AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1109520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1109520 MtrunA17_Chr7g0243681 85.484 496 67 1 1 496 1 491 0.0 879
Msa1109520 MtrunA17_Chr7g0243631 83.200 500 82 1 1 498 1 500 0.0 855
Msa1109520 MtrunA17_Chr7g0243951 76.152 499 116 3 1 498 1 497 0.0 785
Msa1109520 MtrunA17_Chr4g0060511 74.900 502 121 3 1 498 1 501 0.0 775
Msa1109520 MtrunA17_Chr7g0243771 74.691 486 119 2 8 493 3 484 0.0 761
Msa1109520 MtrunA17_Chr7g0243801 73.225 493 124 3 1 493 1 485 0.0 754
Msa1109520 MtrunA17_Chr7g0243931 72.745 499 134 2 1 498 7 504 0.0 754
Msa1109520 MtrunA17_Chr7g0243861 74.699 498 124 2 2 498 5 501 0.0 752
Msa1109520 MtrunA17_Chr7g0235051 75.703 498 90 2 1 498 1 467 0.0 746
Msa1109520 MtrunA17_Chr7g0243761 74.297 498 98 2 1 498 1 468 0.0 723
Msa1109520 MtrunA17_Chr7g0243871 66.329 493 154 3 1 493 1 481 0.0 671
Msa1109520 MtrunA17_Chr7g0243851 66.533 499 123 3 1 498 1 456 0.0 671
Msa1109520 MtrunA17_Chr7g0243781 66.194 494 156 3 1 493 1 484 0.0 658
Msa1109520 MtrunA17_Chr5g0401851 51.633 490 233 2 5 492 4 491 0.0 525
Msa1109520 MtrunA17_Chr7g0243811 62.408 407 140 2 23 429 1 394 7.13e-180 509
Msa1109520 MtrunA17_Chr7g0243611 77.170 311 56 2 126 436 1 296 1.89e-177 499
Msa1109520 MtrunA17_Chr8g0355221 50.000 488 240 3 5 491 9 493 1.40e-171 493
Msa1109520 MtrunA17_Chr1g0165701 50.000 492 241 4 5 496 9 495 5.23e-171 491
Msa1109520 MtrunA17_Chr5g0416741 49.501 501 245 5 1 498 2 497 3.90e-168 484
Msa1109520 MtrunA17_Chr6g0463891 49.795 488 240 5 10 495 11 495 1.11e-163 473
Msa1109520 MtrunA17_Chr5g0416821 48.185 496 235 5 5 494 4 483 4.50e-157 455
Msa1109520 MtrunA17_Chr7g0243711 79.921 254 50 1 245 498 78 330 8.40e-145 418
Msa1109520 MtrunA17_Chr7g0243711 88.608 79 9 0 1 79 1 79 7.18e-42 152
Msa1109520 MtrunA17_Chr4g0044511 44.306 483 254 8 7 486 36 506 3.01e-134 398
Msa1109520 MtrunA17_Chr8g0366391 44.444 495 252 11 1 487 1 480 4.37e-130 386
Msa1109520 MtrunA17_Chr4g0044501 44.130 494 253 11 1 487 1 478 5.46e-126 376
Msa1109520 MtrunA17_Chr4g0066221 41.992 512 255 13 1 493 1 489 8.77e-126 375
Msa1109520 MtrunA17_Chr4g0066151 42.510 494 248 11 10 491 17 486 6.19e-122 365
Msa1109520 MtrunA17_Chr4g0066261 40.945 508 267 12 1 493 1 490 7.04e-121 363
Msa1109520 MtrunA17_Chr4g0066201 43.145 496 239 15 10 492 17 482 4.91e-119 358
Msa1109520 MtrunA17_Chr4g0066131 41.935 496 252 10 10 493 12 483 6.73e-119 358
Msa1109520 MtrunA17_Chr4g0014061 39.506 486 280 5 10 493 8 481 1.25e-117 354
Msa1109520 MtrunA17_Chr4g0044521 42.116 482 259 7 8 487 6 469 7.71e-117 352
Msa1109520 MtrunA17_Chr5g0419771 41.988 493 269 11 6 488 31 516 2.42e-116 352
Msa1109520 MtrunA17_Chr8g0374971 41.141 491 270 7 10 493 11 489 2.30e-115 349
Msa1109520 MtrunA17_Chr4g0066281 41.752 491 253 11 10 493 11 475 7.96e-115 347
Msa1109520 MtrunA17_Chr8g0374901 41.548 491 266 8 10 493 11 487 5.45e-114 345
Msa1109520 MtrunA17_Chr1g0179901 38.264 507 284 11 1 491 7 500 5.81e-114 345
Msa1109520 MtrunA17_Chr7g0275681 39.916 476 277 5 11 484 12 480 1.98e-112 341
Msa1109520 MtrunA17_Chr7g0265151 40.000 495 274 13 1 484 1 483 2.09e-112 341
Msa1109520 MtrunA17_Chr8g0350881 41.414 495 263 9 10 493 11 489 5.33e-112 340
Msa1109520 MtrunA17_Chr4g0066171 40.400 500 248 14 10 493 20 485 2.22e-110 336
Msa1109520 MtrunA17_Chr7g0265041 40.845 497 272 12 1 484 1 488 1.49e-108 332
Msa1109520 MtrunA17_Chr6g0463861 40.000 500 265 12 1 488 1 477 6.68e-108 329
Msa1109520 MtrunA17_Chr4g0011051 37.702 496 282 11 9 488 7 491 1.20e-107 329
Msa1109520 MtrunA17_Chr7g0265141 39.549 488 274 10 8 483 6 484 1.70e-106 326
Msa1109520 MtrunA17_Chr7g0243921 71.362 213 56 1 2 214 31 238 4.96e-106 316
Msa1109520 MtrunA17_Chr2g0294931 39.844 512 267 13 1 493 1 490 1.84e-105 323
Msa1109520 MtrunA17_Chr8g0374931 39.139 511 268 13 1 491 1 488 2.67e-105 323
Msa1109520 MtrunA17_Chr7g0243911 75.743 202 48 1 268 469 15 215 6.03e-105 312
Msa1109520 MtrunA17_Chr6g0463851 39.370 508 260 13 1 485 1 483 3.87e-104 320
Msa1109520 MtrunA17_Chr5g0419761 39.592 490 282 9 10 489 8 493 3.99e-104 320
Msa1109520 MtrunA17_Chr8g0374941 42.073 492 260 9 10 491 948 1424 6.79e-104 339
Msa1109520 MtrunA17_Chr8g0374941 41.042 480 258 9 1 470 1 465 8.53e-99 325
Msa1109520 MtrunA17_Chr8g0374941 41.525 472 253 8 1 463 466 923 6.50e-96 317
Msa1109520 MtrunA17_Chr7g0265111 38.446 502 292 9 3 494 31 525 1.85e-101 315
Msa1109520 MtrunA17_Chr2g0294921 38.477 512 270 13 1 491 150 637 2.89e-101 317
Msa1109520 MtrunA17_Chr5g0410941 38.235 510 270 13 1 491 13 496 3.70e-101 312
Msa1109520 MtrunA17_Chr7g0218311 38.596 513 269 13 1 493 6 492 8.60e-100 309
Msa1109520 MtrunA17_Chr4g0044481 42.579 411 193 7 11 414 27 401 3.37e-98 302
Msa1109520 MtrunA17_Chr5g0428081 37.647 510 275 13 1 491 1 486 1.38e-96 300
Msa1109520 MtrunA17_Chr7g0265051 36.456 491 296 11 9 491 7 489 1.55e-96 301
Msa1109520 MtrunA17_Chr7g0265101 35.644 505 287 12 9 493 7 493 1.42e-95 298
Msa1109520 MtrunA17_Chr7g0231631 48.772 285 125 5 216 498 8 273 3.48e-79 248
Msa1109520 MtrunA17_Chr2g0294941 38.544 371 187 13 119 469 15 364 7.07e-70 228
Msa1109520 MtrunA17_Chr7g0243721 72.143 140 39 0 186 325 1 140 3.80e-63 202
Msa1109520 MtrunA17_Chr8g0361411 31.493 489 289 13 9 488 6 457 3.03e-60 204
Msa1109520 MtrunA17_Chr5g0440421 28.431 510 322 11 3 487 2 493 3.47e-60 205
Msa1109520 MtrunA17_Chr6g0464871 29.779 497 293 18 1 484 13 466 8.48e-56 193
Msa1109520 MtrunA17_Chr6g0464861 27.944 501 296 18 1 484 1 453 1.80e-55 192
Msa1109520 MtrunA17_Chr6g0454261 29.249 506 305 14 11 492 10 486 2.32e-55 192
Msa1109520 MtrunA17_Chr5g0414331 30.426 493 292 17 1 484 3 453 2.34e-55 192
Msa1109520 MtrunA17_Chr6g0464881 27.968 497 312 13 1 489 1 459 4.33e-55 191
Msa1109520 MtrunA17_Chr2g0329111 28.454 485 289 15 12 470 7 459 5.83e-55 191
Msa1109520 MtrunA17_Chr6g0464841 28.858 499 295 19 1 484 1 454 9.79e-55 190
Msa1109520 MtrunA17_Chr7g0250001 29.940 501 271 20 8 484 3 447 1.18e-54 190
Msa1109520 MtrunA17_Chr6g0454191 28.210 514 302 14 3 484 2 480 1.78e-54 190
Msa1109520 MtrunA17_Chr8g0377921 30.453 486 294 15 12 482 5 461 2.59e-54 189
Msa1109520 MtrunA17_Chr5g0414321 29.920 498 298 17 1 489 1 456 4.53e-54 188
Msa1109520 MtrunA17_Chr3g0098111 27.935 494 317 12 6 486 4 471 5.61e-54 188
Msa1109520 MtrunA17_Chr6g0454401 28.180 511 306 13 3 484 2 480 7.72e-54 188
Msa1109520 MtrunA17_Chr7g0231651 48.000 200 99 2 5 199 4 203 1.38e-53 179
Msa1109520 MtrunA17_Chr7g0232391 30.677 502 272 20 10 480 5 461 2.33e-53 187
Msa1109520 MtrunA17_Chr7g0232411 29.470 509 283 19 10 487 5 468 2.90e-53 186
Msa1109520 MtrunA17_Chr3g0078841 28.283 495 307 13 11 484 10 477 5.33e-53 186
Msa1109520 MtrunA17_Chr2g0307961 31.493 489 287 18 11 484 13 468 5.55e-53 186
Msa1109520 MtrunA17_Chr6g0464921 29.259 499 294 18 1 484 1 455 6.44e-53 185
Msa1109520 MtrunA17_Chr6g0454331 27.011 522 293 13 6 484 2 478 7.18e-53 186
Msa1109520 MtrunA17_Chr7g0217881 30.769 494 280 18 11 484 10 461 1.23e-52 184
Msa1109520 MtrunA17_Chr3g0118671 29.800 500 297 17 9 484 4 473 2.00e-52 184
Msa1109520 MtrunA17_Chr7g0249931 27.439 492 301 14 6 484 35 483 8.50e-52 183
Msa1109520 MtrunA17_Chr6g0454341 28.346 508 290 19 11 484 10 477 8.52e-52 182
Msa1109520 MtrunA17_Chr3g0118711 29.264 516 297 18 1 484 1 480 9.13e-52 182
