AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756480 MtrunA17_Chr5g0401451 98.571 630 9 0 1 630 1 630 0.0 1286
Msa0756480 MtrunA17_Chr4g0053841 70.443 609 160 9 28 630 1 595 0.0 854
Msa0756480 MtrunA17_Chr4g0010091 41.531 614 317 8 6 606 1 585 1.97e-166 489
Msa0756480 MtrunA17_Chr1g0195911 41.941 639 299 17 25 630 22 621 5.86e-158 467
Msa0756480 MtrunA17_Chr7g0268781 40.312 640 316 14 25 630 22 629 2.36e-153 456
Msa0756480 MtrunA17_Chr5g0432861 39.094 596 297 7 24 606 9 551 4.52e-146 435
Msa0756480 MtrunA17_Chr3g0108331 40.843 617 299 12 24 630 8 568 2.19e-145 433
Msa0756480 MtrunA17_Chr7g0245201 41.531 614 311 17 35 630 57 640 6.72e-143 429
Msa0756480 MtrunA17_Chr4g0050021 38.527 584 288 8 29 551 33 606 3.13e-132 403
Msa0756480 MtrunA17_Chr2g0279481 36.949 590 297 7 28 551 32 612 2.88e-126 388
Msa0756480 MtrunA17_Chr2g0303541 38.113 551 309 11 29 551 15 561 3.17e-126 387
Msa0756480 MtrunA17_Chr8g0382231 36.269 579 301 11 10 551 19 566 6.17e-121 372
Msa0756480 MtrunA17_Chr2g0285511 35.636 550 299 10 34 536 20 561 7.46e-115 356
Msa0756480 MtrunA17_Chr2g0320691 34.872 585 342 13 24 576 7 584 6.02e-114 354
Msa0756480 MtrunA17_Chr8g0374011 34.360 617 327 14 24 567 1 612 4.70e-113 353
Msa0756480 MtrunA17_Chr1g0207461 38.413 479 258 11 37 493 25 488 1.47e-103 327
Msa0756480 MtrunA17_Chr1g0181181 35.306 490 269 7 34 499 20 485 2.50e-103 325
Msa0756480 MtrunA17_Chr5g0401341 39.149 470 263 9 37 493 24 483 1.47e-102 325
Msa0756480 MtrunA17_Chr1g0150191 38.347 472 267 11 36 491 23 486 3.81e-101 320
Msa0756480 MtrunA17_Chr5g0412591 37.476 515 240 11 36 505 22 499 5.16e-100 317
Msa0756480 MtrunA17_Chr1g0199631 36.674 469 260 7 58 500 8 465 4.61e-98 311
Msa0756480 MtrunA17_Chr4g0076521 35.054 465 284 7 36 493 22 475 4.52e-93 299
Msa0756480 MtrunA17_Chr8g0367891 35.236 508 271 12 43 519 29 509 9.77e-88 285
Msa0756480 MtrunA17_Chr2g0290741 35.000 460 275 7 39 493 25 465 2.13e-85 278
Msa0756480 MtrunA17_Chr1g0191711 31.181 542 322 12 26 554 44 547 6.78e-81 265
Msa0756480 MtrunA17_Chr1g0206621 70.073 137 39 1 47 181 75 211 1.98e-61 204
Msa0756480 MtrunA17_Chr4g0003891 39.362 282 152 4 219 494 46 314 1.82e-58 203
Msa0756480 MtrunA17_Chr2g0332281 36.119 335 187 6 219 544 24 340 2.58e-55 194
Msa0756480 MtrunA17_Chr4g0023801 27.223 551 332 19 43 558 11 527 4.51e-49 179
Msa0756480 MtrunA17_Chr4g0037661 25.370 540 344 15 43 551 6 517 2.74e-41 157
Msa0756480 MtrunA17_Chr1g0163311 25.801 562 329 20 43 562 6 521 2.35e-38 149
Msa0756480 MtrunA17_Chr2g0280541 25.799 407 250 13 107 495 2 374 3.25e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756480 AT5G67385.1 68.013 619 179 8 16 630 1 604 0.0 827
Msa0756480 AT5G67385.4 67.944 574 165 8 61 630 1 559 0.0 759
Msa0756480 AT5G67385.5 67.944 574 165 8 61 630 1 559 0.0 759
Msa0756480 AT5G67385.2 67.944 574 165 8 61 630 1 559 0.0 759
Msa0756480 AT5G67385.3 67.944 574 165 8 61 630 1 559 0.0 759
Msa0756480 AT3G49970.1 54.966 584 184 15 52 630 6 515 0.0 584
Msa0756480 AT3G49970.2 54.966 584 184 15 52 630 6 515 0.0 584
Msa0756480 AT5G48800.1 44.850 602 276 12 20 606 22 582 8.95e-164 482
Msa0756480 AT2G30520.1 40.675 622 312 10 24 630 14 593 2.32e-151 450
Msa0756480 AT1G03010.1 40.524 649 309 15 24 630 21 634 1.15e-149 447
Msa0756480 AT1G03010.2 40.694 634 300 14 39 630 8 607 2.27e-147 440
Msa0756480 AT1G03010.3 40.694 634 300 14 39 630 34 633 3.25e-147 441
Msa0756480 AT2G47860.1 42.986 556 270 12 25 551 23 560 1.17e-143 431
Msa0756480 AT2G47860.3 41.278 579 270 13 25 551 23 583 2.94e-138 418
Msa0756480 AT3G08570.1 42.589 533 278 13 35 551 30 550 4.91e-134 406
Msa0756480 AT2G30520.2 39.932 586 295 10 60 630 2 545 6.96e-133 400
Msa0756480 AT2G30520.3 39.932 586 295 10 60 630 2 545 6.96e-133 400
Msa0756480 AT1G30440.1 36.163 589 322 12 25 566 10 591 1.85e-120 372
Msa0756480 AT3G08660.1 38.079 604 297 14 35 626 30 568 6.12e-119 366
