AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0980940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980940 MtrunA17_Chr6g0461511 96.250 560 4 2 143 685 1 560 0.0 1113
Msa0980940 MtrunA17_Chr6g0461471 60.058 343 114 6 164 485 1 341 8.96e-133 394
Msa0980940 MtrunA17_Chr1g0149501 39.548 177 97 3 499 675 30 196 3.07e-34 132
Msa0980940 MtrunA17_Chr4g0055251 41.892 74 43 0 602 675 3 76 6.41e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980940 AT5G18200.1 49.702 336 148 4 168 483 14 348 6.77e-116 352

Find 164 sgRNAs with CRISPR-Local

Find 497 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGAAAACAACTGTGATTT+TGG 0.113532 6_4:+19596165 Msa0980940:CDS
GAAGAAAGCTTCGGACTTTA+AGG 0.118306 6_4:+19590421 Msa0980940:CDS
TTTGAGCAAATGAGACTTTC+TGG 0.153740 6_4:-19596809 None:intergenic
GAAAGAACGAATGGTGAATT+AGG 0.182607 6_4:-19590192 None:intergenic
TCATTATATGATGTTATCTT+AGG 0.214283 6_4:+19596976 Msa0980940:three_prime_UTR
GTTGGATGGTGGTGAGGTTT+TGG 0.251730 6_4:+19590622 Msa0980940:CDS
TAAGAATTCAATTACCTCTT+TGG 0.253375 6_4:-19595943 None:intergenic
TCCTAGCCAATCTGATTTAT+AGG 0.268321 6_4:+19596887 Msa0980940:three_prime_UTR
GATTCTTCCAGAAGGAGATT+TGG 0.282702 6_4:-19596767 None:intergenic
CCATTTCATCATCCAATTCA+TGG 0.288659 6_4:-19593853 None:intergenic
CTCGAGAGTATCTGCTGAAT+TGG 0.290913 6_4:+19596062 Msa0980940:CDS
AGAATTAGAAATGGAAAATT+CGG 0.308880 6_4:+19596540 Msa0980940:CDS
CTCTGCACACTTCCATGAAT+TGG 0.309156 6_4:+19593841 Msa0980940:CDS
ATGAACCGAATTGGAAGATT+AGG 0.317682 6_4:+19590546 Msa0980940:CDS
ATCTCTCCCAAATCTCCTTC+TGG 0.323139 6_4:+19596760 Msa0980940:three_prime_UTR
GAAACATTGTTTGGAACAAT+TGG 0.325735 6_4:-19593653 None:intergenic
ATTCTTCCAGAAGGAGATTT+GGG 0.325851 6_4:-19596766 None:intergenic
GCGTTTGCCACCAACGGTTT+TGG 0.330783 6_4:-19590154 None:intergenic
TGAATGTATGTTATTCTAGA+TGG 0.334232 6_4:-19589281 None:intergenic
AATCAACTGTTTGGAATGAA+TGG 0.338993 6_4:+19590375 Msa0980940:CDS
CGTTGATAGTTGATTCTTTG+AGG 0.339844 6_4:-19589375 None:intergenic
CGTTGATAGTTGATTCTTTG+AGG 0.339844 6_4:-19589435 None:intergenic
CATCCATCACCATTTCTAAC+AGG 0.340093 6_4:-19596286 None:intergenic
TCGCAGTTTCAATTACTTCA+TGG 0.342193 6_4:-19596339 None:intergenic
TTTACCGAAAATCAACTGTT+TGG 0.353650 6_4:+19590366 Msa0980940:CDS
TACAAGTGCTTAATGTACTT+TGG 0.359441 6_4:+19596952 Msa0980940:three_prime_UTR
CAAATCTAACCTTTGGTCAT+TGG 0.362322 6_4:-19596929 None:intergenic
TGATTCTTTGAGGTTGATCT+AGG 0.385692 6_4:-19589365 None:intergenic
TGATTCTTTGAGGTTGATCT+AGG 0.385692 6_4:-19589425 None:intergenic
CTAGGTGAAGTGTTCTTAAG+AGG 0.386356 6_4:-19589347 None:intergenic
ACAAGTGCTTAATGTACTTT+GGG 0.389424 6_4:+19596953 Msa0980940:three_prime_UTR
GCAGCATCCTCAGGCAAAAC+AGG 0.393377 6_4:-19595247 None:intergenic
CTCCTCAAAACCGCCGGATT+CGG 0.396406 6_4:-19590581 None:intergenic
GATGATGGGTTTGTGTTGGA+TGG 0.399424 6_4:+19590608 Msa0980940:CDS
AAAGAACGAATGGTGAATTA+GGG 0.400381 6_4:-19590191 None:intergenic
TGAGTCTATCAAATATGTTC+AGG 0.400935 6_4:+19590775 Msa0980940:CDS
TGAACCGAATTGGAAGATTA+GGG 0.405403 6_4:+19590547 Msa0980940:CDS
AGACGGGCAGAAACATTGTT+TGG 0.406511 6_4:-19593662 None:intergenic
AATGTCTGTAATATGTCTTT+CGG 0.410278 6_4:-19596439 None:intergenic
AAGAAAGCTTCGGACTTTAA+GGG 0.410858 6_4:+19590422 Msa0980940:CDS
TAGTAATAGGATCAGAGAAT+TGG 0.415230 6_4:+19590745 Msa0980940:CDS
TTCCGTTTGATGAACCGAAT+TGG 0.416004 6_4:+19590537 Msa0980940:CDS
CCATGAATTGGATGATGAAA+TGG 0.416074 6_4:+19593853 Msa0980940:CDS
TTCTAGATTAGAATTAGAAA+TGG 0.416916 6_4:+19596531 Msa0980940:CDS
CATTGAGAGTCCTGTGCATT+CGG 0.417283 6_4:+19590670 Msa0980940:CDS
TAGATTAAAAGTGGAACATC+TGG 0.419148 6_4:+19596565 Msa0980940:exon
TTCCAATTCGGTTCATCAAA+CGG 0.423615 6_4:-19590539 None:intergenic
CTGAATTGGGCACGAGCCAT+TGG 0.424435 6_4:+19596076 Msa0980940:CDS
CAGAGCTGGCATACAGTCAT+TGG 0.433137 6_4:+19595155 Msa0980940:CDS
ACTTGTACAAATCTAACCTT+TGG 0.433997 6_4:-19596936 None:intergenic
GGAAGTGTGCAGAGTGATAC+CGG 0.436493 6_4:-19593832 None:intergenic
TGTGCATTCGGAGCAGTTGT+TGG 0.442340 6_4:+19590682 Msa0980940:CDS
CCTCAGCTGATTCCGACAAC+TGG 0.444495 6_4:+19595193 Msa0980940:CDS
GATGGGTTTGTGTTGGATGG+TGG 0.446729 6_4:+19590611 Msa0980940:CDS
ATATAGTTTGGTGGGATCAA+TGG 0.447741 6_4:+19589248 Msa0980940:intron
ACTAGTCCATTGCGTGGTGA+TGG 0.447820 6_4:+19595130 Msa0980940:CDS
TTGAGCAAATGAGACTTTCT+GGG 0.449991 6_4:-19596808 None:intergenic
AGAATCTTTGCAGCATCCTC+AGG 0.453021 6_4:-19595256 None:intergenic
TCATTCTCATAGTCAAATCC+TGG 0.454234 6_4:+19593625 Msa0980940:CDS
GATGCATTAGCTCGCAAGAC+TGG 0.455880 6_4:+19596223 Msa0980940:CDS
ATTTGGATCTTCTTCCTCAT+CGG 0.456914 6_4:-19590339 None:intergenic
ACAACCCTAATCTTCCAATT+CGG 0.457062 6_4:-19590551 None:intergenic
GGTTGTTGAGAGTCCGAATC+CGG 0.461837 6_4:+19590568 Msa0980940:intron
GATTCAGTAATGGACGTTCA+TGG 0.463634 6_4:-19589535 None:intergenic
ATCAACTGTTTGGAATGAAT+GGG 0.467033 6_4:+19590376 Msa0980940:CDS
GAGCCATTGGGAGAGAGCAC+GGG 0.469261 6_4:+19596089 Msa0980940:CDS
TTTGGATGATGGGTTTGTGT+TGG 0.469528 6_4:+19590604 Msa0980940:CDS
TTGAGATATGGGTTGTTCCC+CGG 0.472936 6_4:+19593813 Msa0980940:CDS
TCGAGAGTATCTGCTGAATT+GGG 0.475872 6_4:+19596063 Msa0980940:CDS
CTATAATCCACAATCTTAGT+TGG 0.475886 6_4:-19595906 None:intergenic
GAATTCAATTACCTCTTTGG+TGG 0.480591 6_4:-19595940 None:intergenic
CGTATAATACGAATCCTAGT+AGG 0.484679 6_4:+19590453 Msa0980940:CDS
AGAGGAAGACCTGTTAGAAA+TGG 0.484950 6_4:+19596277 Msa0980940:CDS
AAAACCTCGCCAACATCCTT+CGG 0.485711 6_4:-19590713 None:intergenic
GTGGATATAGATGATTGTAA+TGG 0.486850 6_4:-19589497 None:intergenic
TGAATTGGGCACGAGCCATT+GGG 0.487838 6_4:+19596077 Msa0980940:CDS
GAGACTTTCTGGGATTTCAC+AGG 0.490453 6_4:-19596798 None:intergenic
AGTGTTACAACCGTACTCAT+AGG 0.490629 6_4:-19596832 None:intergenic
AGCACAGTCAATTAAAACTA+AGG 0.496819 6_4:-19596594 None:intergenic
CGAGCCATTGGGAGAGAGCA+CGG 0.499186 6_4:+19596088 Msa0980940:CDS
TTACAGGCACTTGATCTTGG+AGG 0.500262 6_4:+19595037 Msa0980940:intron
TGGATATAGATGATTGTAAT+GGG 0.500421 6_4:-19589496 None:intergenic
TAATGATGTTGATCTTCATA+CGG 0.500611 6_4:-19589464 None:intergenic
GTTTGTGTTGGATGGTGGTG+AGG 0.503953 6_4:+19590616 Msa0980940:CDS
AAGTGGCGAAGAGAAGTCTT+TGG 0.504021 6_4:+19596387 Msa0980940:CDS
AACACTTAATATAGTTTGGT+GGG 0.506284 6_4:+19589240 Msa0980940:intron
AAAAGACATCTTTCTAAGAG+TGG 0.507146 6_4:-19595071 None:intergenic
GGAACAACCCATATCTCAAA+AGG 0.510202 6_4:-19593809 None:intergenic
CCAAGCTCAAAACCAGTTGT+CGG 0.513221 6_4:-19595205 None:intergenic
AAGTAATTGAAACTGCGATC+GGG 0.517225 6_4:+19596344 Msa0980940:CDS
GTGTGGATCATAAAGTTGTA+TGG 0.525886 6_4:-19595109 None:intergenic
TTTACCTCCAACTAAGATTG+TGG 0.530003 6_4:+19595899 Msa0980940:CDS
ACCATTCGTTCTTTCAACAC+TGG 0.531477 6_4:+19590200 Msa0980940:CDS
GATTGAAGAAGAGGATAGGA+AGG 0.534376 6_4:+19596146 Msa0980940:CDS
TATTTGTGACATTCAACTTG+AGG 0.538401 6_4:+19593727 Msa0980940:CDS
AAGCTTCCTATAAATCAGAT+TGG 0.539524 6_4:-19596893 None:intergenic