Msa1109520 MtrunA17_Chr3g0121991 28.088 502 308 18 11 489 79 550 1.05e-51 184
Msa1109520 MtrunA17_Chr3g0112771 29.883 512 286 17 1 492 1 459 1.36e-51 182
Msa1109520 MtrunA17_Chr6g0454291 28.740 508 300 14 6 484 2 476 2.29e-51 181
Msa1109520 MtrunA17_Chr2g0278711 29.259 499 303 14 11 488 11 480 3.60e-51 181
Msa1109520 MtrunA17_Chr4g0050341 29.505 505 294 18 11 485 19 491 4.15e-51 181
Msa1109520 MtrunA17_Chr5g0426431 29.800 500 301 16 6 484 7 477 9.37e-51 180
Msa1109520 MtrunA17_Chr6g0453951 27.733 494 313 12 11 484 57 526 1.33e-50 181
Msa1109520 MtrunA17_Chr8g0336331 27.000 500 306 13 11 484 10 476 1.40e-50 179
Msa1109520 MtrunA17_Chr1g0207971 26.465 495 316 15 6 490 3 459 2.13e-50 178
Msa1109520 MtrunA17_Chr8g0359821 28.112 498 304 11 11 484 10 477 5.08e-50 178
Msa1109520 MtrunA17_Chr3g0092641 30.400 500 298 18 6 484 7 477 7.08e-50 177
Msa1109520 MtrunA17_Chr6g0459311 30.081 492 283 15 12 480 14 467 1.03e-49 177
Msa1109520 MtrunA17_Chr6g0454321 29.006 493 296 18 11 479 10 472 1.23e-49 180
Msa1109520 MtrunA17_Chr8g0380531 29.412 493 300 14 4 485 3 458 1.37e-49 176
Msa1109520 MtrunA17_Chr6g0454361 28.457 499 303 14 11 484 11 480 1.57e-49 177
Msa1109520 MtrunA17_Chr3g0118701 29.045 513 280 20 11 484 15 482 2.10e-49 176
Msa1109520 MtrunA17_Chr7g0249981 28.543 494 301 17 1 484 15 466 2.17e-49 176
Msa1109520 MtrunA17_Chr6g0454141 26.761 497 314 13 11 484 10 479 2.24e-49 176
Msa1109520 MtrunA17_Chr3g0118691 29.249 506 288 18 11 484 15 482 2.30e-49 176
Msa1109520 MtrunA17_Chr6g0486251 29.376 497 288 16 8 480 3 460 2.66e-49 176
Msa1109520 MtrunA17_Chr6g0486201 29.376 497 288 16 8 480 3 460 2.66e-49 176
Msa1109520 MtrunA17_Chr7g0218831 29.461 482 278 15 11 481 6 436 3.21e-49 175
Msa1109520 MtrunA17_Chr6g0454181 27.075 506 301 15 11 484 10 479 5.46e-49 175
Msa1109520 MtrunA17_Chr5g0420801 27.165 508 296 17 6 487 2 461 5.98e-49 174
Msa1109520 MtrunA17_Chr6g0454301 27.968 497 306 15 11 484 263 730 6.71e-49 179
Msa1109520 MtrunA17_Chr6g0454301 33.610 241 142 4 243 483 6 228 2.01e-33 134
Msa1109520 MtrunA17_Chr3g0122001 28.169 497 304 16 11 484 486 952 1.10e-48 180
Msa1109520 MtrunA17_Chr3g0122001 27.112 509 317 16 11 495 6 484 5.23e-46 172
Msa1109520 MtrunA17_Chr6g0454201 27.976 504 299 12 11 484 11 480 1.24e-48 174
Msa1109520 MtrunA17_Chr8g0361371 28.261 506 299 15 1 481 1 467 1.26e-48 174
Msa1109520 MtrunA17_Chr3g0112761 29.577 497 278 16 11 487 8 452 1.42e-48 173
Msa1109520 MtrunA17_Chr1g0207981 27.621 496 319 14 2 484 4 472 6.00e-48 172
Msa1109520 MtrunA17_Chr1g0161351 27.634 503 320 14 1 488 28 501 8.66e-48 172
Msa1109520 MtrunA17_Chr1g0159551 29.541 501 259 18 6 473 9 448 1.27e-47 171
Msa1109520 MtrunA17_Chr7g0218821 29.675 492 278 17 11 482 5 448 1.53e-47 171
Msa1109520 MtrunA17_Chr8g0369341 27.713 516 293 15 6 487 2 471 1.71e-47 171
Msa1109520 MtrunA17_Chr6g0454151 27.711 498 306 13 11 484 10 477 2.47e-47 171
Msa1109520 MtrunA17_Chr3g0118771 27.976 504 297 15 11 484 21 488 2.90e-47 171
Msa1109520 MtrunA17_Chr6g0462551 28.630 489 282 13 21 482 14 462 3.26e-47 170
Msa1109520 MtrunA17_Chr8g0377941 28.713 505 289 16 6 484 2 461 3.42e-47 170
Msa1109520 MtrunA17_Chr6g0454131 26.939 490 321 11 11 484 10 478 8.88e-47 169
Msa1109520 MtrunA17_Chr7g0218841 28.838 482 282 16 11 481 6 437 1.25e-46 168
Msa1109520 MtrunA17_Chr8g0357361 45.320 203 104 5 211 413 57 252 1.48e-46 163
Msa1109520 MtrunA17_Chr6g0449931 35.736 333 156 10 186 487 165 470 1.24e-45 166
Msa1109520 MtrunA17_Chr8g0370941 28.516 512 283 17 11 477 8 481 1.36e-45 166
Msa1109520 MtrunA17_Chr7g0232341 35.517 290 145 9 217 489 207 471 1.61e-45 166
Msa1109520 MtrunA17_Chr7g0232331 27.833 503 298 17 11 487 6 469 1.76e-45 165
Msa1109520 MtrunA17_Chr6g0454271 33.333 297 176 6 191 484 9 286 1.80e-45 160
Msa1109520 MtrunA17_Chr7g0275511 29.091 495 286 16 12 480 16 471 1.82e-45 166
Msa1109520 MtrunA17_Chr7g0218811 27.423 485 287 15 11 482 15 447 2.24e-45 164
Msa1109520 MtrunA17_Chr1g0207931 25.963 493 273 13 5 485 86 498 2.61e-45 166
Msa1109520 MtrunA17_Chr8g0347281 28.313 498 280 16 12 480 19 468 4.45e-45 164
Msa1109520 MtrunA17_Chr5g0423981 26.994 489 288 14 11 484 10 444 4.81e-45 164
Msa1109520 MtrunA17_Chr6g0453961 26.104 498 317 12 11 484 19 489 5.96e-45 164
Msa1109520 MtrunA17_Chr1g0173121 29.485 485 283 18 6 473 9 451 8.55e-45 163
Msa1109520 MtrunA17_Chr5g0448521 27.634 503 295 17 9 482 3 465 8.96e-45 163
Msa1109520 MtrunA17_Chr6g0454211 27.006 511 311 13 3 484 289 766 1.29e-44 167
Msa1109520 MtrunA17_Chr8g0334831 27.944 501 298 14 12 481 7 475 1.40e-44 163
Msa1109520 MtrunA17_Chr4g0053501 28.514 498 308 16 1 484 1 464 1.87e-44 163
Msa1109520 MtrunA17_Chr6g0454121 27.400 500 306 14 11 484 10 478 1.91e-44 163
Msa1109520 MtrunA17_Chr8g0335161 27.767 497 292 17 11 480 6 462 4.04e-44 161
Msa1109520 MtrunA17_Chr6g0452771 26.839 503 306 14 11 484 10 479 4.24e-44 162
Msa1109520 MtrunA17_Chr8g0339451 37.193 285 136 9 215 480 199 459 7.28e-44 161
Msa1109520 MtrunA17_Chr1g0207951 26.939 490 307 15 10 484 655 1108 8.59e-44 166
Msa1109520 MtrunA17_Chr1g0207951 25.880 483 317 14 10 485 123 571 2.49e-42 161
Msa1109520 MtrunA17_Chr4g0066141 47.337 169 88 1 325 493 193 360 1.23e-43 157
Msa1109520 MtrunA17_Chr4g0066141 36.181 199 105 5 39 234 8 187 5.11e-27 112
Msa1109520 MtrunA17_Chr8g0335141 36.170 282 146 6 217 487 213 471 1.51e-43 160
Msa1109520 MtrunA17_Chr8g0382021 27.475 495 282 16 16 481 39 485 1.55e-43 160
Msa1109520 MtrunA17_Chr6g0454351 28.039 510 274 19 11 484 12 464 1.88e-43 160
Msa1109520 MtrunA17_Chr1g0207861 27.146 501 312 17 6 486 3 470 1.92e-43 160
Msa1109520 MtrunA17_Chr1g0207831 26.210 496 308 18 10 485 7 464 4.23e-43 159
Msa1109520 MtrunA17_Chr3g0079731 26.680 506 300 18 12 481 7 477 5.44e-43 159
Msa1109520 MtrunA17_Chr6g0462521 34.185 313 158 9 187 480 166 449 8.59e-43 158
Msa1109520 MtrunA17_Chr8g0347271 28.659 492 286 17 12 480 20 469 1.48e-42 157
Msa1109520 MtrunA17_Chr8g0334851 33.934 333 167 11 180 489 172 474 3.18e-42 156
Msa1109520 MtrunA17_Chr7g0243731 83.750 80 13 0 340 419 1 80 6.20e-42 144
Msa1109520 MtrunA17_Chr4g0053321 27.459 488 308 14 21 493 36 492 6.45e-42 156
Msa1109520 MtrunA17_Chr7g0232401 37.193 285 139 8 217 486 210 469 8.13e-42 155
Msa1109520 MtrunA17_Chr8g0373301 35.889 287 138 8 217 486 211 468 1.08e-41 155
Msa1109520 MtrunA17_Chr5g0412101 27.519 516 300 20 1 486 1 472 1.10e-41 155
Msa1109520 MtrunA17_Chr7g0218791 27.743 483 298 16 11 483 5 446 1.40e-41 154
Msa1109520 MtrunA17_Chr8g0336691 35.836 293 146 9 205 480 1108 1375 1.42e-41 159
Msa1109520 MtrunA17_Chr8g0336691 27.953 508 295 19 10 488 12 477 1.92e-41 159
Msa1109520 MtrunA17_Chr8g0336691 36.823 277 129 11 217 488 681 916 1.08e-35 142
Msa1109520 MtrunA17_Chr5g0412131 28.486 502 291 20 11 486 12 471 1.50e-41 154
Msa1109520 MtrunA17_Chr8g0339631 33.636 330 164 10 188 487 167 471 1.55e-41 154
Msa1109520 MtrunA17_Chr5g0393591 24.797 492 281 14 11 485 17 436 1.60e-41 154
Msa1109520 MtrunA17_Chr8g0365811 25.948 501 330 15 1 486 485 959 1.89e-41 159
Msa1109520 MtrunA17_Chr8g0365811 25.586 469 292 15 6 448 4 441 5.99e-37 145
Msa1109520 MtrunA17_Chr8g0339601 34.713 314 158 10 180 471 29 317 2.18e-41 151
Msa1109520 MtrunA17_Chr5g0442491 27.634 503 296 17 12 482 6 472 2.96e-41 154