Msa0756480 AT5G13600.1 38.855 489 269 8 34 500 20 500 5.63e-115 356
Msa0756480 AT5G64330.2 35.823 589 274 9 30 516 42 628 2.38e-113 354
Msa0756480 AT5G64330.1 33.888 661 311 11 30 569 42 697 4.07e-113 356
Msa0756480 AT5G03250.1 35.473 592 333 15 25 577 10 591 1.24e-109 342
Msa0756480 AT3G08660.3 37.762 572 280 13 67 626 1 508 1.34e-109 340
Msa0756480 AT2G47860.4 43.379 438 211 10 25 442 23 443 4.80e-109 336
Msa0756480 AT5G66560.1 36.414 541 271 11 34 508 13 546 1.15e-106 337
Msa0756480 AT3G44820.1 33.333 585 339 10 24 563 7 585 1.77e-105 333
Msa0756480 AT2G47860.6 41.215 461 211 11 25 442 23 466 9.17e-104 323
Msa0756480 AT5G64330.3 35.159 566 263 9 53 516 6 569 1.60e-103 327
Msa0756480 AT2G47860.5 40.789 456 227 10 125 551 1 442 1.55e-101 319
Msa0756480 AT2G47860.2 40.789 456 227 10 125 551 1 442 1.55e-101 319
Msa0756480 AT5G66560.3 36.902 523 257 11 52 508 2 517 1.59e-101 322
Msa0756480 AT5G66560.4 40.535 449 238 10 82 508 66 507 3.35e-101 321
Msa0756480 AT2G14820.2 37.014 489 275 10 39 507 26 501 7.52e-101 320
Msa0756480 AT2G14820.1 37.014 489 275 10 39 507 26 501 7.52e-101 320
Msa0756480 AT1G67900.5 38.286 525 250 11 37 508 23 526 2.30e-99 317
Msa0756480 AT1G67900.1 38.286 525 250 11 37 508 23 526 2.30e-99 317
Msa0756480 AT1G67900.3 38.286 525 250 11 37 508 23 526 2.30e-99 317
Msa0756480 AT1G67900.6 38.286 525 250 11 37 508 23 526 2.30e-99 317
Msa0756480 AT1G67900.2 38.286 525 250 11 37 508 23 526 2.30e-99 317
Msa0756480 AT1G67900.4 38.286 525 250 11 37 508 23 526 2.30e-99 317
Msa0756480 AT3G50840.1 34.151 530 317 7 29 551 5 509 2.06e-98 312
Msa0756480 AT5G10250.2 33.391 578 313 13 23 562 33 576 4.38e-98 313
Msa0756480 AT5G10250.1 33.275 568 312 13 23 562 33 561 5.44e-96 307
Msa0756480 AT4G31820.1 35.685 482 274 11 39 508 26 483 2.66e-91 294
Msa0756480 AT4G37590.1 35.378 489 269 10 37 509 24 481 4.46e-88 285
Msa0756480 AT3G50840.2 34.337 498 295 7 61 551 1 473 5.18e-88 284
Msa0756480 AT3G50840.3 34.337 498 295 7 61 551 1 473 5.18e-88 284
Msa0756480 AT5G67440.3 35.931 462 282 9 37 493 24 476 1.23e-87 284
Msa0756480 AT5G67440.1 35.931 462 282 9 37 493 24 476 1.23e-87 284
Msa0756480 AT2G23050.1 34.034 476 268 10 37 506 24 459 2.20e-84 273
Msa0756480 AT5G47800.3 32.444 487 294 10 35 508 21 485 2.26e-83 273
Msa0756480 AT5G47800.1 32.444 487 294 10 35 508 21 485 2.26e-83 273
Msa0756480 AT5G47800.4 32.444 487 294 10 35 508 21 485 2.26e-83 273
Msa0756480 AT3G08660.2 39.713 418 218 10 35 446 30 419 8.87e-83 267
Msa0756480 AT5G67440.2 35.714 448 266 10 55 493 5 439 6.33e-82 268
Msa0756480 AT5G47800.2 32.444 487 294 10 35 508 134 598 1.08e-81 271
Msa0756480 AT4G31820.2 35.022 454 259 11 67 508 1 430 2.72e-80 263
Msa0756480 AT3G26490.1 32.879 514 286 12 37 504 23 523 9.29e-80 264
Msa0756480 AT3G26490.3 32.879 514 286 12 37 504 23 523 9.29e-80 264
Msa0756480 AT3G26490.4 32.879 514 286 12 37 504 23 523 9.29e-80 264
Msa0756480 AT5G03250.2 34.151 489 276 13 125 577 1 479 5.82e-76 251
Msa0756480 AT5G66560.2 33.333 474 244 10 34 442 13 479 1.21e-75 250
Msa0756480 AT3G26490.2 31.486 451 255 11 37 446 23 460 3.49e-60 209
Msa0756480 AT1G52770.1 36.624 314 165 5 193 494 13 304 2.28e-56 197
Msa0756480 AT2G23050.2 32.898 383 216 9 125 506 1 343 7.71e-56 194
Msa0756480 AT5G48130.1 28.602 472 286 12 34 491 33 467 2.71e-55 199
Msa0756480 AT3G15570.1 35.789 285 152 4 228 494 38 309 5.98e-51 183
Msa0756480 AT3G19850.1 27.887 459 275 10 65 491 29 463 8.06e-48 176
Msa0756480 AT1G50280.1 28.964 473 292 12 42 487 5 460 2.22e-46 172
Msa0756480 AT1G50280.2 30.211 427 260 10 82 487 18 427 1.17e-45 169
Msa0756480 AT3G22104.1 26.974 456 273 10 42 478 6 420 8.37e-40 153
Msa0756480 AT3G03510.1 27.696 408 239 9 94 496 8 364 3.93e-38 147
Msa0756480 AT5G17580.2 25.745 470 307 10 42 498 22 462 9.43e-38 148
