Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158350 | AFK40109.1 | 87.500 | 136 | 7 | 1 | 1 | 126 | 1 | 136 | 5.25e-77 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158350 | sp|P52914|NTPA_PEA | 71.545 | 123 | 24 | 2 | 14 | 126 | 4 | 125 | 4.76e-52 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158350 | I3SIL7 | 87.500 | 136 | 7 | 1 | 1 | 126 | 1 | 136 | 2.51e-77 | 239 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0664850 | Msa1158350 | 0.804633 | 1.966830e-49 | -8.615850e-47 |
| Msa1025830 | Msa1158350 | 0.805226 | 1.478478e-49 | -8.615850e-47 |
| Msa1041560 | Msa1158350 | 0.879284 | 1.412854e-69 | -8.615850e-47 |
| Msa1070490 | Msa1158350 | 0.904662 | 9.705995e-80 | -8.615850e-47 |
| Msa1101140 | Msa1158350 | 0.895728 | 7.269881e-76 | -8.615850e-47 |
| Msa1101620 | Msa1158350 | 0.812301 | 4.542094e-51 | -8.615850e-47 |
| Msa0243890 | Msa1158350 | 0.803952 | 2.726165e-49 | -8.615850e-47 |
| Msa1158350 | Msa1166460 | 0.884010 | 2.761083e-71 | -8.615850e-47 |
| Msa1158350 | Msa1338520 | 0.907145 | 6.952704e-81 | -8.615850e-47 |
| Msa1158350 | Msa1428310 | 0.800816 | 1.207085e-48 | -8.615850e-47 |
| Msa1158350 | Msa1438250 | 0.825190 | 5.364758e-54 | -8.615850e-47 |
| Msa0483650 | Msa1158350 | 0.824851 | 6.452740e-54 | -8.615850e-47 |
| Msa0868020 | Msa1158350 | 0.809367 | 1.960042e-50 | -8.615850e-47 |
| Msa0883060 | Msa1158350 | 0.805171 | 1.518245e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158350 | MtrunA17_Chr7g0252891 | 87.500 | 136 | 7 | 1 | 1 | 126 | 12 | 147 | 1.36e-79 | 243 |
| Msa1158350 | MtrunA17_Chr4g0015031 | 87.500 | 136 | 7 | 1 | 1 | 126 | 1 | 136 | 7.74e-78 | 238 |
| Msa1158350 | MtrunA17_Chr7g0252921 | 73.984 | 123 | 21 | 2 | 14 | 126 | 4 | 125 | 2.21e-56 | 182 |
| Msa1158350 | MtrunA17_Chr7g0252911 | 70.536 | 112 | 22 | 2 | 25 | 126 | 16 | 126 | 2.32e-49 | 164 |
| Msa1158350 | MtrunA17_Chr7g0252881 | 71.429 | 112 | 21 | 2 | 25 | 126 | 16 | 126 | 3.27e-47 | 158 |
| Msa1158350 | MtrunA17_Chr7g0252861 | 55.000 | 120 | 43 | 2 | 17 | 126 | 31 | 149 | 3.00e-37 | 132 |
| Msa1158350 | MtrunA17_Chr6g0461671 | 51.754 | 114 | 44 | 2 | 23 | 126 | 50 | 162 | 5.45e-30 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158350 | AT5G18280.1 | 48.214 | 112 | 48 | 1 | 25 | 126 | 41 | 152 | 5.42e-26 | 102 |
| Msa1158350 | AT3G04080.1 | 55.422 | 83 | 27 | 1 | 54 | 126 | 69 | 151 | 1.40e-24 | 98.2 |
