Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180150 | KEH15444.1 | 81.875 | 160 | 17 | 2 | 1 | 150 | 1 | 158 | 2.99e-85 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180150 | sp|Q43839|G6PDC_SOLTU | 50.355 | 141 | 47 | 3 | 21 | 151 | 27 | 154 | 3.47e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180150 | A0A072TD32 | 81.875 | 160 | 17 | 2 | 1 | 150 | 1 | 158 | 1.43e-85 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0756480 | Msa1180150 | 0.803879 | 2.823937e-49 | -8.615850e-47 |
| Msa0213080 | Msa1180150 | 0.809276 | 2.050297e-50 | -8.615850e-47 |
| Msa1180150 | Msa1221260 | 0.805341 | 1.398521e-49 | -8.615850e-47 |
| Msa1180150 | Msa1274990 | 0.831921 | 1.268979e-55 | -8.615850e-47 |
| Msa1180150 | Msa1337340 | 0.805457 | 1.322546e-49 | -8.615850e-47 |
| Msa0525240 | Msa1180150 | 0.801283 | 9.684938e-49 | -8.615850e-47 |
| Msa0581340 | Msa1180150 | 0.808627 | 2.822309e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180150 | MtrunA17_Chr8g0341321 | 81.988 | 161 | 17 | 2 | 1 | 151 | 1 | 159 | 5.61e-85 | 259 |
| Msa1180150 | MtrunA17_Chr7g0222441 | 79.688 | 64 | 13 | 0 | 88 | 151 | 108 | 171 | 5.71e-29 | 110 |
| Msa1180150 | MtrunA17_Chr7g0271531 | 52.632 | 76 | 36 | 0 | 76 | 151 | 117 | 192 | 3.40e-22 | 91.7 |
| Msa1180150 | MtrunA17_Chr7g0228611 | 58.065 | 62 | 24 | 2 | 84 | 144 | 27 | 87 | 1.78e-15 | 72.4 |
| Msa1180150 | MtrunA17_Chr6g0458971 | 50.667 | 75 | 36 | 1 | 76 | 149 | 21 | 95 | 3.58e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180150 | AT5G13110.1 | 76.712 | 73 | 14 | 1 | 82 | 151 | 101 | 173 | 1.19e-30 | 115 |
| Msa1180150 | AT1G24280.1 | 56.481 | 108 | 34 | 3 | 57 | 151 | 69 | 176 | 3.24e-30 | 114 |
| Msa1180150 | AT5G35790.1 | 83.333 | 66 | 11 | 0 | 86 | 151 | 89 | 154 | 5.82e-30 | 114 |
| Msa1180150 | AT1G09420.2 | 56.061 | 66 | 29 | 0 | 86 | 151 | 152 | 217 | 1.34e-20 | 87.4 |
| Msa1180150 | AT1G09420.1 | 56.061 | 66 | 29 | 0 | 86 | 151 | 152 | 217 | 1.39e-20 | 87.4 |
| Msa1180150 | AT3G27300.5 | 40.800 | 125 | 71 | 3 | 22 | 145 | 22 | 144 | 1.65e-16 | 75.9 |
| Msa1180150 | AT3G27300.1 | 62.500 | 64 | 22 | 2 | 83 | 145 | 28 | 90 | 2.12e-16 | 75.5 |
| Msa1180150 | AT3G27300.3 | 62.500 | 64 | 22 | 2 | 83 | 145 | 28 | 90 | 2.12e-16 | 75.5 |
| Msa1180150 | AT3G27300.2 | 62.500 | 64 | 22 | 2 | 83 | 145 | 28 | 90 | 2.12e-16 | 75.5 |
| Msa1180150 | AT3G27300.4 | 62.500 | 64 | 22 | 2 | 83 | 145 | 99 | 161 | 2.47e-16 | 75.1 |
| Msa1180150 | AT5G40760.2 | 61.017 | 59 | 22 | 1 | 88 | 145 | 32 | 90 | 3.77e-15 | 71.6 |
| Msa1180150 | AT5G40760.1 | 61.017 | 59 | 22 | 1 | 88 | 145 | 32 | 90 | 3.77e-15 | 71.6 |
Find 28 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAACATTGTCACATCTTA+TGG | 0.175931 | 8_1:+13932182 | Msa1180150:CDS |
| CAGCCAAACCTGCATAAATA+TGG | 0.206481 | 8_1:-13933007 | None:intergenic |