CTAGTCCATTGCGTGGTGAT+GGG 0.539912 6_4:+19595131 Msa0980940:CDS
GATTTGACGCCGAAGGATGT+TGG 0.540124 6_4:+19590704 Msa0980940:CDS
TTTGCTCAAACCTATGAGTA+CGG 0.540166 6_4:+19596822 Msa0980940:three_prime_UTR
CGGAACCAATGAAAAGAAGT+AGG 0.542610 6_4:-19593771 None:intergenic
AATTCGGCATAGATTAAAAG+TGG 0.542885 6_4:+19596556 Msa0980940:exon
CAACACTTAATATAGTTTGG+TGG 0.543714 6_4:+19589239 Msa0980940:intron
AGATAAAACGAAGAAAGCTT+CGG 0.545303 6_4:+19590412 Msa0980940:CDS
TTGGAACAATTGGCAAGCCC+AGG 0.545421 6_4:-19593643 None:intergenic
ACACACGGCTTATTCCTACT+AGG 0.547965 6_4:-19590467 None:intergenic
AGAAAGCTTCGGACTTTAAG+GGG 0.551243 6_4:+19590423 Msa0980940:CDS
GTTGTTGGATTTGACGCCGA+AGG 0.553373 6_4:+19590697 Msa0980940:CDS
TAATCCACAATCTTAGTTGG+AGG 0.553577 6_4:-19595903 None:intergenic
ATGAGAACCAAAACCGTTGG+TGG 0.555752 6_4:+19590147 Msa0980940:CDS
CGAACGGCGTTTGCCACCAA+CGG 0.555890 6_4:-19590160 None:intergenic
GGTGAAGTGTTATCTTCATA+CGG 0.556970 6_4:-19589404 None:intergenic
TAACAGGTCTTCCTCTCAGT+CGG 0.558034 6_4:-19596270 None:intergenic
AACAACTGCTCCGAATGCAC+AGG 0.558901 6_4:-19590680 None:intergenic
GGTCTTCCTCTCAGTCGGAA+TGG 0.566394 6_4:-19596265 None:intergenic
TCCAAACTCCTCAAAACCGC+CGG 0.568354 6_4:-19590587 None:intergenic
AAAGGAAATGAAGCAGCAAA+CGG 0.568655 6_4:-19593791 None:intergenic
GAAGTGTGCAGAGTGATACC+GGG 0.570950 6_4:-19593831 None:intergenic
GCGTGGTGATGGGTCAGAGC+TGG 0.574501 6_4:+19595141 Msa0980940:CDS
CATTCTCATAGTCAAATCCT+GGG 0.575192 6_4:+19593626 Msa0980940:CDS
GGTGGGATCAATGGTCAAGA+TGG 0.575635 6_4:+19589257 Msa0980940:CDS
TAGGTGAAGTGTTCTTAAGA+GGG 0.577664 6_4:-19589346 None:intergenic
ATAGATGATTGTAATGGGTG+AGG 0.578158 6_4:-19589491 None:intergenic
TTCTTGAACATTGAATCAGA+AGG 0.580135 6_4:-19589311 None:intergenic
GAAGTAATTGAAACTGCGAT+CGG 0.582267 6_4:+19596343 Msa0980940:CDS
TTCCTGTGTTTGCACATGAA+AGG 0.585708 6_4:+19595293 Msa0980940:CDS
AAGACTGGAACAAAGAAATG+TGG 0.586177 6_4:+19596238 Msa0980940:CDS
ACGTTCATGGACGGATGTAG+TGG 0.586547 6_4:-19589522 None:intergenic
ACAATGGCGGATTGAAGAAG+AGG 0.587218 6_4:+19596137 Msa0980940:CDS
TCCTATAAATCAGATTGGCT+AGG 0.589536 6_4:-19596888 None:intergenic
CTCTTCGCCACTTAGCCGAC+CGG 0.590945 6_4:-19596377 None:intergenic
AGACTTTCTGGGATTTCACA+GGG 0.595594 6_4:-19596797 None:intergenic
TACCTTTCATGTGCAAACAC+AGG 0.597392 6_4:-19595295 None:intergenic
ACCATGAGAACCAAAACCGT+TGG 0.597638 6_4:+19590144 Msa0980940:CDS
TGTTATTGACCAATGACCAA+AGG 0.599026 6_4:+19596920 Msa0980940:three_prime_UTR
TGGAAAATATAGACAATACA+AGG 0.599857 6_4:+19596201 Msa0980940:CDS
AAGCCGTGTGTGTATTGCAT+TGG 0.600783 6_4:+19590479 Msa0980940:CDS
GCGATCGGGAGCACATATGC+CGG 0.610976 6_4:+19596358 Msa0980940:CDS
CAGTAATGGACGTTCATGGA+CGG 0.617171 6_4:-19589531 None:intergenic
ACCAGTGTTGAAAGAACGAA+TGG 0.618296 6_4:-19590201 None:intergenic
CTGTTAGAAATGGTGATGGA+TGG 0.620170 6_4:+19596287 Msa0980940:CDS
AAACCCGTGCTCTCTCCCAA+TGG 0.622311 6_4:-19596092 None:intergenic
ATGGACGGATGTAGTGGACG+TGG 0.622613 6_4:-19589516 None:intergenic
AGACCTGTTAGAAATGGTGA+TGG 0.628565 6_4:+19596283 Msa0980940:CDS
GACGCCGAAGGATGTTGGCG+AGG 0.629659 6_4:+19590709 Msa0980940:CDS
TGATGCATTCACCACCAAAG+AGG 0.630981 6_4:+19595929 Msa0980940:CDS
TGTTGAGAGTCCGAATCCGG+CGG 0.631477 6_4:+19590571 Msa0980940:intron
GGCGGATTGAAGAAGAGGAT+AGG 0.632863 6_4:+19596142 Msa0980940:CDS
TCTGACCCATCACCACGCAA+TGG 0.638701 6_4:-19595136 None:intergenic
AGACTGGAACAAAGAAATGT+GGG 0.639374 6_4:+19596239 Msa0980940:CDS
GAAAGATAGATTCTTCCAGA+AGG 0.640993 6_4:-19596775 None:intergenic
AATTAGGGTTGATTAACGAA+CGG 0.647083 6_4:-19590176 None:intergenic
CCAGTTGTCGGAATCAGCTG+AGG 0.654012 6_4:-19595193 None:intergenic
TTCAGCAGATACTCTCGAGT+AGG 0.654168 6_4:-19596058 None:intergenic
GGGTGTCCATTCCGACTGAG+AGG 0.661322 6_4:+19596259 Msa0980940:CDS
ATCATTCAAAGATCAGACAA+TGG 0.661996 6_4:+19596121 Msa0980940:CDS
TGGAAAGTGAACGTAGTGTG+TGG 0.664110 6_4:+19596307 Msa0980940:CDS
TGACCAATGCAATACACACA+CGG 0.674183 6_4:-19590482 None:intergenic
CACCACGCAATGGACTAGTG+TGG 0.677508 6_4:-19595126 None:intergenic
ATCCACACTAGTCCATTGCG+TGG 0.680704 6_4:+19595124 Msa0980940:CDS
TCGGGAGCACATATGCCGGT+CGG 0.680903 6_4:+19596362 Msa0980940:CDS
TGGATCATAAAGTTGTATGG+CGG 0.697778 6_4:-19595106 None:intergenic
ATTCAAAGATCAGACAATGG+CGG 0.698505 6_4:+19596124 Msa0980940:CDS
TCATGAAGATGAATGTAGTG+AGG 0.706412 6_4:+19590502 Msa0980940:CDS
AAGTGTGCAGAGTGATACCG+GGG 0.743726 6_4:-19593830 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAGAAATTTTGAATTTTT+AGG + chr6_4:19590851-19590870 Msa0980940:intron 10.0%
!!! ATAGAAATTTTGAATTTTTA+GGG + chr6_4:19590852-19590871 Msa0980940:intron 10.0%
!!! TTATGTTTAGAATAAAATAA+AGG + chr6_4:19592097-19592116 Msa0980940:intron 10.0%
!! TTGAAAAATTAAATAAGAAA+TGG + chr6_4:19594070-19594089 Msa0980940:intron 10.0%
!!! GTTTATAATTGTTGTTTTAT+AGG + chr6_4:19590874-19590893 Msa0980940:intron 15.0%
!!! TTATAATTGTTATTTGACTT+TGG + chr6_4:19593318-19593337 Msa0980940:intron 15.0%
!!! TATAATTGTTATTTGACTTT+GGG + chr6_4:19593319-19593338 Msa0980940:intron 15.0%
!! ATTTATATTTATACAGAACA+AGG - chr6_4:19593478-19593497 None:intergenic 15.0%
!!! TTGATTTTATTAATCTTTGA+AGG + chr6_4:19593562-19593581 Msa0980940:intron 15.0%
!! AAATAAATGTCAAGATATAA+TGG - chr6_4:19595018-19595037 None:intergenic 15.0%
!! TTAATTTATCTATCATTACA+TGG + chr6_4:19595611-19595630 Msa0980940:intron 15.0%
!! CTGATAAATAAACTCAATTA+CGG + chr6_4:19589585-19589604 Msa0980940:intron 20.0%
!!! TTTTTGTTGCTTTTAGTAAT+AGG + chr6_4:19590732-19590751 Msa0980940:CDS 20.0%
!!! TTGTTGTTTTATAGGAAAAT+TGG + chr6_4:19590882-19590901 Msa0980940:intron 20.0%
!!! TTGTATATGTGATTTTTGTA+AGG + chr6_4:19591989-19592008 Msa0980940:intron 20.0%
!!! ACTTAAAAGTAGTTTTTCAA+TGG + chr6_4:19592140-19592159 Msa0980940:intron 20.0%
!! AATTACATTATTGTAAGAAC+TGG - chr6_4:19592744-19592763 None:intergenic 20.0%
!!! GGTTTCTAAAATTTATGAAT+AGG - chr6_4:19592864-19592883 None:intergenic 20.0%
!! CACTGAATACAAATAAAAAA+GGG - chr6_4:19592966-19592985 None:intergenic 20.0%
!! ACACTGAATACAAATAAAAA+AGG - chr6_4:19592967-19592986 None:intergenic 20.0%
!!! TATAAGAACTTTTACAACAA+GGG - chr6_4:19593138-19593157 None:intergenic 20.0%
!!! ATATAAGAACTTTTACAACA+AGG - chr6_4:19593139-19593158 None:intergenic 20.0%
!!! TTTTGCATTTCAACATAAAT+AGG - chr6_4:19593902-19593921 None:intergenic 20.0%
!!! ATAGGACATAAATTTTGATT+AGG + chr6_4:19594156-19594175 Msa0980940:intron 20.0%
!! TTAGGAATTATAGTATAACA+CGG + chr6_4:19594174-19594193 Msa0980940:intron 20.0%
!! CTTTGAATGATAAATTGAAA+TGG - chr6_4:19594344-19594363 None:intergenic 20.0%
!!! TATTTATTCTCGTTTTTTCA+CGG - chr6_4:19594621-19594640 None:intergenic 20.0%
!! AAAAACGAGAATAAATATAG+TGG + chr6_4:19594624-19594643 Msa0980940:intron 20.0%
!!! ATATAGTGGAAGAAAATAAA+AGG + chr6_4:19594638-19594657 Msa0980940:intron 20.0%
!!! TATCTTGACATTTATTTTAC+AGG + chr6_4:19595021-19595040 Msa0980940:intron 20.0%