Msa0756480 AT5G17580.1 25.745 470 307 10 42 498 7 447 1.12e-37 147
Msa0756480 AT3G22104.4 25.587 383 228 7 112 478 4 345 1.02e-27 116
Msa0756480 AT3G22104.2 25.587 383 228 7 112 478 4 345 1.02e-27 116
Msa0756480 AT3G22104.3 25.587 383 228 7 112 478 4 345 1.02e-27 116
Msa0756480 AT3G49900.2 31.795 195 112 7 30 213 55 239 1.24e-13 74.3
Msa0756480 AT3G49900.1 31.795 195 112 7 30 213 55 239 1.35e-13 74.3

Find 137 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCCATGTCACTTAAAT+TGG 0.099646 5_2:-10770643 None:intergenic
AGCCTTAGACATCTATTTAA+AGG 0.193457 5_2:+10769789 Msa0756480:CDS
TCTTTCGAGCAGGATATATT+TGG 0.214701 5_2:+10769262 Msa0756480:intron
TAAAGGAAGATTCTCCAATT+TGG 0.228988 5_2:-10767908 None:intergenic
CTAGATAAGAAGACCTTCTT+TGG 0.230314 5_2:+10767346 Msa0756480:five_prime_UTR
GACATTGCATTCTTCTCTTT+TGG 0.249323 5_2:-10769361 None:intergenic
GGAAACCACTTTGTCTATAA+TGG 0.269644 5_2:+10769595 Msa0756480:CDS
CACCACCACCCTTTACAATA+TGG 0.282070 5_2:-10771305 None:intergenic
TCACAAGGTCAAATATTTCT+TGG 0.285885 5_2:+10767374 Msa0756480:five_prime_UTR
AAAACTTAAGAAAATGTTAA+AGG 0.291069 5_2:+10767521 Msa0756480:five_prime_UTR
GGTTTCCAATTTGAGATTCT+TGG 0.291899 5_2:-10769579 None:intergenic
ATTCCTTCGTATTCATTTAC+CGG 0.307235 5_2:+10769508 Msa0756480:CDS
TACCTTTAAATAGATGTCTA+AGG 0.307550 5_2:-10769791 None:intergenic
AGTTGCTTGCAGGCTTGATT+TGG 0.310330 5_2:+10769435 Msa0756480:CDS
TTTAGTTTGGTGTGAATAGA+AGG 0.321571 5_2:-10770828 None:intergenic
CTATAAGAACTCTTTGAAAA+AGG 0.323564 5_2:-10768797 None:intergenic
AATAGCAGAGAAAACAAAAT+TGG 0.326409 5_2:+10768605 Msa0756480:CDS
ATTGAACTCTCTGATGTTCC+CGG 0.330973 5_2:+10768354 Msa0756480:CDS
TTGATACAACAGTTGCTTGC+AGG 0.331579 5_2:+10769425 Msa0756480:CDS
ACCTGAATATACATTTAGTT+TGG 0.337497 5_2:-10770841 None:intergenic
AAAAGAATGGCAATGCAATT+AGG 0.350908 5_2:+10769460 Msa0756480:CDS
AATTACCAAGAATCTCAAAT+TGG 0.354888 5_2:+10769574 Msa0756480:CDS
AGTGATGTCAATGTCCAAAT+TGG 0.359152 5_2:+10767894 Msa0756480:CDS
CTCTCCATGTCACTTAAATT+GGG 0.374237 5_2:-10770642 None:intergenic
TTCTGTCATCTCAAGATATT+CGG 0.376339 5_2:-10768469 None:intergenic
CTAGAAGAAAGGTAATTCTA+TGG 0.387879 5_2:-10767327 None:intergenic
ATAAAATATAATTCTTGAGT+TGG 0.390624 5_2:+10771332 Msa0756480:three_prime_UTR
AAGGAATCTTCAAATATAAA+AGG 0.394765 5_2:+10767540 Msa0756480:five_prime_UTR
AAAGAAAGTTTGCAGCATAA+TGG 0.400198 5_2:+10770665 Msa0756480:CDS
AGATTATTCAGTTGGGAACT+TGG 0.401252 5_2:+10768491 Msa0756480:CDS
GGATTGCATTGCAACCTTGC+TGG 0.406623 5_2:+10771353 Msa0756480:three_prime_UTR
TATCCACACTTGGAGACTAA+TGG 0.409668 5_2:-10768285 None:intergenic
CCTTGTGAATTTCCCAAAGA+AGG 0.410567 5_2:-10767359 None:intergenic
AGAGAACTTGGACAACGGTT+TGG 0.419568 5_2:-10770749 None:intergenic
AACAGAGACCAGTTGTTGAT+TGG 0.421313 5_2:+10768742 Msa0756480:CDS
AGTTCGGTTTCAAAGAAACT+TGG 0.421844 5_2:+10771089 Msa0756480:CDS
AGTGGGAACCATATTGTAAA+GGG 0.423439 5_2:+10771297 Msa0756480:three_prime_UTR
GGGTTTAAACAGTTTGCTAT+TGG 0.424370 5_2:+10768834 Msa0756480:CDS
ATAGAAATTTATTTGATTTG+AGG 0.425801 5_2:+10767398 Msa0756480:five_prime_UTR
TTCAAATGCTTCTGCACCAC+CGG 0.425835 5_2:-10768373 None:intergenic
AAGAGTTCTTATAGCAATGA+TGG 0.430446 5_2:+10768806 Msa0756480:CDS
AAATGAAGACCTCAAATTAG+AGG 0.432193 5_2:+10770905 Msa0756480:CDS
ATCTTCCTTTACTTTACATA+AGG 0.434540 5_2:+10767920 Msa0756480:CDS
TAGATAAGAAGACCTTCTTT+GGG 0.436473 5_2:+10767347 Msa0756480:five_prime_UTR
ATGACAGAAGATTATTCAGT+TGG 0.439432 5_2:+10768483 Msa0756480:CDS
CAATCAAAACCTACAGAAGA+TGG 0.439804 5_2:+10769757 Msa0756480:CDS
GAAGGTGAAGCATTTGCAAT+AGG 0.443580 5_2:-10771017 None:intergenic
GATGGTATTGTTACTGCTAA+AGG 0.444847 5_2:+10771137 Msa0756480:CDS
CAACGGTTTGGACTGGTAAC+CGG 0.447250 5_2:-10770737 None:intergenic
ACTTCACTACCTCTAATTTG+AGG 0.447292 5_2:-10770914 None:intergenic
ACAGAAATCTCTACGAGGTT+TGG 0.458956 5_2:+10768878 Msa0756480:CDS