| TTGAGGCTGGCCATCTTCTT+TGG | 0.226294 | 8_1:-13933042 | None:intergenic |
| TAACTCTTCATCAGTCATTT+TGG | 0.241437 | 8_1:-13933364 | None:intergenic |
| ATAACTGTTGTTGGAGCATC+TGG | 0.335491 | 8_1:+13933122 | Msa1180150:CDS |
| TTCCCATATTTATGCAGGTT+TGG | 0.346066 | 8_1:+13933004 | Msa1180150:CDS |
| AACCTTAGTATAACTGTTGT+TGG | 0.383313 | 8_1:+13933113 | Msa1180150:CDS |
| CAATTCTGCATGTTAAAGTC+TGG | 0.435685 | 8_1:-13933401 | None:intergenic |
| GATCCTGTGGATTCAGAGTC+TGG | 0.438607 | 8_1:-13933089 | None:intergenic |
| TGTTGCATGGCAAGTGTACT+AGG | 0.447420 | 8_1:+13932152 | None:intergenic |
| ATCCTTCAACTTGTTGAGGC+TGG | 0.454958 | 8_1:-13933055 | None:intergenic |
| TGAATTTAGTAGTGCAAGAA+AGG | 0.465543 | 8_1:-13932250 | None:intergenic |
| ATACATTCCCATATTTATGC+AGG | 0.466111 | 8_1:+13932999 | Msa1180150:CDS |
| AGCCAAACCTGCATAAATAT+GGG | 0.472751 | 8_1:-13933006 | None:intergenic |
| AGGTTTGGCTGAAAGTTCAT+TGG | 0.476222 | 8_1:+13933019 | Msa1180150:CDS |
| AAATGACTGATGAAGAGTTA+AGG | 0.494086 | 8_1:+13933367 | Msa1180150:CDS |
| AACAACAGTTATACTAAGGT+TGG | 0.501460 | 8_1:-13933111 | None:intergenic |
| TAGAAAAGAGCAAAGAGTGC+TGG | 0.507946 | 8_1:-13933170 | None:intergenic |
| CTCCAACAACAGTTATACTA+AGG | 0.511684 | 8_1:-13933115 | None:intergenic |
| AACAATCCTTCAACTTGTTG+AGG | 0.519106 | 8_1:-13933059 | None:intergenic |
| AGTTCATTGGCCAAAGAAGA+TGG | 0.524177 | 8_1:+13933032 | Msa1180150:CDS |
| TATACTAAGGTTGGATCCTG+TGG | 0.540104 | 8_1:-13933102 | None:intergenic |
| GGCCAGCCTCAACAAGTTGA+AGG | 0.543781 | 8_1:+13933053 | Msa1180150:CDS |
| GTGAATTTAGTACAAAGTTG+TGG | 0.561013 | 8_1:-13932218 | None:intergenic |
| TTATTGTGTTTGGATATGCT+CGG | 0.565032 | 8_1:+13933340 | Msa1180150:CDS |
| TTGCCAGACTCTGAATCCAC+AGG | 0.579910 | 8_1:+13933086 | Msa1180150:CDS |
| CTATGAAGATTGGTTACCCG+AGG | 0.607456 | 8_1:+13933190 | Msa1180150:CDS |
| TAACATGCAGAATTGACAAG+AGG | 0.611745 | 8_1:+13933409 | Msa1180150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTCATTTGTTTTGTAAA+TGG | + | chr8_1:13932283-13932302 | Msa1180150:intron | 15.0% |
| !!! | TATATTACAATAGTTCTTTT+AGG | + | chr8_1:13932405-13932424 | Msa1180150:intron | 15.0% |
| !!! | AAATTCATTTGTTTTGTAAA+TGG | + | chr8_1:13932283-13932302 | Msa1180150:intron | 15.0% |
| !!! | TATATTACAATAGTTCTTTT+AGG | + | chr8_1:13932405-13932424 | Msa1180150:intron | 15.0% |
| !!! | TATGATATCATACTTTTAAC+CGG | - | chr8_1:13932906-13932925 | None:intergenic | 20.0% |
| !! | AAATCAAATGTTTGTCTAAA+AGG | + | chr8_1:13932968-13932987 | Msa1180150:intron | 20.0% |
| !! | CTGTATATGATTTAAATGTT+TGG | + | chr8_1:13933272-13933291 | Msa1180150:intron | 20.0% |
| !!! | TATGATATCATACTTTTAAC+CGG | - | chr8_1:13932906-13932925 | None:intergenic | 20.0% |
| !! | AAATCAAATGTTTGTCTAAA+AGG | + | chr8_1:13932968-13932987 | Msa1180150:intron | 20.0% |