!! ATTTAGACATGTAATATTGT+TGG + chr6_4:19595556-19595575 Msa0980940:intron 20.0%
!! TTTAAATCCAGTAAAAATCT+GGG - chr6_4:19595698-19595717 None:intergenic 20.0%
!! ATTTAAATCCAGTAAAAATC+TGG - chr6_4:19595699-19595718 None:intergenic 20.0%
!!! GTATTGTTGAATTTTTTTGA+AGG + chr6_4:19595862-19595881 Msa0980940:intron 20.0%
!! TTCTAGATTAGAATTAGAAA+TGG + chr6_4:19596531-19596550 Msa0980940:CDS 20.0%
!! AGAATTAGAAATGGAAAATT+CGG + chr6_4:19596540-19596559 Msa0980940:CDS 20.0%
!! TCATTATATGATGTTATCTT+AGG + chr6_4:19596976-19596995 Msa0980940:three_prime_UTR 20.0%
! TGAAAGTAAATTATATCGTC+TGG + chr6_4:19589214-19589233 Msa0980940:intron 25.0%
! GATCAACACTTAATATAGTT+TGG + chr6_4:19589236-19589255 Msa0980940:intron 25.0%
! AACACTTAATATAGTTTGGT+GGG + chr6_4:19589240-19589259 Msa0980940:intron 25.0%
! TGAATGTATGTTATTCTAGA+TGG - chr6_4:19589284-19589303 None:intergenic 25.0%
! TAATGATGTTGATCTTCATA+CGG - chr6_4:19589467-19589486 None:intergenic 25.0%
! TGGATATAGATGATTGTAAT+GGG - chr6_4:19589499-19589518 None:intergenic 25.0%
!!! ACTTTTTTTTTACACAACTC+TGG + chr6_4:19589640-19589659 Msa0980940:intron 25.0%
! GTGATAATAATTTCAGAAAG+TGG + chr6_4:19591491-19591510 Msa0980940:intron 25.0%
! ATTGTGAAGAATAAATCCTT+TGG + chr6_4:19592509-19592528 Msa0980940:intron 25.0%
! TTGTGAAGAATAAATCCTTT+GGG + chr6_4:19592510-19592529 Msa0980940:intron 25.0%
! AACAAGATTAACTATGGTAA+AGG + chr6_4:19592565-19592584 Msa0980940:intron 25.0%
! TGTGATAATTTCTTCTTTCA+GGG - chr6_4:19592721-19592740 None:intergenic 25.0%
! ATTTATGAATAGGTCCTAAT+TGG - chr6_4:19592854-19592873 None:intergenic 25.0%
!!! CATAAATTTTAGAAACCGAA+TGG + chr6_4:19592867-19592886 Msa0980940:intron 25.0%
! ACAAATAAAAAAGGGAATGA+AGG - chr6_4:19592958-19592977 None:intergenic 25.0%
! GAAATCAATGTTATCAATAG+CGG - chr6_4:19593088-19593107 None:intergenic 25.0%
! TAAGCTATGATTTATGATCT+AGG + chr6_4:19593291-19593310 Msa0980940:intron 25.0%
! AATGACAAATTACATGAAAC+AGG - chr6_4:19593535-19593554 None:intergenic 25.0%
!!! AAGGATTTTTTTTATCAGAC+AGG + chr6_4:19593695-19593714 Msa0980940:intron 25.0%
!!! AGGATTTTTTTTATCAGACA+GGG + chr6_4:19593696-19593715 Msa0980940:intron 25.0%
!!! TTCATTTCCTTTTGAGATAT+GGG + chr6_4:19593802-19593821 Msa0980940:CDS 25.0%
!! TAGATGCTAGATCTTTTATA+AGG + chr6_4:19594014-19594033 Msa0980940:intron 25.0%
!! AGATGCTAGATCTTTTATAA+GGG + chr6_4:19594015-19594034 Msa0980940:intron 25.0%
! TGTTATTCAGTTACATTTGA+AGG - chr6_4:19594226-19594245 None:intergenic 25.0%
! CATAGTTTCGAGAAAAAAAT+AGG - chr6_4:19594408-19594427 None:intergenic 25.0%
! ATCAGAAATATGTGAATGTT+AGG + chr6_4:19594452-19594471 Msa0980940:intron 25.0%
! TCAGAAATATGTGAATGTTA+GGG + chr6_4:19594453-19594472 Msa0980940:intron 25.0%
!!! AAAAAGCATCATAAAACTTC+TGG + chr6_4:19594569-19594588 Msa0980940:intron 25.0%
!! TTCACGGATTAATAAACATA+GGG - chr6_4:19594605-19594624 None:intergenic 25.0%
!! TTTCACGGATTAATAAACAT+AGG - chr6_4:19594606-19594625 None:intergenic 25.0%
! TCATAATTCCAATGTCTATT+AGG - chr6_4:19594837-19594856 None:intergenic 25.0%
! TAATAGACATTGGAATTATG+AGG + chr6_4:19594836-19594855 Msa0980940:intron 25.0%
! TTACCAACTATATATACATG+TGG + chr6_4:19594953-19594972 Msa0980940:intron 25.0%
! TTACCACATGTATATATAGT+TGG - chr6_4:19594959-19594978 None:intergenic 25.0%
!! TGAAAGGTATGAAATTTACT+CGG + chr6_4:19595309-19595328 Msa0980940:intron 25.0%
! TTATTTGATGTCAAGAACTT+AGG - chr6_4:19595461-19595480 None:intergenic 25.0%
! CTTGACATCAAATAATCAAA+TGG + chr6_4:19595466-19595485 Msa0980940:intron 25.0%
! TTAGCATCTTGATTGAAATA+TGG + chr6_4:19595520-19595539 Msa0980940:intron 25.0%
! AGTATATGAATAACGTGAAA+AGG - chr6_4:19595587-19595606 None:intergenic 25.0%
!! CATAACACTTGATAAACTTT+TGG - chr6_4:19595723-19595742 None:intergenic 25.0%
! CAAAAGTTTATCAAGTGTTA+TGG + chr6_4:19595721-19595740 Msa0980940:intron 25.0%
!!! TCTCTTTAAGTTTTGAGATT+TGG + chr6_4:19595774-19595793 Msa0980940:intron 25.0%
!!! AAGTTTTGAGATTTGGTTTT+TGG + chr6_4:19595781-19595800 Msa0980940:intron 25.0%
!!! GTTTCTGAGAGTTTATTTTA+AGG + chr6_4:19595835-19595854 Msa0980940:intron 25.0%
! TAAGAATTCAATTACCTCTT+TGG - chr6_4:19595946-19595965 None:intergenic 25.0%
! TGGAAAATATAGACAATACA+AGG + chr6_4:19596201-19596220 Msa0980940:CDS 25.0%
! AATGTCTGTAATATGTCTTT+CGG - chr6_4:19596442-19596461 None:intergenic 25.0%
!!! TACTTTCCATTTTTTTGCAA+TGG + chr6_4:19596634-19596653 Msa0980940:three_prime_UTR 25.0%
!! AAAGTACCATTGCAAAAAAA+TGG - chr6_4:19596643-19596662 None:intergenic 25.0%
CAACACTTAATATAGTTTGG+TGG + chr6_4:19589239-19589258 Msa0980940:intron 30.0%
TTCTTGAACATTGAATCAGA+AGG - chr6_4:19589314-19589333 None:intergenic 30.0%
GTGGATATAGATGATTGTAA+TGG - chr6_4:19589500-19589519 None:intergenic 30.0%
TTTATCAGATGATTCAGTAG+TGG - chr6_4:19589573-19589592 None:intergenic 30.0%
ATCAATTGATCGAATCATCT+AGG - chr6_4:19589885-19589904 None:intergenic 30.0%
! AATTAGGGTTGATTAACGAA+CGG - chr6_4:19590179-19590198 None:intergenic 30.0%
AAAGAACGAATGGTGAATTA+GGG - chr6_4:19590194-19590213 None:intergenic 30.0%
GGTTAATGAAAACGATGAAT+GGG - chr6_4:19590248-19590267 None:intergenic 30.0%
CAAAAAAGGGGTGAAAATTA+GGG - chr6_4:19590312-19590331 None:intergenic 30.0%
! GATTTTCGGTAAATTGGATT+TGG - chr6_4:19590359-19590378 None:intergenic 30.0%
!! ACAGTTGATTTTCGGTAAAT+TGG - chr6_4:19590365-19590384 None:intergenic 30.0%
TTTACCGAAAATCAACTGTT+TGG + chr6_4:19590366-19590385 Msa0980940:CDS 30.0%
!! CATTCCAAACAGTTGATTTT+CGG - chr6_4:19590373-19590392 None:intergenic 30.0%
! AATCAACTGTTTGGAATGAA+TGG + chr6_4:19590375-19590394 Msa0980940:CDS 30.0%
! ATCAACTGTTTGGAATGAAT+GGG + chr6_4:19590376-19590395 Msa0980940:CDS 30.0%
AGATAAAACGAAGAAAGCTT+CGG + chr6_4:19590412-19590431 Msa0980940:CDS 30.0%
! AATGTAGTGAGGAGATTTTT+AGG + chr6_4:19590513-19590532 Msa0980940:CDS 30.0%
! ATGTAGTGAGGAGATTTTTA+GGG + chr6_4:19590514-19590533 Msa0980940:CDS 30.0%
TAGTAATAGGATCAGAGAAT+TGG + chr6_4:19590745-19590764 Msa0980940:CDS 30.0%
TGAGTCTATCAAATATGTTC+AGG + chr6_4:19590775-19590794 Msa0980940:CDS 30.0%
!!! ATGTTCAGGTTTGTTTTTTG+TGG + chr6_4:19590789-19590808 Msa0980940:intron 30.0%
AATGAAAGTGAATGTGATAC+TGG + chr6_4:19590917-19590936 Msa0980940:intron 30.0%
! TTTTTATCTGACCAGAGAAT+AGG + chr6_4:19591071-19591090 Msa0980940:intron 30.0%
AGACTATGAAATTGTGTAGT+TGG + chr6_4:19591101-19591120 Msa0980940:intron 30.0%
ATTCAAACCAGATACATTGT+CGG - chr6_4:19591235-19591254 None:intergenic 30.0%
!!! CTATCTGTTTTGAAATTGTG+TGG + chr6_4:19591266-19591285 Msa0980940:intron 30.0%
ATTCAAACCAGATACATTGT+CGG - chr6_4:19591235-19591254 None:intergenic 30.0%
!!! CTATCAGTTTTGAAATTGTG+TGG + chr6_4:19591388-19591407 Msa0980940:intron 30.0%
! TATATGTGTAAGTGTTGTGT+CGG + chr6_4:19591531-19591550 Msa0980940:intron 30.0%
TATCTGGACATGACTTTAAT+TGG + chr6_4:19591573-19591592 Msa0980940:intron 30.0%
!! ACTTTAATTGGAAGTGTCAA+TGG + chr6_4:19591585-19591604 Msa0980940:intron 30.0%
! ACGTTTTTGATAGACTCAAA+AGG - chr6_4:19591677-19591696 None:intergenic 30.0%