Msa1109520 MtrunA17_Chr8g0336651 36.213 301 138 9 204 480 969 1239 3.26e-41 158
Msa1109520 MtrunA17_Chr8g0336651 34.892 278 129 7 217 488 547 778 1.50e-38 150
Msa1109520 MtrunA17_Chr8g0336651 34.483 290 154 8 204 480 194 460 6.93e-37 145
Msa1109520 MtrunA17_Chr6g0462571 27.016 496 296 15 12 482 5 459 3.79e-41 154
Msa1109520 MtrunA17_Chr5g0442521 26.369 493 316 14 12 482 6 473 3.86e-41 154
Msa1109520 MtrunA17_Chr7g0232311 32.907 313 170 7 183 481 174 460 5.15e-41 153
Msa1109520 MtrunA17_Chr5g0431441 28.067 481 292 17 11 477 18 458 7.64e-41 152
Msa1109520 MtrunA17_Chr6g0462531 27.016 496 298 18 12 480 5 463 7.99e-41 152
Msa1109520 MtrunA17_Chr5g0412111 26.761 497 305 16 11 486 5 463 8.95e-41 152
Msa1109520 MtrunA17_Chr8g0339461 35.842 279 134 9 215 473 207 460 1.03e-40 152
Msa1109520 MtrunA17_Chr3g0118661 26.984 504 299 17 11 483 13 478 1.28e-40 152
Msa1109520 MtrunA17_Chr5g0442541 27.510 498 296 18 11 482 5 463 1.55e-40 152
Msa1109520 MtrunA17_Chr6g0454221 37.190 242 133 5 243 483 6 229 3.54e-40 147
Msa1109520 MtrunA17_Chr1g0153451 35.252 278 141 8 217 480 207 459 2.71e-39 148
Msa1109520 MtrunA17_Chr8g0339441 40.909 220 102 5 275 479 218 424 3.95e-39 147
Msa1109520 MtrunA17_Chr1g0153461 37.445 227 117 4 273 487 2 215 6.66e-39 140
Msa1109520 MtrunA17_Chr5g0442581 27.255 499 305 19 12 482 6 474 1.60e-38 147
Msa1109520 MtrunA17_Chr5g0431361 27.181 493 293 14 11 486 12 455 1.77e-38 145
Msa1109520 MtrunA17_Chr2g0302961 27.146 501 304 18 8 484 2 465 1.82e-38 146
Msa1109520 MtrunA17_Chr6g0462541 39.631 217 115 4 269 482 258 461 1.92e-38 146
Msa1109520 MtrunA17_Chr3g0118751 26.044 503 279 15 11 484 6 444 3.92e-38 145
Msa1109520 MtrunA17_Chr7g0249961 39.048 210 109 5 275 484 69 259 7.57e-38 139
Msa1109520 MtrunA17_Chr5g0403641 32.975 279 157 5 217 480 235 498 7.86e-38 145
Msa1109520 MtrunA17_Chr2g0278721 27.848 474 286 18 4 460 8 442 1.38e-37 147
Msa1109520 MtrunA17_Chr2g0278721 24.370 476 297 18 10 460 516 953 3.46e-26 112
Msa1109520 MtrunA17_Chr3g0118721 34.202 307 163 12 191 484 9 289 2.24e-37 139
Msa1109520 MtrunA17_Chr8g0334861 34.507 284 140 8 217 481 204 460 2.48e-37 143
Msa1109520 MtrunA17_Chr8g0336731 32.484 314 174 9 188 481 192 487 5.26e-37 142
Msa1109520 MtrunA17_Chr8g0336741 34.520 281 140 8 217 480 214 467 5.55e-37 142
Msa1109520 MtrunA17_Chr5g0426401 32.534 292 174 7 176 463 16 288 7.38e-37 138
Msa1109520 MtrunA17_Chr6g0454251 26.961 408 249 14 11 388 7 395 3.46e-36 138
Msa1109520 MtrunA17_Chr4g0032331 27.668 506 293 21 1 487 1 452 3.77e-36 139
Msa1109520 MtrunA17_Chr5g0442601 27.655 499 303 21 12 482 405 873 4.03e-36 142
Msa1109520 MtrunA17_Chr5g0442601 29.934 304 165 10 121 410 64 333 3.47e-26 112
Msa1109520 MtrunA17_Chr5g0442511 32.432 296 169 10 204 485 216 494 7.04e-36 139
Msa1109520 MtrunA17_Chr5g0442561 23.742 497 323 15 11 482 5 470 1.03e-35 138
Msa1109520 MtrunA17_Chr7g0241801 26.786 504 256 17 9 497 7 412 7.25e-35 135
Msa1109520 MtrunA17_Chr2g0302991 27.525 505 294 19 8 484 2 462 1.13e-34 135
Msa1109520 MtrunA17_Chr5g0431421 25.413 484 316 13 8 486 7 450 1.93e-34 134
Msa1109520 MtrunA17_Chr2g0278741 26.250 480 292 16 1 460 87 524 2.91e-34 135
Msa1109520 MtrunA17_Chr5g0401721 26.273 491 321 15 9 484 6 470 4.63e-34 134
Msa1109520 MtrunA17_Chr4g0042931 27.545 501 306 17 6 486 2 465 1.69e-33 132
Msa1109520 MtrunA17_Chr4g0069611 26.427 473 277 15 10 460 14 437 1.80e-33 132
Msa1109520 MtrunA17_Chr5g0432731 29.066 289 173 6 204 487 38 299 4.29e-33 127
Msa1109520 MtrunA17_Chr6g0454171 28.671 286 167 6 202 484 58 309 5.82e-33 127
Msa1109520 MtrunA17_Chr8g0355011 26.133 375 205 7 121 484 48 361 6.14e-33 129
Msa1109520 MtrunA17_Chr5g0448551 27.924 419 247 19 12 410 8 391 1.13e-32 129
Msa1109520 MtrunA17_Chr5g0431401 25.207 484 317 14 8 486 7 450 1.16e-32 129
Msa1109520 MtrunA17_Chr3g0106231 26.526 475 293 19 11 477 18 444 1.32e-32 129
Msa1109520 MtrunA17_Chr5g0429681 25.780 481 319 17 12 482 45 497 2.72e-32 129
Msa1109520 MtrunA17_Chr6g0464091 28.085 470 280 20 10 460 17 447 3.39e-32 128
Msa1109520 MtrunA17_Chr5g0431371 25.567 485 308 15 11 486 10 450 1.34e-31 126
Msa1109520 MtrunA17_Chr5g0409591 25.648 386 228 11 118 459 92 462 1.37e-31 127
Msa1109520 MtrunA17_Chr4g0072761 37.156 218 113 6 267 481 256 452 1.42e-31 126
Msa1109520 MtrunA17_Chr7g0241781 25.641 468 269 14 9 461 7 410 1.49e-31 126
Msa1109520 MtrunA17_Chr3g0079711 36.923 195 97 4 301 481 3 185 2.34e-31 119
Msa1109520 MtrunA17_Chr4g0072771 26.946 501 287 19 9 486 23 467 4.74e-31 125
Msa1109520 MtrunA17_Chr5g0429711 25.620 484 315 17 12 484 12 461 8.51e-31 124
Msa1109520 MtrunA17_Chr6g0482061 26.441 503 301 19 1 471 1 466 9.67e-31 124
Msa1109520 MtrunA17_Chr4g0042891 30.584 291 168 8 207 486 200 467 1.83e-30 123
Msa1109520 MtrunA17_Chr2g0302851 27.137 468 280 17 10 460 15 438 2.51e-30 123
Msa1109520 MtrunA17_Chr8g0336251 25.751 466 305 14 6 458 2 439 1.16e-29 121
Msa1109520 MtrunA17_Chr8g0336321 25.966 466 304 15 6 458 2 439 1.28e-29 121
Msa1109520 MtrunA17_Chr6g0454371 34.574 188 105 4 297 484 1 170 3.42e-29 113
Msa1109520 MtrunA17_Chr1g0196851 25.549 501 304 16 8 487 46 498 3.48e-29 120
Msa1109520 MtrunA17_Chr3g0106251 30.337 267 155 8 214 477 48 286 3.52e-29 117
Msa1109520 MtrunA17_Chr6g0466831 24.733 469 300 18 10 465 17 445 3.90e-29 119
Msa1109520 MtrunA17_Chr6g0466841 24.733 469 300 17 10 465 17 445 2.65e-28 117
Msa1109520 MtrunA17_Chr7g0232351 40.217 184 85 6 217 387 207 378 8.13e-28 114
Msa1109520 MtrunA17_Chr4g0029151 24.790 476 281 14 7 455 16 441 4.56e-27 114
Msa1109520 MtrunA17_Chr4g0029131 24.409 508 320 14 7 497 8 468 7.79e-27 114
Msa1109520 MtrunA17_Chr4g0039881 25.764 458 275 18 21 459 2 413 8.62e-26 109
Msa1109520 MtrunA17_Chr4g0040691 24.364 472 298 17 6 459 3 433 1.02e-25 109
Msa1109520 MtrunA17_Chr8g0367221 26.747 415 254 14 10 402 797 1183 2.54e-25 110
Msa1109520 MtrunA17_Chr8g0367221 26.366 421 247 17 10 402 11 396 4.77e-21 97.4
Msa1109520 MtrunA17_Chr8g0367221 31.132 212 127 7 277 486 1548 1742 1.50e-18 89.7
Msa1109520 MtrunA17_Chr8g0337381 40.000 140 71 3 348 487 2 128 4.76e-24 97.4
Msa1109520 MtrunA17_Chr6g0454231 30.996 271 125 10 217 484 7 218 5.04e-24 104
Msa1109520 MtrunA17_Chr3g0092031 33.152 184 108 5 277 460 6 174 7.49e-24 99.4
Msa1109520 MtrunA17_Chr4g0040711 24.528 477 291 19 6 459 3 433 1.58e-23 103
Msa1109520 MtrunA17_Chr8g0336261 35.714 154 82 2 297 450 1 137 1.89e-23 95.9
Msa1109520 MtrunA17_Chr7g0250021 27.374 358 196 11 6 339 7 324 1.89e-23 101
Msa1109520 MtrunA17_Chr2g0283041 22.811 491 326 16 8 484 4 455 2.54e-22 99.8
Msa1109520 MtrunA17_Chr1g0207881 36.029 136 74 3 352 485 261 385 1.09e-21 97.1
Msa1109520 MtrunA17_Chr5g0427571 30.645 248 138 8 222 458 49 273 2.12e-21 94.7
Msa1109520 MtrunA17_Chr5g0431431 28.879 232 129 5 209 439 147 343 2.94e-21 95.1
Msa1109520 MtrunA17_Chr2g0319731 23.890 473 309 15 1 459 15 450 7.38e-21 95.5
Msa1109520 MtrunA17_Chr2g0319801 25.159 473 295 16 5 459 2 433 1.08e-20 94.7
Msa1109520 MtrunA17_Chr2g0319751 24.512 461 303 15 10 459 484 910 3.36e-20 94.4
Msa1109520 MtrunA17_Chr2g0319751 22.440 459 291 14 10 459 7 409 1.17e-16 83.2
Msa1109520 MtrunA17_Chr2g0319791 24.086 465 300 17 10 459 7 433 9.09e-20 92.0
