Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664850 | XP_039689622.1 | 94.894 | 568 | 27 | 2 | 1 | 566 | 1 | 568 | 0.0 | 1055 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664850 | sp|P0C897|Y3264_ARATH | 45.714 | 525 | 241 | 10 | 9 | 525 | 9 | 497 | 3.50e-151 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664850 | A0A396HYS8 | 94.894 | 568 | 27 | 2 | 1 | 566 | 1 | 568 | 0.0 | 1055 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012060 | Msa0664850 | 0.805068 | 1.595248e-49 | -8.615850e-47 |
| Msa0029880 | Msa0664850 | 0.831680 | 1.454817e-55 | -8.615850e-47 |
| Msa0029890 | Msa0664850 | 0.816834 | 4.507699e-52 | -8.615850e-47 |
| Msa0029900 | Msa0664850 | 0.801869 | 7.346937e-49 | -8.615850e-47 |
| Msa0077130 | Msa0664850 | 0.802828 | 4.660843e-49 | -8.615850e-47 |
| Msa0077140 | Msa0664850 | 0.811377 | 7.216564e-51 | -8.615850e-47 |
| Msa0101810 | Msa0664850 | -0.802271 | 6.071735e-49 | -8.615850e-47 |
| Msa0626720 | Msa0664850 | 0.829970 | 3.821114e-55 | -8.615850e-47 |
| Msa0664850 | Msa0688070 | 0.810107 | 1.358545e-50 | -8.615850e-47 |
| Msa0664850 | Msa0696740 | 0.808810 | 2.579488e-50 | -8.615850e-47 |
| Msa0664850 | Msa0696770 | 0.812296 | 4.552898e-51 | -8.615850e-47 |
| Msa0664850 | Msa0730270 | 0.815084 | 1.107863e-51 | -8.615850e-47 |
| Msa0664850 | Msa0754680 | 0.815162 | 1.064972e-51 | -8.615850e-47 |
| Msa0664850 | Msa0797350 | 0.829921 | 3.926666e-55 | -8.615850e-47 |
| Msa0664850 | Msa0829620 | 0.812142 | 4.920184e-51 | -8.615850e-47 |
| Msa0664850 | Msa0843400 | 0.822832 | 1.917930e-53 | -8.615850e-47 |
| Msa0664850 | Msa0867890 | 0.821369 | 4.188418e-53 | -8.615850e-47 |
| Msa0664850 | Msa0868020 | 0.964618 | 1.487947e-123 | -8.615850e-47 |
| Msa0664850 | Msa0923010 | 0.809337 | 1.988609e-50 | -8.615850e-47 |
| Msa0664850 | Msa0964130 | 0.824546 | 7.611139e-54 | -8.615850e-47 |
| Msa0664850 | Msa1001200 | 0.804578 | 2.019344e-49 | -8.615850e-47 |
| Msa0664850 | Msa1026500 | 0.804335 | 2.270021e-49 | -8.615850e-47 |
| Msa0664850 | Msa1073070 | -0.805280 | 1.440556e-49 | -8.615850e-47 |
| Msa0664850 | Msa1080160 | 0.817862 | 2.646120e-52 | -8.615850e-47 |
| Msa0664850 | Msa1082500 | 0.821625 | 3.655418e-53 | -8.615850e-47 |
| Msa0664850 | Msa1098560 | 0.814062 | 1.864835e-51 | -8.615850e-47 |
| Msa0664850 | Msa1158350 | 0.804633 | 1.966830e-49 | -8.615850e-47 |
| Msa0664850 | Msa1167220 | 0.804070 | 2.576461e-49 | -8.615850e-47 |
| Msa0664850 | Msa1176050 | 0.802901 | 4.502200e-49 | -8.615850e-47 |
| Msa0664850 | Msa1214880 | 0.812939 | 3.292927e-51 | -8.615850e-47 |
| Msa0664850 | Msa1224480 | 0.810488 | 1.124302e-50 | -8.615850e-47 |
| Msa0664850 | Msa1267610 | 0.814260 | 1.686469e-51 | -8.615850e-47 |
| Msa0664850 | Msa1278840 | 0.808578 | 2.891393e-50 | -8.615850e-47 |
| Msa0664850 | Msa1307210 | 0.807343 | 5.295488e-50 | -8.615850e-47 |
| Msa0664850 | Msa1338520 | 0.801201 | 1.007029e-48 | -8.615850e-47 |
| Msa0664850 | Msa1341570 | 0.835837 | 1.330175e-56 | -8.615850e-47 |
| Msa0664850 | Msa1381940 | 0.812611 | 3.886067e-51 | -8.615850e-47 |
| Msa0664850 | Msa1453250 | 0.813391 | 2.621028e-51 | -8.615850e-47 |
| Msa0664850 | Msa1457430 | 0.809282 | 2.044149e-50 | -8.615850e-47 |
| Msa0124110 | Msa0664850 | 0.801080 | 1.065759e-48 | -8.615850e-47 |
| Msa0125090 | Msa0664850 | 0.828502 | 8.676390e-55 | -8.615850e-47 |
| Msa0125100 | Msa0664850 | 0.837357 | 5.453693e-57 | -8.615850e-47 |
| Msa0141230 | Msa0664850 | 0.810524 | 1.104340e-50 | -8.615850e-47 |
| Msa0142200 | Msa0664850 | 0.818335 | 2.068484e-52 | -8.615850e-47 |
| Msa0165510 | Msa0664850 | 0.819832 | 9.441566e-53 | -8.615850e-47 |
| Msa0169860 | Msa0664850 | 0.836851 | 7.345242e-57 | -8.615850e-47 |
| Msa0169870 | Msa0664850 | 0.806124 | 9.579802e-50 | -8.615850e-47 |
| Msa0170090 | Msa0664850 | 0.831878 | 1.300131e-55 | -8.615850e-47 |
| Msa0191250 | Msa0664850 | 0.814588 | 1.427325e-51 | -8.615850e-47 |
| Msa0221060 | Msa0664850 | 0.803455 | 3.457954e-49 | -8.615850e-47 |
| Msa0227470 | Msa0664850 | 0.819708 | 1.007666e-52 | -8.615850e-47 |
| Msa0448550 | Msa0664850 | -0.807411 | 5.122664e-50 | -8.615850e-47 |
| Msa0452920 | Msa0664850 | 0.826824 | 2.194976e-54 | -8.615850e-47 |
| Msa0243100 | Msa0664850 | 0.806092 | 9.731153e-50 | -8.615850e-47 |
| Msa0243890 | Msa0664850 | 0.800119 | 1.673224e-48 | -8.615850e-47 |
| Msa0272730 | Msa0664850 | 0.813637 | 2.313665e-51 | -8.615850e-47 |
| Msa0276920 | Msa0664850 | 0.800083 | 1.701761e-48 | -8.615850e-47 |
| Msa0282590 | Msa0664850 | 0.807039 | 6.142144e-50 | -8.615850e-47 |
| Msa0334350 | Msa0664850 | 0.811867 | 5.648575e-51 | -8.615850e-47 |
| Msa0347650 | Msa0664850 | 0.813422 | 2.580664e-51 | -8.615850e-47 |
| Msa0356890 | Msa0664850 | -0.816171 | 6.344534e-52 | -8.615850e-47 |
| Msa0483650 | Msa0664850 | 0.927810 | 6.990321e-92 | -8.615850e-47 |
| Msa0483660 | Msa0664850 | 0.883705 | 3.579003e-71 | -8.615850e-47 |
| Msa0484780 | Msa0664850 | 0.807921 | 3.991802e-50 | -8.615850e-47 |