GAGTCTATCAAAAACGTTTA+AGG + chr6_4:19591680-19591699 Msa0980940:intron 30.0%
! TGAGATTTTTCTCTCTTGTT+TGG + chr6_4:19592191-19592210 Msa0980940:intron 30.0%
ACAATGCACACAATTGATAA+TGG + chr6_4:19592320-19592339 Msa0980940:intron 30.0%
TGTAAAGATATGTTCCTTAG+TGG + chr6_4:19592467-19592486 Msa0980940:intron 30.0%
GTAAAGATATGTTCCTTAGT+GGG + chr6_4:19592468-19592487 Msa0980940:intron 30.0%
TAGTTAATCTTGTTCGAGAT+GGG - chr6_4:19592559-19592578 None:intergenic 30.0%
ATAGTTAATCTTGTTCGAGA+TGG - chr6_4:19592560-19592579 None:intergenic 30.0%
ATCTCGAACAAGATTAACTA+TGG + chr6_4:19592559-19592578 Msa0980940:intron 30.0%
AAGATTAACTATGGTAAAGG+AGG + chr6_4:19592568-19592587 Msa0980940:intron 30.0%
AAGTAAGCCTTCAATATAAG+TGG + chr6_4:19592680-19592699 Msa0980940:intron 30.0%
AGTAAGCCTTCAATATAAGT+GGG + chr6_4:19592681-19592700 Msa0980940:intron 30.0%
GTGTGATAATTTCTTCTTTC+AGG - chr6_4:19592722-19592741 None:intergenic 30.0%
ATTAAGAAAATAAGTCCCAG+AGG - chr6_4:19592783-19592802 None:intergenic 30.0%
AATATGCATGTTTGCCAATT+AGG + chr6_4:19592837-19592856 Msa0980940:intron 30.0%
AGTAATACTCATTGACCATT+CGG - chr6_4:19592885-19592904 None:intergenic 30.0%
CAAAAATCTGCTATGTTAGA+TGG - chr6_4:19593060-19593079 None:intergenic 30.0%
! CATCTAACATAGCAGATTTT+TGG + chr6_4:19593058-19593077 Msa0980940:intron 30.0%
! TATGTGAGCTTGAATCTTTT+TGG + chr6_4:19593170-19593189 Msa0980940:intron 30.0%
GACACTTCTAATATGAAAGT+AGG + chr6_4:19593223-19593242 Msa0980940:intron 30.0%
!! TTGAAGGTGTTTAAAAACCA+TGG + chr6_4:19593578-19593597 Msa0980940:intron 30.0%
! GAAACATTGTTTGGAACAAT+TGG - chr6_4:19593656-19593675 None:intergenic 30.0%
AATCCTTCATATTTCCAAGA+CGG - chr6_4:19593682-19593701 None:intergenic 30.0%
TATTTGTGACATTCAACTTG+AGG + chr6_4:19593727-19593746 Msa0980940:CDS 30.0%
! ATCTTCCTACTTCTTTTCAT+TGG + chr6_4:19593766-19593785 Msa0980940:CDS 30.0%
!!! CTTCATTTCCTTTTGAGATA+TGG + chr6_4:19593801-19593820 Msa0980940:CDS 30.0%
TCGTATCACACATGATTTAA+AGG + chr6_4:19593952-19593971 Msa0980940:intron 30.0%
ATGAAATAATTCAGCAGTCT+AGG + chr6_4:19594425-19594444 Msa0980940:intron 30.0%
CAGAAATATGTGAATGTTAG+GGG + chr6_4:19594454-19594473 Msa0980940:intron 30.0%
AGAAATATGTGAATGTTAGG+GGG + chr6_4:19594455-19594474 Msa0980940:intron 30.0%
TTTAGACAATAACCTCCAAA+CGG - chr6_4:19594988-19595007 None:intergenic 30.0%
TTTGGAGGTTATTGTCTAAA+AGG + chr6_4:19594988-19595007 Msa0980940:intron 30.0%
! AAAAGACATCTTTCTAAGAG+TGG - chr6_4:19595074-19595093 None:intergenic 30.0%
! CTTGATTGAAATATGGACTA+TGG + chr6_4:19595527-19595546 Msa0980940:intron 30.0%
ATATGAATAACGTGAAAAGG+AGG - chr6_4:19595584-19595603 None:intergenic 30.0%
TTTATCAAGTGTTATGGCAT+TGG + chr6_4:19595727-19595746 Msa0980940:intron 30.0%
! TGGCATTGGAATTTAAATTC+TGG + chr6_4:19595741-19595760 Msa0980940:intron 30.0%
! GGCATTGGAATTTAAATTCT+GGG + chr6_4:19595742-19595761 Msa0980940:intron 30.0%
!!! TCTGAGAGTTTATTTTAAGG+TGG + chr6_4:19595838-19595857 Msa0980940:intron 30.0%
CTATAATCCACAATCTTAGT+TGG - chr6_4:19595909-19595928 None:intergenic 30.0%
ATCATTCAAAGATCAGACAA+TGG + chr6_4:19596121-19596140 Msa0980940:CDS 30.0%
! AAGGAAAACAACTGTGATTT+TGG + chr6_4:19596165-19596184 Msa0980940:CDS 30.0%
! AGGAAAACAACTGTGATTTT+GGG + chr6_4:19596166-19596185 Msa0980940:CDS 30.0%
AATTCGGCATAGATTAAAAG+TGG + chr6_4:19596556-19596575 Msa0980940:exon 30.0%
TAGATTAAAAGTGGAACATC+TGG + chr6_4:19596565-19596584 Msa0980940:exon 30.0%
AGCACAGTCAATTAAAACTA+AGG - chr6_4:19596597-19596616 None:intergenic 30.0%
AAGCTTCCTATAAATCAGAT+TGG - chr6_4:19596896-19596915 None:intergenic 30.0%
ACTTGTACAAATCTAACCTT+TGG - chr6_4:19596939-19596958 None:intergenic 30.0%
TACAAGTGCTTAATGTACTT+TGG + chr6_4:19596952-19596971 Msa0980940:three_prime_UTR 30.0%
ACAAGTGCTTAATGTACTTT+GGG + chr6_4:19596953-19596972 Msa0980940:three_prime_UTR 30.0%
! TGTTTTGCTTCACTTCATGA+TGG - chr6_4:19589182-19589201 None:intergenic 35.0%
! ATATAGTTTGGTGGGATCAA+TGG + chr6_4:19589248-19589267 Msa0980940:intron 35.0%
! TAGGTGAAGTGTTCTTAAGA+GGG - chr6_4:19589349-19589368 None:intergenic 35.0%
!! TGATTCTTTGAGGTTGATCT+AGG - chr6_4:19589368-19589387 None:intergenic 35.0%
!! CGTTGATAGTTGATTCTTTG+AGG - chr6_4:19589378-19589397 None:intergenic 35.0%
! GGTGAAGTGTTATCTTCATA+CGG - chr6_4:19589407-19589426 None:intergenic 35.0%
!! TGATTCTTTGAGGTTGATCT+AGG - chr6_4:19589368-19589387 None:intergenic 35.0%
!! CGTTGATAGTTGATTCTTTG+AGG - chr6_4:19589378-19589397 None:intergenic 35.0%
!! ATAGATGATTGTAATGGGTG+AGG - chr6_4:19589494-19589513 None:intergenic 35.0%
TTTGACAGACGATTCAGTAA+TGG - chr6_4:19589548-19589567 None:intergenic 35.0%
TTGGTACAAATATCTGGTTG+TGG - chr6_4:19589800-19589819 None:intergenic 35.0%
CAGATGTTGGTACAAATATC+TGG - chr6_4:19589806-19589825 None:intergenic 35.0%
TTCATTGAGAAGAAAGATGC+TGG - chr6_4:19589843-19589862 None:intergenic 35.0%
!! TCGTACTGATTGAAAGTGTT+TGG - chr6_4:19590069-19590088 None:intergenic 35.0%
TTCTCATGGTTGCGAAAAAT+TGG - chr6_4:19590134-19590153 None:intergenic 35.0%
GAAAGAACGAATGGTGAATT+AGG - chr6_4:19590195-19590214 None:intergenic 35.0%
GGGTTAATGAAAACGATGAA+TGG - chr6_4:19590249-19590268 None:intergenic 35.0%
GCAAAAAAGGGGTGAAAATT+AGG - chr6_4:19590313-19590332 None:intergenic 35.0%
!! AATTTTCACCCCTTTTTTGC+AGG + chr6_4:19590313-19590332 Msa0980940:intron 35.0%
ATTTGGATCTTCTTCCTCAT+CGG - chr6_4:19590342-19590361 None:intergenic 35.0%
AAGAAAGCTTCGGACTTTAA+GGG + chr6_4:19590422-19590441 Msa0980940:CDS 35.0%
CGTATAATACGAATCCTAGT+AGG + chr6_4:19590453-19590472 Msa0980940:CDS 35.0%
TCATGAAGATGAATGTAGTG+AGG + chr6_4:19590502-19590521 Msa0980940:CDS 35.0%
TTCCAATTCGGTTCATCAAA+CGG - chr6_4:19590542-19590561 None:intergenic 35.0%
ATGAACCGAATTGGAAGATT+AGG + chr6_4:19590546-19590565 Msa0980940:CDS 35.0%
TGAACCGAATTGGAAGATTA+GGG + chr6_4:19590547-19590566 Msa0980940:CDS 35.0%
ACAACCCTAATCTTCCAATT+CGG - chr6_4:19590554-19590573 None:intergenic 35.0%
!! TTTTGAGGAGTTTGGATGAT+GGG + chr6_4:19590594-19590613 Msa0980940:CDS 35.0%
TCAGTTGTTAGTATTGTGTC+TGG - chr6_4:19590966-19590985 None:intergenic 35.0%
! ATGAAATTGTGTAGTTGGTG+TGG + chr6_4:19591106-19591125 Msa0980940:intron 35.0%
!!! CTGTTTTGAAATTGTGTGGT+TGG + chr6_4:19591270-19591289 Msa0980940:intron 35.0%
!!! TTTTGAAATTGTGTGGTTGG+TGG + chr6_4:19591273-19591292 Msa0980940:intron 35.0%
! TTTGAAATTGTGTGGTTGGT+GGG + chr6_4:19591274-19591293 Msa0980940:intron 35.0%
!!! CAGTTTTGAAATTGTGTGGT+TGG + chr6_4:19591392-19591411 Msa0980940:intron 35.0%
TTGTCTTCATCTATGAAGCA+CGG + chr6_4:19591426-19591445 Msa0980940:intron 35.0%
GCACTTGATAAATAAACCCT+AGG + chr6_4:19591618-19591637 Msa0980940:intron 35.0%
CTTGATAGATAAACCCTGTT+AGG + chr6_4:19591856-19591875 Msa0980940:intron 35.0%
ATAGATAAACCCTGTTAGGT+TGG + chr6_4:19591860-19591879 Msa0980940:intron 35.0%
AGCATGTTGGATATACAAGT+AGG + chr6_4:19591892-19591911 Msa0980940:intron 35.0%
ATACAAGTAGGAAGAATGTG+CGG + chr6_4:19591904-19591923 Msa0980940:intron 35.0%