| Msa1158350 | AT1G14250.1 | 37.037 | 81 | 39 | 1 | 55 | 123 | 71 | 151 | 1.82e-11 | 61.2 |
| Msa1158350 | AT1G14230.1 | 33.981 | 103 | 52 | 2 | 33 | 123 | 63 | 161 | 2.08e-11 | 60.8 |
Find 38 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGAAATTGTTTCTTGTTT+TGG | 0.150484 | 7_4:-47641829 | None:intergenic |
| ACATGTTGTTTCCAAGAAAT+TGG | 0.163680 | 7_4:-47641783 | None:intergenic |
| ATTTCTTACTCCCAATTTCT+TGG | 0.220318 | 7_4:+47641772 | Msa1158350:CDS |
| AAAATTAGTTAGGAACATTT+AGG | 0.247359 | 7_4:-47642714 | None:intergenic |
| CATAAAGTTCATCATATTCT+TGG | 0.284290 | 7_4:-47641713 | None:intergenic |
| TTTCTCCATATGTAAGAGTT+AGG | 0.302396 | 7_4:+47642513 | Msa1158350:three_prime_UTR |
| CCAAGTCTAACGGGTGTCTT+GGG | 0.304787 | 7_4:-47642371 | None:intergenic |
| GTCTTGGGGCGTTGGTCCTC+AGG | 0.350518 | 7_4:-47642356 | None:intergenic |
| ATCGTTGATCAATCTATTGT+TGG | 0.350731 | 7_4:+47642582 | Msa1158350:three_prime_UTR |
| ATTATAAACGAAAATTAGTT+AGG | 0.357213 | 7_4:-47642724 | None:intergenic |
| CCCAAGTCTAACGGGTGTCT+TGG | 0.371819 | 7_4:-47642372 | None:intergenic |
| AATAGATTGATCAACGATAA+AGG | 0.374549 | 7_4:-47642577 | None:intergenic |
| CATGTTGTTTCCAAGAAATT+GGG | 0.378180 | 7_4:-47641782 | None:intergenic |
| AAGAAATTGGGAGTAAGAAA+TGG | 0.403150 | 7_4:-47641770 | None:intergenic |
| ATCAAACACAACAGCATAAG+AGG | 0.406879 | 7_4:-47641848 | None:intergenic |
| CCCAAGACACCCGTTAGACT+TGG | 0.424438 | 7_4:+47642371 | Msa1158350:CDS |
| TATGCTGTTGTGTTTGATGC+TGG | 0.431064 | 7_4:+47641853 | Msa1158350:CDS |
| ATCCGCGTATGCACTCAAAC+CGG | 0.434433 | 7_4:-47642273 | None:intergenic |
| CAATTCCTAACTCTTACATA+TGG | 0.439155 | 7_4:-47642518 | None:intergenic |
| AAACTTACCCCAAGTCTAAC+GGG | 0.466778 | 7_4:-47642380 | None:intergenic |
| TAACGGGTGTCTTGGGGCGT+TGG | 0.467981 | 7_4:-47642364 | None:intergenic |
| GTGTTTGATGCTGGTAGCAC+TGG | 0.488893 | 7_4:+47641862 | Msa1158350:CDS |
| CTTTCTGCCTGCTCTAAAAG+TGG | 0.495493 | 7_4:-47642326 | None:intergenic |
| ATTAGTCGAGGTTAAATGAT+GGG | 0.503006 | 7_4:-47642448 | None:intergenic |
| CCAAGACACCCGTTAGACTT+GGG | 0.518452 | 7_4:+47642372 | Msa1158350:CDS |
| TCCGCGTATGCACTCAAACC+GGG | 0.534325 | 7_4:-47642272 | None:intergenic |
| TATTAGTCGAGGTTAAATGA+TGG | 0.537559 | 7_4:-47642449 | None:intergenic |
| AAAACTTACCCCAAGTCTAA+CGG | 0.558815 | 7_4:-47642381 | None:intergenic |
| TTTGATCAAAATGGTAAACA+TGG | 0.580756 | 7_4:-47641894 | None:intergenic |