ATTTGGACATTGACATCACT+TGG 0.463936 5_2:-10767891 None:intergenic
TCAGCCCACCAATCAACAAC+TGG 0.478880 5_2:-10768750 None:intergenic
AGACTTCGCGATGCAATGAA+TGG 0.480374 5_2:+10770786 Msa0756480:CDS
TGAGCGGGTTGGAAAGCTAA+TGG 0.480997 5_2:+10769654 Msa0756480:CDS
AATTGCTTACATTGCTTGCA+AGG 0.482306 5_2:+10768647 Msa0756480:CDS
TAATGAGTCAGTTATAGTAT+TGG 0.491121 5_2:-10767571 None:intergenic
TTCCTTCGTATTCATTTACC+GGG 0.494561 5_2:+10769509 Msa0756480:CDS
GCTGTTCGTAATAGAGAACT+TGG 0.494662 5_2:-10770761 None:intergenic
AAGTGGGAACCATATTGTAA+AGG 0.496550 5_2:+10771296 Msa0756480:three_prime_UTR
CTATACATCCCATCTTCTGT+AGG 0.497214 5_2:-10769766 None:intergenic
ATACCATCCAAACGTGGAAA+AGG 0.497451 5_2:-10771122 None:intergenic
TGTGCATAGAGCATTAGAAT+AGG 0.499783 5_2:-10768858 None:intergenic
AAGGTCATGAAAATAAATAC+AGG 0.501104 5_2:+10771201 Msa0756480:exon
ATGTCATCACGATGTTAAAG+TGG 0.506615 5_2:+10771279 Msa0756480:three_prime_UTR
TCTCCAAGTGTGGATACATT+CGG 0.506959 5_2:+10768292 Msa0756480:CDS
CGAGCAGGATATATTTGGAA+AGG 0.507201 5_2:+10769267 Msa0756480:intron
CACTACCTTATGTAAAGTAA+AGG 0.508799 5_2:-10767925 None:intergenic
GCTTGATTTGGAGAAAAGAA+TGG 0.510077 5_2:+10769447 Msa0756480:CDS
ATATCTTTCTGTACTTGCCA+TGG 0.510837 5_2:+10767626 Msa0756480:exon
ACCAAACTAAATGTATATTC+AGG 0.522428 5_2:+10770840 Msa0756480:CDS
GGTAATTCTATGGAGGGTAG+AGG 0.522615 5_2:-10767317 None:intergenic
TCTTTCTGTACTTGCCATGG+TGG 0.522916 5_2:+10767629 Msa0756480:exon
GAGTGTCGTCGATTCTTGCT+TGG 0.523000 5_2:-10771170 None:intergenic
AGAGACCAGTTGTTGATTGG+TGG 0.523518 5_2:+10768745 Msa0756480:CDS
ACCCGCTCAATATCACTTTG+TGG 0.524055 5_2:-10769640 None:intergenic
GAGCAGGATATATTTGGAAA+GGG 0.526552 5_2:+10769268 Msa0756480:intron
AGTGTACCGTATGCTTAGAT+AGG 0.529667 5_2:-10771455 None:intergenic
TGACAGAAGATTATTCAGTT+GGG 0.532521 5_2:+10768484 Msa0756480:CDS
GGTCTTCTTATCTAGAAGAA+AGG 0.533076 5_2:-10767338 None:intergenic
ACTTGGACAACGGTTTGGAC+TGG 0.546671 5_2:-10770744 None:intergenic
TTTCTGCTTCATTTATAGTG+AGG 0.547211 5_2:+10767600 Msa0756480:five_prime_UTR
GTAATAGAGAACTTGGACAA+CGG 0.549721 5_2:-10770754 None:intergenic
TTTAACAGTTGATTTAAGTG+TGG 0.550369 5_2:-10770967 None:intergenic
TTTCCGAATGTATCCACACT+TGG 0.551161 5_2:-10768295 None:intergenic
AGAAGTGATAGCGGCTCTGA+CGG 0.551480 5_2:+10768693 Msa0756480:CDS
GTTCGGTTTCAAAGAAACTT+GGG 0.553017 5_2:+10771090 Msa0756480:CDS
AGGATATATTTGGAAAGGGA+AGG 0.553677 5_2:+10769272 Msa0756480:intron
CCTTCTTTGGGAAATTCACA+AGG 0.558524 5_2:+10767359 Msa0756480:five_prime_UTR
CGACGACACTCTATTTCCTA+AGG 0.562175 5_2:+10771182 Msa0756480:CDS
AACCATATTGTAAAGGGTGG+TGG 0.564776 5_2:+10771303 Msa0756480:three_prime_UTR
TTGCTGAAATAGCCACAGAC+AGG 0.565050 5_2:+10769686 Msa0756480:CDS
CAAAGTGATATTGAGCGGGT+TGG 0.565793 5_2:+10769643 Msa0756480:CDS
TTATTCAGTTGGGAACTTGG+TGG 0.567121 5_2:+10768494 Msa0756480:CDS
CATCACCATTATAGACAAAG+TGG 0.567160 5_2:-10769600 None:intergenic
ATTCTATGGAGGGTAGAGGA+AGG 0.573640 5_2:-10767313 None:intergenic
AACATCAGAGAGTTCAATGA+AGG 0.574582 5_2:-10768349 None:intergenic
GAAGAAAGGTAATTCTATGG+AGG 0.574630 5_2:-10767324 None:intergenic
TATAAATTTCGAGATAAATG+TGG 0.578053 5_2:+10768419 Msa0756480:CDS
CACATGCAGCTCAAAACGAC+CGG 0.579581 5_2:+10770718 Msa0756480:CDS
ACCACAAAGTGATATTGAGC+GGG 0.581240 5_2:+10769639 Msa0756480:CDS
TCGATGTAGACACGGTTCAA+AGG 0.583941 5_2:+10769542 Msa0756480:CDS
CTTATAGCAATGATGGCTAG+AGG 0.584871 5_2:+10768813 Msa0756480:CDS
TAAATCAACTGTTAAATCAA+CGG 0.587019 5_2:+10770974 Msa0756480:CDS
TTATAGCAATGATGGCTAGA+GGG 0.589083 5_2:+10768814 Msa0756480:CDS
AATCAAAACCTACAGAAGAT+GGG 0.590751 5_2:+10769758 Msa0756480:CDS
CTAGCAGCAAAATTCTGCTA+CGG 0.592687 5_2:+10768396 Msa0756480:CDS
CCATGAAAAGAACAAGTGAC+TGG 0.597611 5_2:+10767724 Msa0756480:CDS
AAGAAAGGTAATTCTATGGA+GGG 0.598694 5_2:-10767323 None:intergenic
TCAAATGCTTCTGCACCACC+GGG 0.605184 5_2:-10768372 None:intergenic