AATGGTAGACATCAATCCTA+AGG - chr6_4:19591939-19591958 None:intergenic 35.0%
TTCAAGGTGGACAAAACAAA+TGG - chr6_4:19591957-19591976 None:intergenic 35.0%
TTTCAATGGAGAATAGCCAT+AGG + chr6_4:19592154-19592173 Msa0980940:intron 35.0%
GATATTAGTCCTTGTTCACT+TGG + chr6_4:19592215-19592234 Msa0980940:intron 35.0%
!! CACAATTGATAATGGATGTG+TGG + chr6_4:19592328-19592347 Msa0980940:intron 35.0%
!! TAATGGATGTGTGGTCATTT+TGG + chr6_4:19592337-19592356 Msa0980940:intron 35.0%
!!! ATGTGTGGTCATTTTGGAAT+AGG + chr6_4:19592343-19592362 Msa0980940:intron 35.0%
!! GTAGTCGAACTTTTTCTAGT+TGG + chr6_4:19592378-19592397 Msa0980940:intron 35.0%
TATGGTAAAGGAGGATGTAT+AGG + chr6_4:19592577-19592596 Msa0980940:intron 35.0%
ATGGTAAAGGAGGATGTATA+GGG + chr6_4:19592578-19592597 Msa0980940:intron 35.0%
ATCACACAAACACTATGCAT+CGG - chr6_4:19592625-19592644 None:intergenic 35.0%
GTAAGCCTTCAATATAAGTG+GGG + chr6_4:19592682-19592701 Msa0980940:intron 35.0%
TAAGCCTTCAATATAAGTGG+GGG + chr6_4:19592683-19592702 Msa0980940:intron 35.0%
ATAACCCCCACTTATATTGA+AGG - chr6_4:19592690-19592709 None:intergenic 35.0%
TGTTAGTTAAGTAAAGCCTC+TGG + chr6_4:19592764-19592783 Msa0980940:intron 35.0%
GTTAGTTAAGTAAAGCCTCT+GGG + chr6_4:19592765-19592784 Msa0980940:intron 35.0%
!!! GAATCTTTTTGGCTGCTTTA+CGG + chr6_4:19593181-19593200 Msa0980940:intron 35.0%
AAAAACCATGGTGAAAAAGC+TGG + chr6_4:19593590-19593609 Msa0980940:CDS 35.0%
TCATTCTCATAGTCAAATCC+TGG + chr6_4:19593625-19593644 Msa0980940:CDS 35.0%
CATTCTCATAGTCAAATCCT+GGG + chr6_4:19593626-19593645 Msa0980940:CDS 35.0%
ATCCTTCATATTTCCAAGAC+GGG - chr6_4:19593681-19593700 None:intergenic 35.0%
AAAGGAAATGAAGCAGCAAA+CGG - chr6_4:19593794-19593813 None:intergenic 35.0%
CCATTTCATCATCCAATTCA+TGG - chr6_4:19593856-19593875 None:intergenic 35.0%
CCATGAATTGGATGATGAAA+TGG + chr6_4:19593853-19593872 Msa0980940:CDS 35.0%
GAAATGGTGTTTGAATGTCA+TGG + chr6_4:19594086-19594105 Msa0980940:intron 35.0%
TGTCCTATCCTGTATGATTA+AGG - chr6_4:19594144-19594163 None:intergenic 35.0%
AACACAACATAACACAATCC+AGG - chr6_4:19594283-19594302 None:intergenic 35.0%
! CAAGACTGTGATGCATTTTA+TGG - chr6_4:19594377-19594396 None:intergenic 35.0%
AGCATCATAAAACTTCTGGT+TGG + chr6_4:19594573-19594592 Msa0980940:intron 35.0%
! GCATCATAAAACTTCTGGTT+GGG + chr6_4:19594574-19594593 Msa0980940:intron 35.0%
TGCATAAAAACTCTGAGCTA+TGG + chr6_4:19594721-19594740 Msa0980940:intron 35.0%
ACATGGCAATAATTAGCAAG+AGG + chr6_4:19594777-19594796 Msa0980940:intron 35.0%
! ATTTAGGGCCTAATAGACAT+TGG + chr6_4:19594826-19594845 Msa0980940:intron 35.0%
! TTGAGCTATAGACACAGTTT+TGG + chr6_4:19594907-19594926 Msa0980940:intron 35.0%
ATGTGGTAATTTCTTCCGTT+TGG + chr6_4:19594970-19594989 Msa0980940:intron 35.0%
! ATTTTACAGGCACTTGATCT+TGG + chr6_4:19595034-19595053 Msa0980940:intron 35.0%
TGGATCATAAAGTTGTATGG+CGG - chr6_4:19595109-19595128 None:intergenic 35.0%
GTGTGGATCATAAAGTTGTA+TGG - chr6_4:19595112-19595131 None:intergenic 35.0%
! CAGCAGACAAGTTTGAAATT+AGG - chr6_4:19595338-19595357 None:intergenic 35.0%
CTCTCAAATGCACCTAAATA+GGG - chr6_4:19595428-19595447 None:intergenic 35.0%
TCTCTCAAATGCACCTAAAT+AGG - chr6_4:19595429-19595448 None:intergenic 35.0%
!!! TGAATTTTTTTGAAGGCGCA+TGG + chr6_4:19595869-19595888 Msa0980940:intron 35.0%
TTTACCTCCAACTAAGATTG+TGG + chr6_4:19595899-19595918 Msa0980940:CDS 35.0%
TAATCCACAATCTTAGTTGG+AGG - chr6_4:19595906-19595925 None:intergenic 35.0%
GAATTCAATTACCTCTTTGG+TGG - chr6_4:19595943-19595962 None:intergenic 35.0%
ATTCAAAGATCAGACAATGG+CGG + chr6_4:19596124-19596143 Msa0980940:CDS 35.0%
AAGACTGGAACAAAGAAATG+TGG + chr6_4:19596238-19596257 Msa0980940:CDS 35.0%
AGACTGGAACAAAGAAATGT+GGG + chr6_4:19596239-19596258 Msa0980940:CDS 35.0%
TCGCAGTTTCAATTACTTCA+TGG - chr6_4:19596342-19596361 None:intergenic 35.0%
GAAGTAATTGAAACTGCGAT+CGG + chr6_4:19596343-19596362 Msa0980940:CDS 35.0%
AAGTAATTGAAACTGCGATC+GGG + chr6_4:19596344-19596363 Msa0980940:CDS 35.0%
!!! ATCTAGAACGTTTTAGCTGT+TGG - chr6_4:19596519-19596538 None:intergenic 35.0%
ATTCTTCCAGAAGGAGATTT+GGG - chr6_4:19596769-19596788 None:intergenic 35.0%
GAAAGATAGATTCTTCCAGA+AGG - chr6_4:19596778-19596797 None:intergenic 35.0%
TTGAGCAAATGAGACTTTCT+GGG - chr6_4:19596811-19596830 None:intergenic 35.0%
TTTGAGCAAATGAGACTTTC+TGG - chr6_4:19596812-19596831 None:intergenic 35.0%
TTTGCTCAAACCTATGAGTA+CGG + chr6_4:19596822-19596841 Msa0980940:three_prime_UTR 35.0%
TCCTAGCCAATCTGATTTAT+AGG + chr6_4:19596887-19596906 Msa0980940:three_prime_UTR 35.0%
! TCCTATAAATCAGATTGGCT+AGG - chr6_4:19596891-19596910 None:intergenic 35.0%
TGTTATTGACCAATGACCAA+AGG + chr6_4:19596920-19596939 Msa0980940:three_prime_UTR 35.0%
CAAATCTAACCTTTGGTCAT+TGG - chr6_4:19596932-19596951 None:intergenic 35.0%
! CTAGGTGAAGTGTTCTTAAG+AGG - chr6_4:19589350-19589369 None:intergenic 40.0%
!! GATTCAGTAATGGACGTTCA+TGG - chr6_4:19589538-19589557 None:intergenic 40.0%
GTATAATGCGAGACAGATGT+TGG - chr6_4:19589819-19589838 None:intergenic 40.0%
ACCATTCGTTCTTTCAACAC+TGG + chr6_4:19590200-19590219 Msa0980940:CDS 40.0%
! ACCAGTGTTGAAAGAACGAA+TGG - chr6_4:19590204-19590223 None:intergenic 40.0%
AGGGGTGAAAATTAGGGTTA+GGG - chr6_4:19590306-19590325 None:intergenic 40.0%
AAGGGGTGAAAATTAGGGTT+AGG - chr6_4:19590307-19590326 None:intergenic 40.0%
! ATCGGTTTCCTGCAAAAAAG+GGG - chr6_4:19590324-19590343 None:intergenic 40.0%
!! CATCGGTTTCCTGCAAAAAA+GGG - chr6_4:19590325-19590344 None:intergenic 40.0%
!! TCATCGGTTTCCTGCAAAAA+AGG - chr6_4:19590326-19590345 None:intergenic 40.0%
!!! TTTTTTGCAGGAAACCGATG+AGG + chr6_4:19590325-19590344 Msa0980940:intron 40.0%
GAAGAAAGCTTCGGACTTTA+AGG + chr6_4:19590421-19590440 Msa0980940:CDS 40.0%
AGAAAGCTTCGGACTTTAAG+GGG + chr6_4:19590423-19590442 Msa0980940:CDS 40.0%
TGACCAATGCAATACACACA+CGG - chr6_4:19590485-19590504 None:intergenic 40.0%
TTCCGTTTGATGAACCGAAT+TGG + chr6_4:19590537-19590556 Msa0980940:CDS 40.0%
!!! GTTTTGAGGAGTTTGGATGA+TGG + chr6_4:19590593-19590612 Msa0980940:CDS 40.0%
!! TTTGGATGATGGGTTTGTGT+TGG + chr6_4:19590604-19590623 Msa0980940:CDS 40.0%
GTTAGTATTGTGTCTGGTGT+CGG - chr6_4:19590960-19590979 None:intergenic 40.0%
CAGATACATTGTCAATGTCG+CGG - chr6_4:19590989-19591008 None:intergenic 40.0%
GTCTCAAATCACCTATTCTC+TGG - chr6_4:19591085-19591104 None:intergenic 40.0%
! TTGAAATTGTGTGGTTGGTG+GGG + chr6_4:19591275-19591294 Msa0980940:intron 40.0%
! TTGAAATTGTGTGGTTGGTG+TGG + chr6_4:19591275-19591294 Msa0980940:intron 40.0%
GTCGCAATCAATATCATGTC+TGG - chr6_4:19591455-19591474 None:intergenic 40.0%
! CGGATCTAATCTGAAGTATC+TGG + chr6_4:19591557-19591576 Msa0980940:intron 40.0%
TCTGTTGCTCAAACAACCTA+GGG - chr6_4:19591637-19591656 None:intergenic 40.0%
TTCTGTTGCTCAAACAACCT+AGG - chr6_4:19591638-19591657 None:intergenic 40.0%
TATATGTGTCAGTGTCGTGT+TGG + chr6_4:19591764-19591783 Msa0980940:intron 40.0%
! TGTTTTGTCCACCTTGAACA+AGG + chr6_4:19591959-19591978 Msa0980940:intron 40.0%