| Msa0512900 | Msa0664850 | 0.802697 | 4.961496e-49 | -8.615850e-47 |
| Msa0576130 | Msa0664850 | 0.800395 | 1.470657e-48 | -8.615850e-47 |
| Msa0586910 | Msa0664850 | 0.946655 | 3.049076e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664850 | MtrunA17_Chr4g0002911 | 94.894 | 568 | 27 | 2 | 1 | 566 | 1 | 568 | 0.0 | 1055 |
| Msa0664850 | MtrunA17_Chr4g0002901 | 74.781 | 571 | 137 | 7 | 1 | 566 | 1 | 569 | 0.0 | 845 |
| Msa0664850 | MtrunA17_Chr4g0002861 | 74.373 | 558 | 138 | 5 | 1 | 554 | 1 | 557 | 0.0 | 802 |
| Msa0664850 | MtrunA17_Chr7g0220521 | 59.855 | 553 | 211 | 8 | 1 | 551 | 1 | 544 | 0.0 | 660 |
| Msa0664850 | MtrunA17_Chr2g0300311 | 32.821 | 195 | 117 | 4 | 6 | 198 | 15 | 197 | 1.21e-21 | 98.6 |
| Msa0664850 | MtrunA17_Chr2g0297831 | 29.545 | 264 | 168 | 6 | 20 | 277 | 46 | 297 | 1.18e-19 | 92.4 |
| Msa0664850 | MtrunA17_Chr5g0439661 | 32.530 | 166 | 106 | 5 | 43 | 205 | 29 | 191 | 2.32e-17 | 80.9 |
| Msa0664850 | MtrunA17_Chr5g0439641 | 30.366 | 191 | 121 | 7 | 370 | 556 | 271 | 453 | 3.26e-17 | 84.3 |
| Msa0664850 | MtrunA17_Chr5g0439641 | 29.956 | 227 | 134 | 10 | 33 | 245 | 24 | 239 | 3.40e-13 | 72.0 |
| Msa0664850 | MtrunA17_Chr5g0439721 | 33.831 | 201 | 114 | 9 | 370 | 563 | 257 | 445 | 4.76e-17 | 84.0 |
| Msa0664850 | MtrunA17_Chr5g0439721 | 30.622 | 209 | 122 | 7 | 43 | 244 | 33 | 225 | 1.12e-15 | 79.7 |
| Msa0664850 | MtrunA17_Chr5g0401791 | 31.579 | 171 | 105 | 6 | 21 | 186 | 78 | 241 | 5.76e-17 | 84.0 |
| Msa0664850 | MtrunA17_Chr5g0440401 | 30.688 | 189 | 123 | 5 | 370 | 556 | 38 | 220 | 5.86e-17 | 80.1 |
| Msa0664850 | MtrunA17_Chr5g0439681 | 31.217 | 189 | 111 | 8 | 376 | 556 | 137 | 314 | 2.23e-15 | 77.4 |
| Msa0664850 | MtrunA17_Chr8g0335061 | 35.000 | 160 | 89 | 6 | 42 | 197 | 27 | 175 | 2.29e-15 | 78.6 |
| Msa0664850 | MtrunA17_Chr7g0238511 | 30.102 | 196 | 126 | 5 | 359 | 547 | 242 | 433 | 1.22e-14 | 76.3 |
| Msa0664850 | MtrunA17_Chr2g0296801 | 28.090 | 178 | 124 | 3 | 374 | 549 | 175 | 350 | 2.57e-14 | 74.7 |
| Msa0664850 | MtrunA17_Chr6g0452601 | 25.294 | 170 | 111 | 2 | 43 | 212 | 26 | 179 | 3.91e-14 | 74.7 |
| Msa0664850 | MtrunA17_Chr6g0452601 | 26.857 | 175 | 127 | 1 | 374 | 547 | 244 | 418 | 5.31e-11 | 65.1 |
| Msa0664850 | MtrunA17_Chr8g0334911 | 30.808 | 198 | 117 | 7 | 42 | 230 | 28 | 214 | 7.83e-14 | 73.9 |
| Msa0664850 | MtrunA17_Chr8g0334971 | 32.298 | 161 | 92 | 5 | 42 | 197 | 27 | 175 | 2.32e-13 | 72.4 |
| Msa0664850 | MtrunA17_Chr8g0334971 | 29.851 | 134 | 93 | 1 | 406 | 539 | 301 | 433 | 4.66e-12 | 68.2 |
| Msa0664850 | MtrunA17_Chr7g0218171 | 28.814 | 177 | 119 | 2 | 375 | 547 | 124 | 297 | 3.31e-13 | 70.9 |
| Msa0664850 | MtrunA17_Chr8g0335011 | 31.176 | 170 | 103 | 4 | 42 | 197 | 36 | 205 | 5.32e-13 | 71.6 |
| Msa0664850 | MtrunA17_Chr8g0335011 | 31.250 | 144 | 95 | 2 | 398 | 541 | 349 | 488 | 2.27e-12 | 69.3 |
| Msa0664850 | MtrunA17_Chr6g0452551 | 26.282 | 156 | 99 | 4 | 43 | 198 | 26 | 165 | 7.85e-13 | 70.5 |
| Msa0664850 | MtrunA17_Chr8g0334951 | 31.646 | 158 | 94 | 6 | 42 | 195 | 29 | 176 | 8.60e-13 | 70.5 |
| Msa0664850 | MtrunA17_Chr6g0452531 | 26.875 | 160 | 93 | 4 | 43 | 198 | 26 | 165 | 9.94e-13 | 70.1 |
| Msa0664850 | MtrunA17_Chr6g0452531 | 29.050 | 179 | 126 | 1 | 370 | 547 | 232 | 410 | 4.79e-12 | 68.2 |
| Msa0664850 | MtrunA17_Chr7g0238131 | 30.213 | 235 | 143 | 8 | 329 | 548 | 185 | 413 | 1.96e-12 | 69.3 |
| Msa0664850 | MtrunA17_Chr8g0335071 | 29.448 | 163 | 111 | 4 | 385 | 547 | 297 | 455 | 2.42e-12 | 69.3 |
| Msa0664850 | MtrunA17_Chr3g0118601 | 29.885 | 174 | 119 | 2 | 376 | 547 | 277 | 449 | 2.84e-12 | 68.9 |
| Msa0664850 | MtrunA17_Chr6g0452561 | 28.261 | 184 | 123 | 3 | 372 | 547 | 243 | 425 | 3.56e-12 | 68.6 |
| Msa0664850 | MtrunA17_Chr6g0452561 | 25.143 | 175 | 117 | 4 | 35 | 207 | 18 | 180 | 8.58e-11 | 64.3 |
| Msa0664850 | MtrunA17_Chr6g0452501 | 25.000 | 156 | 101 | 3 | 43 | 198 | 26 | 165 | 4.72e-12 | 68.2 |
| Msa0664850 | MtrunA17_Chr6g0452611 | 26.380 | 163 | 94 | 4 | 42 | 198 | 24 | 166 | 6.18e-12 | 67.8 |
| Msa0664850 | MtrunA17_Chr7g0238231 | 30.496 | 141 | 96 | 2 | 408 | 547 | 348 | 487 | 7.61e-12 | 67.8 |
| Msa0664850 | MtrunA17_Chr6g0452161 | 25.749 | 167 | 107 | 3 | 41 | 207 | 24 | 173 | 8.64e-12 | 67.4 |
| Msa0664850 | MtrunA17_Chr7g0265891 | 28.571 | 189 | 125 | 4 | 374 | 555 | 270 | 455 | 8.78e-12 | 67.4 |
| Msa0664850 | MtrunA17_Chr6g0457371 | 26.994 | 163 | 99 | 4 | 43 | 203 | 26 | 170 | 1.37e-11 | 66.6 |
| Msa0664850 | MtrunA17_Chr7g0242091 | 28.743 | 167 | 109 | 4 | 41 | 200 | 53 | 216 | 1.69e-11 | 67.0 |
| Msa0664850 | MtrunA17_Chr3g0107251 | 26.087 | 207 | 131 | 5 | 21 | 219 | 11 | 203 | 1.82e-11 | 66.6 |
| Msa0664850 | MtrunA17_Chr7g0238051 | 30.282 | 142 | 97 | 2 | 408 | 548 | 223 | 363 | 2.11e-11 | 65.9 |
| Msa0664850 | MtrunA17_Chr8g0335021 | 29.104 | 134 | 94 | 1 | 408 | 541 | 314 | 446 | 6.23e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664850 | AT3G02645.1 | 45.714 | 525 | 241 | 10 | 9 | 525 | 9 | 497 | 3.55e-152 | 447 |
