAA+AGG - chr7_2:55337833-55337852 Msa1063420:five_prime_UTR 40.0%
GGAACAAAGATGGAGAGAAA+GGG - chr7_2:55337834-55337853 Msa1063420:five_prime_UTR 40.0%
GAGAAAGGGAAGAACAAAGA+AGG - chr7_2:55337848-55337867 Msa1063420:five_prime_UTR 40.0%
AAGGATTAGAGAGGAAGCTA+GGG - chr7_2:55337867-55337886 Msa1063420:five_prime_UTR 40.0%
TCACGGATAGATTTCCTCAA+TGG - chr7_2:55336714-55336733 Msa1063420:CDS 40.0%
GTTTCTTGGATACTCCATTG+AGG + chr7_2:55336731-55336750 None:intergenic 40.0%
CAAAGAGGAACAAACAGCTT+TGG - chr7_2:55336801-55336820 Msa1063420:CDS 40.0%
GTACCTTATAGCGAGTAACA+AGG + chr7_2:55336900-55336919 None:intergenic 40.0%
CAAGGATGCAAAGAATGCTA+TGG - chr7_2:55337488-55337507 Msa1063420:intron 40.0%
AAGGAGGGTCAAAGAAGAAA+GGG - chr7_2:55337521-55337540 Msa1063420:intron 40.0%
TCTGAGGATGAAGAAGAGTT+AGG - chr7_2:55337556-55337575 Msa1063420:intron 40.0%
GTTAGGCAATGAAGAAAGTG+AGG - chr7_2:55337573-55337592 Msa1063420:intron 40.0%
GGTGGAGGAAATGATAATAG+TGG - chr7_2:55337649-55337668 Msa1063420:CDS 40.0%
!! TCAATGGATGGAAGCATTTG+AGG - chr7_2:55337732-55337751 Msa1063420:CDS 40.0%
! GAGACAAAGAATGGAAGCAT+TGG - chr7_2:55337792-55337811 Msa1063420:exon 40.0%
GGAGAATGAGAGGTTAATGA+TGG - chr7_2:55337813-55337832 Msa1063420:five_prime_UTR 40.0%
TGGAACAAAGATGGAGAGAA+AGG - chr7_2:55337833-55337852 Msa1063420:five_prime_UTR 40.0%
GGAACAAAGATGGAGAGAAA+GGG - chr7_2:55337834-55337853 Msa1063420:five_prime_UTR 40.0%
GAGAAAGGGAAGAACAAAGA+AGG - chr7_2:55337848-55337867 Msa1063420:five_prime_UTR 40.0%
AAGGATTAGAGAGGAAGCTA+GGG - chr7_2:55337867-55337886 Msa1063420:five_prime_UTR 40.0%
GAAGGAGGGTCAAAGAAGAA+AGG - chr7_2:55337520-55337539 Msa1063420:intron 45.0%
AGGAGGGTCAAAGAAGAAAG+GGG - chr7_2:55337522-55337541 Msa1063420:intron 45.0%
AGAAAGTGAGGGAGATCACA+AGG - chr7_2:55337585-55337604 Msa1063420:intron 45.0%
GAAAGTGAGGGAGATCACAA+GGG - chr7_2:55337586-55337605 Msa1063420:intron 45.0%
GCAAATGGAAGCTCAATGGA+TGG - chr7_2:55337720-55337739 Msa1063420:CDS 45.0%
!! GATGGAAGCATTTGAGGCAA+GGG - chr7_2:55337738-55337757 Msa1063420:CDS 45.0%
GGAGAATGAGAGGAGATTGA+AGG - chr7_2:55337759-55337778 Msa1063420:CDS 45.0%
TGAGAGGAGATTGAAGGAGA+TGG - chr7_2:55337765-55337784 Msa1063420:CDS 45.0%
GATGGAGTGGAGACAAAGAA+TGG - chr7_2:55337783-55337802 Msa1063420:exon 45.0%
!! TGGAAGCATTGGAGAATGAG+AGG - chr7_2:55337803-55337822 Msa1063420:five_prime_UTR 45.0%
GAAGGATTAGAGAGGAAGCT+AGG - chr7_2:55337866-55337885 Msa1063420:five_prime_UTR 45.0%
GAAGGAGGGTCAAAGAAGAA+AGG - chr7_2:55337520-55337539 Msa1063420:intron 45.0%
AGGAGGGTCAAAGAAGAAAG+GGG - chr7_2:55337522-55337541 Msa1063420:intron 45.0%
AGAAAGTGAGGGAGATCACA+AGG - chr7_2:55337585-55337604 Msa1063420:intron 45.0%
GAAAGTGAGGGAGATCACAA+GGG - chr7_2:55337586-55337605 Msa1063420:intron 45.0%
GCAAATGGAAGCTCAATGGA+TGG - chr7_2:55337720-55337739 Msa1063420:CDS 45.0%
!! GATGGAAGCATTTGAGGCAA+GGG - chr7_2:55337738-55337757 Msa1063420:CDS 45.0%
GGAGAATGAGAGGAGATTGA+AGG - chr7_2:55337759-55337778 Msa1063420:CDS 45.0%
TGAGAGGAGATTGAAGGAGA+TGG - chr7_2:55337765-55337784 Msa1063420:CDS 45.0%
GATGGAGTGGAGACAAAGAA+TGG - chr7_2:55337783-55337802 Msa1063420:exon 45.0%
!! TGGAAGCATTGGAGAATGAG+AGG - chr7_2:55337803-55337822 Msa1063420:five_prime_UTR 45.0%
GAAGGATTAGAGAGGAAGCT+AGG - chr7_2:55337866-55337885 Msa1063420:five_prime_UTR 45.0%
CAGAACAGTGCAAGTGCAAG+TGG - chr7_2:55336869-55336888 Msa1063420:CDS 50.0%
! ATGCTATGGGCTGAAGCAGA+AGG - chr7_2:55337502-55337521 Msa1063420:intron 50.0%
! TATGGGCTGAAGCAGAAGGA+GGG - chr7_2:55337506-55337525 Msa1063420:intron 50.0%
! AGGGGTGCATGTATCTTCTG+AGG - chr7_2:55337540-55337559 Msa1063420:intron 50.0%
!! GGATGGAAGCATTTGAGGCA+AGG - chr7_2:55337737-55337756 Msa1063420:CDS 50.0%
TTGAGGCAAGGGAGAATGAG+AGG - chr7_2:55337749-55337768 Msa1063420:CDS 50.0%
GGAGATTGAAGGAGATGGAG+TGG - chr7_2:55337770-55337789 Msa1063420:CDS 50.0%
CAGAACAGTGCAAGTGCAAG+TGG - chr7_2:55336869-55336888 Msa1063420:CDS 50.0%
! ATGCTATGGGCTGAAGCAGA+AGG - chr7_2:55337502-55337521 Msa1063420:intron 50.0%
! TATGGGCTGAAGCAGAAGGA+GGG - chr7_2:55337506-55337525 Msa1063420:intron 50.0%
! AGGGGTGCATGTATCTTCTG+AGG - chr7_2:55337540-55337559 Msa1063420:intron 50.0%
!! GGATGGAAGCATTTGAGGCA+AGG - chr7_2:55337737-55337756 Msa1063420:CDS 50.0%
TTGAGGCAAGGGAGAATGAG+AGG - chr7_2:55337749-55337768 Msa1063420:CDS 50.0%
GGAGATTGAAGGAGATGGAG+TGG - chr7_2:55337770-55337789 Msa1063420:CDS 50.0%
! CTATGGGCTGAAGCAGAAGG+AGG - chr7_2:55337505-55337524 Msa1063420:intron 55.0%
! CTATGGGCTGAAGCAGAAGG+AGG - chr7_2:55337505-55337524 Msa1063420:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 55336612 55337951 55336612 ID=Msa1063420;Name=Msa1063420
chr7_2 mRNA 55336612 55337951 55336612 ID=Msa1063420-mRNA-1;Parent=Msa1063420;Name=Msa1063420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=152|0|0.5|1|0|0|2|0|241
chr7_2 exon 55336612 55337185 55336612 ID=Msa1063420-mRNA-1:exon:10327;Parent=Msa1063420-mRNA-1
chr7_2 exon 55337648 55337951 55337648 ID=Msa1063420-mRNA-1:exon:10326;Parent=Msa1063420-mRNA-1
chr7_2 five_prime_UTR 55337800 55337951 55337800 ID=Msa1063420-mRNA-1:five_prime_utr;Parent=Msa1063420-mRNA-1
chr7_2 CDS 55337648 55337799 55337648 ID=Msa1063420-mRNA-1:cds;Parent=Msa1063420-mRNA-1
chr7_2 CDS 55336612 55337185 55336612 ID=Msa1063420-mRNA-1:cds;Parent=Msa1063420-mRNA-1
Gene Sequence