CACTACTCTCACATTACCTA+TGG - chr6_4:19592173-19592192 None:intergenic 40.0%
TGGCTTAGTGGAACTATTCT+AGG + chr6_4:19592250-19592269 Msa0980940:intron 40.0%
AAGATATGTTCCTTAGTGGG+AGG + chr6_4:19592471-19592490 Msa0980940:intron 40.0%
AAACCAAATACCTCCCACTA+AGG - chr6_4:19592484-19592503 None:intergenic 40.0%
AGGATGTATAGGGATACAAG+TGG + chr6_4:19592588-19592607 Msa0980940:intron 40.0%
TCACACAAACACTATGCATC+GGG - chr6_4:19592624-19592643 None:intergenic 40.0%
! AAATAGCGGAAGCTACAAAG+TGG - chr6_4:19593020-19593039 None:intergenic 40.0%
ATAGTGTTGCCAGCAAATAG+CGG - chr6_4:19593034-19593053 None:intergenic 40.0%
! CAAGGGACACAAAGTTTTCA+AGG - chr6_4:19593121-19593140 None:intergenic 40.0%
CTTTACGGCTGTGTTTGTAT+GGG + chr6_4:19593196-19593215 Msa0980940:intron 40.0%
TTTACGGCTGTGTTTGTATG+GGG + chr6_4:19593197-19593216 Msa0980940:intron 40.0%
ATACAGAACAAGGCAAGACT+AGG - chr6_4:19593468-19593487 None:intergenic 40.0%
TTATGACGGTTGTCTTCTTC+TGG + chr6_4:19593507-19593526 Msa0980940:intron 40.0%
CGGAACCAATGAAAAGAAGT+AGG - chr6_4:19593774-19593793 None:intergenic 40.0%
GGAACAACCCATATCTCAAA+AGG - chr6_4:19593812-19593831 None:intergenic 40.0%
GTGCCTTAATCATACAGGAT+AGG + chr6_4:19594138-19594157 Msa0980940:intron 40.0%
AATCCAGGTTTACCACACAA+AGG - chr6_4:19594268-19594287 None:intergenic 40.0%
TGCATCACAGTCTTGAATCA+TGG + chr6_4:19594382-19594401 Msa0980940:intron 40.0%
ACAGATGCAACAGCTGAATT+TGG + chr6_4:19594665-19594684 Msa0980940:intron 40.0%
! GTTTTTATGCAGTTCCAGTC+AGG - chr6_4:19594712-19594731 None:intergenic 40.0%
TAACAGGTGAACTCAGAACA+TGG + chr6_4:19594760-19594779 Msa0980940:intron 40.0%
CTGTATGCGATGGACATTTA+GGG + chr6_4:19594811-19594830 Msa0980940:intron 40.0%
TGGTAATTTCTTCCGTTTGG+AGG + chr6_4:19594973-19594992 Msa0980940:intron 40.0%
TTCCTGTGTTTGCACATGAA+AGG + chr6_4:19595293-19595312 Msa0980940:CDS 40.0%
TACCTTTCATGTGCAAACAC+AGG - chr6_4:19595298-19595317 None:intergenic 40.0%
GTGAGACTAAGTCCCTATTT+AGG + chr6_4:19595413-19595432 Msa0980940:intron 40.0%
CATTACATGGATACGAGAAG+AGG + chr6_4:19595624-19595643 Msa0980940:intron 40.0%
!! TTGGTAGCCCAGATTTTTAC+TGG + chr6_4:19595688-19595707 Msa0980940:intron 40.0%
!!! ATTTTTTTGAAGGCGCATGG+TGG + chr6_4:19595872-19595891 Msa0980940:intron 40.0%
!!! TTTTTTTGAAGGCGCATGGT+GGG + chr6_4:19595873-19595892 Msa0980940:intron 40.0%
!! TCGAGAGTATCTGCTGAATT+GGG + chr6_4:19596063-19596082 Msa0980940:CDS 40.0%
GATTGAAGAAGAGGATAGGA+AGG + chr6_4:19596146-19596165 Msa0980940:CDS 40.0%
!!! ATTTTGGGTTGCGAAAGAAG+TGG + chr6_4:19596181-19596200 Msa0980940:CDS 40.0%
AGAGGAAGACCTGTTAGAAA+TGG + chr6_4:19596277-19596296 Msa0980940:CDS 40.0%
AGACCTGTTAGAAATGGTGA+TGG + chr6_4:19596283-19596302 Msa0980940:CDS 40.0%
CATCCATCACCATTTCTAAC+AGG - chr6_4:19596289-19596308 None:intergenic 40.0%
!! CTGTTAGAAATGGTGATGGA+TGG + chr6_4:19596287-19596306 Msa0980940:CDS 40.0%
GATTCTTCCAGAAGGAGATT+TGG - chr6_4:19596770-19596789 None:intergenic 40.0%
!! AGACTTTCTGGGATTTCACA+GGG - chr6_4:19596800-19596819 None:intergenic 40.0%
AGTGTTACAACCGTACTCAT+AGG - chr6_4:19596835-19596854 None:intergenic 40.0%
!! CAGTAATGGACGTTCATGGA+CGG - chr6_4:19589534-19589553 None:intergenic 45.0%
CGTCGAGCACTTAATTACTC+TGG + chr6_4:19589610-19589629 Msa0980940:intron 45.0%
GCTATTTGAATGGAGAAGGG+AGG - chr6_4:19590018-19590037 None:intergenic 45.0%
GCGGCTATTTGAATGGAGAA+GGG - chr6_4:19590021-19590040 None:intergenic 45.0%
TGCGGCTATTTGAATGGAGA+AGG - chr6_4:19590022-19590041 None:intergenic 45.0%
GAGAGATGCGGCTATTTGAA+TGG - chr6_4:19590028-19590047 None:intergenic 45.0%
ACCATGAGAACCAAAACCGT+TGG + chr6_4:19590144-19590163 Msa0980940:CDS 45.0%
!!! ACCAACGGTTTTGGTTCTCA+TGG - chr6_4:19590148-19590167 None:intergenic 45.0%
ATGAGAACCAAAACCGTTGG+TGG + chr6_4:19590147-19590166 Msa0980940:CDS 45.0%
!!! GAATGGGAGTGTCGTTTTGA+AGG - chr6_4:19590232-19590251 None:intergenic 45.0%
ACACACGGCTTATTCCTACT+AGG - chr6_4:19590470-19590489 None:intergenic 45.0%
AAGCCGTGTGTGTATTGCAT+TGG + chr6_4:19590479-19590498 Msa0980940:CDS 45.0%
!! GATGATGGGTTTGTGTTGGA+TGG + chr6_4:19590608-19590627 Msa0980940:CDS 45.0%
!!! ATGGTGGTGAGGTTTTGGAT+GGG + chr6_4:19590627-19590646 Msa0980940:CDS 45.0%
!!! GTGAGGTTTTGGATGGGTTT+GGG + chr6_4:19590633-19590652 Msa0980940:CDS 45.0%
CATTGAGAGTCCTGTGCATT+CGG + chr6_4:19590670-19590689 Msa0980940:CDS 45.0%
AAAACCTCGCCAACATCCTT+CGG - chr6_4:19590716-19590735 None:intergenic 45.0%
TAATATCACCCCATCGTGTC+TGG - chr6_4:19591164-19591183 None:intergenic 45.0%
ATCAGTATCGTGTCTGGTGT+CGG - chr6_4:19591205-19591224 None:intergenic 45.0%
GTCACTATCAGTATCGTGTC+TGG - chr6_4:19591211-19591230 None:intergenic 45.0%
AGTGACACCGACAATGTATC+TGG + chr6_4:19591225-19591244 Msa0980940:intron 45.0%
GTCACTATCAGTATCGTGTC+TGG - chr6_4:19591211-19591230 None:intergenic 45.0%
AGTGACACCGACAATGTATC+TGG + chr6_4:19591225-19591244 Msa0980940:intron 45.0%
! TGTAAGTGTTGTGTCGGTGT+CGG + chr6_4:19591537-19591556 Msa0980940:intron 45.0%
! TCAGTGTCGTGTTGGTGTTT+GGG + chr6_4:19591772-19591791 Msa0980940:intron 45.0%
TCCACTCTACCAACCTAACA+GGG - chr6_4:19591872-19591891 None:intergenic 45.0%
TTCCACTCTACCAACCTAAC+AGG - chr6_4:19591873-19591892 None:intergenic 45.0%
! TTGGTAGAGTGGAAGCATGT+TGG + chr6_4:19591879-19591898 Msa0980940:intron 45.0%
TTGTCCACCTTGAACAAGGT+TGG + chr6_4:19591963-19591982 Msa0980940:intron 45.0%
ACAAGAGCCAACCTTGTTCA+AGG - chr6_4:19591973-19591992 None:intergenic 45.0%
CATTGCATGCCAAGTGAACA+AGG - chr6_4:19592227-19592246 None:intergenic 45.0%
TGTTCACTTGGCATGCAATG+AGG + chr6_4:19592227-19592246 Msa0980940:intron 45.0%
GTGTGCATTGTTCGTCCTTA+AGG - chr6_4:19592311-19592330 None:intergenic 45.0%
TCCTTAAGCACTCAGCAACA+AGG + chr6_4:19592408-19592427 Msa0980940:intron 45.0%
ACCTTGTTGCTGAGTGCTTA+AGG - chr6_4:19592412-19592431 None:intergenic 45.0%
TAAGCACTCAGCAACAAGGT+CGG + chr6_4:19592412-19592431 Msa0980940:intron 45.0%
ACTTCCTACTTTCAGCAGCA+TGG - chr6_4:19592448-19592467 None:intergenic 45.0%
!! GTTCCTTAGTGGGAGGTATT+TGG + chr6_4:19592478-19592497 Msa0980940:intron 45.0%
! GTGATCGTTTTGCATCTCGA+AGG + chr6_4:19592640-19592659 Msa0980940:intron 45.0%
TTGTAGCTTCCGCTATTTGC+TGG + chr6_4:19593022-19593041 Msa0980940:intron 45.0%
GCTTTACGGCTGTGTTTGTA+TGG + chr6_4:19593195-19593214 Msa0980940:intron 45.0%
! GTGCTTCACATCACTGACTA+TGG + chr6_4:19593380-19593399 Msa0980940:intron 45.0%
AGACGGGCAGAAACATTGTT+TGG - chr6_4:19593665-19593684 None:intergenic 45.0%
! AACAATGTTTCTGCCCGTCT+TGG + chr6_4:19593665-19593684 Msa0980940:intron 45.0%
TGCCCGTCTTGGAAATATGA+AGG + chr6_4:19593676-19593695 Msa0980940:intron 45.0%
! TTGAGATATGGGTTGTTCCC+CGG + chr6_4:19593813-19593832 Msa0980940:CDS 45.0%
CTCTGCACACTTCCATGAAT+TGG + chr6_4:19593841-19593860 Msa0980940:CDS 45.0%
GGCACGTGACAATTAGAACT+AGG - chr6_4:19594205-19594224 None:intergenic 45.0%
TTCACACATCTGCCTTTGTG+TGG + chr6_4:19594253-19594272 Msa0980940:intron 45.0%
! GATAGTGGCTAAGAGCATGA+TGG + chr6_4:19594496-19594515 Msa0980940:intron 45.0%