Msa1109520 MtrunA17_Chr2g0319761 23.874 444 294 12 10 443 7 416 1.54e-19 91.3
Msa1109520 MtrunA17_Chr4g0066231 46.250 80 38 2 386 463 1 77 9.07e-16 72.4
Msa1109520 MtrunA17_Chr6g0453981 31.788 151 89 4 179 321 60 204 3.46e-14 72.0
Msa1109520 MtrunA17_Chr7g0272701 32.520 123 80 2 105 224 30 152 1.51e-13 68.2
Msa1109520 MtrunA17_Chr6g0453941 30.065 153 94 3 177 321 110 257 3.14e-13 70.1
Msa1109520 MtrunA17_Chr6g0477011 24.359 312 204 8 10 312 15 303 1.80e-12 68.2
Msa1109520 MtrunA17_Chr6g0454391 37.931 87 40 2 359 445 8 80 7.11e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1109520 AT2G15490.3 41.176 493 267 10 6 488 2 481 2.26e-125 374
Msa1109520 AT2G15490.1 40.927 496 267 10 6 488 2 484 1.01e-124 373
Msa1109520 AT4G34131.1 42.394 493 262 11 3 486 2 481 2.15e-124 372
Msa1109520 AT2G36770.1 40.000 495 288 6 2 491 5 495 1.57e-122 368
Msa1109520 AT2G15480.2 40.120 501 277 11 3 488 2 494 2.64e-122 367
Msa1109520 AT2G15480.1 39.394 495 279 9 3 488 2 484 8.15e-122 365
Msa1109520 AT2G36780.1 39.394 495 291 6 2 491 5 495 9.43e-120 360
Msa1109520 AT4G34135.1 42.626 495 263 10 1 486 1 483 1.82e-119 359
Msa1109520 AT2G36800.1 39.712 486 279 8 10 487 11 490 1.32e-118 358
Msa1109520 AT2G36750.1 39.630 487 284 7 10 491 9 490 1.05e-117 355
Msa1109520 AT2G36760.1 38.571 490 288 7 10 492 13 496 2.49e-114 347
Msa1109520 AT2G36790.1 39.300 486 286 6 10 490 12 493 4.38e-114 346
Msa1109520 AT4G34138.1 38.710 496 274 12 8 491 8 485 1.73e-109 334
Msa1109520 AT3G53150.1 36.706 504 295 9 1 484 10 509 1.42e-99 309
Msa1109520 AT3G53160.1 36.475 488 293 10 6 484 3 482 4.45e-99 307
Msa1109520 AT4G34135.2 40.303 330 186 5 1 322 1 327 6.07e-76 242
Msa1109520 AT5G14860.1 33.849 517 267 21 1 484 1 475 4.13e-66 221
Msa1109520 AT2G16890.2 32.207 503 268 16 11 484 9 467 7.46e-66 220
Msa1109520 AT1G10400.1 31.683 505 269 17 9 484 5 462 8.95e-62 209
Msa1109520 AT1G22400.1 30.402 523 297 17 1 491 1 488 9.66e-60 204
Msa1109520 AT2G16890.3 32.385 457 238 15 11 439 9 422 2.59e-59 201
Msa1109520 AT1G73880.1 29.283 502 310 14 2 491 5 473 2.06e-58 201
Msa1109520 AT1G22380.1 29.209 493 305 13 11 484 13 480 2.69e-57 198
Msa1109520 AT5G03490.1 29.424 486 295 15 11 487 19 465 4.25e-56 194
Msa1109520 AT1G22360.1 28.628 503 314 16 1 484 1 477 4.85e-52 184
Msa1109520 AT1G78270.1 29.051 506 299 17 6 484 8 480 4.98e-52 184
Msa1109520 AT1G22340.1 29.672 519 292 20 1 484 1 481 8.26e-52 183
Msa1109520 AT4G15490.1 27.105 487 314 15 11 484 8 466 9.01e-52 183
Msa1109520 AT4G15480.1 27.309 498 320 15 1 484 9 478 3.66e-51 181
Msa1109520 AT2G43820.1 28.513 491 295 14 7 486 3 448 8.39e-50 177
Msa1109520 AT1G51210.1 28.480 467 264 15 11 460 20 433 8.58e-50 176
Msa1109520 AT1G05675.1 29.184 490 282 16 11 481 6 449 1.04e-49 177
Msa1109520 AT1G22360.2 29.167 432 277 13 1 414 1 421 2.78e-49 176
Msa1109520 AT1G01420.2 30.118 508 278 19 1 477 1 462 3.46e-49 176
Msa1109520 AT4G01070.1 28.711 512 285 17 11 489 8 472 5.09e-49 176
Msa1109520 AT1G05680.1 28.689 488 287 15 11 481 6 449 5.86e-49 175
Msa1109520 AT1G06000.1 31.288 489 256 20 11 484 10 433 9.77e-49 174
Msa1109520 AT1G01420.1 30.339 501 272 19 8 477 5 459 1.30e-48 174
Msa1109520 AT5G12890.1 26.200 500 315 12 10 483 9 480 3.77e-48 173
Msa1109520 AT4G14090.1 29.209 493 288 18 6 483 8 454 4.25e-48 172
Msa1109520 AT2G43840.2 28.571 490 286 17 11 485 7 447 3.02e-47 170
Msa1109520 AT2G43840.1 28.571 490 286 17 11 485 7 447 4.19e-47 169
Msa1109520 AT3G11340.1 28.367 490 285 16 12 487 10 447 8.41e-47 169
Msa1109520 AT1G22370.2 28.235 425 276 11 6 414 8 419 1.24e-46 169
Msa1109520 AT2G31790.1 28.807 486 291 16 11 481 8 453 3.08e-46 167
Msa1109520 AT2G31750.1 28.659 492 288 17 11 484 8 454 7.06e-46 166
Msa1109520 AT3G21760.1 27.553 519 293 19 9 484 2 480 7.64e-46 167
Msa1109520 AT2G31750.2 28.106 491 292 16 11 484 8 454 9.24e-46 167
Msa1109520 AT5G05860.1 28.221 489 286 17 4 477 2 440 1.73e-45 165
Msa1109520 AT5G26310.1 29.320 515 271 21 11 485 7 468 1.94e-45 166
Msa1109520 AT3G02100.1 27.165 508 295 18 3 486 5 461 3.18e-45 165
Msa1109520 AT5G05870.1 28.081 495 299 16 5 484 2 454 3.98e-45 164
Msa1109520 AT4G15500.1 26.052 499 321 19 11 495 9 473 1.13e-44 164
Msa1109520 AT4G36770.1 29.065 492 269 17 9 467 2 446 1.17e-44 163
Msa1109520 AT1G24100.1 27.439 492 295 17 11 484 11 458 2.76e-44 162
Msa1109520 AT3G50740.1 28.489 523 275 23 11 487 7 476 3.57e-44 162
Msa1109520 AT2G30140.1 25.979 485 296 12 11 481 13 448 3.71e-44 162
Msa1109520 AT2G36970.1 26.901 513 317 16 1 491 1 477 9.82e-44 161
Msa1109520 AT2G28080.1 28.163 490 296 14 15 486 22 473 1.23e-43 161
Msa1109520 AT2G29740.1 28.876 516 293 24 1 484 1 474 1.47e-43 160
Msa1109520 AT4G15550.1 28.937 508 278 22 11 483 13 472 3.87e-43 159
Msa1109520 AT2G30140.2 25.979 485 295 13 11 481 13 447 5.24e-43 159
Msa1109520 AT3G16520.3 32.753 287 158 7 203 481 197 456 1.00e-42 158
Msa1109520 AT2G23260.1 28.016 489 296 19 9 484 8 453 1.05e-42 158
Msa1109520 AT5G66690.1 28.824 510 280 20 11 485 7 468 1.76e-42 157
Msa1109520 AT2G30150.2 27.381 504 278 18 11 487 13 455 3.19e-42 156
Msa1109520 AT4G15260.1 30.864 324 183 9 172 484 61 354 3.67e-42 154
Msa1109520 AT3G21790.1 26.408 515 302 18 9 484 2 478 5.18e-42 157
Msa1109520 AT3G21560.1 26.033 484 325 15 11 484 12 472 6.18e-42 156
Msa1109520 AT1G07260.1 27.397 511 293 22 9 484 4 471 9.40e-42 155
Msa1109520 AT5G59590.1 27.143 490 310 14 1 484 1 449 9.46e-42 155
Msa1109520 AT2G23250.1 27.463 477 284 17 21 484 8 435 2.80e-41 154
Msa1109520 AT3G46670.1 27.328 494 291 19 11 487 9 451 4.68e-41 153
Msa1109520 AT2G30150.1 27.200 500 276 18 15 487 1 439 6.98e-41 152
Msa1109520 AT3G46680.1 26.860 484 297 20 11 482 9 447 1.54e-40 152
Msa1109520 AT3G16520.1 32.727 275 150 7 203 469 197 444 1.68e-40 152
Msa1109520 AT3G55700.1 27.642 492 295 14 11 487 8 453 1.81e-40 152
Msa1109520 AT3G16520.2 32.727 275 150 7 203 469 197 444 1.96e-40 151
Msa1109520 AT3G46660.1 26.411 496 293 18 12 487 15 458 6.99e-40 150
Msa1109520 AT5G05880.1 27.345 501 295 17 5 487 2 451 1.58e-39 149
Msa1109520 AT3G21800.1 25.385 520 299 20 8 484 2 475 3.50e-39 149
Msa1109520 AT1G07250.1 27.833 503 302 21 9 484 4 472 3.52e-39 149
Msa1109520 AT5G59580.1 26.392 485 306 16 11 487 9 450 4.77e-39 147
Msa1109520 AT3G46650.1 26.582 474 283 16 11 477 10 425 6.60e-39 147
Msa1109520 AT2G18570.1 24.554 505 303 19 8 479 2 461 2.01e-38 146
Msa1109520 AT3G46700.1 25.562 489 300 14 11 486 9 446 2.06e-38 146
Msa1109520 AT1G05530.1 26.369 493 305 15 9 484 3 454 7.38e-38 144
Msa1109520 AT4G15280.2 25.665 526 303 18 1 484 26 505 5.77e-37 143
Msa1109520 AT1G01390.1 29.191 507 279 20 8 481 5 464 7.38e-37 142
Msa1109520 AT5G05890.1 26.535 505 298 17 5 487 2 455 8.35e-37 141
Msa1109520 AT1G01390.2 29.659 499 271 20 8 473 22 473 8.45e-37 142
Msa1109520 AT3G55710.1 28.112 498 295 16 11 490 8 460 1.62e-36 141
Msa1109520 AT4G15280.1 25.869 518 296 18 9 484 2 473 2.00e-36 141
Msa1109520 AT2G29730.1 25.911 494 320 17 10 488 4 466 4.55e-36 140
Msa1109520 AT2G26480.1 26.369 493 287 16 9 481 6 442 9.22e-36 139
Msa1109520 AT3G46690.1 25.462 487 308 10 11 486 9 451 5.91e-35 136
Msa1109520 AT5G05900.1 26.653 499 284 19 8 482 5 445 9.30e-35 135
Msa1109520 AT5G38010.1 26.044 503 303 17 1 484 1 453 9.91e-35 135