| Msa0664850 | AT3G50120.1 | 33.816 | 207 | 125 | 6 | 21 | 224 | 80 | 277 | 5.65e-27 | 115 |
| Msa0664850 | AT3G50120.1 | 29.348 | 184 | 120 | 5 | 374 | 552 | 350 | 528 | 7.56e-12 | 68.6 |
| Msa0664850 | AT3G50180.1 | 33.010 | 206 | 127 | 5 | 21 | 224 | 155 | 351 | 5.73e-26 | 112 |
| Msa0664850 | AT3G50180.1 | 29.121 | 182 | 121 | 5 | 374 | 549 | 403 | 582 | 1.62e-11 | 67.4 |
| Msa0664850 | AT3G50170.2 | 31.308 | 214 | 135 | 6 | 13 | 224 | 84 | 287 | 1.55e-25 | 109 |
| Msa0664850 | AT3G50170.1 | 32.093 | 215 | 132 | 7 | 13 | 224 | 84 | 287 | 5.59e-25 | 109 |
| Msa0664850 | AT3G50170.1 | 27.473 | 182 | 126 | 3 | 374 | 552 | 358 | 536 | 4.44e-12 | 69.3 |
| Msa0664850 | AT3G50140.2 | 31.579 | 209 | 133 | 5 | 21 | 227 | 90 | 290 | 1.12e-23 | 103 |
| Msa0664850 | AT3G50150.2 | 31.250 | 208 | 130 | 7 | 21 | 224 | 67 | 265 | 1.16e-23 | 104 |
| Msa0664850 | AT3G50140.1 | 31.579 | 209 | 133 | 5 | 21 | 227 | 90 | 290 | 1.37e-23 | 105 |
| Msa0664850 | AT3G50140.1 | 26.601 | 203 | 139 | 4 | 353 | 548 | 333 | 532 | 6.38e-12 | 68.6 |
| Msa0664850 | AT3G50150.1 | 31.250 | 208 | 130 | 7 | 21 | 224 | 67 | 265 | 2.30e-23 | 104 |
| Msa0664850 | AT3G50150.1 | 30.978 | 184 | 117 | 5 | 374 | 552 | 328 | 506 | 3.58e-16 | 82.0 |
| Msa0664850 | AT3G44710.1 | 23.494 | 498 | 310 | 14 | 58 | 548 | 64 | 497 | 5.39e-23 | 103 |
| Msa0664850 | AT3G50130.1 | 29.126 | 206 | 136 | 5 | 21 | 224 | 116 | 313 | 7.53e-23 | 102 |
| Msa0664850 | AT3G50160.1 | 31.250 | 208 | 124 | 7 | 20 | 225 | 81 | 271 | 2.45e-20 | 94.7 |
| Msa0664850 | AT3G50160.1 | 30.348 | 201 | 122 | 7 | 356 | 549 | 306 | 495 | 7.27e-14 | 74.7 |
| Msa0664850 | AT3G50190.2 | 31.383 | 188 | 120 | 5 | 21 | 206 | 73 | 253 | 3.68e-18 | 86.7 |
| Msa0664850 | AT3G50190.4 | 31.383 | 188 | 120 | 5 | 21 | 206 | 73 | 253 | 4.59e-18 | 86.7 |
| Msa0664850 | AT3G50190.3 | 31.383 | 188 | 120 | 5 | 21 | 206 | 73 | 253 | 4.59e-18 | 86.7 |
| Msa0664850 | AT3G50190.1 | 31.383 | 188 | 120 | 5 | 21 | 206 | 73 | 253 | 7.88e-18 | 87.0 |
| Msa0664850 | AT5G11290.2 | 31.677 | 161 | 95 | 3 | 41 | 198 | 32 | 180 | 1.42e-16 | 82.8 |
| Msa0664850 | AT3G47200.1 | 29.658 | 263 | 158 | 9 | 35 | 290 | 39 | 281 | 3.44e-16 | 81.6 |
| Msa0664850 | AT3G47200.2 | 29.658 | 263 | 158 | 9 | 35 | 290 | 39 | 281 | 3.44e-16 | 81.6 |
| Msa0664850 | AT3G47250.3 | 31.720 | 186 | 107 | 4 | 22 | 197 | 36 | 211 | 3.65e-16 | 81.6 |
| Msa0664850 | AT3G47250.2 | 31.720 | 186 | 107 | 4 | 22 | 197 | 36 | 211 | 3.65e-16 | 81.6 |
| Msa0664850 | AT3G47250.1 | 31.720 | 186 | 107 | 4 | 22 | 197 | 36 | 211 | 3.65e-16 | 81.6 |
| Msa0664850 | AT3G47210.1 | 34.356 | 163 | 99 | 3 | 35 | 197 | 86 | 240 | 7.20e-16 | 80.9 |
| Msa0664850 | AT4G31980.1 | 27.429 | 175 | 112 | 3 | 42 | 213 | 293 | 455 | 8.15e-16 | 81.3 |
| Msa0664850 | AT4G31980.1 | 29.143 | 175 | 119 | 4 | 375 | 547 | 506 | 677 | 1.41e-11 | 67.8 |
| Msa0664850 | AT2G36430.1 | 24.806 | 258 | 154 | 6 | 38 | 284 | 41 | 269 | 1.70e-15 | 79.3 |
| Msa0664850 | AT5G22550.2 | 29.333 | 225 | 139 | 9 | 34 | 252 | 36 | 246 | 4.57e-15 | 78.6 |
| Msa0664850 | AT5G22550.2 | 26.667 | 180 | 131 | 1 | 374 | 552 | 308 | 487 | 2.77e-12 | 69.7 |
| Msa0664850 | AT5G22560.1 | 25.564 | 266 | 167 | 7 | 11 | 257 | 13 | 266 | 1.80e-13 | 73.6 |
| Msa0664850 | AT5G22560.1 | 26.519 | 181 | 130 | 3 | 374 | 552 | 335 | 514 | 2.40e-11 | 66.6 |
| Msa0664850 | AT5G22550.1 | 26.667 | 180 | 131 | 1 | 374 | 552 | 259 | 438 | 3.15e-12 | 69.3 |
| Msa0664850 | AT5G22540.1 | 27.727 | 220 | 145 | 6 | 35 | 252 | 24 | 231 | 3.72e-12 | 68.9 |
| Msa0664850 | AT5G22540.1 | 26.966 | 178 | 129 | 1 | 376 | 552 | 258 | 435 | 3.27e-11 | 66.2 |
| Msa0664850 | AT2G28580.6 | 25.907 | 193 | 140 | 3 | 356 | 547 | 257 | 447 | 9.80e-11 | 64.7 |
Find 83 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCTCAAACTCTTCTTCT+AGG | 0.153796 | 4_4:-4127648 | None:intergenic |
| CAACCTTTGATGAGAATCTT+TGG | 0.179806 | 4_4:+4127605 | Msa0664850:CDS |
| TGTTGTGGAACATAAGAATT+TGG | 0.183132 | 4_4:-4127730 | None:intergenic |
| GCAAAGATTCTAAGAGAAAA+AGG | 0.234685 | 4_4:+4128927 | Msa0664850:CDS |
| AAGCTTTGGCACATTGAAAA+TGG | 0.249135 | 4_4:-4127692 | None:intergenic |
| CAATGTGCCAAAGCTTCTTA+TGG | 0.260296 | 4_4:+4127699 | Msa0664850:CDS |
| CTTGATATGCTTCCATTTGT+AGG | 0.267254 | 4_4:-4128729 | None:intergenic |
| AGCATGCTACCACAAATTCT+TGG | 0.287384 | 4_4:+4127906 | Msa0664850:CDS |
| CAATTGGTCCCTACCATTAT+TGG | 0.314543 | 4_4:+4127758 | Msa0664850:CDS |
| TCATCTTCCCACAATTAGTT+TGG | 0.323252 | 4_4:+4128782 | Msa0664850:CDS |
| GAAGAGTTTGAGGAGGAAAA+TGG | 0.326776 | 4_4:+4127655 | Msa0664850:CDS |
| TGTTGATATTAATGTGTATA+AGG | 0.328473 | 4_4:+4128193 | Msa0664850:CDS |
| TCAATAGTCTTATCCAAGTA+TGG | 0.342784 | 4_4:-4129035 | None:intergenic |
| ATCTTTCTCAAAACAAATAA+TGG | 0.347136 | 4_4:-4128126 | None:intergenic |
| TTTGTTCCAACTTTCTCAAT+TGG | 0.347934 | 4_4:-4127876 | None:intergenic |
| TTTATGAAGTCTTATGTGTT+TGG | 0.373276 | 4_4:+4129107 | Msa0664850:CDS |