GATGCAACAGCTGAATTTGG+TGG + chr6_4:19594668-19594687 Msa0980940:intron 45.0%
AGAACAAGCTGTGGTGTAAC+AGG + chr6_4:19594744-19594763 Msa0980940:intron 45.0%
TGTCAATGTCCTGTATGCGA+TGG + chr6_4:19594801-19594820 Msa0980940:intron 45.0%
CCTAAATGTCCATCGCATAC+AGG - chr6_4:19594813-19594832 None:intergenic 45.0%
CCTGTATGCGATGGACATTT+AGG + chr6_4:19594810-19594829 Msa0980940:intron 45.0%
TTACAGGCACTTGATCTTGG+AGG + chr6_4:19595037-19595056 Msa0980940:intron 45.0%
CCAAGCTCAAAACCAGTTGT+CGG - chr6_4:19595208-19595227 None:intergenic 45.0%
!!! ACTGGTTTTGAGCTTGGAAC+TGG + chr6_4:19595211-19595230 Msa0980940:CDS 45.0%
!!! CTGGTTTTGAGCTTGGAACT+GGG + chr6_4:19595212-19595231 Msa0980940:CDS 45.0%
! CATCAATCCTGTTTTGCCTG+AGG + chr6_4:19595240-19595259 Msa0980940:CDS 45.0%
AGAATCTTTGCAGCATCCTC+AGG - chr6_4:19595259-19595278 None:intergenic 45.0%
GTGACTCTTTGTGTCAGCTT+AGG + chr6_4:19595386-19595405 Msa0980940:intron 45.0%
CAGTCAAGCCAAGACATTGT+TGG + chr6_4:19595669-19595688 Msa0980940:intron 45.0%
TGATGCATTCACCACCAAAG+AGG + chr6_4:19595929-19595948 Msa0980940:CDS 45.0%
TTCAGCAGATACTCTCGAGT+AGG - chr6_4:19596061-19596080 None:intergenic 45.0%
!! CTCGAGAGTATCTGCTGAAT+TGG + chr6_4:19596062-19596081 Msa0980940:CDS 45.0%
!! ACAATGGCGGATTGAAGAAG+AGG + chr6_4:19596137-19596156 Msa0980940:CDS 45.0%
TAACAGGTCTTCCTCTCAGT+CGG - chr6_4:19596273-19596292 None:intergenic 45.0%
TGGAAAGTGAACGTAGTGTG+TGG + chr6_4:19596307-19596326 Msa0980940:CDS 45.0%
AAGTGGCGAAGAGAAGTCTT+TGG + chr6_4:19596387-19596406 Msa0980940:CDS 45.0%
ATCTCTCCCAAATCTCCTTC+TGG + chr6_4:19596760-19596779 Msa0980940:three_prime_UTR 45.0%
!! GAGACTTTCTGGGATTTCAC+AGG - chr6_4:19596801-19596820 None:intergenic 45.0%
!! AAAAAATTGAAAAAAAATTA+GGG - chr6_4:19590269-19590288 None:intergenic 5.0%
!! AAAAAAATTGAAAAAAAATT+AGG - chr6_4:19590270-19590289 None:intergenic 5.0%
!! TAAATATAAATATATTATGA+CGG + chr6_4:19593493-19593512 Msa0980940:intron 5.0%
!!! CTTATTTTTTTTTTTTTTTA+AGG + chr6_4:19595962-19595981 Msa0980940:intron 5.0%
!!! TTCTATTAATTTTTATTTTT+AGG + chr6_4:19596030-19596049 Msa0980940:intron 5.0%
GGTGGGATCAATGGTCAAGA+TGG + chr6_4:19589257-19589276 Msa0980940:CDS 50.0%
ACGTTCATGGACGGATGTAG+TGG - chr6_4:19589525-19589544 None:intergenic 50.0%
TAGCCGCATCTCTCTGACTT+AGG + chr6_4:19590034-19590053 Msa0980940:intron 50.0%
AGCCGCATCTCTCTGACTTA+GGG + chr6_4:19590035-19590054 Msa0980940:intron 50.0%
TGCCCTAAGTCAGAGAGATG+CGG - chr6_4:19590040-19590059 None:intergenic 50.0%
GGTTGTTGAGAGTCCGAATC+CGG + chr6_4:19590568-19590587 Msa0980940:intron 50.0%
TCCAAACTCCTCAAAACCGC+CGG - chr6_4:19590590-19590609 None:intergenic 50.0%
! GATGGGTTTGTGTTGGATGG+TGG + chr6_4:19590611-19590630 Msa0980940:CDS 50.0%
! GTTTGTGTTGGATGGTGGTG+AGG + chr6_4:19590616-19590635 Msa0980940:CDS 50.0%
!! GTTGGATGGTGGTGAGGTTT+TGG + chr6_4:19590622-19590641 Msa0980940:CDS 50.0%
!!! GATGGTGGTGAGGTTTTGGA+TGG + chr6_4:19590626-19590645 Msa0980940:CDS 50.0%
!!! GGTGAGGTTTTGGATGGGTT+TGG + chr6_4:19590632-19590651 Msa0980940:CDS 50.0%
AACAACTGCTCCGAATGCAC+AGG - chr6_4:19590683-19590702 None:intergenic 50.0%
TGTGCATTCGGAGCAGTTGT+TGG + chr6_4:19590682-19590701 Msa0980940:CDS 50.0%
GTTGTTGGATTTGACGCCGA+AGG + chr6_4:19590697-19590716 Msa0980940:CDS 50.0%
GATTTGACGCCGAAGGATGT+TGG + chr6_4:19590704-19590723 Msa0980940:CDS 50.0%
! TGTCTGGTGTCAGTGCTTCA+TGG - chr6_4:19591148-19591167 None:intergenic 50.0%
! GTCAGTGTCGTGTTGGTGTT+TGG + chr6_4:19591771-19591790 Msa0980940:intron 50.0%
! TCGTGTTGGTGTTTGGGCAT+TGG + chr6_4:19591778-19591797 Msa0980940:intron 50.0%
CTGAAATCGTGTCCAGACTC+CGG - chr6_4:19591810-19591829 None:intergenic 50.0%
!! ACCCTGTTAGGTTGGTAGAG+TGG + chr6_4:19591868-19591887 Msa0980940:intron 50.0%
AGTAGGAAGAATGTGCGGAG+TGG + chr6_4:19591909-19591928 Msa0980940:intron 50.0%
TGTGCGGAGTGGTATACCTT+AGG + chr6_4:19591920-19591939 Msa0980940:intron 50.0%
AGAGCCAACCTTGTTCAAGG+TGG - chr6_4:19591970-19591989 None:intergenic 50.0%
TCACTTGGCATGCAATGAGG+TGG + chr6_4:19592230-19592249 Msa0980940:intron 50.0%
CATGCAATGAGGTGGCTTAG+TGG + chr6_4:19592238-19592257 Msa0980940:intron 50.0%
GCTTCCTTGTTGCTGCCTTA+AGG + chr6_4:19592293-19592312 Msa0980940:intron 50.0%
TCGTCCTTAAGGCAGCAACA+AGG - chr6_4:19592300-19592319 None:intergenic 50.0%
GGAACCATGCTGCTGAAAGT+AGG + chr6_4:19592441-19592460 Msa0980940:intron 50.0%
CAAGGCTTGACATCACCCAA+AGG - chr6_4:19592528-19592547 None:intergenic 50.0%
AGCGTGGCTCAATTACTGAG+AGG - chr6_4:19592932-19592951 None:intergenic 50.0%
!!! CTGCACCAGCTTTTTCACCA+TGG - chr6_4:19593598-19593617 None:intergenic 50.0%
TTGGAACAATTGGCAAGCCC+AGG - chr6_4:19593646-19593665 None:intergenic 50.0%
AAGTGTGCAGAGTGATACCG+GGG - chr6_4:19593833-19593852 None:intergenic 50.0%
GAAGTGTGCAGAGTGATACC+GGG - chr6_4:19593834-19593853 None:intergenic 50.0%
! GGAAGTGTGCAGAGTGATAC+CGG - chr6_4:19593835-19593854 None:intergenic 50.0%
CTGCCTTTGTGTGGTAAACC+TGG + chr6_4:19594262-19594281 Msa0980940:intron 50.0%
AGCACAGTGAGTCGTGATAG+TGG + chr6_4:19594481-19594500 Msa0980940:intron 50.0%
! TTTGGTGGTCACAGTCCGTT+AGG + chr6_4:19594683-19594702 Msa0980940:intron 50.0%
GTTCCAGTCAGGTCACCTAA+CGG - chr6_4:19594701-19594720 None:intergenic 50.0%
GAGCTATGGAGAACAAGCTG+TGG + chr6_4:19594735-19594754 Msa0980940:intron 50.0%
ATCCACACTAGTCCATTGCG+TGG + chr6_4:19595124-19595143 Msa0980940:CDS 50.0%
ACTAGTCCATTGCGTGGTGA+TGG + chr6_4:19595130-19595149 Msa0980940:CDS 50.0%
CTAGTCCATTGCGTGGTGAT+GGG + chr6_4:19595131-19595150 Msa0980940:CDS 50.0%
CAGAGCTGGCATACAGTCAT+TGG + chr6_4:19595155-19595174 Msa0980940:CDS 50.0%
!!! CCGACAACTGGTTTTGAGCT+TGG + chr6_4:19595205-19595224 Msa0980940:CDS 50.0%
CTGGGCTACCAACAATGTCT+TGG - chr6_4:19595680-19595699 None:intergenic 50.0%
TGAATTGGGCACGAGCCATT+GGG + chr6_4:19596077-19596096 Msa0980940:CDS 50.0%
!! GGCGGATTGAAGAAGAGGAT+AGG + chr6_4:19596142-19596161 Msa0980940:CDS 50.0%
GATGCATTAGCTCGCAAGAC+TGG + chr6_4:19596223-19596242 Msa0980940:CDS 50.0%
!! ATGGACGGATGTAGTGGACG+TGG - chr6_4:19589519-19589538 None:intergenic 55.0%
! GCGTTTGCCACCAACGGTTT+TGG - chr6_4:19590157-19590176 None:intergenic 55.0%
TGTTGAGAGTCCGAATCCGG+CGG + chr6_4:19590571-19590590 Msa0980940:intron 55.0%
CTCCTCAAAACCGCCGGATT+CGG - chr6_4:19590584-19590603 None:intergenic 55.0%
!!! TCCGGCGGTTTTGAGGAGTT+TGG + chr6_4:19590586-19590605 Msa0980940:CDS 55.0%
!! AGCACTGACACCAGACACGA+TGG + chr6_4:19591151-19591170 Msa0980940:intron 55.0%
! GCACTGACACCAGACACGAT+GGG + chr6_4:19591152-19591171 Msa0980940:intron 55.0%
CACTGACACCAGACACGATG+GGG + chr6_4:19591153-19591172 Msa0980940:intron 55.0%
! CAGCAACAAGGTCGGCTTAG+TGG + chr6_4:19592420-19592439 Msa0980940:intron 55.0%
!! TCGAGATGGGCTGAGCAACA+AGG - chr6_4:19592546-19592565 None:intergenic 55.0%
AAGGGAATGAAGGCAGAGCG+TGG - chr6_4:19592948-19592967 None:intergenic 55.0%
AGTCCGTTAGGTGACCTGAC+TGG + chr6_4:19594695-19594714 Msa0980940:intron 55.0%