>Msa1063420

ATGATCCGTTCAGAACTAGATCAAACTTTCATGGAGACAAAGAGGAACAAACAGCTTTGGGAAGTTATCTCTAACACTATGAAGGAAAGGGTTATCATAGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTTGTTACTCGCTATAAGACTATTGTTTTGTTTATGTTTTTGGGATATAAAGGGATGTGAAACAATGGAGCTAGAAGCCATGAGACAACAATTTCCATTTTACAATGAGCTTCAAGCTATTTTTAGTGCAAGGATGCAAAGAATGCTATGGGCTGAAGCAGAAGGAGGGTCAAAGAAGAAAGGGGTGCATGTATCTTCTGAGGATGAAGAAGAGTTAGGCAATGAAGAAAGTGAGGGAGATCACAAGGGCAACATTAAAAAGAAGAAGAAAAAAGGTAAAATGATAATTGGTGGAGGAAATGATAATAGTGGTAGCAACAATTTGAAGGAGATTCTTGAGGAGTTTATGAGGCAACAAATGCAAATGGAAGCTCAATGGATGGAAGCATTTGAGGCAAGGGAGAATGAGAGGAGATTGAAGGAGATGGAGTGGAGACAAAGAATGGAAGCATTGGAGAATGAGAGGTTAATGATGGAACAAAGATGGAGAGAAAGGGAAGAACAAAGAAGGATTAGAGAGGAAGCTAGGGCTGAAAAGAGAGATGAATTAATCACTGCTTTGCTTGATAAGCTTACAAGAGAAGACATGTAG

Protein sequence

>Msa1063420

MIRSELDQTFMETKRNKQLWEVISNTMKERVIIEVQNSASASGKTLLLAIRLLFCLCFWDIKGCETMELEAMRQQFPFYNELQAIFSARMQRMLWAEAEGGSKKKGVHVSSEDEEELGNEESEGDHKGNIKKKKKKGKMIIGGGNDNSGSNNLKEILEEFMRQQMQMEAQWMEAFEARENERRLKEMEWRQRMEALENERLMMEQRWREREEQRRIREEARAEKRDELITALLDKLTREDM*