| TTTAGAGCAGGCAGAAAGTG+TGG | 0.588867 | 7_4:+47642331 | Msa1158350:CDS |
| GGCAGAAAGTGTGGTTCCTG+AGG | 0.596755 | 7_4:+47642340 | Msa1158350:CDS |
| AATTGGGAGTAAGAAATGGA+AGG | 0.610820 | 7_4:-47641766 | None:intergenic |
| CAAGACACCCGTTAGACTTG+GGG | 0.616733 | 7_4:+47642373 | Msa1158350:CDS |
| CAAAATGGTAAACATGGACA+CGG | 0.617625 | 7_4:-47641888 | None:intergenic |
| TTAGTCGAGGTTAAATGATG+GGG | 0.618302 | 7_4:-47642447 | None:intergenic |
| CAAGTCTAACGGGTGTCTTG+GGG | 0.619279 | 7_4:-47642370 | None:intergenic |
| ACCCGGTTTGAGTGCATACG+CGG | 0.634041 | 7_4:+47642271 | Msa1158350:CDS |
| CCTTGTAAAAGATTGAACCG+TGG | 0.709941 | 7_4:+47642627 | Msa1158350:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGCATTTAAAAAAAATAA+TGG | + | chr7_4:47642027-47642046 | Msa1158350:intron | 10.0% |
| !! | TATGCATTTAAAAAAAATAA+TGG | + | chr7_4:47642027-47642046 | Msa1158350:intron | 10.0% |
| !!! | ATTTAGGATATAAAGAAAAA+CGG | - | chr7_4:47642701-47642720 | None:intergenic | 15.0% |
| !! | ATTATAAACGAAAATTAGTT+AGG | - | chr7_4:47642727-47642746 | None:intergenic | 15.0% |
| !!! | ATTTAGGATATAAAGAAAAA+CGG | - | chr7_4:47642701-47642720 | None:intergenic | 15.0% |
| !! | ATTATAAACGAAAATTAGTT+AGG | - | chr7_4:47642727-47642746 | None:intergenic | 15.0% |
| !!! | GATTTAAGTTTTGATCAAAA+TGG | - | chr7_4:47641906-47641925 | None:intergenic | 20.0% |
| !!! | TGATGTTGAGTTTTATAATA+AGG | + | chr7_4:47641942-47641961 | Msa1158350:intron | 20.0% |
| !! | AGTAAAACATAGTCTTTAAT+AGG | + | chr7_4:47642187-47642206 | Msa1158350:intron | 20.0% |
| !! | AAAATTAGTTAGGAACATTT+AGG | - | chr7_4:47642717-47642736 | None:intergenic | 20.0% |
| !!! | GATTTAAGTTTTGATCAAAA+TGG | - | chr7_4:47641906-47641925 | None:intergenic | 20.0% |
| !!! | TGATGTTGAGTTTTATAATA+AGG | + | chr7_4:47641942-47641961 | Msa1158350:intron | 20.0% |
| !! | AGTAAAACATAGTCTTTAAT+AGG | + | chr7_4:47642187-47642206 | Msa1158350:intron | 20.0% |
| !! | AAAATTAGTTAGGAACATTT+AGG | - | chr7_4:47642717-47642736 | None:intergenic | 20.0% |
| ! | CATAAAGTTCATCATATTCT+TGG | - | chr7_4:47641716-47641735 | None:intergenic | 25.0% |
| !!! | AGGAAATTGTTTCTTGTTTT+GGG | - | chr7_4:47641831-47641850 | None:intergenic | 25.0% |
| ! | TTTGATCAAAATGGTAAACA+TGG | - | chr7_4:47641897-47641916 | None:intergenic | 25.0% |
| ! | AACTTAAATCTTCTTCATGT+TGG | + | chr7_4:47641916-47641935 | Msa1158350:intron | 25.0% |
| ! | AAAGAATATGGTGAAGTTAA+AGG | - | chr7_4:47642241-47642260 | None:intergenic | 25.0% |