| ATACAATGAAGATCAAGATT+TGG | 0.376198 | 4_4:+4129081 | Msa0664850:CDS |
| GCCTTTGCATGGAATCAAAA+AGG | 0.377556 | 4_4:+4128470 | Msa0664850:CDS |
| CTTTCATGGCATAAAATTGA+AGG | 0.378368 | 4_4:-4127990 | None:intergenic |
| AACCTTTGATGAGAATCTTT+GGG | 0.378384 | 4_4:+4127606 | Msa0664850:CDS |
| TAGAATCTTTGCATCGTTCT+CGG | 0.385581 | 4_4:-4128916 | None:intergenic |
| GTTGAACAACTTGTGATTGC+AGG | 0.386181 | 4_4:+4128693 | Msa0664850:CDS |
| GAGTTTAAAAGGTGTTCAAT+AGG | 0.391781 | 4_4:-4128579 | None:intergenic |
| CTCCTCAAACTCTTCTTCTA+GGG | 0.397644 | 4_4:-4127647 | None:intergenic |
| GTTAATTTCTTACCTACAAA+TGG | 0.403126 | 4_4:+4128717 | Msa0664850:CDS |
| AGAGTTCTTGACGCCAATAA+TGG | 0.405296 | 4_4:-4127771 | None:intergenic |
| ATCGGTTGGATCGGGACCTT+TGG | 0.407115 | 4_4:+4128851 | Msa0664850:CDS |
| TGTTGACCAATTGAGAAAGT+TGG | 0.426632 | 4_4:+4127870 | Msa0664850:CDS |
| ATATCCCTCAAAATTGCATT+AGG | 0.430899 | 4_4:-4128081 | None:intergenic |
| CACTCTAAGACTTGAATGTT+AGG | 0.432592 | 4_4:-4128258 | None:intergenic |
| AGTCTTATGTGTTTGGTTCA+TGG | 0.433433 | 4_4:+4129114 | Msa0664850:CDS |
| ATTGTCAAGGGTGCCATACT+TGG | 0.436193 | 4_4:+4129022 | Msa0664850:CDS |
| CACAAATTCTTGGATTTGAA+CGG | 0.444811 | 4_4:+4127916 | Msa0664850:CDS |
| CGTTCAAATCCAAGAATTTG+TGG | 0.452276 | 4_4:-4127915 | None:intergenic |
| GAAAACATAACCAACCTTCC+CGG | 0.454012 | 4_4:+4128537 | Msa0664850:CDS |
| TCACTAGCCATAAGAAGCTT+TGG | 0.455256 | 4_4:-4127706 | None:intergenic |
| ATACTCTTCAAACATCTTGA+AGG | 0.456719 | 4_4:-4128235 | None:intergenic |
| AAGCAAAATTAATTTGTGTC+CGG | 0.458518 | 4_4:-4129251 | None:intergenic |
| GTTCCACAACAAGTTGCAAT+TGG | 0.462687 | 4_4:+4127742 | Msa0664850:CDS |
| AACCCTAGAAGAAGAGTTTG+AGG | 0.465593 | 4_4:+4127645 | Msa0664850:CDS |
| TTGCTTTCAAAGTTAATCAA+AGG | 0.473622 | 4_4:+4128447 | Msa0664850:CDS |
| TGCTTTCAAAGTTAATCAAA+GGG | 0.475992 | 4_4:+4128448 | Msa0664850:CDS |
| TATGAATCATCGGTTGGATC+GGG | 0.482387 | 4_4:+4128843 | Msa0664850:CDS |
| GGCACTAGAGCTTACATCTC+CGG | 0.488018 | 4_4:+4129232 | Msa0664850:CDS |
| AAAGAACAAAACACCCTTGG+TGG | 0.493519 | 4_4:+4128650 | Msa0664850:CDS |
| GGACCAATTGCAACTTGTTG+TGG | 0.498583 | 4_4:-4127745 | None:intergenic |
| AGTTGAGATTCAACAAGAAG+TGG | 0.506414 | 4_4:+4128350 | Msa0664850:CDS |
| GGATTTGAACGGCGAAACCT+TGG | 0.522838 | 4_4:+4127927 | Msa0664850:CDS |
| GTTCACATCCAAACTAATTG+TGG | 0.522949 | 4_4:-4128790 | None:intergenic |
| CGTTACACAGAATTGATGAA+TGG | 0.524075 | 4_4:+4128882 | Msa0664850:CDS |
| CTTGGTTGCATATGAATCAT+CGG | 0.528032 | 4_4:+4128833 | Msa0664850:CDS |
| ATATGAATCATCGGTTGGAT+CGG | 0.532054 | 4_4:+4128842 | Msa0664850:CDS |
| TTAATCAAAGGGCCTTTGCA+TGG | 0.532931 | 4_4:+4128459 | Msa0664850:CDS |
| GTTTACAAAATGAGACATGT+TGG | 0.533371 | 4_4:-4128037 | None:intergenic |
| GTTGCATATGAATCATCGGT+TGG | 0.535467 | 4_4:+4128837 | Msa0664850:CDS |
| CACCCAAAGATTCTCATCAA+AGG | 0.543342 | 4_4:-4127608 | None:intergenic |
| AAACTCTCAAAAGAAAGAAG+AGG | 0.550779 | 4_4:+4128596 | Msa0664850:CDS |
| TTCACATCCAAACTAATTGT+GGG | 0.553100 | 4_4:-4128789 | None:intergenic |
| GAAGTGGCTAACATGTGGAA+TGG | 0.555812 | 4_4:+4128981 | Msa0664850:CDS |
| AAGTTTGATTCCGGGAAGGT+TGG | 0.561655 | 4_4:-4128547 | None:intergenic |
| TCTAAAGAACAAAACACCCT+TGG | 0.564159 | 4_4:+4128647 | Msa0664850:CDS |
| TTGAACAACTTGTGATTGCA+GGG | 0.565312 | 4_4:+4128694 | Msa0664850:CDS |
| ATCACAAGTTGTTCAACAGA+AGG | 0.571806 | 4_4:-4128687 | None:intergenic |
| CTTGGATAAGACTATTGAAG+AGG | 0.583268 | 4_4:+4129040 | Msa0664850:CDS |
| GAACAAAACACCCTTGGTGG+AGG | 0.589662 | 4_4:+4128653 | Msa0664850:CDS |
| TACTCTTCAAACATCTTGAA+GGG | 0.594471 | 4_4:-4128234 | None:intergenic |
| CAAGAAGTGGATCAACAAGA+AGG | 0.599718 | 4_4:+4128363 | Msa0664850:CDS |
| TTCTTGACGCCAATAATGGT+AGG | 0.599841 | 4_4:-4127767 | None:intergenic |
| TTACAAGTTTGATTCCGGGA+AGG | 0.605936 | 4_4:-4128551 | None:intergenic |
| TGTCATGAACAAGAGGAAGA+TGG | 0.606762 | 4_4:-4129159 | None:intergenic |
| GCAAGGCTGTCATGAACAAG+AGG | 0.607214 | 4_4:-4129166 | None:intergenic |
| CAAGTCATTGAGATTGTCAA+GGG | 0.609843 | 4_4:+4129010 | Msa0664850:CDS |
| ATAAAGAAGTGGCTAACATG+TGG | 0.611887 | 4_4:+4128976 | Msa0664850:CDS |
| CCTAGAAGAAGAGTTTGAGG+AGG | 0.616622 | 4_4:+4127648 | Msa0664850:CDS |
| GCAAGTCATTGAGATTGTCA+AGG | 0.627588 | 4_4:+4129009 | Msa0664850:CDS |
| ATAGTGATTTCCTCCACCAA+GGG | 0.631478 | 4_4:-4128663 | None:intergenic |
| TCTTGACGCCAATAATGGTA+GGG | 0.634295 | 4_4:-4127766 | None:intergenic |
| ATGTCATCGCTTCTTTGACA+AGG | 0.643036 | 4_4:+4129211 | Msa0664850:CDS |
| GTGTAACGAGTTATAACCAA+AGG | 0.648298 | 4_4:-4128867 | None:intergenic |
| AATAGTGATTTCCTCCACCA+AGG | 0.656034 | 4_4:-4128664 | None:intergenic |
| TGAACGGCGAAACCTTGGTG+TGG | 0.667267 | 4_4:+4127932 | Msa0664850:CDS |
| AACAATCATCATCCACACCA+AGG | 0.684599 | 4_4:-4127944 | None:intergenic |
| TGAACAACTTGTGATTGCAG+GGG | 0.724681 | 4_4:+4128695 | Msa0664850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTAGAATTATATGACA+TGG | - | chr4_4:4127587-4127606 | None:intergenic | 20.0% |