| !! | CTGTATATGATTTAAATGTT+TGG | + | chr8_1:13933272-13933291 | Msa1180150:intron | 20.0% |
| !!! | ACAATAGTTCTTTTAGGATT+TGG | + | chr8_1:13932411-13932430 | Msa1180150:intron | 25.0% |
| !!! | CAATAGTTCTTTTAGGATTT+GGG | + | chr8_1:13932412-13932431 | Msa1180150:intron | 25.0% |
| !! | ATCATCTTAGAATTTGAGTT+AGG | + | chr8_1:13932642-13932661 | Msa1180150:intron | 25.0% |
| ! | TAAACATGAGTTAATAAGTG+GGG | - | chr8_1:13932712-13932731 | None:intergenic | 25.0% |
| ! | CTAAACATGAGTTAATAAGT+GGG | - | chr8_1:13932713-13932732 | None:intergenic | 25.0% |
| !!! | AAGCCTATTTTTGTTTTGTT+CGG | + | chr8_1:13932792-13932811 | Msa1180150:intron | 25.0% |
| ! | TTGTGAACAAATAAATGAGT+CGG | - | chr8_1:13932846-13932865 | None:intergenic | 25.0% |
| !! | ATGCAGAATTTTATTGTGTT+TGG | + | chr8_1:13933330-13933349 | Msa1180150:intron | 25.0% |
| !!! | ACAATAGTTCTTTTAGGATT+TGG | + | chr8_1:13932411-13932430 | Msa1180150:intron | 25.0% |
| !!! | CAATAGTTCTTTTAGGATTT+GGG | + | chr8_1:13932412-13932431 | Msa1180150:intron | 25.0% |
| !! | ATCATCTTAGAATTTGAGTT+AGG | + | chr8_1:13932642-13932661 | Msa1180150:intron | 25.0% |
| ! | TAAACATGAGTTAATAAGTG+GGG | - | chr8_1:13932712-13932731 | None:intergenic | 25.0% |
| ! | CTAAACATGAGTTAATAAGT+GGG | - | chr8_1:13932713-13932732 | None:intergenic | 25.0% |
| !!! | AAGCCTATTTTTGTTTTGTT+CGG | + | chr8_1:13932792-13932811 | Msa1180150:intron | 25.0% |
| ! | TTGTGAACAAATAAATGAGT+CGG | - | chr8_1:13932846-13932865 | None:intergenic | 25.0% |
| !! | ATGCAGAATTTTATTGTGTT+TGG | + | chr8_1:13933330-13933349 | Msa1180150:intron | 25.0% |
| TCAAACATTGTCACATCTTA+TGG | + | chr8_1:13932182-13932201 | Msa1180150:CDS | 30.0% | |
| GTGAATTTAGTACAAAGTTG+TGG | - | chr8_1:13932221-13932240 | None:intergenic | 30.0% | |
| TGAATTTAGTAGTGCAAGAA+AGG | - | chr8_1:13932253-13932272 | None:intergenic | 30.0% | |
| ! | ATTCTGCTCTTTCTAACTTT+TGG | + | chr8_1:13932311-13932330 | Msa1180150:intron | 30.0% |
| GTACTTTACATGATCACATA+TGG | - | chr8_1:13932351-13932370 | None:intergenic | 30.0% | |
| !! | CTTACAAGCTGATTTTGTAA+GGG | - | chr8_1:13932678-13932697 | None:intergenic | 30.0% |
| !! | TCTTACAAGCTGATTTTGTA+AGG | - | chr8_1:13932679-13932698 | None:intergenic | 30.0% |
| CCTAAACATGAGTTAATAAG+TGG | - | chr8_1:13932714-13932733 | None:intergenic | 30.0% | |
| CCACTTATTAACTCATGTTT+AGG | + | chr8_1:13932711-13932730 | Msa1180150:intron | 30.0% | |
| CAACCGAACAAAACAAAAAT+AGG | - | chr8_1:13932798-13932817 | None:intergenic | 30.0% | |
| ATACATTCCCATATTTATGC+AGG | + | chr8_1:13932999-13933018 | Msa1180150:CDS | 30.0% | |
| AACAACAGTTATACTAAGGT+TGG | - | chr8_1:13933114-13933133 | None:intergenic | 30.0% | |
| AACCTTAGTATAACTGTTGT+TGG | + | chr8_1:13933113-13933132 | Msa1180150:CDS | 30.0% | |