| ! | GAGAAAAATTCACTTTATGT+GGG | - | chr7_4:47642481-47642500 | None:intergenic | 25.0% |
| ! | AGAGAAAAATTCACTTTATG+TGG | - | chr7_4:47642482-47642501 | None:intergenic | 25.0% |
| ! | AATAGATTGATCAACGATAA+AGG | - | chr7_4:47642580-47642599 | None:intergenic | 25.0% |
| ! | CATAAAGTTCATCATATTCT+TGG | - | chr7_4:47641716-47641735 | None:intergenic | 25.0% |
| !!! | AGGAAATTGTTTCTTGTTTT+GGG | - | chr7_4:47641831-47641850 | None:intergenic | 25.0% |
| ! | TTTGATCAAAATGGTAAACA+TGG | - | chr7_4:47641897-47641916 | None:intergenic | 25.0% |
| ! | AACTTAAATCTTCTTCATGT+TGG | + | chr7_4:47641916-47641935 | Msa1158350:intron | 25.0% |
| ! | AAAGAATATGGTGAAGTTAA+AGG | - | chr7_4:47642241-47642260 | None:intergenic | 25.0% |
| ! | GAGAAAAATTCACTTTATGT+GGG | - | chr7_4:47642481-47642500 | None:intergenic | 25.0% |
| ! | AGAGAAAAATTCACTTTATG+TGG | - | chr7_4:47642482-47642501 | None:intergenic | 25.0% |
| ! | AATAGATTGATCAACGATAA+AGG | - | chr7_4:47642580-47642599 | None:intergenic | 25.0% |
| AAGAAATTGGGAGTAAGAAA+TGG | - | chr7_4:47641773-47641792 | None:intergenic | 30.0% | |
| ATTTCTTACTCCCAATTTCT+TGG | + | chr7_4:47641772-47641791 | Msa1158350:CDS | 30.0% | |
| !! | CATGTTGTTTCCAAGAAATT+GGG | - | chr7_4:47641785-47641804 | None:intergenic | 30.0% |
| !! | ACATGTTGTTTCCAAGAAAT+TGG | - | chr7_4:47641786-47641805 | None:intergenic | 30.0% |
| !!! | CTTGTTTTGGGAATATCTTA+CGG | - | chr7_4:47641819-47641838 | None:intergenic | 30.0% |
| !! | GAGGAAATTGTTTCTTGTTT+TGG | - | chr7_4:47641832-47641851 | None:intergenic | 30.0% |
| ! | AGGTGACAATAACATCTTTT+TGG | + | chr7_4:47641962-47641981 | Msa1158350:intron | 30.0% |
| CAAACAATTCTTCACTTCAA+TGG | + | chr7_4:47642090-47642109 | Msa1158350:intron | 30.0% | |
| GTGTAGTCTACAAAAGAATA+TGG | - | chr7_4:47642253-47642272 | None:intergenic | 30.0% | |
| ATTAGTCGAGGTTAAATGAT+GGG | - | chr7_4:47642451-47642470 | None:intergenic | 30.0% | |
| TATTAGTCGAGGTTAAATGA+TGG | - | chr7_4:47642452-47642471 | None:intergenic | 30.0% | |
| TTTCTCCATATGTAAGAGTT+AGG | + | chr7_4:47642513-47642532 | Msa1158350:three_prime_UTR | 30.0% | |
| CAATTCCTAACTCTTACATA+TGG | - | chr7_4:47642521-47642540 | None:intergenic | 30.0% | |
| ATCGTTGATCAATCTATTGT+TGG | + | chr7_4:47642582-47642601 | Msa1158350:three_prime_UTR | 30.0% | |
| AAGAAATTGGGAGTAAGAAA+TGG | - | chr7_4:47641773-47641792 | None:intergenic | 30.0% | |