| !! | ATCTTTCTCAAAACAAATAA+TGG | - | chr4_4:4128129-4128148 | None:intergenic | 20.0% |
| !! | TGTTGATATTAATGTGTATA+AGG | + | chr4_4:4128193-4128212 | Msa0664850:CDS | 20.0% |
| !! | TACTCAAAAATTTCTTAACA+TGG | - | chr4_4:4128416-4128435 | None:intergenic | 20.0% |
| !!! | AGAAATTTTTGAGTATACTT+TGG | + | chr4_4:4128421-4128440 | Msa0664850:CDS | 20.0% |
| !!! | TGTTTTAGAATTATATGACA+TGG | - | chr4_4:4127587-4127606 | None:intergenic | 20.0% |
| !! | ATCTTTCTCAAAACAAATAA+TGG | - | chr4_4:4128129-4128148 | None:intergenic | 20.0% |
| !! | TGTTGATATTAATGTGTATA+AGG | + | chr4_4:4128193-4128212 | Msa0664850:CDS | 20.0% |
| !! | TACTCAAAAATTTCTTAACA+TGG | - | chr4_4:4128416-4128435 | None:intergenic | 20.0% |
| !!! | AGAAATTTTTGAGTATACTT+TGG | + | chr4_4:4128421-4128440 | Msa0664850:CDS | 20.0% |
| !!! | CTTTTTTGATTCTTCTTTCA+TGG | - | chr4_4:4128007-4128026 | None:intergenic | 25.0% |
| !! | TCTCATTTTGTAAACTATGT+TGG | + | chr4_4:4128045-4128064 | Msa0664850:CDS | 25.0% |
| !! | CTCATTTTGTAAACTATGTT+GGG | + | chr4_4:4128046-4128065 | Msa0664850:CDS | 25.0% |
| !!! | CCATGTTGTTTTTCTAATTT+TGG | - | chr4_4:4128321-4128340 | None:intergenic | 25.0% |
| ! | CCAAAATTAGAAAAACAACA+TGG | + | chr4_4:4128318-4128337 | Msa0664850:CDS | 25.0% |
| ! | CAAAAATTTCTTAACATGGA+TGG | - | chr4_4:4128412-4128431 | None:intergenic | 25.0% |
| ! | TTGCTTTCAAAGTTAATCAA+AGG | + | chr4_4:4128447-4128466 | Msa0664850:CDS | 25.0% |
| ! | TGCTTTCAAAGTTAATCAAA+GGG | + | chr4_4:4128448-4128467 | Msa0664850:CDS | 25.0% |
| !!! | AACTTTTTAAGGACTTTTAG+AGG | - | chr4_4:4128510-4128529 | None:intergenic | 25.0% |
| !!! | TTGTTTTACAAGTTTGATTC+CGG | - | chr4_4:4128559-4128578 | None:intergenic | 25.0% |
| !!! | CTTTCTTTTGAGAGTTTAAA+AGG | - | chr4_4:4128593-4128612 | None:intergenic | 25.0% |
| ! | GTTAATTTCTTACCTACAAA+TGG | + | chr4_4:4128717-4128736 | Msa0664850:CDS | 25.0% |
| !! | CAAGTTTCTAAGAAAAACTT+CGG | - | chr4_4:4128817-4128836 | None:intergenic | 25.0% |
| !! | CAAAGATTCTAAGAGAAAAA+GGG | + | chr4_4:4128928-4128947 | Msa0664850:CDS | 25.0% |
| ! | CTTAAAAAGTGATAAAGAAG+TGG | + | chr4_4:4128965-4128984 | Msa0664850:CDS | 25.0% |
| ! | ATACAATGAAGATCAAGATT+TGG | + | chr4_4:4129081-4129100 | Msa0664850:CDS | 25.0% |
| !! | TTTATGAAGTCTTATGTGTT+TGG | + | chr4_4:4129107-4129126 | Msa0664850:CDS | 25.0% |
| !!! | CTTTTTTGATTCTTCTTTCA+TGG | - | chr4_4:4128007-4128026 | None:intergenic | 25.0% |
| !! | TCTCATTTTGTAAACTATGT+TGG | + | chr4_4:4128045-4128064 | Msa0664850:CDS | 25.0% |
| !! | CTCATTTTGTAAACTATGTT+GGG | + | chr4_4:4128046-4128065 | Msa0664850:CDS | 25.0% |
| !!! | CCATGTTGTTTTTCTAATTT+TGG | - | chr4_4:4128321-4128340 | None:intergenic | 25.0% |
| ! | CCAAAATTAGAAAAACAACA+TGG | + | chr4_4:4128318-4128337 | Msa0664850:CDS | 25.0% |
| ! | CAAAAATTTCTTAACATGGA+TGG | - | chr4_4:4128412-4128431 | None:intergenic | 25.0% |
| ! | TTGCTTTCAAAGTTAATCAA+AGG | + | chr4_4:4128447-4128466 | Msa0664850:CDS | 25.0% |
| ! | TGCTTTCAAAGTTAATCAAA+GGG | + | chr4_4:4128448-4128467 | Msa0664850:CDS | 25.0% |
| !!! | AACTTTTTAAGGACTTTTAG+AGG | - | chr4_4:4128510-4128529 | None:intergenic | 25.0% |
| !!! | TTGTTTTACAAGTTTGATTC+CGG | - | chr4_4:4128559-4128578 | None:intergenic | 25.0% |
| !!! | CTTTCTTTTGAGAGTTTAAA+AGG | - | chr4_4:4128593-4128612 | None:intergenic | 25.0% |
| ! | GTTAATTTCTTACCTACAAA+TGG | + | chr4_4:4128717-4128736 | Msa0664850:CDS | 25.0% |
| !! | CAAGTTTCTAAGAAAAACTT+CGG | - | chr4_4:4128817-4128836 | None:intergenic | 25.0% |
| !! | CAAAGATTCTAAGAGAAAAA+GGG | + | chr4_4:4128928-4128947 | Msa0664850:CDS | 25.0% |
| ! | CTTAAAAAGTGATAAAGAAG+TGG | + | chr4_4:4128965-4128984 | Msa0664850:CDS | 25.0% |
| ! | ATACAATGAAGATCAAGATT+TGG | + | chr4_4:4129081-4129100 | Msa0664850:CDS | 25.0% |
| !! | TTTATGAAGTCTTATGTGTT+TGG | + | chr4_4:4129107-4129126 | Msa0664850:CDS | 25.0% |
| AACCTTTGATGAGAATCTTT+GGG | + | chr4_4:4127606-4127625 | Msa0664850:CDS | 30.0% | |
| TGTTGTGGAACATAAGAATT+TGG | - | chr4_4:4127733-4127752 | None:intergenic | 30.0% | |
| !! | TGACACTTTGTAGTTGTTTT+TGG | - | chr4_4:4127837-4127856 | None:intergenic | 30.0% |
| TTTGTTCCAACTTTCTCAAT+TGG | - | chr4_4:4127879-4127898 | None:intergenic | 30.0% | |
| CACAAATTCTTGGATTTGAA+CGG | + | chr4_4:4127916-4127935 | Msa0664850:CDS | 30.0% | |
| CTTTCATGGCATAAAATTGA+AGG | - | chr4_4:4127993-4128012 | None:intergenic | 30.0% | |
| GTTTACAAAATGAGACATGT+TGG | - | chr4_4:4128040-4128059 | None:intergenic | 30.0% | |
| ! | ATTTTGTAAACTATGTTGGG+AGG | + | chr4_4:4128049-4128068 | Msa0664850:CDS | 30.0% |
| ! | TATCTCCTAATGCAATTTTG+AGG | + | chr4_4:4128076-4128095 | Msa0664850:CDS | 30.0% |
| ! | ATCTCCTAATGCAATTTTGA+GGG | + | chr4_4:4128077-4128096 | Msa0664850:CDS | 30.0% |
| ATATCCCTCAAAATTGCATT+AGG | - | chr4_4:4128084-4128103 | None:intergenic | 30.0% | |
| TACTCTTCAAACATCTTGAA+GGG | - | chr4_4:4128237-4128256 | None:intergenic | 30.0% | |