| !! | GAAAAATCTTCTTTTTGGCA+AGG | - | chr8_1:13933151-13933170 | None:intergenic | 30.0% |
| ! | TGCTGGAAAAATCTTCTTTT+TGG | - | chr8_1:13933156-13933175 | None:intergenic | 30.0% |
| ! | TTGCTCTTTTCTATGAAGAT+TGG | + | chr8_1:13933180-13933199 | Msa1180150:CDS | 30.0% |
| ! | TGTTTGGAACATTATATCTG+AGG | + | chr8_1:13933288-13933307 | Msa1180150:intron | 30.0% |
| TTATTGTGTTTGGATATGCT+CGG | + | chr8_1:13933340-13933359 | Msa1180150:CDS | 30.0% | |
| ! | TAACTCTTCATCAGTCATTT+TGG | - | chr8_1:13933367-13933386 | None:intergenic | 30.0% |
| AAATGACTGATGAAGAGTTA+AGG | + | chr8_1:13933367-13933386 | Msa1180150:CDS | 30.0% | |
| TCAAACATTGTCACATCTTA+TGG | + | chr8_1:13932182-13932201 | Msa1180150:CDS | 30.0% | |
| GTGAATTTAGTACAAAGTTG+TGG | - | chr8_1:13932221-13932240 | None:intergenic | 30.0% | |
| TGAATTTAGTAGTGCAAGAA+AGG | - | chr8_1:13932253-13932272 | None:intergenic | 30.0% | |
| ! | ATTCTGCTCTTTCTAACTTT+TGG | + | chr8_1:13932311-13932330 | Msa1180150:intron | 30.0% |
| GTACTTTACATGATCACATA+TGG | - | chr8_1:13932351-13932370 | None:intergenic | 30.0% | |
| !! | CTTACAAGCTGATTTTGTAA+GGG | - | chr8_1:13932678-13932697 | None:intergenic | 30.0% |
| !! | TCTTACAAGCTGATTTTGTA+AGG | - | chr8_1:13932679-13932698 | None:intergenic | 30.0% |
| CCTAAACATGAGTTAATAAG+TGG | - | chr8_1:13932714-13932733 | None:intergenic | 30.0% | |
| CCACTTATTAACTCATGTTT+AGG | + | chr8_1:13932711-13932730 | Msa1180150:intron | 30.0% | |
| CAACCGAACAAAACAAAAAT+AGG | - | chr8_1:13932798-13932817 | None:intergenic | 30.0% | |
| ATACATTCCCATATTTATGC+AGG | + | chr8_1:13932999-13933018 | Msa1180150:CDS | 30.0% | |
| AACAACAGTTATACTAAGGT+TGG | - | chr8_1:13933114-13933133 | None:intergenic | 30.0% | |
| AACCTTAGTATAACTGTTGT+TGG | + | chr8_1:13933113-13933132 | Msa1180150:CDS | 30.0% | |
| !! | GAAAAATCTTCTTTTTGGCA+AGG | - | chr8_1:13933151-13933170 | None:intergenic | 30.0% |
| ! | TGCTGGAAAAATCTTCTTTT+TGG | - | chr8_1:13933156-13933175 | None:intergenic | 30.0% |
| ! | TTGCTCTTTTCTATGAAGAT+TGG | + | chr8_1:13933180-13933199 | Msa1180150:CDS | 30.0% |
| ! | TGTTTGGAACATTATATCTG+AGG | + | chr8_1:13933288-13933307 | Msa1180150:intron | 30.0% |
| TTATTGTGTTTGGATATGCT+CGG | + | chr8_1:13933340-13933359 | Msa1180150:CDS | 30.0% | |
| ! | TAACTCTTCATCAGTCATTT+TGG | - | chr8_1:13933367-13933386 | None:intergenic | 30.0% |
| AAATGACTGATGAAGAGTTA+AGG | + | chr8_1:13933367-13933386 | Msa1180150:CDS | 30.0% | |
| !!! | GTTCTTTTAGGATTTGGGTT+AGG | + | chr8_1:13932417-13932436 | Msa1180150:intron | 35.0% |
| !!! | CTTATAAGCTGGTTTTGCAA+GGG | - | chr8_1:13932453-13932472 | None:intergenic | 35.0% |
| !!! | TCTTATAAGCTGGTTTTGCA+AGG | - | chr8_1:13932454-13932473 | None:intergenic | 35.0% |
| AATGATATAAGGCATGGAGA+CGG | - | chr8_1:13932503-13932522 | None:intergenic | 35.0% | |