| ATTTCTTACTCCCAATTTCT+TGG | + | chr7_4:47641772-47641791 | Msa1158350:CDS | 30.0% | |
| !! | CATGTTGTTTCCAAGAAATT+GGG | - | chr7_4:47641785-47641804 | None:intergenic | 30.0% |
| !! | ACATGTTGTTTCCAAGAAAT+TGG | - | chr7_4:47641786-47641805 | None:intergenic | 30.0% |
| !!! | CTTGTTTTGGGAATATCTTA+CGG | - | chr7_4:47641819-47641838 | None:intergenic | 30.0% |
| !! | GAGGAAATTGTTTCTTGTTT+TGG | - | chr7_4:47641832-47641851 | None:intergenic | 30.0% |
| ! | AGGTGACAATAACATCTTTT+TGG | + | chr7_4:47641962-47641981 | Msa1158350:intron | 30.0% |
| CAAACAATTCTTCACTTCAA+TGG | + | chr7_4:47642090-47642109 | Msa1158350:intron | 30.0% | |
| GTGTAGTCTACAAAAGAATA+TGG | - | chr7_4:47642253-47642272 | None:intergenic | 30.0% | |
| ATTAGTCGAGGTTAAATGAT+GGG | - | chr7_4:47642451-47642470 | None:intergenic | 30.0% | |
| TATTAGTCGAGGTTAAATGA+TGG | - | chr7_4:47642452-47642471 | None:intergenic | 30.0% | |
| TTTCTCCATATGTAAGAGTT+AGG | + | chr7_4:47642513-47642532 | Msa1158350:three_prime_UTR | 30.0% | |
| CAATTCCTAACTCTTACATA+TGG | - | chr7_4:47642521-47642540 | None:intergenic | 30.0% | |
| ATCGTTGATCAATCTATTGT+TGG | + | chr7_4:47642582-47642601 | Msa1158350:three_prime_UTR | 30.0% | |
| AATTGGGAGTAAGAAATGGA+AGG | - | chr7_4:47641769-47641788 | None:intergenic | 35.0% | |
| ATCAAACACAACAGCATAAG+AGG | - | chr7_4:47641851-47641870 | None:intergenic | 35.0% | |
| CAAAATGGTAAACATGGACA+CGG | - | chr7_4:47641891-47641910 | None:intergenic | 35.0% | |
| ! | ATTCTTTTGTAGACTACACC+CGG | + | chr7_4:47642254-47642273 | Msa1158350:intron | 35.0% |
| ! | AAAGATTTTGCAGCTTCTTC+TGG | - | chr7_4:47642302-47642321 | None:intergenic | 35.0% |
| !!! | TTTGATTCCACTTTTAGAGC+AGG | + | chr7_4:47642319-47642338 | Msa1158350:CDS | 35.0% |
| AAAACTTACCCCAAGTCTAA+CGG | - | chr7_4:47642384-47642403 | None:intergenic | 35.0% | |
| TTAGTCGAGGTTAAATGATG+GGG | - | chr7_4:47642450-47642469 | None:intergenic | 35.0% | |
| GTGGGTAAAAATATTAGTCG+AGG | - | chr7_4:47642463-47642482 | None:intergenic | 35.0% | |
| !!! | GTCTCTACTTTTTTTGTCCA+CGG | - | chr7_4:47642647-47642666 | None:intergenic | 35.0% |
| AATTGGGAGTAAGAAATGGA+AGG | - | chr7_4:47641769-47641788 | None:intergenic | 35.0% | |
| ATCAAACACAACAGCATAAG+AGG | - | chr7_4:47641851-47641870 | None:intergenic | 35.0% | |
| CAAAATGGTAAACATGGACA+CGG | - | chr7_4:47641891-47641910 | None:intergenic | 35.0% | |
| ! | ATTCTTTTGTAGACTACACC+CGG | + | chr7_4:47642254-47642273 | Msa1158350:intron | 35.0% |