Msa1109520 AT3G21780.1 24.803 508 309 18 9 484 2 468 2.79e-34 135
Msa1109520 AT1G05560.1 27.364 497 288 22 11 484 5 451 4.80e-34 134
Msa1109520 AT1G22370.1 31.441 229 148 4 191 414 25 249 6.95e-34 130
Msa1109520 AT1G05560.2 27.364 497 288 22 11 484 55 501 1.15e-33 134
Msa1109520 AT3G21750.1 29.129 333 181 9 172 484 171 468 2.32e-33 132
Msa1109520 AT3G46720.1 26.369 493 287 17 11 486 9 442 5.62e-33 130
Msa1109520 AT2G15490.2 32.105 190 119 3 6 186 2 190 7.33e-33 126
Msa1109520 AT2G15490.2 32.061 131 73 4 363 488 151 270 1.81e-11 65.1
Msa1109520 AT2G29750.1 29.345 351 205 13 150 484 150 473 9.92e-33 130
Msa1109520 AT2G16890.4 30.909 330 170 11 11 312 9 308 1.19e-31 124
Msa1109520 AT2G16890.1 30.909 330 170 11 11 312 9 308 1.19e-31 124
Msa1109520 AT5G65550.1 27.465 426 236 15 9 402 7 391 1.52e-31 127
Msa1109520 AT2G18560.1 30.698 215 128 4 275 479 168 371 1.89e-31 125
Msa1109520 AT5G49690.1 25.549 501 301 17 10 492 9 455 1.55e-30 124
Msa1109520 AT5G38040.1 25.000 476 299 14 21 484 20 449 2.59e-30 123
Msa1109520 AT2G29710.1 31.818 242 146 7 243 484 240 462 3.03e-30 123
Msa1109520 AT1G07240.1 31.365 271 160 8 210 473 213 464 7.52e-30 122
Msa1109520 AT5G17050.1 34.762 210 116 5 275 484 268 456 2.98e-28 117
Msa1109520 AT5G17030.1 33.175 211 118 5 275 484 267 455 4.55e-27 114
Msa1109520 AT5G17040.2 30.000 270 155 8 218 484 99 337 7.13e-27 111
Msa1109520 AT5G17040.1 30.370 270 154 8 218 484 201 439 1.79e-26 112
Msa1109520 AT3G22250.1 24.390 492 272 17 12 463 9 440 1.01e-25 110
Msa1109520 AT4G27570.1 25.172 437 271 14 9 429 5 401 4.70e-25 108
Msa1109520 AT1G30530.1 26.400 375 226 11 121 484 115 450 1.37e-24 106
Msa1109520 AT2G22590.1 24.455 413 269 11 8 402 12 399 7.18e-24 104
Msa1109520 AT4G27560.1 25.277 451 279 16 9 440 5 416 1.01e-23 104
Msa1109520 AT3G29630.2 24.691 486 297 15 8 491 3 421 4.10e-23 102
Msa1109520 AT3G29630.1 24.089 494 316 14 8 491 3 447 7.55e-23 101
Msa1109520 AT5G54010.1 24.598 435 282 13 8 431 3 402 2.52e-22 100
Msa1109520 AT1G50580.1 25.761 427 245 15 8 412 3 379 5.83e-22 99.0
Msa1109520 AT1G64910.1 24.299 428 280 13 10 430 5 395 7.16e-22 98.6
Msa1109520 AT5G37950.2 40.708 113 65 2 275 387 227 337 1.21e-19 90.5
Msa1109520 AT5G37950.1 40.708 113 65 2 275 387 233 343 1.24e-19 90.9
Msa1109520 AT5G53990.1 24.183 459 287 16 10 446 5 424 1.31e-19 91.7
Msa1109520 AT5G54060.1 21.357 501 323 17 8 481 10 466 2.55e-19 90.9
Msa1109520 AT1G64920.1 23.265 490 318 18 8 487 3 444 2.78e-18 87.8
Msa1109520 AT4G09500.1 23.400 453 275 15 9 446 4 399 7.97e-17 83.2
Msa1109520 AT4G09500.2 23.348 454 299 14 9 446 4 424 6.69e-16 80.5
Msa1109520 AT2G22930.1 22.222 423 294 11 10 429 5 395 6.87e-16 80.5

Find 87 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCATTTCTTTGCTCTCT+TGG 0.225918 7_3:-53178520 None:intergenic
CTCCTCTGCAGCTTCCTAAT+TGG 0.244485 7_3:+53177742 Msa1109520:CDS
GGCACCACAACTCTTTATAT+TGG 0.259371 7_3:+53178238 Msa1109520:CDS
TATCTGGGTTGTAAGGAAAA+AGG 0.268127 7_3:+53178130 Msa1109520:CDS
AAGAGGCAGACTGGTTAAAT+TGG 0.271096 7_3:+53177991 Msa1109520:CDS
GTCACAATCGCTCCTGTTGC+AGG 0.279867 7_3:-53178266 None:intergenic
AAGCCGTAAAAGTGAATTCT+TGG 0.280742 7_3:-53177603 None:intergenic
CTCTTTGTCCTTATCCAATT+AGG 0.291715 7_3:-53177756 None:intergenic
ATGTTACATGAAGTTGGTTA+TGG 0.297776 7_3:-53177200 None:intergenic
TAACAAGGATAATGAGAAAA+AGG 0.303871 7_3:+53177938 Msa1109520:CDS
AGGGCTATATCATATGGAAT+TGG 0.320112 7_3:+53178216 Msa1109520:CDS
GCACATGGGCTTGAAAATTC+AGG 0.326438 7_3:+53178098 Msa1109520:CDS
TGAATTGAAGTCACTGTCTA+TGG 0.334767 7_3:-53177346 None:intergenic
AAGGATGAAAGAAAGCAAAA+AGG 0.338970 7_3:+53178196 Msa1109520:CDS
CTCCTCTATGCGTCCCCTAT+TGG 0.346181 7_3:-53177961 None:intergenic
TCCTTTCCTCAAAATCTTGA+AGG 0.361084 7_3:-53178178 None:intergenic
TCTGTACTGTATGTAAGTTT+TGG 0.369745 7_3:+53178035 Msa1109520:CDS
TGTTACATGAAGTTGGTTAT+GGG 0.375904 7_3:-53177199 None:intergenic
GTGAAGATGTAGTGGTGAAA+AGG 0.396895 7_3:+53178456 Msa1109520:CDS
TTGTTATCCCATGATGAAAC+TGG 0.420379 7_3:-53177921 None:intergenic
GCAGCTTGTTCGGCGGTCCA+AGG 0.428312 7_3:-53177567 None:intergenic
ATATTGGATCACCCTGCAAC+AGG 0.428727 7_3:+53178254 Msa1109520:CDS
TGAAGATGTAGTGGTGAAAA+GGG 0.442557 7_3:+53178457 Msa1109520:CDS
AATCTTGCAGTGTCAATCAT+AGG 0.443213 7_3:-53177255 None:intergenic
GGGCTATATCATATGGAATT+GGG 0.452750 7_3:+53178217 Msa1109520:CDS
GAGCAATAGAAAACAAGTTA+TGG 0.454124 7_3:+53178420 Msa1109520:CDS
ATAGACAGTGACTTCAATTC+AGG 0.455147 7_3:+53177348 Msa1109520:CDS
GGATTCATATGGCCAGGACT+TGG 0.458733 7_3:-53177234 None:intergenic
AACATTGGCCATGTAATCAT+TGG 0.467524 7_3:-53178335 None:intergenic
ATGATTACATGGCCAATGTT+TGG 0.469197 7_3:+53178338 Msa1109520:CDS
TGCAGCTTCCTAATTGGATA+AGG 0.471991 7_3:+53177748 Msa1109520:CDS
CTAGCATGGGGATCAAATCT+TGG 0.472530 7_3:+53177889 Msa1109520:CDS
GAATAAATGTTACATGAAGT+TGG 0.479142 7_3:-53177206 None:intergenic
CCACTATACAATCAGGTTGA+AGG 0.480702 7_3:-53177530 None:intergenic
CTGGTTTGCCAATGATTACA+TGG 0.485323 7_3:+53178327 Msa1109520:CDS
ACCTTCCTCTATAGTCGTCT+TGG 0.486118 7_3:-53178570 None:intergenic
CATAGAGGAGCTTGGAAAAG+AGG 0.489248 7_3:+53177974 Msa1109520:CDS
ATTAGCATGTGTAGCTATGA+TGG 0.492761 7_3:-53177304 None:intergenic
ATCATAGGATTCATATGGCC+AGG 0.495465 7_3:-53177240 None:intergenic
TGTCAATCATAGGATTCATA+TGG 0.497162 7_3:-53177245 None:intergenic
GGCCAATAGGGGACGCATAG+AGG 0.500735 7_3:+53177959 Msa1109520:CDS
GATCAAATCAGCTGCACAGT+TGG 0.506852 7_3:-53177637 None:intergenic
CAGTTCCCTTCAGCTCAAGT+TGG 0.509931 7_3:+53177396 Msa1109520:CDS
AAACTTGGTAACACTAGCAT+GGG 0.516760 7_3:+53177876 Msa1109520:CDS
GCTCAAGTTGGTCTCCCTGA+TGG 0.517552 7_3:+53177408 Msa1109520:CDS
ATATCTGCCACTATACAATC+AGG 0.517560 7_3:-53177537 None:intergenic
CCTTCAACCTGATTGTATAG+TGG 0.522287 7_3:+53177530 Msa1109520:CDS
AGGATGAGAGCAAAGAAACT+TGG 0.527542 7_3:+53178539 Msa1109520:CDS
ACTCTTGAAAGCATAAATGC+TGG 0.533717 7_3:+53178308 Msa1109520:CDS
GGGAGACCAACTTGAGCTGA+AGG 0.537026 7_3:-53177402 None:intergenic
GTGTAGGACCAGTTTCATCA+TGG 0.537250 7_3:+53177913 Msa1109520:CDS
AGCTTGGAAAAGAGGCAGAC+TGG 0.544212 7_3:+53177982 Msa1109520:CDS
TTTATTCCACATCCAAGTCC+TGG 0.545486 7_3:+53177222 Msa1109520:CDS
TGGCAGATATGATGCAGCCT+TGG 0.546187 7_3:+53177550 Msa1109520:CDS
TTGAAAATAGCGGTCCCAGT+TGG 0.552478 7_3:+53178398 Msa1109520:CDS
AGGGGACGCATAGAGGAGCT+TGG 0.552547 7_3:+53177966 Msa1109520:CDS
CAGCTTGTAGAAATTGCACA+TGG 0.554057 7_3:+53178083 Msa1109520:CDS
TAAAATTGATCACCAAACAT+TGG 0.555751 7_3:-53178350 None:intergenic
ATATGGCCAGGACTTGGATG+TGG 0.558704 7_3:-53177228 None:intergenic
CACTAGTAGTGAAGATGTAG+TGG 0.560380 7_3:+53178448 Msa1109520:CDS
GGGATCAAATCTTGGAGTGT+AGG 0.562776 7_3:+53177897 Msa1109520:CDS
GCAAAGCCTCAATCGAATCT+CGG 0.567576 7_3:-53177500 None:intergenic
AAAACTTGGTAACACTAGCA+TGG 0.567971 7_3:+53177875 Msa1109520:CDS
GCCGAACAAGCTGCAAAACT+AGG 0.572298 7_3:+53177576 Msa1109520:CDS
GGAGTCATCTCAATTGTATG+AGG 0.575171 7_3:-53177723 None:intergenic
GCAAGATTATTTGCTATGCA+TGG 0.591125 7_3:+53177270 Msa1109520:CDS
GCCAAGAGAGCAAAGAAATG+AGG 0.593451 7_3:+53178519 Msa1109520:CDS
TCAATTGTATGAGGAAAGCA+AGG 0.593831 7_3:-53177714 None:intergenic
TGCTGCCAAGACGACTATAG+AGG 0.595356 7_3:+53178565 Msa1109520:CDS
CTCGGAGCATGTATGTTCCA+AGG 0.595823 7_3:-53177482 None:intergenic