| ACGTTGAATGATATAAGGCA+TGG | - | chr8_1:13932509-13932528 | None:intergenic | 35.0% | |
| ATGCCTTATATCATTCAACG+TGG | + | chr8_1:13932508-13932527 | Msa1180150:intron | 35.0% | |
| TGCCTTATATCATTCAACGT+GGG | + | chr8_1:13932509-13932528 | Msa1180150:intron | 35.0% | |
| !!! | TGGCCAAACTGATTTTAGTT+CGG | + | chr8_1:13932612-13932631 | Msa1180150:intron | 35.0% |
| ! | GATTTTGTAAGGGTTGAGTT+AGG | - | chr8_1:13932668-13932687 | None:intergenic | 35.0% |
| ! | ATTTGTTAAGAGTCCCGTAT+CGG | - | chr8_1:13932748-13932767 | None:intergenic | 35.0% |
| TAAATGAGTCGGCAACATAT+AGG | - | chr8_1:13932835-13932854 | None:intergenic | 35.0% | |
| TTGACTACTAGTGCAATATC+CGG | + | chr8_1:13932884-13932903 | Msa1180150:intron | 35.0% | |
| TTCCCATATTTATGCAGGTT+TGG | + | chr8_1:13933004-13933023 | Msa1180150:CDS | 35.0% | |
| AGCCAAACCTGCATAAATAT+GGG | - | chr8_1:13933009-13933028 | None:intergenic | 35.0% | |
| !! | AACAATCCTTCAACTTGTTG+AGG | - | chr8_1:13933062-13933081 | None:intergenic | 35.0% |
| CTCCAACAACAGTTATACTA+AGG | - | chr8_1:13933118-13933137 | None:intergenic | 35.0% | |
| TACTATCACAATTCAGACCT+CGG | - | chr8_1:13933210-13933229 | None:intergenic | 35.0% | |
| CAATTCTGCATGTTAAAGTC+TGG | - | chr8_1:13933404-13933423 | None:intergenic | 35.0% | |
| TAACATGCAGAATTGACAAG+AGG | + | chr8_1:13933409-13933428 | Msa1180150:CDS | 35.0% | |
| !!! | GTTCTTTTAGGATTTGGGTT+AGG | + | chr8_1:13932417-13932436 | Msa1180150:intron | 35.0% |
| !!! | CTTATAAGCTGGTTTTGCAA+GGG | - | chr8_1:13932453-13932472 | None:intergenic | 35.0% |
| !!! | TCTTATAAGCTGGTTTTGCA+AGG | - | chr8_1:13932454-13932473 | None:intergenic | 35.0% |
| AATGATATAAGGCATGGAGA+CGG | - | chr8_1:13932503-13932522 | None:intergenic | 35.0% | |
| ACGTTGAATGATATAAGGCA+TGG | - | chr8_1:13932509-13932528 | None:intergenic | 35.0% | |
| ATGCCTTATATCATTCAACG+TGG | + | chr8_1:13932508-13932527 | Msa1180150:intron | 35.0% | |
| TGCCTTATATCATTCAACGT+GGG | + | chr8_1:13932509-13932528 | Msa1180150:intron | 35.0% | |
| !!! | TGGCCAAACTGATTTTAGTT+CGG | + | chr8_1:13932612-13932631 | Msa1180150:intron | 35.0% |
| ! | GATTTTGTAAGGGTTGAGTT+AGG | - | chr8_1:13932668-13932687 | None:intergenic | 35.0% |
| ! | ATTTGTTAAGAGTCCCGTAT+CGG | - | chr8_1:13932748-13932767 | None:intergenic | 35.0% |
| TAAATGAGTCGGCAACATAT+AGG | - | chr8_1:13932835-13932854 | None:intergenic | 35.0% | |
| TTGACTACTAGTGCAATATC+CGG | + | chr8_1:13932884-13932903 | Msa1180150:intron | 35.0% | |
| TTCCCATATTTATGCAGGTT+TGG | + | chr8_1:13933004-13933023 | Msa1180150:CDS | 35.0% | |
| AGCCAAACCTGCATAAATAT+GGG | - | chr8_1:13933009-13933028 | None:intergenic | 35.0% | |
| !! | AACAATCCTTCAACTTGTTG+AGG | - | chr8_1:13933062-13933081 | None:intergenic | 35.0% |
| CTCCAACAACAGTTATACTA+AGG | - | chr8_1:13933118-13933137 | None:intergenic | 35.0% | |