CACGTTATTCGATGTAGACA+CGG 0.606827 5_2:+10769534 Msa0756480:CDS
GGTAGAGGAAGGAATATGAG+TGG 0.613218 5_2:-10767302 None:intergenic
TCATCCCAATTTAAGTGACA+TGG 0.614869 5_2:+10770638 Msa0756480:CDS
TCAGTTATAGTATTGGCTCA+AGG 0.619930 5_2:-10767564 None:intergenic
TAAATCAACGGTAAAATCAA+CGG 0.622532 5_2:+10770986 Msa0756480:CDS
TACATCGAATAACGTGTCCC+CGG 0.623997 5_2:-10769527 None:intergenic
TCAGCAGAATGAGAATGAGA+AGG 0.624756 5_2:-10771035 None:intergenic
CATCGCTATGCTTAGATGTG+TGG 0.625147 5_2:+10768446 Msa0756480:CDS
GAGACCAGTTGTTGATTGGT+GGG 0.625912 5_2:+10768746 Msa0756480:CDS
GTCTAGACCACGATCCACCA+TGG 0.633131 5_2:-10767643 None:intergenic
CACCACAAAGTGATATTGAG+CGG 0.633715 5_2:+10769638 Msa0756480:CDS
AACTGATAAATTCCTGTCTG+TGG 0.634333 5_2:-10769698 None:intergenic
TGTCATCACGATGTTAAAGT+GGG 0.635930 5_2:+10771280 Msa0756480:three_prime_UTR
CGCTCAATATCACTTTGTGG+TGG 0.639852 5_2:-10769637 None:intergenic
TATCCATTAGTCTCCAAGTG+TGG 0.642032 5_2:+10768282 Msa0756480:CDS
GTATTGTTACTGCTAAAGGT+AGG 0.645750 5_2:+10771141 Msa0756480:CDS
GGGAACCATATTGTAAAGGG+TGG 0.650201 5_2:+10771300 Msa0756480:three_prime_UTR
GTACTTGCCATGGTGGATCG+TGG 0.650434 5_2:+10767636 Msa0756480:exon
TATATTGCGAGAAGTACAAG+TGG 0.662671 5_2:+10771389 Msa0756480:three_prime_UTR
ATGAGAGTAGTACACCAGCA+AGG 0.699607 5_2:-10771367 None:intergenic
GAACTCTCTGATGTTCCCGG+TGG 0.713406 5_2:+10768357 Msa0756480:CDS
TCATCTGTAAGAAGTGATAG+CGG 0.715394 5_2:+10768684 Msa0756480:CDS
TCCCCGGTAAATGAATACGA+AGG 0.717871 5_2:-10769511 None:intergenic
GAGTTCAATGAAGGACACGT+CGG 0.719748 5_2:-10768340 None:intergenic
GTAACAATACCATCCAAACG+TGG 0.725647 5_2:-10771128 None:intergenic
TCCTTCGTATTCATTTACCG+GGG 0.730046 5_2:+10769510 Msa0756480:CDS
TATGCACAGAAATCTCTACG+AGG 0.833179 5_2:+10768873 Msa0756480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATTATTAAGAATTA+AGG - chr5_2:10769240-10769259 None:intergenic 10.0%
!!! ATAGAAATTTATTTGATTTG+AGG + chr5_2:10767398-10767417 Msa0756480:five_prime_UTR 15.0%
!! AAAACTTAAGAAAATGTTAA+AGG + chr5_2:10767521-10767540 Msa0756480:five_prime_UTR 15.0%
!! CAAAAAAATCTTTATATTGA+CGG + chr5_2:10768234-10768253 Msa0756480:intron 15.0%
!!! GTTAAAATTTTACAATTTTC+AGG + chr5_2:10770614-10770633 Msa0756480:intron 15.0%
!! ATAAAATATAATTCTTGAGT+TGG + chr5_2:10771332-10771351 Msa0756480:three_prime_UTR 15.0%
!! AAGGAATCTTCAAATATAAA+AGG + chr5_2:10767540-10767559 Msa0756480:five_prime_UTR 20.0%
!!! TAATTATAGGATTTTTTCTC+AGG + chr5_2:10767863-10767882 Msa0756480:intron 20.0%
!! TTAATCAATCATAAAAACGT+AGG - chr5_2:10768209-10768228 None:intergenic 20.0%
!! TATAAATTTCGAGATAAATG+TGG + chr5_2:10768419-10768438 Msa0756480:CDS 20.0%
!!! TTTCTATCTTTTTTTAGAGA+GGG - chr5_2:10768910-10768929 None:intergenic 20.0%
!!! TTTTCTATCTTTTTTTAGAG+AGG - chr5_2:10768911-10768930 None:intergenic 20.0%
!! TATAAAAGTCTAATCAATGT+TGG - chr5_2:10769169-10769188 None:intergenic 20.0%
!!! TAGTAGTTTTAAAATGGATT+TGG - chr5_2:10769977-10769996 None:intergenic 20.0%
!!! TCTAAGTAGTAGTTTTAAAA+TGG - chr5_2:10769983-10770002 None:intergenic 20.0%
!!! TCCTATCATTAAATAGATTT+TGG + chr5_2:10770125-10770144 Msa0756480:intron 20.0%
!!! CAAATAAATGTATTGTTGTT+TGG + chr5_2:10770341-10770360 Msa0756480:intron 20.0%
!! TTAACAAAATCAAAAGATCA+TGG + chr5_2:10770377-10770396 Msa0756480:intron 20.0%
!! TAAATCAACTGTTAAATCAA+CGG + chr5_2:10770974-10770993 Msa0756480:CDS 20.0%
!!! TCGAAAATCTTTTATAAGTT+CGG + chr5_2:10771073-10771092 Msa0756480:CDS 20.0%
!!! CATCTATTTTTTTTGTTTGT+GGG - chr5_2:10771422-10771441 None:intergenic 20.0%
!!! TCATCTATTTTTTTTGTTTG+TGG - chr5_2:10771423-10771442 None:intergenic 20.0%
!!! AAAAGTTTTAGGGAATAATG+AGG - chr5_2:10767445-10767464 None:intergenic 25.0%
! TAATGAGTCAGTTATAGTAT+TGG - chr5_2:10767574-10767593 None:intergenic 25.0%
!! TATTGTTTTCTACCTTTTGT+TGG + chr5_2:10767807-10767826 Msa0756480:intron 25.0%