CGATTGTGACTCACTGTGGT+TGG 0.596624 7_3:+53178279 Msa1109520:CDS
AGTTTCATCATGGGATAACA+AGG 0.602562 7_3:+53177923 Msa1109520:CDS
TCACAATCGCTCCTGTTGCA+GGG 0.607145 7_3:-53178265 None:intergenic
TGTAGGACCAGTTTCATCAT+GGG 0.610009 7_3:+53177914 Msa1109520:CDS
CATGCTCCGAGATTCGATTG+AGG 0.616793 7_3:+53177494 Msa1109520:CDS
TTGAAGAAATCTAAAGCACT+CGG 0.618950 7_3:+53178641 Msa1109520:CDS
TCAGAAACTAAATTATCTTG+AGG 0.621230 7_3:-53177672 None:intergenic
GGAGACCAACTTGAGCTGAA+GGG 0.621494 7_3:-53177401 None:intergenic
GCCAAGACGACTATAGAGGA+AGG 0.640271 7_3:+53178569 Msa1109520:CDS
ATCCAATTAGGAAGCTGCAG+AGG 0.646580 7_3:-53177744 None:intergenic
TGATCCAATATAAAGAGTTG+TGG 0.647317 7_3:-53178242 None:intergenic
GCTTCAAAATAGTCAGTGTG+AGG 0.660374 7_3:-53177780 None:intergenic
AGCTTGTAGAAATTGCACAT+GGG 0.669891 7_3:+53178084 Msa1109520:CDS
AAGACGACTATAGAGGAAGG+TGG 0.671765 7_3:+53178572 Msa1109520:CDS
GAAAAGGGAAGAGATAGCGA+AGG 0.701723 7_3:+53178472 Msa1109520:CDS
AACTTGGTAACACTAGCATG+GGG 0.721407 7_3:+53177877 Msa1109520:CDS
GGAGCGATTGTGACTCACTG+TGG 0.787881 7_3:+53178275 Msa1109520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAATACAACAAAAAAT+CGG + chr7_3:53177459-53177478 Msa1109520:CDS 15.0%
!!! TTTGAAATACAACAAAAAAT+CGG + chr7_3:53177459-53177478 Msa1109520:CDS 15.0%
!!! GAATAAGTTGAGTTTTAATA+GGG - chr7_3:53177377-53177396 None:intergenic 20.0%
!!! TGAATAAGTTGAGTTTTAAT+AGG - chr7_3:53177378-53177397 None:intergenic 20.0%
!!! GAATAAGTTGAGTTTTAATA+GGG - chr7_3:53177377-53177396 None:intergenic 20.0%
!!! TGAATAAGTTGAGTTTTAAT+AGG - chr7_3:53177378-53177397 None:intergenic 20.0%
! GAATAAATGTTACATGAAGT+TGG - chr7_3:53177209-53177228 None:intergenic 25.0%
!!! ATTCCAAGAATTCACTTTTA+CGG + chr7_3:53177600-53177619 Msa1109520:CDS 25.0%
! TCAGAAACTAAATTATCTTG+AGG - chr7_3:53177675-53177694 None:intergenic 25.0%
!! ATACAATAGTTTTCATGAAC+TGG + chr7_3:53177839-53177858 Msa1109520:CDS 25.0%
! GAAAGTGATTATCAAAAACT+TGG + chr7_3:53177861-53177880 Msa1109520:CDS 25.0%
! TAACAAGGATAATGAGAAAA+AGG + chr7_3:53177938-53177957 Msa1109520:CDS 25.0%
!! ATTCAGGTCATAATTTTATC+TGG + chr7_3:53178114-53178133 Msa1109520:CDS 25.0%
!! TTCAGGTCATAATTTTATCT+GGG + chr7_3:53178115-53178134 Msa1109520:CDS 25.0%
!! ATAATTTTATCTGGGTTGTA+AGG + chr7_3:53178123-53178142 Msa1109520:CDS 25.0%
! TAAAATTGATCACCAAACAT+TGG - chr7_3:53178353-53178372 None:intergenic 25.0%
! GAATAAATGTTACATGAAGT+TGG - chr7_3:53177209-53177228 None:intergenic 25.0%
!!! ATTCCAAGAATTCACTTTTA+CGG + chr7_3:53177600-53177619 Msa1109520:CDS 25.0%
! TCAGAAACTAAATTATCTTG+AGG - chr7_3:53177675-53177694 None:intergenic 25.0%
!! ATACAATAGTTTTCATGAAC+TGG + chr7_3:53177839-53177858 Msa1109520:CDS 25.0%
! GAAAGTGATTATCAAAAACT+TGG + chr7_3:53177861-53177880 Msa1109520:CDS 25.0%
! TAACAAGGATAATGAGAAAA+AGG + chr7_3:53177938-53177957 Msa1109520:CDS 25.0%
!! ATTCAGGTCATAATTTTATC+TGG + chr7_3:53178114-53178133 Msa1109520:CDS 25.0%
!! TTCAGGTCATAATTTTATCT+GGG + chr7_3:53178115-53178134 Msa1109520:CDS 25.0%
!! ATAATTTTATCTGGGTTGTA+AGG + chr7_3:53178123-53178142 Msa1109520:CDS 25.0%
! TAAAATTGATCACCAAACAT+TGG - chr7_3:53178353-53178372 None:intergenic 25.0%
! TGTTACATGAAGTTGGTTAT+GGG - chr7_3:53177202-53177221 None:intergenic 30.0%
! ATGTTACATGAAGTTGGTTA+TGG - chr7_3:53177203-53177222 None:intergenic 30.0%
TGTCAATCATAGGATTCATA+TGG - chr7_3:53177248-53177267 None:intergenic 30.0%
GAATCACAGAGAAAAAGTTA+TGG + chr7_3:53177810-53177829 Msa1109520:CDS 30.0%
ATAATGAGAAAAAGGCCAAT+AGG + chr7_3:53177946-53177965 Msa1109520:CDS 30.0%
TAATGAGAAAAAGGCCAATA+GGG + chr7_3:53177947-53177966 Msa1109520:CDS 30.0%
! TCTGTACTGTATGTAAGTTT+TGG + chr7_3:53178035-53178054 Msa1109520:CDS 30.0%
AAGGATGAAAGAAAGCAAAA+AGG + chr7_3:53178196-53178215 Msa1109520:CDS 30.0%
AGGATGAAAGAAAGCAAAAA+GGG + chr7_3:53178197-53178216 Msa1109520:CDS 30.0%
TGATCCAATATAAAGAGTTG+TGG - chr7_3:53178245-53178264 None:intergenic 30.0%
!!! CGTTGATGTTTTGAAAATAG+CGG + chr7_3:53178388-53178407 Msa1109520:CDS 30.0%
GAGCAATAGAAAACAAGTTA+TGG + chr7_3:53178420-53178439 Msa1109520:CDS 30.0%
!! AAGGCTGTAGAGATTTTAAT+GGG + chr7_3:53178491-53178510 Msa1109520:CDS 30.0%
! TTGAAGAAATCTAAAGCACT+CGG + chr7_3:53178641-53178660 Msa1109520:CDS 30.0%
! TGTTACATGAAGTTGGTTAT+GGG - chr7_3:53177202-53177221 None:intergenic 30.0%
! ATGTTACATGAAGTTGGTTA+TGG - chr7_3:53177203-53177222 None:intergenic 30.0%
TGTCAATCATAGGATTCATA+TGG - chr7_3:53177248-53177267 None:intergenic 30.0%
GAATCACAGAGAAAAAGTTA+TGG + chr7_3:53177810-53177829 Msa1109520:CDS 30.0%
ATAATGAGAAAAAGGCCAAT+AGG + chr7_3:53177946-53177965 Msa1109520:CDS 30.0%
TAATGAGAAAAAGGCCAATA+GGG + chr7_3:53177947-53177966 Msa1109520:CDS 30.0%
! TCTGTACTGTATGTAAGTTT+TGG + chr7_3:53178035-53178054 Msa1109520:CDS 30.0%
AAGGATGAAAGAAAGCAAAA+AGG + chr7_3:53178196-53178215 Msa1109520:CDS 30.0%
AGGATGAAAGAAAGCAAAAA+GGG + chr7_3:53178197-53178216 Msa1109520:CDS 30.0%
TGATCCAATATAAAGAGTTG+TGG - chr7_3:53178245-53178264 None:intergenic 30.0%
!!! CGTTGATGTTTTGAAAATAG+CGG + chr7_3:53178388-53178407 Msa1109520:CDS 30.0%
GAGCAATAGAAAACAAGTTA+TGG + chr7_3:53178420-53178439 Msa1109520:CDS 30.0%
!! AAGGCTGTAGAGATTTTAAT+GGG + chr7_3:53178491-53178510 Msa1109520:CDS 30.0%
! TTGAAGAAATCTAAAGCACT+CGG + chr7_3:53178641-53178660 Msa1109520:CDS 30.0%
AATCTTGCAGTGTCAATCAT+AGG - chr7_3:53177258-53177277 None:intergenic 35.0%
!! GCAAGATTATTTGCTATGCA+TGG + chr7_3:53177270-53177289 Msa1109520:CDS 35.0%
ATTAGCATGTGTAGCTATGA+TGG - chr7_3:53177307-53177326 None:intergenic 35.0%
!!! TATGGCTTTTTGGAATGTTG+AGG - chr7_3:53177331-53177350 None:intergenic 35.0%
TGAATTGAAGTCACTGTCTA+TGG - chr7_3:53177349-53177368 None:intergenic 35.0%
ATAGACAGTGACTTCAATTC+AGG + chr7_3:53177348-53177367 Msa1109520:CDS 35.0%
! TGAAGTTTTCAACACCATCA+GGG - chr7_3:53177425-53177444 None:intergenic 35.0%
! TTGAAGTTTTCAACACCATC+AGG - chr7_3:53177426-53177445 None:intergenic 35.0%
ATACAACAAAAAATCGGCCT+TGG + chr7_3:53177465-53177484 Msa1109520:CDS 35.0%
ATATCTGCCACTATACAATC+AGG - chr7_3:53177540-53177559 None:intergenic 35.0%
AAGCCGTAAAAGTGAATTCT+TGG - chr7_3:53177606-53177625 None:intergenic 35.0%
TCAATTGTATGAGGAAAGCA+AGG - chr7_3:53177717-53177736 None:intergenic 35.0%
CTCTTTGTCCTTATCCAATT+AGG - chr7_3:53177759-53177778 None:intergenic 35.0%
! AAAACTTGGTAACACTAGCA+TGG + chr7_3:53177875-53177894 Msa1109520:CDS 35.0%
! AAACTTGGTAACACTAGCAT+GGG + chr7_3:53177876-53177895 Msa1109520:CDS 35.0%
TTGTTATCCCATGATGAAAC+TGG - chr7_3:53177924-53177943 None:intergenic 35.0%
AGTTTCATCATGGGATAACA+AGG + chr7_3:53177923-53177942 Msa1109520:CDS 35.0%
AATGAGAAAAAGGCCAATAG+GGG + chr7_3:53177948-53177967 Msa1109520:CDS 35.0%
!!! TAAGTTTTGGAAGTCTAGCT+AGG + chr7_3:53178048-53178067 Msa1109520:CDS 35.0%
AGCTTGTAGAAATTGCACAT+GGG + chr7_3:53178084-53178103 Msa1109520:CDS 35.0%
TATCTGGGTTGTAAGGAAAA+AGG + chr7_3:53178130-53178149 Msa1109520:CDS 35.0%
! CACTTTCCTTCAAGATTTTG+AGG + chr7_3:53178172-53178191 Msa1109520:CDS 35.0%
!! TCCTTCAAGATTTTGAGGAA+AGG + chr7_3:53178177-53178196 Msa1109520:CDS 35.0%
TCCTTTCCTCAAAATCTTGA+AGG - chr7_3:53178181-53178200 None:intergenic 35.0%
GCAAAAAGGGCTATATCATA+TGG + chr7_3:53178210-53178229 Msa1109520:CDS 35.0%
AGGGCTATATCATATGGAAT+TGG + chr7_3:53178216-53178235 Msa1109520:CDS 35.0%
GGGCTATATCATATGGAATT+GGG + chr7_3:53178217-53178236 Msa1109520:CDS 35.0%