| TACTATCACAATTCAGACCT+CGG | - | chr8_1:13933210-13933229 | None:intergenic | 35.0% | |
| CAATTCTGCATGTTAAAGTC+TGG | - | chr8_1:13933404-13933423 | None:intergenic | 35.0% | |
| TAACATGCAGAATTGACAAG+AGG | + | chr8_1:13933409-13933428 | Msa1180150:CDS | 35.0% | |
| !! | GGTTTTGCAAGGGTTGATTT+AGG | - | chr8_1:13932443-13932462 | None:intergenic | 40.0% |
| GCAGTTCTCATCTTATAAGC+TGG | - | chr8_1:13932464-13932483 | None:intergenic | 40.0% | |
| ATGATATAAGGCATGGAGAC+GGG | - | chr8_1:13932502-13932521 | None:intergenic | 40.0% | |
| GCCTTATATCATTCAACGTG+GGG | + | chr8_1:13932510-13932529 | Msa1180150:intron | 40.0% | |
| TCCCCACGTTGAATGATATA+AGG | - | chr8_1:13932514-13932533 | None:intergenic | 40.0% | |
| ATACTTCCTACTTCCAAGAC+TGG | + | chr8_1:13932541-13932560 | Msa1180150:intron | 40.0% | |
| GAGCCGAACTAAAATCAGTT+TGG | - | chr8_1:13932618-13932637 | None:intergenic | 40.0% | |
| !!! | AACTGATTTTAGTTCGGCTC+TGG | + | chr8_1:13932618-13932637 | Msa1180150:intron | 40.0% |
| CAGCCAAACCTGCATAAATA+TGG | - | chr8_1:13933010-13933029 | None:intergenic | 40.0% | |
| AGGTTTGGCTGAAAGTTCAT+TGG | + | chr8_1:13933019-13933038 | Msa1180150:CDS | 40.0% | |
| AGTTCATTGGCCAAAGAAGA+TGG | + | chr8_1:13933032-13933051 | Msa1180150:CDS | 40.0% | |
| TATACTAAGGTTGGATCCTG+TGG | - | chr8_1:13933105-13933124 | None:intergenic | 40.0% | |
| ! | ATAACTGTTGTTGGAGCATC+TGG | + | chr8_1:13933122-13933141 | Msa1180150:CDS | 40.0% |
| ! | TAGAAAAGAGCAAAGAGTGC+TGG | - | chr8_1:13933173-13933192 | None:intergenic | 40.0% |
| ACTATCACAATTCAGACCTC+GGG | - | chr8_1:13933209-13933228 | None:intergenic | 40.0% | |
| !! | GGTTTTGCAAGGGTTGATTT+AGG | - | chr8_1:13932443-13932462 | None:intergenic | 40.0% |
| GCAGTTCTCATCTTATAAGC+TGG | - | chr8_1:13932464-13932483 | None:intergenic | 40.0% | |
| ATGATATAAGGCATGGAGAC+GGG | - | chr8_1:13932502-13932521 | None:intergenic | 40.0% | |
| GCCTTATATCATTCAACGTG+GGG | + | chr8_1:13932510-13932529 | Msa1180150:intron | 40.0% | |
| TCCCCACGTTGAATGATATA+AGG | - | chr8_1:13932514-13932533 | None:intergenic | 40.0% | |
| ATACTTCCTACTTCCAAGAC+TGG | + | chr8_1:13932541-13932560 | Msa1180150:intron | 40.0% | |
| GAGCCGAACTAAAATCAGTT+TGG | - | chr8_1:13932618-13932637 | None:intergenic | 40.0% | |
| !!! | AACTGATTTTAGTTCGGCTC+TGG | + | chr8_1:13932618-13932637 | Msa1180150:intron | 40.0% |
| CAGCCAAACCTGCATAAATA+TGG | - | chr8_1:13933010-13933029 | None:intergenic | 40.0% | |
| AGGTTTGGCTGAAAGTTCAT+TGG | + | chr8_1:13933019-13933038 | Msa1180150:CDS | 40.0% | |
| AGTTCATTGGCCAAAGAAGA+TGG | + | chr8_1:13933032-13933051 | Msa1180150:CDS | 40.0% | |
| TATACTAAGGTTGGATCCTG+TGG | - | chr8_1:13933105-13933124 | None:intergenic | 40.0% | |
| ! | ATAACTGTTGTTGGAGCATC+TGG | + | chr8_1:13933122-13933141 | Msa1180150:CDS | 40.0% |
| ! | TAGAAAAGAGCAAAGAGTGC+TGG | - | chr8_1:13933173-13933192 | None:intergenic | 40.0% |