! AATTAAGCAATACAACTCAT+TGG - chr5_2:10767848-10767867 None:intergenic 25.0%
! GAGTTGTATTGCTTAATTAT+AGG + chr5_2:10767850-10767869 Msa0756480:intron 25.0%
! ATCTTCCTTTACTTTACATA+AGG + chr5_2:10767920-10767939 Msa0756480:CDS 25.0%
!!! AATTTTGTTTTCTCTGCTAT+TGG - chr5_2:10768606-10768625 None:intergenic 25.0%
! AATAGCAGAGAAAACAAAAT+TGG + chr5_2:10768605-10768624 Msa0756480:CDS 25.0%
!! CTATAAGAACTCTTTGAAAA+AGG - chr5_2:10768800-10768819 None:intergenic 25.0%
!!! TTCTATCTTTTTTTAGAGAG+GGG - chr5_2:10768909-10768928 None:intergenic 25.0%
! TGTAATTATATGTGTAAGTG+CGG - chr5_2:10769008-10769027 None:intergenic 25.0%
! AATTACCAAGAATCTCAAAT+TGG + chr5_2:10769574-10769593 Msa0756480:CDS 25.0%
! TACCTTTAAATAGATGTCTA+AGG - chr5_2:10769794-10769813 None:intergenic 25.0%
! ATCTATTTACATACAGAGAT+AGG - chr5_2:10770036-10770055 None:intergenic 25.0%
! GCCAAAATCTATTTAATGAT+AGG - chr5_2:10770129-10770148 None:intergenic 25.0%
! AGCTAAAAATCTTTATCCAA+TGG + chr5_2:10770165-10770184 Msa0756480:intron 25.0%
!!! TGTTGTTTTTGGCAAAATTA+TGG + chr5_2:10770425-10770444 Msa0756480:intron 25.0%
!!! GTTGTTTTTGGCAAAATTAT+GGG + chr5_2:10770426-10770445 Msa0756480:intron 25.0%
! ACAATAATACATGTTTGGAA+TGG - chr5_2:10770512-10770531 None:intergenic 25.0%
! ACACTACAATAATACATGTT+TGG - chr5_2:10770517-10770536 None:intergenic 25.0%
! ACCAAACTAAATGTATATTC+AGG + chr5_2:10770840-10770859 Msa0756480:CDS 25.0%
! ACCTGAATATACATTTAGTT+TGG - chr5_2:10770844-10770863 None:intergenic 25.0%
!! TTTAACAGTTGATTTAAGTG+TGG - chr5_2:10770970-10770989 None:intergenic 25.0%
! TAAATCAACGGTAAAATCAA+CGG + chr5_2:10770986-10771005 Msa0756480:CDS 25.0%
!! GAACTTATAAAAGATTTTCG+AGG - chr5_2:10771074-10771093 None:intergenic 25.0%
!!! GTATTTATTTTCATGACCTT+AGG - chr5_2:10771201-10771220 None:intergenic 25.0%
! AAGGTCATGAAAATAAATAC+AGG + chr5_2:10771201-10771220 Msa0756480:exon 25.0%
AAGAAAGGTAATTCTATGGA+GGG - chr5_2:10767326-10767345 None:intergenic 30.0%
CTAGAAGAAAGGTAATTCTA+TGG - chr5_2:10767330-10767349 None:intergenic 30.0%
TAGATAAGAAGACCTTCTTT+GGG + chr5_2:10767347-10767366 Msa0756480:five_prime_UTR 30.0%
TCACAAGGTCAAATATTTCT+TGG + chr5_2:10767374-10767393 Msa0756480:five_prime_UTR 30.0%
TTTCTGCTTCATTTATAGTG+AGG + chr5_2:10767600-10767619 Msa0756480:five_prime_UTR 30.0%
TAAAGGAAGATTCTCCAATT+TGG - chr5_2:10767911-10767930 None:intergenic 30.0%
CACTACCTTATGTAAAGTAA+AGG - chr5_2:10767928-10767947 None:intergenic 30.0%
TTGAAAGCAAGATGTATAAG+TGG + chr5_2:10768128-10768147 Msa0756480:intron 30.0%
TTCTGTCATCTCAAGATATT+CGG - chr5_2:10768472-10768491 None:intergenic 30.0%
ATGACAGAAGATTATTCAGT+TGG + chr5_2:10768483-10768502 Msa0756480:CDS 30.0%
TGACAGAAGATTATTCAGTT+GGG + chr5_2:10768484-10768503 Msa0756480:CDS 30.0%
AAGAGTTCTTATAGCAATGA+TGG + chr5_2:10768806-10768825 Msa0756480:CDS 30.0%
GTAATTATATGTGTAAGTGC+GGG - chr5_2:10769007-10769026 None:intergenic 30.0%
!!! ATTTTTTCTTTCTTTCGAGC+AGG + chr5_2:10769252-10769271 Msa0756480:intron 30.0%
! AAGACAAGAGCATGAAAAAA+GGG + chr5_2:10769309-10769328 Msa0756480:CDS 30.0%
!! CATTCTTCTCTTTTGGTAAT+AGG - chr5_2:10769357-10769376 None:intergenic 30.0%
AAAAGAATGGCAATGCAATT+AGG + chr5_2:10769460-10769479 Msa0756480:CDS 30.0%
ATTCCTTCGTATTCATTTAC+CGG + chr5_2:10769508-10769527 Msa0756480:CDS 30.0%
AATCAAAACCTACAGAAGAT+GGG + chr5_2:10769758-10769777 Msa0756480:CDS 30.0%
AGCCTTAGACATCTATTTAA+AGG + chr5_2:10769789-10769808 Msa0756480:CDS 30.0%
TAATGATAGGAAAACACAAG+CGG - chr5_2:10770116-10770135 None:intergenic 30.0%
!! AAGCTCTAGAGAATTAGTTT+AGG - chr5_2:10770294-10770313 None:intergenic 30.0%
ACAAAATCAAAAGATCATGG+TGG + chr5_2:10770380-10770399 Msa0756480:intron 30.0%
!!! TGTGAAGTTTGTGTTGTTTT+TGG + chr5_2:10770414-10770433 Msa0756480:intron 30.0%
TGTTTGTATAGTAACACGTT+TGG - chr5_2:10770478-10770497 None:intergenic 30.0%
AAAGAAAGTTTGCAGCATAA+TGG + chr5_2:10770665-10770684 Msa0756480:CDS 30.0%