! ACTCTTGAAAGCATAAATGC+TGG + chr7_3:53178308-53178327 Msa1109520:CDS 35.0%
AACATTGGCCATGTAATCAT+TGG - chr7_3:53178338-53178357 None:intergenic 35.0%
ATGATTACATGGCCAATGTT+TGG + chr7_3:53178338-53178357 Msa1109520:CDS 35.0%
! TGTTTTCTATTGCTCCAACT+GGG - chr7_3:53178415-53178434 None:intergenic 35.0%
! TTGTTTTCTATTGCTCCAAC+TGG - chr7_3:53178416-53178435 None:intergenic 35.0%
TGAAGATGTAGTGGTGAAAA+GGG + chr7_3:53178457-53178476 Msa1109520:CDS 35.0%
! GAAGGCTGTAGAGATTTTAA+TGG + chr7_3:53178490-53178509 Msa1109520:CDS 35.0%
!! GTAGAGATTTTAATGGGAAG+TGG + chr7_3:53178497-53178516 Msa1109520:CDS 35.0%
AATCTTGCAGTGTCAATCAT+AGG - chr7_3:53177258-53177277 None:intergenic 35.0%
!! GCAAGATTATTTGCTATGCA+TGG + chr7_3:53177270-53177289 Msa1109520:CDS 35.0%
ATTAGCATGTGTAGCTATGA+TGG - chr7_3:53177307-53177326 None:intergenic 35.0%
!!! TATGGCTTTTTGGAATGTTG+AGG - chr7_3:53177331-53177350 None:intergenic 35.0%
TGAATTGAAGTCACTGTCTA+TGG - chr7_3:53177349-53177368 None:intergenic 35.0%
ATAGACAGTGACTTCAATTC+AGG + chr7_3:53177348-53177367 Msa1109520:CDS 35.0%
! TGAAGTTTTCAACACCATCA+GGG - chr7_3:53177425-53177444 None:intergenic 35.0%
! TTGAAGTTTTCAACACCATC+AGG - chr7_3:53177426-53177445 None:intergenic 35.0%
ATACAACAAAAAATCGGCCT+TGG + chr7_3:53177465-53177484 Msa1109520:CDS 35.0%
ATATCTGCCACTATACAATC+AGG - chr7_3:53177540-53177559 None:intergenic 35.0%
AAGCCGTAAAAGTGAATTCT+TGG - chr7_3:53177606-53177625 None:intergenic 35.0%
TCAATTGTATGAGGAAAGCA+AGG - chr7_3:53177717-53177736 None:intergenic 35.0%
CTCTTTGTCCTTATCCAATT+AGG - chr7_3:53177759-53177778 None:intergenic 35.0%
! AAAACTTGGTAACACTAGCA+TGG + chr7_3:53177875-53177894 Msa1109520:CDS 35.0%
! AAACTTGGTAACACTAGCAT+GGG + chr7_3:53177876-53177895 Msa1109520:CDS 35.0%
TTGTTATCCCATGATGAAAC+TGG - chr7_3:53177924-53177943 None:intergenic 35.0%
AGTTTCATCATGGGATAACA+AGG + chr7_3:53177923-53177942 Msa1109520:CDS 35.0%
AATGAGAAAAAGGCCAATAG+GGG + chr7_3:53177948-53177967 Msa1109520:CDS 35.0%
!!! TAAGTTTTGGAAGTCTAGCT+AGG + chr7_3:53178048-53178067 Msa1109520:CDS 35.0%
AGCTTGTAGAAATTGCACAT+GGG + chr7_3:53178084-53178103 Msa1109520:CDS 35.0%
TATCTGGGTTGTAAGGAAAA+AGG + chr7_3:53178130-53178149 Msa1109520:CDS 35.0%
! CACTTTCCTTCAAGATTTTG+AGG + chr7_3:53178172-53178191 Msa1109520:CDS 35.0%
!! TCCTTCAAGATTTTGAGGAA+AGG + chr7_3:53178177-53178196 Msa1109520:CDS 35.0%
TCCTTTCCTCAAAATCTTGA+AGG - chr7_3:53178181-53178200 None:intergenic 35.0%
GCAAAAAGGGCTATATCATA+TGG + chr7_3:53178210-53178229 Msa1109520:CDS 35.0%
AGGGCTATATCATATGGAAT+TGG + chr7_3:53178216-53178235 Msa1109520:CDS 35.0%
GGGCTATATCATATGGAATT+GGG + chr7_3:53178217-53178236 Msa1109520:CDS 35.0%
! ACTCTTGAAAGCATAAATGC+TGG + chr7_3:53178308-53178327 Msa1109520:CDS 35.0%
AACATTGGCCATGTAATCAT+TGG - chr7_3:53178338-53178357 None:intergenic 35.0%
ATGATTACATGGCCAATGTT+TGG + chr7_3:53178338-53178357 Msa1109520:CDS 35.0%
! TGTTTTCTATTGCTCCAACT+GGG - chr7_3:53178415-53178434 None:intergenic 35.0%
! TTGTTTTCTATTGCTCCAAC+TGG - chr7_3:53178416-53178435 None:intergenic 35.0%
TGAAGATGTAGTGGTGAAAA+GGG + chr7_3:53178457-53178476 Msa1109520:CDS 35.0%
! GAAGGCTGTAGAGATTTTAA+TGG + chr7_3:53178490-53178509 Msa1109520:CDS 35.0%
!! GTAGAGATTTTAATGGGAAG+TGG + chr7_3:53178497-53178516 Msa1109520:CDS 35.0%
TTTATTCCACATCCAAGTCC+TGG + chr7_3:53177222-53177241 Msa1109520:CDS 40.0%
ATCATAGGATTCATATGGCC+AGG - chr7_3:53177243-53177262 None:intergenic 40.0%
! AGTCACTGTCTATGGCTTTT+TGG - chr7_3:53177341-53177360 None:intergenic 40.0%
!! CCACTATACAATCAGGTTGA+AGG - chr7_3:53177533-53177552 None:intergenic 40.0%
CCTTCAACCTGATTGTATAG+TGG + chr7_3:53177530-53177549 Msa1109520:CDS 40.0%
!!! ACCTAGTTTTGCAGCTTGTT+CGG - chr7_3:53177580-53177599 None:intergenic 40.0%
GGAGTCATCTCAATTGTATG+AGG - chr7_3:53177726-53177745 None:intergenic 40.0%
TGCAGCTTCCTAATTGGATA+AGG + chr7_3:53177748-53177767 Msa1109520:CDS 40.0%
GCTTCAAAATAGTCAGTGTG+AGG - chr7_3:53177783-53177802 None:intergenic 40.0%
! AACTTGGTAACACTAGCATG+GGG + chr7_3:53177877-53177896 Msa1109520:CDS 40.0%
TGTAGGACCAGTTTCATCAT+GGG + chr7_3:53177914-53177933 Msa1109520:CDS 40.0%
! AAGAGGCAGACTGGTTAAAT+TGG + chr7_3:53177991-53178010 Msa1109520:CDS 40.0%
CAGCTTGTAGAAATTGCACA+TGG + chr7_3:53178083-53178102 Msa1109520:CDS 40.0%
GGTTGTAAGGAAAAAGGAGA+GGG + chr7_3:53178136-53178155 Msa1109520:CDS 40.0%
GGCACCACAACTCTTTATAT+TGG + chr7_3:53178238-53178257 Msa1109520:CDS 40.0%
! CTGGTTTGCCAATGATTACA+TGG + chr7_3:53178327-53178346 Msa1109520:CDS 40.0%
CACTAGTAGTGAAGATGTAG+TGG + chr7_3:53178448-53178467 Msa1109520:CDS 40.0%
GTGAAGATGTAGTGGTGAAA+AGG + chr7_3:53178456-53178475 Msa1109520:CDS 40.0%
TCCTCATTTCTTTGCTCTCT+TGG - chr7_3:53178523-53178542 None:intergenic 40.0%
AGGATGAGAGCAAAGAAACT+TGG + chr7_3:53178539-53178558 Msa1109520:CDS 40.0%
TTTATTCCACATCCAAGTCC+TGG + chr7_3:53177222-53177241 Msa1109520:CDS 40.0%
ATCATAGGATTCATATGGCC+AGG - chr7_3:53177243-53177262 None:intergenic 40.0%
! AGTCACTGTCTATGGCTTTT+TGG - chr7_3:53177341-53177360 None:intergenic 40.0%
!! CCACTATACAATCAGGTTGA+AGG - chr7_3:53177533-53177552 None:intergenic 40.0%
CCTTCAACCTGATTGTATAG+TGG + chr7_3:53177530-53177549 Msa1109520:CDS 40.0%
!!! ACCTAGTTTTGCAGCTTGTT+CGG - chr7_3:53177580-53177599 None:intergenic 40.0%
GGAGTCATCTCAATTGTATG+AGG - chr7_3:53177726-53177745 None:intergenic 40.0%
TGCAGCTTCCTAATTGGATA+AGG + chr7_3:53177748-53177767 Msa1109520:CDS 40.0%
GCTTCAAAATAGTCAGTGTG+AGG - chr7_3:53177783-53177802 None:intergenic 40.0%
! AACTTGGTAACACTAGCATG+GGG + chr7_3:53177877-53177896 Msa1109520:CDS 40.0%
TGTAGGACCAGTTTCATCAT+GGG + chr7_3:53177914-53177933 Msa1109520:CDS 40.0%
! AAGAGGCAGACTGGTTAAAT+TGG + chr7_3:53177991-53178010 Msa1109520:CDS 40.0%
CAGCTTGTAGAAATTGCACA+TGG + chr7_3:53178083-53178102 Msa1109520:CDS 40.0%
GGTTGTAAGGAAAAAGGAGA+GGG + chr7_3:53178136-53178155 Msa1109520:CDS 40.0%
GGCACCACAACTCTTTATAT+TGG + chr7_3:53178238-53178257 Msa1109520:CDS 40.0%
! CTGGTTTGCCAATGATTACA+TGG + chr7_3:53178327-53178346 Msa1109520:CDS 40.0%
CACTAGTAGTGAAGATGTAG+TGG + chr7_3:53178448-53178467 Msa1109520:CDS 40.0%
GTGAAGATGTAGTGGTGAAA+AGG + chr7_3:53178456-53178475 Msa1109520:CDS 40.0%
TCCTCATTTCTTTGCTCTCT+TGG - chr7_3:53178523-53178542 None:intergenic 40.0%
AGGATGAGAGCAAAGAAACT+TGG + chr7_3:53178539-53178558 Msa1109520:CDS 40.0%
GCAAAGCCTCAATCGAATCT+CGG - chr7_3:53177503-53177522 None:intergenic 45.0%
!! TAGTTTTGCAGCTTGTTCGG+CGG - chr7_3:53177577-53177596 None:intergenic 45.0%
GATCAAATCAGCTGCACAGT+TGG - chr7_3:53177640-53177659 None:intergenic 45.0%
ATCCAATTAGGAAGCTGCAG+AGG - chr7_3:53177747-53177766 None:intergenic 45.0%
CTAGCATGGGGATCAAATCT+TGG + chr7_3:53177889-53177908 Msa1109520:CDS 45.0%
GGGATCAAATCTTGGAGTGT+AGG + chr7_3:53177897-53177916 Msa1109520:CDS 45.0%
GTGTAGGACCAGTTTCATCA+TGG + chr7_3:53177913-53177932 Msa1109520:CDS 45.0%
CATAGAGGAGCTTGGAAAAG+AGG + chr7_3:53177974-53177993 Msa1109520:CDS 45.0%
GCACATGGGCTTGAAAATTC+AGG + chr7_3:53178098-53178117 Msa1109520:CDS 45.0%
GGGTTGTAAGGAAAAAGGAG+AGG + chr7_3:53178135-53178154 Msa1109520:CDS 45.0%
ATATTGGATCACCCTGCAAC+AGG + chr7_3:53178254-53178273 Msa1109520:CDS 45.0%
TTGAAAATAGCGGTCCCAGT+TGG + chr7_3:53178398-53178417 Msa1109520:CDS 45.0%
GAAAAGGGAAGAGATAGCGA+AGG + chr7_3:53178472-53178491 Msa1109520:CDS 45.0%