| ACTATCACAATTCAGACCTC+GGG | - | chr8_1:13933209-13933228 | None:intergenic | 40.0% | |
| ! | AGACGGGTTTATAAGTCTGG+GGG | - | chr8_1:13932486-13932505 | None:intergenic | 45.0% |
| ! | GAGACGGGTTTATAAGTCTG+GGG | - | chr8_1:13932487-13932506 | None:intergenic | 45.0% |
| ! | GGAGACGGGTTTATAAGTCT+GGG | - | chr8_1:13932488-13932507 | None:intergenic | 45.0% |
| ! | TGGAGACGGGTTTATAAGTC+TGG | - | chr8_1:13932489-13932508 | None:intergenic | 45.0% |
| ! | AGGCCTTATCTCATCCGATA+CGG | + | chr8_1:13932731-13932750 | Msa1180150:intron | 45.0% |
| !! | ATCCTTCAACTTGTTGAGGC+TGG | - | chr8_1:13933058-13933077 | None:intergenic | 45.0% |
| ! | CTATGAAGATTGGTTACCCG+AGG | + | chr8_1:13933190-13933209 | Msa1180150:CDS | 45.0% |
| ! | AGACGGGTTTATAAGTCTGG+GGG | - | chr8_1:13932486-13932505 | None:intergenic | 45.0% |
| ! | GAGACGGGTTTATAAGTCTG+GGG | - | chr8_1:13932487-13932506 | None:intergenic | 45.0% |
| ! | GGAGACGGGTTTATAAGTCT+GGG | - | chr8_1:13932488-13932507 | None:intergenic | 45.0% |
| ! | TGGAGACGGGTTTATAAGTC+TGG | - | chr8_1:13932489-13932508 | None:intergenic | 45.0% |
| ! | AGGCCTTATCTCATCCGATA+CGG | + | chr8_1:13932731-13932750 | Msa1180150:intron | 45.0% |
| !! | ATCCTTCAACTTGTTGAGGC+TGG | - | chr8_1:13933058-13933077 | None:intergenic | 45.0% |
| ! | CTATGAAGATTGGTTACCCG+AGG | + | chr8_1:13933190-13933209 | Msa1180150:CDS | 45.0% |
| GGATGTCCAGTCTTGGAAGT+AGG | - | chr8_1:13932550-13932569 | None:intergenic | 50.0% | |
| CACAAGTGGTCCGATAGAAG+TGG | + | chr8_1:13932579-13932598 | Msa1180150:intron | 50.0% | |
| AATCAGTTTGGCCACCCCAT+CGG | - | chr8_1:13932606-13932625 | None:intergenic | 50.0% | |
| ! | GGCCTTATCTCATCCGATAC+GGG | + | chr8_1:13932732-13932751 | Msa1180150:intron | 50.0% |
| GTCCCGTATCGGATGAGATA+AGG | - | chr8_1:13932737-13932756 | None:intergenic | 50.0% | |
| ! | TTGAGGCTGGCCATCTTCTT+TGG | - | chr8_1:13933045-13933064 | None:intergenic | 50.0% |
| TTGCCAGACTCTGAATCCAC+AGG | + | chr8_1:13933086-13933105 | Msa1180150:CDS | 50.0% | |
| GATCCTGTGGATTCAGAGTC+TGG | - | chr8_1:13933092-13933111 | None:intergenic | 50.0% | |
| GGATGTCCAGTCTTGGAAGT+AGG | - | chr8_1:13932550-13932569 | None:intergenic | 50.0% | |
| CACAAGTGGTCCGATAGAAG+TGG | + | chr8_1:13932579-13932598 | Msa1180150:intron | 50.0% | |
| AATCAGTTTGGCCACCCCAT+CGG | - | chr8_1:13932606-13932625 | None:intergenic | 50.0% | |
| ! | GGCCTTATCTCATCCGATAC+GGG | + | chr8_1:13932732-13932751 | Msa1180150:intron | 50.0% |
| GTCCCGTATCGGATGAGATA+AGG | - | chr8_1:13932737-13932756 | None:intergenic | 50.0% | |
| ! | TTGAGGCTGGCCATCTTCTT+TGG | - | chr8_1:13933045-13933064 | None:intergenic | 50.0% |
| TTGCCAGACTCTGAATCCAC+AGG | + | chr8_1:13933086-13933105 | Msa1180150:CDS | 50.0% | |
| GATCCTGTGGATTCAGAGTC+TGG | - | chr8_1:13933092-13933111 | None:intergenic | 50.0% | |