| ! | AAAGATTTTGCAGCTTCTTC+TGG | - | chr7_4:47642302-47642321 | None:intergenic | 35.0% |
| !!! | TTTGATTCCACTTTTAGAGC+AGG | + | chr7_4:47642319-47642338 | Msa1158350:CDS | 35.0% |
| AAAACTTACCCCAAGTCTAA+CGG | - | chr7_4:47642384-47642403 | None:intergenic | 35.0% | |
| TTAGTCGAGGTTAAATGATG+GGG | - | chr7_4:47642450-47642469 | None:intergenic | 35.0% | |
| GTGGGTAAAAATATTAGTCG+AGG | - | chr7_4:47642463-47642482 | None:intergenic | 35.0% | |
| !!! | GTCTCTACTTTTTTTGTCCA+CGG | - | chr7_4:47642647-47642666 | None:intergenic | 35.0% |
| TATGCTGTTGTGTTTGATGC+TGG | + | chr7_4:47641853-47641872 | Msa1158350:CDS | 40.0% | |
| AAACTTACCCCAAGTCTAAC+GGG | - | chr7_4:47642383-47642402 | None:intergenic | 40.0% | |
| ! | CCACGGTTCAATCTTTTACA+AGG | - | chr7_4:47642630-47642649 | None:intergenic | 40.0% |
| CCTTGTAAAAGATTGAACCG+TGG | + | chr7_4:47642627-47642646 | Msa1158350:three_prime_UTR | 40.0% | |
| TATGCTGTTGTGTTTGATGC+TGG | + | chr7_4:47641853-47641872 | Msa1158350:CDS | 40.0% | |
| AAACTTACCCCAAGTCTAAC+GGG | - | chr7_4:47642383-47642402 | None:intergenic | 40.0% | |
| ! | CCACGGTTCAATCTTTTACA+AGG | - | chr7_4:47642630-47642649 | None:intergenic | 40.0% |
| CCTTGTAAAAGATTGAACCG+TGG | + | chr7_4:47642627-47642646 | Msa1158350:three_prime_UTR | 40.0% | |
| !! | CTTTCTGCCTGCTCTAAAAG+TGG | - | chr7_4:47642329-47642348 | None:intergenic | 45.0% |
| ! | TTTAGAGCAGGCAGAAAGTG+TGG | + | chr7_4:47642331-47642350 | Msa1158350:CDS | 45.0% |
| !! | CTTTCTGCCTGCTCTAAAAG+TGG | - | chr7_4:47642329-47642348 | None:intergenic | 45.0% |
| ! | TTTAGAGCAGGCAGAAAGTG+TGG | + | chr7_4:47642331-47642350 | Msa1158350:CDS | 45.0% |
| GTGTTTGATGCTGGTAGCAC+TGG | + | chr7_4:47641862-47641881 | Msa1158350:CDS | 50.0% | |
| ATCCGCGTATGCACTCAAAC+CGG | - | chr7_4:47642276-47642295 | None:intergenic | 50.0% | |
| ! | CAAGTCTAACGGGTGTCTTG+GGG | - | chr7_4:47642373-47642392 | None:intergenic | 50.0% |
| ! | CCAAGTCTAACGGGTGTCTT+GGG | - | chr7_4:47642374-47642393 | None:intergenic | 50.0% |
| CCAAGACACCCGTTAGACTT+GGG | + | chr7_4:47642372-47642391 | Msa1158350:CDS | 50.0% | |
| CAAGACACCCGTTAGACTTG+GGG | + | chr7_4:47642373-47642392 | Msa1158350:CDS | 50.0% | |
| GTGTTTGATGCTGGTAGCAC+TGG | + | chr7_4:47641862-47641881 | Msa1158350:CDS | 50.0% | |
| ATCCGCGTATGCACTCAAAC+CGG | - | chr7_4:47642276-47642295 | None:intergenic | 50.0% | |
| ! | CAAGTCTAACGGGTGTCTTG+GGG | - | chr7_4:47642373-47642392 | None:intergenic | 50.0% |