| ATACTCTTCAAACATCTTGA+AGG | - | chr4_4:4128238-4128257 | None:intergenic | 30.0% | |
| AAGTCCTTAAAAAGTTACCT+TGG | + | chr4_4:4128514-4128533 | Msa0664850:CDS | 30.0% | |
| AGTCCTTAAAAAGTTACCTT+GGG | + | chr4_4:4128515-4128534 | Msa0664850:CDS | 30.0% | |
| ! | TTTCCCAAGGTAACTTTTTA+AGG | - | chr4_4:4128521-4128540 | None:intergenic | 30.0% |
| ! | TGTTTTACAAGTTTGATTCC+GGG | - | chr4_4:4128558-4128577 | None:intergenic | 30.0% |
| !! | GAGTTTAAAAGGTGTTCAAT+AGG | - | chr4_4:4128582-4128601 | None:intergenic | 30.0% |
| AAACTCTCAAAAGAAAGAAG+AGG | + | chr4_4:4128596-4128615 | Msa0664850:CDS | 30.0% | |
| ! | GTACTAGAGTTTTCATCTTT+TGG | - | chr4_4:4128627-4128646 | None:intergenic | 30.0% |
| TTCACATCCAAACTAATTGT+GGG | - | chr4_4:4128792-4128811 | None:intergenic | 30.0% | |
| ! | CGAAGTTTTTCTTAGAAACT+TGG | + | chr4_4:4128815-4128834 | Msa0664850:CDS | 30.0% |
| ! | GCAAAGATTCTAAGAGAAAA+AGG | + | chr4_4:4128927-4128946 | Msa0664850:CDS | 30.0% |
| !! | TCAATAGTCTTATCCAAGTA+TGG | - | chr4_4:4129038-4129057 | None:intergenic | 30.0% |
| ! | ATGGCAGTTTTTAACATTCT+TGG | + | chr4_4:4129133-4129152 | Msa0664850:CDS | 30.0% |
| AACCTTTGATGAGAATCTTT+GGG | + | chr4_4:4127606-4127625 | Msa0664850:CDS | 30.0% | |
| TGTTGTGGAACATAAGAATT+TGG | - | chr4_4:4127733-4127752 | None:intergenic | 30.0% | |
| !! | TGACACTTTGTAGTTGTTTT+TGG | - | chr4_4:4127837-4127856 | None:intergenic | 30.0% |
| TTTGTTCCAACTTTCTCAAT+TGG | - | chr4_4:4127879-4127898 | None:intergenic | 30.0% | |
| CACAAATTCTTGGATTTGAA+CGG | + | chr4_4:4127916-4127935 | Msa0664850:CDS | 30.0% | |
| CTTTCATGGCATAAAATTGA+AGG | - | chr4_4:4127993-4128012 | None:intergenic | 30.0% | |
| GTTTACAAAATGAGACATGT+TGG | - | chr4_4:4128040-4128059 | None:intergenic | 30.0% | |
| ! | ATTTTGTAAACTATGTTGGG+AGG | + | chr4_4:4128049-4128068 | Msa0664850:CDS | 30.0% |
| ! | TATCTCCTAATGCAATTTTG+AGG | + | chr4_4:4128076-4128095 | Msa0664850:CDS | 30.0% |
| ! | ATCTCCTAATGCAATTTTGA+GGG | + | chr4_4:4128077-4128096 | Msa0664850:CDS | 30.0% |
| ATATCCCTCAAAATTGCATT+AGG | - | chr4_4:4128084-4128103 | None:intergenic | 30.0% | |
| TACTCTTCAAACATCTTGAA+GGG | - | chr4_4:4128237-4128256 | None:intergenic | 30.0% | |
| ATACTCTTCAAACATCTTGA+AGG | - | chr4_4:4128238-4128257 | None:intergenic | 30.0% | |
| AAGTCCTTAAAAAGTTACCT+TGG | + | chr4_4:4128514-4128533 | Msa0664850:CDS | 30.0% | |
| AGTCCTTAAAAAGTTACCTT+GGG | + | chr4_4:4128515-4128534 | Msa0664850:CDS | 30.0% | |
| ! | TTTCCCAAGGTAACTTTTTA+AGG | - | chr4_4:4128521-4128540 | None:intergenic | 30.0% |
| ! | TGTTTTACAAGTTTGATTCC+GGG | - | chr4_4:4128558-4128577 | None:intergenic | 30.0% |
| !! | GAGTTTAAAAGGTGTTCAAT+AGG | - | chr4_4:4128582-4128601 | None:intergenic | 30.0% |
| AAACTCTCAAAAGAAAGAAG+AGG | + | chr4_4:4128596-4128615 | Msa0664850:CDS | 30.0% | |
| ! | GTACTAGAGTTTTCATCTTT+TGG | - | chr4_4:4128627-4128646 | None:intergenic | 30.0% |
| TTCACATCCAAACTAATTGT+GGG | - | chr4_4:4128792-4128811 | None:intergenic | 30.0% | |
| ! | CGAAGTTTTTCTTAGAAACT+TGG | + | chr4_4:4128815-4128834 | Msa0664850:CDS | 30.0% |
| ! | GCAAAGATTCTAAGAGAAAA+AGG | + | chr4_4:4128927-4128946 | Msa0664850:CDS | 30.0% |
| !! | TCAATAGTCTTATCCAAGTA+TGG | - | chr4_4:4129038-4129057 | None:intergenic | 30.0% |
| ! | ATGGCAGTTTTTAACATTCT+TGG | + | chr4_4:4129133-4129152 | Msa0664850:CDS | 30.0% |
| CAACCTTTGATGAGAATCTT+TGG | + | chr4_4:4127605-4127624 | Msa0664850:CDS | 35.0% | |
| ! | AAGCTTTGGCACATTGAAAA+TGG | - | chr4_4:4127695-4127714 | None:intergenic | 35.0% |
| TGTTGACCAATTGAGAAAGT+TGG | + | chr4_4:4127870-4127889 | Msa0664850:CDS | 35.0% | |
| CGTTCAAATCCAAGAATTTG+TGG | - | chr4_4:4127918-4127937 | None:intergenic | 35.0% | |
| !! | CACTCTAAGACTTGAATGTT+AGG | - | chr4_4:4128261-4128280 | None:intergenic | 35.0% |
| AGTTGAGATTCAACAAGAAG+TGG | + | chr4_4:4128350-4128369 | Msa0664850:CDS | 35.0% | |
| !! | ACCTTTTTGATTCCATGCAA+AGG | - | chr4_4:4128474-4128493 | None:intergenic | 35.0% |
| TCTAAAGAACAAAACACCCT+TGG | + | chr4_4:4128647-4128666 | Msa0664850:CDS | 35.0% | |
| ATCACAAGTTGTTCAACAGA+AGG | - | chr4_4:4128690-4128709 | None:intergenic | 35.0% | |
| TTGAACAACTTGTGATTGCA+GGG | + | chr4_4:4128694-4128713 | Msa0664850:CDS | 35.0% | |
| CTTGATATGCTTCCATTTGT+AGG | - | chr4_4:4128732-4128751 | None:intergenic | 35.0% | |
| TCATCTTCCCACAATTAGTT+TGG | + | chr4_4:4128782-4128801 | Msa0664850:CDS | 35.0% | |
| GTTCACATCCAAACTAATTG+TGG | - | chr4_4:4128793-4128812 | None:intergenic | 35.0% | |
| CTTGGTTGCATATGAATCAT+CGG | + | chr4_4:4128833-4128852 | Msa0664850:CDS | 35.0% | |
| ! | ATATGAATCATCGGTTGGAT+CGG | + | chr4_4:4128842-4128861 | Msa0664850:CDS | 35.0% |
| GTGTAACGAGTTATAACCAA+AGG | - | chr4_4:4128870-4128889 | None:intergenic | 35.0% | |
| CGTTACACAGAATTGATGAA+TGG | + | chr4_4:4128882-4128901 | Msa0664850:CDS | 35.0% | |
| TAGAATCTTTGCATCGTTCT+CGG | - | chr4_4:4128919-4128938 | None:intergenic | 35.0% | |
| ATAAAGAAGTGGCTAACATG+TGG | + | chr4_4:4128976-4128995 | Msa0664850:CDS | 35.0% | |