| ! | ACGCTCTGGATGTCCAGTCT+TGG | - | chr8_1:13932557-13932576 | None:intergenic | 55.0% |
| CATCCAGAGCGTGACACAAG+TGG | + | chr8_1:13932565-13932584 | Msa1180150:intron | 55.0% | |
| TCCGATAGAAGTGGCCCGAT+GGG | + | chr8_1:13932588-13932607 | Msa1180150:intron | 55.0% | |
| ATCAGTTTGGCCACCCCATC+GGG | - | chr8_1:13932605-13932624 | None:intergenic | 55.0% | |
| ! | GGCCAGCCTCAACAAGTTGA+AGG | + | chr8_1:13933053-13933072 | Msa1180150:CDS | 55.0% |
| ! | ACGCTCTGGATGTCCAGTCT+TGG | - | chr8_1:13932557-13932576 | None:intergenic | 55.0% |
| CATCCAGAGCGTGACACAAG+TGG | + | chr8_1:13932565-13932584 | Msa1180150:intron | 55.0% | |
| TCCGATAGAAGTGGCCCGAT+GGG | + | chr8_1:13932588-13932607 | Msa1180150:intron | 55.0% | |
| ATCAGTTTGGCCACCCCATC+GGG | - | chr8_1:13932605-13932624 | None:intergenic | 55.0% | |
| ! | GGCCAGCCTCAACAAGTTGA+AGG | + | chr8_1:13933053-13933072 | Msa1180150:CDS | 55.0% |
| GGACCACTTGTGTCACGCTC+TGG | - | chr8_1:13932571-13932590 | None:intergenic | 60.0% | |
| GTCCGATAGAAGTGGCCCGA+TGG | + | chr8_1:13932587-13932606 | Msa1180150:intron | 60.0% | |
| CCCCATCGGGCCACTTCTAT+CGG | - | chr8_1:13932592-13932611 | None:intergenic | 60.0% | |
| CCGATAGAAGTGGCCCGATG+GGG | + | chr8_1:13932589-13932608 | Msa1180150:intron | 60.0% | |
| ATAGAAGTGGCCCGATGGGG+TGG | + | chr8_1:13932592-13932611 | Msa1180150:intron | 60.0% | |
| GGACCACTTGTGTCACGCTC+TGG | - | chr8_1:13932571-13932590 | None:intergenic | 60.0% | |
| GTCCGATAGAAGTGGCCCGA+TGG | + | chr8_1:13932587-13932606 | Msa1180150:intron | 60.0% | |
| CCCCATCGGGCCACTTCTAT+CGG | - | chr8_1:13932592-13932611 | None:intergenic | 60.0% | |
| CCGATAGAAGTGGCCCGATG+GGG | + | chr8_1:13932589-13932608 | Msa1180150:intron | 60.0% | |
| ATAGAAGTGGCCCGATGGGG+TGG | + | chr8_1:13932592-13932611 | Msa1180150:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 13932158 | 13933434 | 13932158 | ID=Msa1180150;Name=Msa1180150 |
| chr8_1 | mRNA | 13932158 | 13933434 | 13932158 | ID=Msa1180150-mRNA-1;Parent=Msa1180150;Name=Msa1180150-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|0.5|0.33|3|0|151 |
| chr8_1 | exon | 13932158 | 13932292 | 13932158 | ID=Msa1180150-mRNA-1:exon:5100;Parent=Msa1180150-mRNA-1 |
| chr8_1 | exon | 13932990 | 13933211 | 13932990 | ID=Msa1180150-mRNA-1:exon:5101;Parent=Msa1180150-mRNA-1 |
| chr8_1 | exon | 13933336 | 13933434 | 13933336 | ID=Msa1180150-mRNA-1:exon:5102;Parent=Msa1180150-mRNA-1 |
| chr8_1 | CDS | 13932158 | 13932292 | 13932158 | ID=Msa1180150-mRNA-1:cds;Parent=Msa1180150-mRNA-1 |
| chr8_1 | CDS | 13932990 | 13933211 | 13932990 | ID=Msa1180150-mRNA-1:cds;Parent=Msa1180150-mRNA-1 |
| chr8_1 | CDS | 13933336 | 13933434 | 13933336 | ID=Msa1180150-mRNA-1:cds;Parent=Msa1180150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