GCCAAGAGAGCAAAGAAATG+AGG + chr7_3:53178519-53178538 Msa1109520:CDS 45.0%
ACCTTCCTCTATAGTCGTCT+TGG - chr7_3:53178573-53178592 None:intergenic 45.0%
AAGACGACTATAGAGGAAGG+TGG + chr7_3:53178572-53178591 Msa1109520:CDS 45.0%
GCAAAGCCTCAATCGAATCT+CGG - chr7_3:53177503-53177522 None:intergenic 45.0%
!! TAGTTTTGCAGCTTGTTCGG+CGG - chr7_3:53177577-53177596 None:intergenic 45.0%
GATCAAATCAGCTGCACAGT+TGG - chr7_3:53177640-53177659 None:intergenic 45.0%
ATCCAATTAGGAAGCTGCAG+AGG - chr7_3:53177747-53177766 None:intergenic 45.0%
CTAGCATGGGGATCAAATCT+TGG + chr7_3:53177889-53177908 Msa1109520:CDS 45.0%
GGGATCAAATCTTGGAGTGT+AGG + chr7_3:53177897-53177916 Msa1109520:CDS 45.0%
GTGTAGGACCAGTTTCATCA+TGG + chr7_3:53177913-53177932 Msa1109520:CDS 45.0%
CATAGAGGAGCTTGGAAAAG+AGG + chr7_3:53177974-53177993 Msa1109520:CDS 45.0%
GCACATGGGCTTGAAAATTC+AGG + chr7_3:53178098-53178117 Msa1109520:CDS 45.0%
GGGTTGTAAGGAAAAAGGAG+AGG + chr7_3:53178135-53178154 Msa1109520:CDS 45.0%
ATATTGGATCACCCTGCAAC+AGG + chr7_3:53178254-53178273 Msa1109520:CDS 45.0%
TTGAAAATAGCGGTCCCAGT+TGG + chr7_3:53178398-53178417 Msa1109520:CDS 45.0%
GAAAAGGGAAGAGATAGCGA+AGG + chr7_3:53178472-53178491 Msa1109520:CDS 45.0%
GCCAAGAGAGCAAAGAAATG+AGG + chr7_3:53178519-53178538 Msa1109520:CDS 45.0%
ACCTTCCTCTATAGTCGTCT+TGG - chr7_3:53178573-53178592 None:intergenic 45.0%
AAGACGACTATAGAGGAAGG+TGG + chr7_3:53178572-53178591 Msa1109520:CDS 45.0%
ATATGGCCAGGACTTGGATG+TGG - chr7_3:53177231-53177250 None:intergenic 50.0%
GGATTCATATGGCCAGGACT+TGG - chr7_3:53177237-53177256 None:intergenic 50.0%
CAGTTCCCTTCAGCTCAAGT+TGG + chr7_3:53177396-53177415 Msa1109520:CDS 50.0%
GGAGACCAACTTGAGCTGAA+GGG - chr7_3:53177404-53177423 None:intergenic 50.0%
CTCGGAGCATGTATGTTCCA+AGG - chr7_3:53177485-53177504 None:intergenic 50.0%
CATGCTCCGAGATTCGATTG+AGG + chr7_3:53177494-53177513 Msa1109520:CDS 50.0%
TGGCAGATATGATGCAGCCT+TGG + chr7_3:53177550-53177569 Msa1109520:CDS 50.0%
GCCGAACAAGCTGCAAAACT+AGG + chr7_3:53177576-53177595 Msa1109520:CDS 50.0%
CTCCTCTGCAGCTTCCTAAT+TGG + chr7_3:53177742-53177761 Msa1109520:CDS 50.0%
AGCTTGGAAAAGAGGCAGAC+TGG + chr7_3:53177982-53178001 Msa1109520:CDS 50.0%
TCACAATCGCTCCTGTTGCA+GGG - chr7_3:53178268-53178287 None:intergenic 50.0%
CGATTGTGACTCACTGTGGT+TGG + chr7_3:53178279-53178298 Msa1109520:CDS 50.0%
TGCTGCCAAGACGACTATAG+AGG + chr7_3:53178565-53178584 Msa1109520:CDS 50.0%
GCCAAGACGACTATAGAGGA+AGG + chr7_3:53178569-53178588 Msa1109520:CDS 50.0%
ATATGGCCAGGACTTGGATG+TGG - chr7_3:53177231-53177250 None:intergenic 50.0%
GGATTCATATGGCCAGGACT+TGG - chr7_3:53177237-53177256 None:intergenic 50.0%
CAGTTCCCTTCAGCTCAAGT+TGG + chr7_3:53177396-53177415 Msa1109520:CDS 50.0%
GGAGACCAACTTGAGCTGAA+GGG - chr7_3:53177404-53177423 None:intergenic 50.0%
CTCGGAGCATGTATGTTCCA+AGG - chr7_3:53177485-53177504 None:intergenic 50.0%
CATGCTCCGAGATTCGATTG+AGG + chr7_3:53177494-53177513 Msa1109520:CDS 50.0%
TGGCAGATATGATGCAGCCT+TGG + chr7_3:53177550-53177569 Msa1109520:CDS 50.0%
GCCGAACAAGCTGCAAAACT+AGG + chr7_3:53177576-53177595 Msa1109520:CDS 50.0%
CTCCTCTGCAGCTTCCTAAT+TGG + chr7_3:53177742-53177761 Msa1109520:CDS 50.0%
AGCTTGGAAAAGAGGCAGAC+TGG + chr7_3:53177982-53178001 Msa1109520:CDS 50.0%
TCACAATCGCTCCTGTTGCA+GGG - chr7_3:53178268-53178287 None:intergenic 50.0%
CGATTGTGACTCACTGTGGT+TGG + chr7_3:53178279-53178298 Msa1109520:CDS 50.0%
TGCTGCCAAGACGACTATAG+AGG + chr7_3:53178565-53178584 Msa1109520:CDS 50.0%
GCCAAGACGACTATAGAGGA+AGG + chr7_3:53178569-53178588 Msa1109520:CDS 50.0%
GGGAGACCAACTTGAGCTGA+AGG - chr7_3:53177405-53177424 None:intergenic 55.0%
!! GCTCAAGTTGGTCTCCCTGA+TGG + chr7_3:53177408-53177427 Msa1109520:CDS 55.0%
CTCCTCTATGCGTCCCCTAT+TGG - chr7_3:53177964-53177983 None:intergenic 55.0%
GTCACAATCGCTCCTGTTGC+AGG - chr7_3:53178269-53178288 None:intergenic 55.0%
GGAGCGATTGTGACTCACTG+TGG + chr7_3:53178275-53178294 Msa1109520:CDS 55.0%
GGGAGACCAACTTGAGCTGA+AGG - chr7_3:53177405-53177424 None:intergenic 55.0%
!! GCTCAAGTTGGTCTCCCTGA+TGG + chr7_3:53177408-53177427 Msa1109520:CDS 55.0%
CTCCTCTATGCGTCCCCTAT+TGG - chr7_3:53177964-53177983 None:intergenic 55.0%
GTCACAATCGCTCCTGTTGC+AGG - chr7_3:53178269-53178288 None:intergenic 55.0%
GGAGCGATTGTGACTCACTG+TGG + chr7_3:53178275-53178294 Msa1109520:CDS 55.0%
GGCCAATAGGGGACGCATAG+AGG + chr7_3:53177959-53177978 Msa1109520:CDS 60.0%
AGGGGACGCATAGAGGAGCT+TGG + chr7_3:53177966-53177985 Msa1109520:CDS 60.0%
GGCCAATAGGGGACGCATAG+AGG + chr7_3:53177959-53177978 Msa1109520:CDS 60.0%
AGGGGACGCATAGAGGAGCT+TGG + chr7_3:53177966-53177985 Msa1109520:CDS 60.0%
! GCAGCTTGTTCGGCGGTCCA+AGG - chr7_3:53177570-53177589 None:intergenic 65.0%
! GCAGCTTGTTCGGCGGTCCA+AGG - chr7_3:53177570-53177589 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 53177183 53178679 53177183 ID=Msa1109520;Name=Msa1109520
chr7_3 mRNA 53177183 53178679 53177183 ID=Msa1109520-mRNA-1;Parent=Msa1109520;Name=Msa1109520-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|498
chr7_3 exon 53177183 53178679 53177183 ID=Msa1109520-mRNA-1:exon:11283;Parent=Msa1109520-mRNA-1
chr7_3 CDS 53177183 53178679 53177183 ID=Msa1109520-mRNA-1:cds;Parent=Msa1109520-mRNA-1
Gene Sequence

>Msa1109520

ATGGAATCTCAACAATCCCATAACCAACTTCATGTAACATTTATTCCACATCCAAGTCCTGGCCATATGAATCCTATGATTGACACTGCAAGATTATTTGCTATGCATGGTGTTAATGTTACCATCATAGCTACACATGCTAATGCCTCAACATTCCAAAAAGCCATAGACAGTGACTTCAATTCAGGATACCCTATTAAAACTCAACTTATTCAGTTCCCTTCAGCTCAAGTTGGTCTCCCTGATGGTGTTGAAAACTTCAAAGATGCAACTTCATTTGAAATACAACAAAAAATCGGCCTTGGAACATACATGCTCCGAGATTCGATTGAGGCTTTGCTTCAAGACCTTCAACCTGATTGTATAGTGGCAGATATGATGCAGCCTTGGACCGCCGAACAAGCTGCAAAACTAGGTATTCCAAGAATTCACTTTTACGGCTTAAGCATCTTCTCCAACTGTGCAGCTGATTTGATCATGAAGTATAGACCTCAAGATAATTTAGTTTCTGATACACAGAAATTTACTATTCCTTGCTTTCCTCATACAATTGAGATGACTCCTCTGCAGCTTCCTAATTGGATAAGGACAAAGAGTCCTCACACTGACTATTTTGAAGCAATGTTTGAATCACAGAGAAAAAGTTATGGAACATTATACAATAGTTTTCATGAACTGGAAAGTGATTATCAAAAACTTGGTAACACTAGCATGGGGATCAAATCTTGGAGTGTAGGACCAGTTTCATCATGGGATAACAAGGATAATGAGAAAAAGGCCAATAGGGGACGCATAGAGGAGCTTGGAAAAGAGGCAGACTGGTTAAATTGGCTTAACTCAAAGCAAAACGAGTCTGTACTGTATGTAAGTTTTGGAAGTCTAGCTAGGCTAACTCATGCTCAGCTTGTAGAAATTGCACATGGGCTTGAAAATTCAGGTCATAATTTTATCTGGGTTGTAAGGAAAAAGGAGAGGGATGAGAGTGAAAACACTTTCCTTCAAGATTTTGAGGAAAGGATGAAAGAAAGCAAAAAGGGCTATATCATATGGAATTGGGCACCACAACTCTTTATATTGGATCACCCTGCAACAGGAGCGATTGTGACTCACTGTGGTTGGAACTCAACTCTTGAAAGCATAAATGCTGGTTTGCCAATGATTACATGGCCAATGTTTGGTGATCAATTTTACAATGAAAAGTTGCTCGTTGATGTTTTGAAAATAGCGGTCCCAGTTGGAGCAATAGAAAACAAGTTATGGACTAGCACTAGTAGTGAAGATGTAGTGGTGAAAAGGGAAGAGATAGCGAAGGCTGTAGAGATTTTAATGGGAAGTGGCCAAGAGAGCAAAGAAATGAGGATGAGAGCAAAGAAACTTGGTGATGCTGCCAAGACGACTATAGAGGAAGGTGGACACTCTTACAACAACTTGATTCAGTTGATTGATGAGCTGAAATCATTGAAGAAATCTAAAGCACTCGGTAATAAAGAAGATTAG

Protein sequence

>Msa1109520

MESQQSHNQLHVTFIPHPSPGHMNPMIDTARLFAMHGVNVTIIATHANASTFQKAIDSDFNSGYPIKTQLIQFPSAQVGLPDGVENFKDATSFEIQQKIGLGTYMLRDSIEALLQDLQPDCIVADMMQPWTAEQAAKLGIPRIHFYGLSIFSNCAADLIMKYRPQDNLVSDTQKFTIPCFPHTIEMTPLQLPNWIRTKSPHTDYFEAMFESQRKSYGTLYNSFHELESDYQKLGNTSMGIKSWSVGPVSSWDNKDNEKKANRGRIEELGKEADWLNWLNSKQNESVLYVSFGSLARLTHAQLVEIAHGLENSGHNFIWVVRKKERDESENTFLQDFEERMKESKKGYIIWNWAPQLFILDHPATGAIVTHCGWNSTLESINAGLPMITWPMFGDQFYNEKLLVDVLKIAVPVGAIENKLWTSTSSEDVVVKREEIAKAVEILMGSGQESKEMRMRAKKLGDAAKTTIEEGGHSYNNLIQLIDELKSLKKSKALGNKED*