| CAAGTCATTGAGATTGTCAA+GGG | + | chr4_4:4129010-4129029 | Msa0664850:CDS | 35.0% | |
| CTTGGATAAGACTATTGAAG+AGG | + | chr4_4:4129040-4129059 | Msa0664850:CDS | 35.0% | |
| ! | AGTCTTATGTGTTTGGTTCA+TGG | + | chr4_4:4129114-4129133 | Msa0664850:CDS | 35.0% |
| CAACCTTTGATGAGAATCTT+TGG | + | chr4_4:4127605-4127624 | Msa0664850:CDS | 35.0% | |
| ! | AAGCTTTGGCACATTGAAAA+TGG | - | chr4_4:4127695-4127714 | None:intergenic | 35.0% |
| TGTTGACCAATTGAGAAAGT+TGG | + | chr4_4:4127870-4127889 | Msa0664850:CDS | 35.0% | |
| CGTTCAAATCCAAGAATTTG+TGG | - | chr4_4:4127918-4127937 | None:intergenic | 35.0% | |
| !! | CACTCTAAGACTTGAATGTT+AGG | - | chr4_4:4128261-4128280 | None:intergenic | 35.0% |
| AGTTGAGATTCAACAAGAAG+TGG | + | chr4_4:4128350-4128369 | Msa0664850:CDS | 35.0% | |
| !! | ACCTTTTTGATTCCATGCAA+AGG | - | chr4_4:4128474-4128493 | None:intergenic | 35.0% |
| TCTAAAGAACAAAACACCCT+TGG | + | chr4_4:4128647-4128666 | Msa0664850:CDS | 35.0% | |
| ATCACAAGTTGTTCAACAGA+AGG | - | chr4_4:4128690-4128709 | None:intergenic | 35.0% | |
| TTGAACAACTTGTGATTGCA+GGG | + | chr4_4:4128694-4128713 | Msa0664850:CDS | 35.0% | |
| CTTGATATGCTTCCATTTGT+AGG | - | chr4_4:4128732-4128751 | None:intergenic | 35.0% | |
| TCATCTTCCCACAATTAGTT+TGG | + | chr4_4:4128782-4128801 | Msa0664850:CDS | 35.0% | |
| GTTCACATCCAAACTAATTG+TGG | - | chr4_4:4128793-4128812 | None:intergenic | 35.0% | |
| CTTGGTTGCATATGAATCAT+CGG | + | chr4_4:4128833-4128852 | Msa0664850:CDS | 35.0% | |
| ! | ATATGAATCATCGGTTGGAT+CGG | + | chr4_4:4128842-4128861 | Msa0664850:CDS | 35.0% |
| GTGTAACGAGTTATAACCAA+AGG | - | chr4_4:4128870-4128889 | None:intergenic | 35.0% | |
| CGTTACACAGAATTGATGAA+TGG | + | chr4_4:4128882-4128901 | Msa0664850:CDS | 35.0% | |
| TAGAATCTTTGCATCGTTCT+CGG | - | chr4_4:4128919-4128938 | None:intergenic | 35.0% | |
| ATAAAGAAGTGGCTAACATG+TGG | + | chr4_4:4128976-4128995 | Msa0664850:CDS | 35.0% | |
| CAAGTCATTGAGATTGTCAA+GGG | + | chr4_4:4129010-4129029 | Msa0664850:CDS | 35.0% | |
| CTTGGATAAGACTATTGAAG+AGG | + | chr4_4:4129040-4129059 | Msa0664850:CDS | 35.0% | |
| ! | AGTCTTATGTGTTTGGTTCA+TGG | + | chr4_4:4129114-4129133 | Msa0664850:CDS | 35.0% |
| CACCCAAAGATTCTCATCAA+AGG | - | chr4_4:4127611-4127630 | None:intergenic | 40.0% | |
| AACCCTAGAAGAAGAGTTTG+AGG | + | chr4_4:4127645-4127664 | Msa0664850:CDS | 40.0% | |
| CTCCTCAAACTCTTCTTCTA+GGG | - | chr4_4:4127650-4127669 | None:intergenic | 40.0% | |
| GAAGAGTTTGAGGAGGAAAA+TGG | + | chr4_4:4127655-4127674 | Msa0664850:CDS | 40.0% | |
| CAATGTGCCAAAGCTTCTTA+TGG | + | chr4_4:4127699-4127718 | Msa0664850:CDS | 40.0% | |
| TCACTAGCCATAAGAAGCTT+TGG | - | chr4_4:4127709-4127728 | None:intergenic | 40.0% | |
| GTTCCACAACAAGTTGCAAT+TGG | + | chr4_4:4127742-4127761 | Msa0664850:CDS | 40.0% | |
| CAATTGGTCCCTACCATTAT+TGG | + | chr4_4:4127758-4127777 | Msa0664850:CDS | 40.0% | |
| TCTTGACGCCAATAATGGTA+GGG | - | chr4_4:4127769-4127788 | None:intergenic | 40.0% | |
| TTCTTGACGCCAATAATGGT+AGG | - | chr4_4:4127770-4127789 | None:intergenic | 40.0% | |
| AGAGTTCTTGACGCCAATAA+TGG | - | chr4_4:4127774-4127793 | None:intergenic | 40.0% | |
| AGCATGCTACCACAAATTCT+TGG | + | chr4_4:4127906-4127925 | Msa0664850:CDS | 40.0% | |
| AACAATCATCATCCACACCA+AGG | - | chr4_4:4127947-4127966 | None:intergenic | 40.0% | |
| CAAGAAGTGGATCAACAAGA+AGG | + | chr4_4:4128363-4128382 | Msa0664850:CDS | 40.0% | |
| TTAATCAAAGGGCCTTTGCA+TGG | + | chr4_4:4128459-4128478 | Msa0664850:CDS | 40.0% | |
| GCCTTTGCATGGAATCAAAA+AGG | + | chr4_4:4128470-4128489 | Msa0664850:CDS | 40.0% | |
| !! | AGGTTGGTTATGTTTTCCCA+AGG | - | chr4_4:4128534-4128553 | None:intergenic | 40.0% |
| GAAAACATAACCAACCTTCC+CGG | + | chr4_4:4128537-4128556 | Msa0664850:CDS | 40.0% | |
| TTACAAGTTTGATTCCGGGA+AGG | - | chr4_4:4128554-4128573 | None:intergenic | 40.0% | |
| AAAGAACAAAACACCCTTGG+TGG | + | chr4_4:4128650-4128669 | Msa0664850:CDS | 40.0% | |
| ATAGTGATTTCCTCCACCAA+GGG | - | chr4_4:4128666-4128685 | None:intergenic | 40.0% | |
| AATAGTGATTTCCTCCACCA+AGG | - | chr4_4:4128667-4128686 | None:intergenic | 40.0% | |
| GTTGAACAACTTGTGATTGC+AGG | + | chr4_4:4128693-4128712 | Msa0664850:CDS | 40.0% | |
| TGAACAACTTGTGATTGCAG+GGG | + | chr4_4:4128695-4128714 | Msa0664850:CDS | 40.0% | |
| GTTGCATATGAATCATCGGT+TGG | + | chr4_4:4128837-4128856 | Msa0664850:CDS | 40.0% | |
| ! | TATGAATCATCGGTTGGATC+GGG | + | chr4_4:4128843-4128862 | Msa0664850:CDS | 40.0% |
| GCAAGTCATTGAGATTGTCA+AGG | + | chr4_4:4129009-4129028 | Msa0664850:CDS | 40.0% | |
| TGTCATGAACAAGAGGAAGA+TGG | - | chr4_4:4129162-4129181 | None:intergenic | 40.0% | |
| ATGTCATCGCTTCTTTGACA+AGG | + | chr4_4:4129211-4129230 | Msa0664850:CDS | 40.0% | |
| CACCCAAAGATTCTCATCAA+AGG | - | chr4_4:4127611-4127630 | None:intergenic | 40.0% | |
| AACCCTAGAAGAAGAGTTTG+AGG | + | chr4_4:4127645-4127664 | Msa0664850:CDS | 40.0% | |
| CTCCTCAAACTCTTCTTCTA+GGG | - | chr4_4:4127650-4127669 | None:intergenic | 40.0% | |
| GAAGAGTTTGAGGAGGAAAA+TGG | + | chr4_4:4127655-4127674 | Msa0664850:CDS | 40.0% | |