!! CACCACGCAATGGACTAGTG+TGG - chr6_4:19595129-19595148 None:intergenic 55.0%
TCTGACCCATCACCACGCAA+TGG - chr6_4:19595139-19595158 None:intergenic 55.0%
CCAGTTGTCGGAATCAGCTG+AGG - chr6_4:19595196-19595215 None:intergenic 55.0%
! CCTCAGCTGATTCCGACAAC+TGG + chr6_4:19595193-19595212 Msa0980940:CDS 55.0%
GCAGCATCCTCAGGCAAAAC+AGG - chr6_4:19595250-19595269 None:intergenic 55.0%
CTGAATTGGGCACGAGCCAT+TGG + chr6_4:19596076-19596095 Msa0980940:CDS 55.0%
AAACCCGTGCTCTCTCCCAA+TGG - chr6_4:19596095-19596114 None:intergenic 55.0%
GGTCTTCCTCTCAGTCGGAA+TGG - chr6_4:19596268-19596287 None:intergenic 55.0%
ACATATGCCGGTCGGCTAAG+TGG + chr6_4:19596370-19596389 Msa0980940:CDS 55.0%
CGAACGGCGTTTGCCACCAA+CGG - chr6_4:19590163-19590182 None:intergenic 60.0%
! GTCCGAATCCGGCGGTTTTG+AGG + chr6_4:19590579-19590598 Msa0980940:CDS 60.0%
!! GTTTGGGCATTGGCATGCGC+CGG + chr6_4:19591788-19591807 Msa0980940:intron 60.0%
GCTTCTGTCACGTGTGTCGC+AGG - chr6_4:19594047-19594066 None:intergenic 60.0%
CGAGCCATTGGGAGAGAGCA+CGG + chr6_4:19596088-19596107 Msa0980940:CDS 60.0%
! GAGCCATTGGGAGAGAGCAC+GGG + chr6_4:19596089-19596108 Msa0980940:CDS 60.0%
GGGTGTCCATTCCGACTGAG+AGG + chr6_4:19596259-19596278 Msa0980940:CDS 60.0%
! GCGATCGGGAGCACATATGC+CGG + chr6_4:19596358-19596377 Msa0980940:CDS 60.0%
! TCGGGAGCACATATGCCGGT+CGG + chr6_4:19596362-19596381 Msa0980940:CDS 60.0%
CTCTTCGCCACTTAGCCGAC+CGG - chr6_4:19596380-19596399 None:intergenic 60.0%
GACGCCGAAGGATGTTGGCG+AGG + chr6_4:19590709-19590728 Msa0980940:CDS 65.0%
CATTGGCATGCGCCGGAGTC+TGG + chr6_4:19591795-19591814 Msa0980940:intron 65.0%
!! GCGTGGTGATGGGTCAGAGC+TGG + chr6_4:19595141-19595160 Msa0980940:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 19589135 19597015 19589135 ID=Msa0980940;Name=Msa0980940
chr6_4 mRNA 19589135 19597015 19589135 ID=Msa0980940-mRNA-1;Parent=Msa0980940;Name=Msa0980940-mRNA-1;_AED=0.06;_eAED=0.10;_QI=0|0.5|0.27|1|0.5|0.27|11|448|685
chr6_4 exon 19589135 19589218 19589135 ID=Msa0980940-mRNA-1:exon:6102;Parent=Msa0980940-mRNA-1
chr6_4 exon 19589254 19589324 19589254 ID=Msa0980940-mRNA-1:exon:6103;Parent=Msa0980940-mRNA-1
chr6_4 exon 19589335 19589542 19589335 ID=Msa0980940-mRNA-1:exon:6104;Parent=Msa0980940-mRNA-1
chr6_4 exon 19590084 19590221 19590084 ID=Msa0980940-mRNA-1:exon:6105;Parent=Msa0980940-mRNA-1
chr6_4 exon 19590335 19590568 19590335 ID=Msa0980940-mRNA-1:exon:6106;Parent=Msa0980940-mRNA-1
chr6_4 exon 19590578 19590796 19590578 ID=Msa0980940-mRNA-1:exon:6107;Parent=Msa0980940-mRNA-1
chr6_4 exon 19593584 19593670 19593584 ID=Msa0980940-mRNA-1:exon:6108;Parent=Msa0980940-mRNA-1
chr6_4 exon 19593713 19593874 19593713 ID=Msa0980940-mRNA-1:exon:6109;Parent=Msa0980940-mRNA-1
chr6_4 exon 19595043 19595314 19595043 ID=Msa0980940-mRNA-1:exon:6110;Parent=Msa0980940-mRNA-1
chr6_4 exon 19595884 19595950 19595884 ID=Msa0980940-mRNA-1:exon:6111;Parent=Msa0980940-mRNA-1
chr6_4 exon 19596052 19597015 19596052 ID=Msa0980940-mRNA-1:exon:6112;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19589135 19589218 19589135 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19589254 19589324 19589254 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19589335 19589542 19589335 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19590084 19590221 19590084 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19590335 19590568 19590335 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19590578 19590796 19590578 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19593584 19593670 19593584 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19593713 19593874 19593713 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19595043 19595314 19595043 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19595884 19595950 19595884 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 CDS 19596052 19596567 19596052 ID=Msa0980940-mRNA-1:cds;Parent=Msa0980940-mRNA-1
chr6_4 three_prime_UTR 19596568 19597015 19596568 ID=Msa0980940-mRNA-1:three_prime_utr;Parent=Msa0980940-mRNA-1
Gene Sequence

>Msa0980940

ATGTTTTGGTCAAAGTTCATGAAGTCTCGATCAAAGCATGATAGCCATCATGAAGTGAAGCAAAACAAACAACATCTTCTGAAATTTGGTGGGATCAATGGTCAAGATGGTCCATCTAGAATAACATACATTCAAGACAATCCTTCTGATTCAATATCATCTAGAACCCTCTTAAGAACACTTCACCTAGATCAACCTCAAAGAATCAACTATCAACGAGTCATCCGTATGAAGATAACACTTCACCTAGATCAACCTCAAAGAATCAACTATCAACGAGTCATCCGTATGAAGATCAACATCATTAAAATCCTCACCCATTACAATCATCTATATCCACGTCCACTACATCCGTCCATGAACTACGAAAAACACAGTCACTACGAAACTTCATTTTCGTACAATTCGTACCAATTTTTCGCAACCATGAGAACCAAAACCGTTGGTGGCAAACGCCGTTCGTTAATCAACCCTAATTCACCATTCGTTCTTTCAACACTGGAAACCGATGAGGAAGAAGATCCAAATCCAATTTACCGAAAATCAACTGTTTGGAATGAATGGGTTATCTTCAAGCAAGATAAAACGAAGAAAGCTTCGGACTTTAAGGGGAAATCGACGTATAATACGAATCCTAGTAGGAATAAGCCGTGTGTGTATTGCATTGGTCATGAAGATGAATGTAGTGAGGAGATTTTTAGGGTTCCGTTTGATGAACCGAATTGGAAGATTAGGAGTCCGAATCCGGCGGTTTTGAGGAGTTTGGATGATGGGTTTGTGTTGGATGGTGGTGAGGTTTTGGATGGGTTTGGGATTCATGATGTTGTCATTGAGAGTCCTGTGCATTCGGAGCAGTTGTTGGATTTGACGCCGAAGGATGTTGGCGAGGTTTTTGTTGCTTTTAGTAATAGGATCAGAGAATTGGTTCATCTTGAGTCTATCAAATATGTTCAGGTGTTTAAAAACCATGGTGAAAAAGCTGGTGCAGCAATGAGTCATTCTCATAGTCAAATCCTGGGCTTGCCAATTGTTCCAAACAATACAGGGAAGTGCTGTATTTGTGACATTCAACTTGAGGATCTTTTGATTGATTCATCTTCCTACTTCTTTTCATTGGTTCCGTTTGCTGCTTCATTTCCTTTTGAGATATGGGTTGTTCCCCGGTATCACTCTGCACACTTCCATGAATTGGATGATGAAATGGCACTTGATCTTGGAGGTTTGATGAGAACCACTCTTAGAAAGATGTCTTTTCAATTGAACAATCCGCCATACAACTTTATGATCCACACTAGTCCATTGCGTGGTGATGGGTCAGAGCTGGCATACAGTCATTGGTTTATACAGATAATACCTCAGCTGATTCCGACAACTGGTTTTGAGCTTGGAACTGGGTCTCACATCAATCCTGTTTTGCCTGAGGATGCTGCAAAGATTCTAAGAGAAGTGATTGTTCCTGTGTTTGCACATGAAAGGCGCATGGTGGGATTTTTACCTCCAACTAAGATTGTGGATTATAGTGATGCATTCACCACCAAAGAGGTGTTTCCTACTCGAGAGTATCTGCTGAATTGGGCACGAGCCATTGGGAGAGAGCACGGGTTTACTGTTATCATTCAAAGATCAGACAATGGCGGATTGAAGAAGAGGATAGGAAGGAAAACAACTGTGATTTTGGGTTGCGAAAGAAGTGGAAAATATAGACAATACAAGGATGCATTAGCTCGCAAGACTGGAACAAAGAAATGTGGGTGTCCATTCCGACTGAGAGGAAGACCTGTTAGAAATGGTGATGGATGGAAAGTGAACGTAGTGTGTGGATTTCACAACCATGAAGTAATTGAAACTGCGATCGGGAGCACATATGCCGGTCGGCTAAGTGGCGAAGAGAAGTCTTTGGTCGATGATCTGACAAGAAGCAATTACAAACCGAAAGACATATTACAGACATTGAAAGAACGTAATGAAGAGAATCTCACTTCTATCAAGCAGATTTATAATTTGCGCCAACAGCTAAAACGTTCTAGATTAGAATTAGAAATGGAAAATTCGGCATAG

Protein sequence

>Msa0980940

MFWSKFMKSRSKHDSHHEVKQNKQHLLKFGGINGQDGPSRITYIQDNPSDSISSRTLLRTLHLDQPQRINYQRVIRMKITLHLDQPQRINYQRVIRMKINIIKILTHYNHLYPRPLHPSMNYEKHSHYETSFSYNSYQFFATMRTKTVGGKRRSLINPNSPFVLSTLETDEEEDPNPIYRKSTVWNEWVIFKQDKTKKASDFKGKSTYNTNPSRNKPCVYCIGHEDECSEEIFRVPFDEPNWKIRSPNPAVLRSLDDGFVLDGGEVLDGFGIHDVVIESPVHSEQLLDLTPKDVGEVFVAFSNRIRELVHLESIKYVQVFKNHGEKAGAAMSHSHSQILGLPIVPNNTGKCCICDIQLEDLLIDSSSYFFSLVPFAASFPFEIWVVPRYHSAHFHELDDEMALDLGGLMRTTLRKMSFQLNNPPYNFMIHTSPLRGDGSELAYSHWFIQIIPQLIPTTGFELGTGSHINPVLPEDAAKILREVIVPVFAHERRMVGFLPPTKIVDYSDAFTTKEVFPTREYLLNWARAIGREHGFTVIIQRSDNGGLKKRIGRKTTVILGCERSGKYRQYKDALARKTGTKKCGCPFRLRGRPVRNGDGWKVNVVCGFHNHEVIETAIGSTYAGRLSGEEKSLVDDLTRSNYKPKDILQTLKERNEENLTSIKQIYNLRQQLKRSRLELEMENSA*