!! TTTAGTTTGGTGTGAATAGA+AGG - chr5_2:10770831-10770850 None:intergenic 30.0%
AAATGAAGACCTCAAATTAG+AGG + chr5_2:10770905-10770924 Msa0756480:CDS 30.0%
! TTTTCTCCTATCTAAGCATA+CGG + chr5_2:10771449-10771468 Msa0756480:three_prime_UTR 30.0%
GAAGAAAGGTAATTCTATGG+AGG - chr5_2:10767327-10767346 None:intergenic 35.0%
GGTCTTCTTATCTAGAAGAA+AGG - chr5_2:10767341-10767360 None:intergenic 35.0%
CTAGATAAGAAGACCTTCTT+TGG + chr5_2:10767346-10767365 Msa0756480:five_prime_UTR 35.0%
! AGCTGAGCTGAAAAGTTTTA+GGG - chr5_2:10767455-10767474 None:intergenic 35.0%
! TAGCTGAGCTGAAAAGTTTT+AGG - chr5_2:10767456-10767475 None:intergenic 35.0%
!! TCAGTTATAGTATTGGCTCA+AGG - chr5_2:10767567-10767586 None:intergenic 35.0%
ATATCTTTCTGTACTTGCCA+TGG + chr5_2:10767626-10767645 Msa0756480:exon 35.0%
CAGTCACTAAATCCAACAAA+AGG - chr5_2:10767822-10767841 None:intergenic 35.0%
ATTTGGACATTGACATCACT+TGG - chr5_2:10767894-10767913 None:intergenic 35.0%
AGTGATGTCAATGTCCAAAT+TGG + chr5_2:10767894-10767913 Msa0756480:CDS 35.0%
AACATCAGAGAGTTCAATGA+AGG - chr5_2:10768352-10768371 None:intergenic 35.0%
AGATTATTCAGTTGGGAACT+TGG + chr5_2:10768491-10768510 Msa0756480:CDS 35.0%
GTAGCACTAAAAACAATTGC+AGG + chr5_2:10768543-10768562 Msa0756480:CDS 35.0%
! TTTTCTCTGCTATTGGAAGA+AGG - chr5_2:10768599-10768618 None:intergenic 35.0%
AATTGCTTACATTGCTTGCA+AGG + chr5_2:10768647-10768666 Msa0756480:CDS 35.0%
TCATCTGTAAGAAGTGATAG+CGG + chr5_2:10768684-10768703 Msa0756480:CDS 35.0%
TTATAGCAATGATGGCTAGA+GGG + chr5_2:10768814-10768833 Msa0756480:CDS 35.0%
!! GGGTTTAAACAGTTTGCTAT+TGG + chr5_2:10768834-10768853 Msa0756480:CDS 35.0%
! TGTGCATAGAGCATTAGAAT+AGG - chr5_2:10768861-10768880 None:intergenic 35.0%
TGTTCATATCTGTGCTTCAT+AGG + chr5_2:10769062-10769081 Msa0756480:intron 35.0%
! CTTCTTTTCTTTCGCAAACA+AGG - chr5_2:10769097-10769116 None:intergenic 35.0%
TCTTTCGAGCAGGATATATT+TGG + chr5_2:10769262-10769281 Msa0756480:intron 35.0%
GAGCAGGATATATTTGGAAA+GGG + chr5_2:10769268-10769287 Msa0756480:intron 35.0%
AGGATATATTTGGAAAGGGA+AGG + chr5_2:10769272-10769291 Msa0756480:intron 35.0%
!!! CTTTTTTCATGCTCTTGTCT+TGG - chr5_2:10769310-10769329 None:intergenic 35.0%
! CAAGACAAGAGCATGAAAAA+AGG + chr5_2:10769308-10769327 Msa0756480:CDS 35.0%
! GACATTGCATTCTTCTCTTT+TGG - chr5_2:10769364-10769383 None:intergenic 35.0%
!! GCTTGATTTGGAGAAAAGAA+TGG + chr5_2:10769447-10769466 Msa0756480:CDS 35.0%
TTCCTTCGTATTCATTTACC+GGG + chr5_2:10769509-10769528 Msa0756480:CDS 35.0%
! GGTTTCCAATTTGAGATTCT+TGG - chr5_2:10769582-10769601 None:intergenic 35.0%
GGAAACCACTTTGTCTATAA+TGG + chr5_2:10769595-10769614 Msa0756480:CDS 35.0%
CATCACCATTATAGACAAAG+TGG - chr5_2:10769603-10769622 None:intergenic 35.0%
AACTGATAAATTCCTGTCTG+TGG - chr5_2:10769701-10769720 None:intergenic 35.0%
!!! TCTGTAGGTTTTGATTGTTC+AGG - chr5_2:10769754-10769773 None:intergenic 35.0%
CAATCAAAACCTACAGAAGA+TGG + chr5_2:10769757-10769776 Msa0756480:CDS 35.0%
ATGCAATCACAGATCACAAT+CGG + chr5_2:10769919-10769938 Msa0756480:intron 35.0%
GATCACAATCGGATGAAAAT+TGG + chr5_2:10769930-10769949 Msa0756480:intron 35.0%
TCATCCCAATTTAAGTGACA+TGG + chr5_2:10770638-10770657 Msa0756480:CDS 35.0%
! CTCTCCATGTCACTTAAATT+GGG - chr5_2:10770645-10770664 None:intergenic 35.0%
! TCTCTCCATGTCACTTAAAT+TGG - chr5_2:10770646-10770665 None:intergenic 35.0%
GTAATAGAGAACTTGGACAA+CGG - chr5_2:10770757-10770776 None:intergenic 35.0%
ACTTCACTACCTCTAATTTG+AGG - chr5_2:10770917-10770936 None:intergenic 35.0%
!! ATAAAAGATTTTCGAGGCAG+TGG - chr5_2:10771068-10771087 None:intergenic 35.0%
AGTTCGGTTTCAAAGAAACT+TGG + chr5_2:10771089-10771108 Msa0756480:CDS 35.0%
GTTCGGTTTCAAAGAAACTT+GGG + chr5_2:10771090-10771109 Msa0756480:CDS 35.0%
GATGGTATTGTTACTGCTAA+AGG + chr5_2:10771137-10771156 Msa0756480:CDS 35.0%
GTATTGTTACTGCTAAAGGT+AGG + chr5_2:10771141-10771160 Msa0756480:CDS 35.0%