| CAATGTGCCAAAGCTTCTTA+TGG | + | chr4_4:4127699-4127718 | Msa0664850:CDS | 40.0% | |
| TCACTAGCCATAAGAAGCTT+TGG | - | chr4_4:4127709-4127728 | None:intergenic | 40.0% | |
| GTTCCACAACAAGTTGCAAT+TGG | + | chr4_4:4127742-4127761 | Msa0664850:CDS | 40.0% | |
| CAATTGGTCCCTACCATTAT+TGG | + | chr4_4:4127758-4127777 | Msa0664850:CDS | 40.0% | |
| TCTTGACGCCAATAATGGTA+GGG | - | chr4_4:4127769-4127788 | None:intergenic | 40.0% | |
| TTCTTGACGCCAATAATGGT+AGG | - | chr4_4:4127770-4127789 | None:intergenic | 40.0% | |
| AGAGTTCTTGACGCCAATAA+TGG | - | chr4_4:4127774-4127793 | None:intergenic | 40.0% | |
| AGCATGCTACCACAAATTCT+TGG | + | chr4_4:4127906-4127925 | Msa0664850:CDS | 40.0% | |
| AACAATCATCATCCACACCA+AGG | - | chr4_4:4127947-4127966 | None:intergenic | 40.0% | |
| CAAGAAGTGGATCAACAAGA+AGG | + | chr4_4:4128363-4128382 | Msa0664850:CDS | 40.0% | |
| TTAATCAAAGGGCCTTTGCA+TGG | + | chr4_4:4128459-4128478 | Msa0664850:CDS | 40.0% | |
| GCCTTTGCATGGAATCAAAA+AGG | + | chr4_4:4128470-4128489 | Msa0664850:CDS | 40.0% | |
| !! | AGGTTGGTTATGTTTTCCCA+AGG | - | chr4_4:4128534-4128553 | None:intergenic | 40.0% |
| GAAAACATAACCAACCTTCC+CGG | + | chr4_4:4128537-4128556 | Msa0664850:CDS | 40.0% | |
| TTACAAGTTTGATTCCGGGA+AGG | - | chr4_4:4128554-4128573 | None:intergenic | 40.0% | |
| AAAGAACAAAACACCCTTGG+TGG | + | chr4_4:4128650-4128669 | Msa0664850:CDS | 40.0% | |
| ATAGTGATTTCCTCCACCAA+GGG | - | chr4_4:4128666-4128685 | None:intergenic | 40.0% | |
| AATAGTGATTTCCTCCACCA+AGG | - | chr4_4:4128667-4128686 | None:intergenic | 40.0% | |
| GTTGAACAACTTGTGATTGC+AGG | + | chr4_4:4128693-4128712 | Msa0664850:CDS | 40.0% | |
| TGAACAACTTGTGATTGCAG+GGG | + | chr4_4:4128695-4128714 | Msa0664850:CDS | 40.0% | |
| GTTGCATATGAATCATCGGT+TGG | + | chr4_4:4128837-4128856 | Msa0664850:CDS | 40.0% | |
| ! | TATGAATCATCGGTTGGATC+GGG | + | chr4_4:4128843-4128862 | Msa0664850:CDS | 40.0% |
| GCAAGTCATTGAGATTGTCA+AGG | + | chr4_4:4129009-4129028 | Msa0664850:CDS | 40.0% | |
| TGTCATGAACAAGAGGAAGA+TGG | - | chr4_4:4129162-4129181 | None:intergenic | 40.0% | |
| ATGTCATCGCTTCTTTGACA+AGG | + | chr4_4:4129211-4129230 | Msa0664850:CDS | 40.0% | |
| CCTCCTCAAACTCTTCTTCT+AGG | - | chr4_4:4127651-4127670 | None:intergenic | 45.0% | |
| CCTAGAAGAAGAGTTTGAGG+AGG | + | chr4_4:4127648-4127667 | Msa0664850:CDS | 45.0% | |
| !! | GGACCAATTGCAACTTGTTG+TGG | - | chr4_4:4127748-4127767 | None:intergenic | 45.0% |
| AAGTTTGATTCCGGGAAGGT+TGG | - | chr4_4:4128550-4128569 | None:intergenic | 45.0% | |
| GAAGTGGCTAACATGTGGAA+TGG | + | chr4_4:4128981-4129000 | Msa0664850:CDS | 45.0% | |
| !! | ATTGTCAAGGGTGCCATACT+TGG | + | chr4_4:4129022-4129041 | Msa0664850:CDS | 45.0% |
| GACAGAGCAAAAAGCTTGCA+AGG | - | chr4_4:4129186-4129205 | None:intergenic | 45.0% | |
| CCTCCTCAAACTCTTCTTCT+AGG | - | chr4_4:4127651-4127670 | None:intergenic | 45.0% | |
| CCTAGAAGAAGAGTTTGAGG+AGG | + | chr4_4:4127648-4127667 | Msa0664850:CDS | 45.0% | |
| !! | GGACCAATTGCAACTTGTTG+TGG | - | chr4_4:4127748-4127767 | None:intergenic | 45.0% |
| AAGTTTGATTCCGGGAAGGT+TGG | - | chr4_4:4128550-4128569 | None:intergenic | 45.0% | |
| GAAGTGGCTAACATGTGGAA+TGG | + | chr4_4:4128981-4129000 | Msa0664850:CDS | 45.0% | |
| !! | ATTGTCAAGGGTGCCATACT+TGG | + | chr4_4:4129022-4129041 | Msa0664850:CDS | 45.0% |
| GACAGAGCAAAAAGCTTGCA+AGG | - | chr4_4:4129186-4129205 | None:intergenic | 45.0% | |
| GGATTTGAACGGCGAAACCT+TGG | + | chr4_4:4127927-4127946 | Msa0664850:CDS | 50.0% | |
| GAACAAAACACCCTTGGTGG+AGG | + | chr4_4:4128653-4128672 | Msa0664850:CDS | 50.0% | |
| GCAAGGCTGTCATGAACAAG+AGG | - | chr4_4:4129169-4129188 | None:intergenic | 50.0% | |
| GGCACTAGAGCTTACATCTC+CGG | + | chr4_4:4129232-4129251 | Msa0664850:CDS | 50.0% | |
| GGATTTGAACGGCGAAACCT+TGG | + | chr4_4:4127927-4127946 | Msa0664850:CDS | 50.0% | |
| GAACAAAACACCCTTGGTGG+AGG | + | chr4_4:4128653-4128672 | Msa0664850:CDS | 50.0% | |
| GCAAGGCTGTCATGAACAAG+AGG | - | chr4_4:4129169-4129188 | None:intergenic | 50.0% | |
| GGCACTAGAGCTTACATCTC+CGG | + | chr4_4:4129232-4129251 | Msa0664850:CDS | 50.0% | |
| TGAACGGCGAAACCTTGGTG+TGG | + | chr4_4:4127932-4127951 | Msa0664850:CDS | 55.0% | |
| ATCGGTTGGATCGGGACCTT+TGG | + | chr4_4:4128851-4128870 | Msa0664850:CDS | 55.0% | |
| TGAACGGCGAAACCTTGGTG+TGG | + | chr4_4:4127932-4127951 | Msa0664850:CDS | 55.0% | |
| ATCGGTTGGATCGGGACCTT+TGG | + | chr4_4:4128851-4128870 | Msa0664850:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 4127565 | 4129265 | 4127565 | ID=Msa0664850;Name=Msa0664850 |
| chr4_4 | mRNA | 4127565 | 4129265 | 4127565 | ID=Msa0664850-mRNA-1;Parent=Msa0664850;Name=Msa0664850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|566 |
| chr4_4 | exon | 4127565 | 4129265 | 4127565 | ID=Msa0664850-mRNA-1:exon:1324;Parent=Msa0664850-mRNA-1 |
| chr4_4 | CDS | 4127565 | 4129265 | 4127565 | ID=Msa0664850-mRNA-1:cds;Parent=Msa0664850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