| ! | CCAAGTCTAACGGGTGTCTT+GGG | - | chr7_4:47642374-47642393 | None:intergenic | 50.0% |
| CCAAGACACCCGTTAGACTT+GGG | + | chr7_4:47642372-47642391 | Msa1158350:CDS | 50.0% | |
| CAAGACACCCGTTAGACTTG+GGG | + | chr7_4:47642373-47642392 | Msa1158350:CDS | 50.0% | |
| ! | ACCCGGTTTGAGTGCATACG+CGG | + | chr7_4:47642271-47642290 | Msa1158350:CDS | 55.0% |
| TCCGCGTATGCACTCAAACC+GGG | - | chr7_4:47642275-47642294 | None:intergenic | 55.0% | |
| ! | GGCAGAAAGTGTGGTTCCTG+AGG | + | chr7_4:47642340-47642359 | Msa1158350:CDS | 55.0% |
| CCCAAGACACCCGTTAGACT+TGG | + | chr7_4:47642371-47642390 | Msa1158350:CDS | 55.0% | |
| ! | CCCAAGTCTAACGGGTGTCT+TGG | - | chr7_4:47642375-47642394 | None:intergenic | 55.0% |
| ! | ACCCGGTTTGAGTGCATACG+CGG | + | chr7_4:47642271-47642290 | Msa1158350:CDS | 55.0% |
| TCCGCGTATGCACTCAAACC+GGG | - | chr7_4:47642275-47642294 | None:intergenic | 55.0% | |
| ! | GGCAGAAAGTGTGGTTCCTG+AGG | + | chr7_4:47642340-47642359 | Msa1158350:CDS | 55.0% |
| CCCAAGACACCCGTTAGACT+TGG | + | chr7_4:47642371-47642390 | Msa1158350:CDS | 55.0% | |
| ! | CCCAAGTCTAACGGGTGTCT+TGG | - | chr7_4:47642375-47642394 | None:intergenic | 55.0% |
| ! | TAACGGGTGTCTTGGGGCGT+TGG | - | chr7_4:47642367-47642386 | None:intergenic | 60.0% |
| ! | TAACGGGTGTCTTGGGGCGT+TGG | - | chr7_4:47642367-47642386 | None:intergenic | 60.0% |
| !! | GTCTTGGGGCGTTGGTCCTC+AGG | - | chr7_4:47642359-47642378 | None:intergenic | 65.0% |
| !! | GTCTTGGGGCGTTGGTCCTC+AGG | - | chr7_4:47642359-47642378 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 47641691 | 47642772 | 47641691 | ID=Msa1158350;Name=Msa1158350 |
| chr7_4 | mRNA | 47641691 | 47642772 | 47641691 | ID=Msa1158350-mRNA-1;Parent=Msa1158350;Name=Msa1158350-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0.5|1|0|0.5|2|303|148 |
| chr7_4 | exon | 47641691 | 47641933 | 47641691 | ID=Msa1158350-mRNA-1:exon:12735;Parent=Msa1158350-mRNA-1 |
| chr7_4 | exon | 47642266 | 47642772 | 47642266 | ID=Msa1158350-mRNA-1:exon:12736;Parent=Msa1158350-mRNA-1 |
| chr7_4 | CDS | 47641691 | 47641933 | 47641691 | ID=Msa1158350-mRNA-1:cds;Parent=Msa1158350-mRNA-1 |
| chr7_4 | CDS | 47642266 | 47642469 | 47642266 | ID=Msa1158350-mRNA-1:cds;Parent=Msa1158350-mRNA-1 |
| chr7_4 | three_prime_UTR | 47642470 | 47642772 | 47642470 | ID=Msa1158350-mRNA-1:three_prime_utr;Parent=Msa1158350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