ATGTCATCACGATGTTAAAG+TGG + chr5_2:10771279-10771298 Msa0756480:three_prime_UTR 35.0%
TGTCATCACGATGTTAAAGT+GGG + chr5_2:10771280-10771299 Msa0756480:three_prime_UTR 35.0%
AAGTGGGAACCATATTGTAA+AGG + chr5_2:10771296-10771315 Msa0756480:three_prime_UTR 35.0%
AGTGGGAACCATATTGTAAA+GGG + chr5_2:10771297-10771316 Msa0756480:three_prime_UTR 35.0%
! TATATTGCGAGAAGTACAAG+TGG + chr5_2:10771389-10771408 Msa0756480:three_prime_UTR 35.0%
CCTTGTGAATTTCCCAAAGA+AGG - chr5_2:10767362-10767381 None:intergenic 40.0%
! CCTTCTTTGGGAAATTCACA+AGG + chr5_2:10767359-10767378 Msa0756480:five_prime_UTR 40.0%
! CCAGTCACTTGTTCTTTTCA+TGG - chr5_2:10767727-10767746 None:intergenic 40.0%
CCATGAAAAGAACAAGTGAC+TGG + chr5_2:10767724-10767743 Msa0756480:CDS 40.0%
! TATCCATTAGTCTCCAAGTG+TGG + chr5_2:10768282-10768301 Msa0756480:CDS 40.0%
TATCCACACTTGGAGACTAA+TGG - chr5_2:10768288-10768307 None:intergenic 40.0%
TCTCCAAGTGTGGATACATT+CGG + chr5_2:10768292-10768311 Msa0756480:CDS 40.0%
TTTCCGAATGTATCCACACT+TGG - chr5_2:10768298-10768317 None:intergenic 40.0%
ATTGAACTCTCTGATGTTCC+CGG + chr5_2:10768354-10768373 Msa0756480:CDS 40.0%
CTAGCAGCAAAATTCTGCTA+CGG + chr5_2:10768396-10768415 Msa0756480:CDS 40.0%
TTATTCAGTTGGGAACTTGG+TGG + chr5_2:10768494-10768513 Msa0756480:CDS 40.0%
AACAGAGACCAGTTGTTGAT+TGG + chr5_2:10768742-10768761 Msa0756480:CDS 40.0%
CTTATAGCAATGATGGCTAG+AGG + chr5_2:10768813-10768832 Msa0756480:CDS 40.0%
TATGCACAGAAATCTCTACG+AGG + chr5_2:10768873-10768892 Msa0756480:CDS 40.0%
ACAGAAATCTCTACGAGGTT+TGG + chr5_2:10768878-10768897 Msa0756480:CDS 40.0%
CGAGCAGGATATATTTGGAA+AGG + chr5_2:10769267-10769286 Msa0756480:intron 40.0%
TTGATACAACAGTTGCTTGC+AGG + chr5_2:10769425-10769444 Msa0756480:CDS 40.0%
TCCTTCGTATTCATTTACCG+GGG + chr5_2:10769510-10769529 Msa0756480:CDS 40.0%
CACGTTATTCGATGTAGACA+CGG + chr5_2:10769534-10769553 Msa0756480:CDS 40.0%
CACCACAAAGTGATATTGAG+CGG + chr5_2:10769638-10769657 Msa0756480:CDS 40.0%
ACCACAAAGTGATATTGAGC+GGG + chr5_2:10769639-10769658 Msa0756480:CDS 40.0%
CTATACATCCCATCTTCTGT+AGG - chr5_2:10769769-10769788 None:intergenic 40.0%
!! CATAGAGGAAGTGTAGCTTT+TGG - chr5_2:10769890-10769909 None:intergenic 40.0%
CTCGACCATTGAATGAAGAT+CGG + chr5_2:10770089-10770108 Msa0756480:intron 40.0%
GTAAGTGCAATGACTATGAG+AGG + chr5_2:10770197-10770216 Msa0756480:intron 40.0%
GCAATGACTATGAGAGGATT+CGG + chr5_2:10770203-10770222 Msa0756480:intron 40.0%
GCTGTTCGTAATAGAGAACT+TGG - chr5_2:10770764-10770783 None:intergenic 40.0%
! GAAGGTGAAGCATTTGCAAT+AGG - chr5_2:10771020-10771039 None:intergenic 40.0%
TCAGCAGAATGAGAATGAGA+AGG - chr5_2:10771038-10771057 None:intergenic 40.0%
ATACCATCCAAACGTGGAAA+AGG - chr5_2:10771125-10771144 None:intergenic 40.0%
GTAACAATACCATCCAAACG+TGG - chr5_2:10771131-10771150 None:intergenic 40.0%
AACCATATTGTAAAGGGTGG+TGG + chr5_2:10771303-10771322 Msa0756480:three_prime_UTR 40.0%
AGTGTACCGTATGCTTAGAT+AGG - chr5_2:10771458-10771477 None:intergenic 40.0%
ATTCTATGGAGGGTAGAGGA+AGG - chr5_2:10767316-10767335 None:intergenic 45.0%
GGTAATTCTATGGAGGGTAG+AGG - chr5_2:10767320-10767339 None:intergenic 45.0%
TCTTTCTGTACTTGCCATGG+TGG + chr5_2:10767629-10767648 Msa0756480:exon 45.0%
GAGTTCAATGAAGGACACGT+CGG - chr5_2:10768343-10768362 None:intergenic 45.0%
TTCAAATGCTTCTGCACCAC+CGG - chr5_2:10768376-10768395 None:intergenic 45.0%
CATCGCTATGCTTAGATGTG+TGG + chr5_2:10768446-10768465 Msa0756480:CDS 45.0%
! AGAGACCAGTTGTTGATTGG+TGG + chr5_2:10768745-10768764 Msa0756480:CDS 45.0%
! GAGACCAGTTGTTGATTGGT+GGG + chr5_2:10768746-10768765 Msa0756480:CDS 45.0%
GCAACAGACACAACTTGTGT+CGG - chr5_2:10768985-10769004 None:intergenic 45.0%
AGTTGCTTGCAGGCTTGATT+TGG + chr5_2:10769435-10769454 Msa0756480:CDS 45.0%
TCCCCGGTAAATGAATACGA+AGG - chr5_2:10769514-10769533 None:intergenic 45.0%
TACATCGAATAACGTGTCCC+CGG - chr5_2:10769530-10769549 None:intergenic 45.0%
TCGATGTAGACACGGTTCAA+AGG + chr5_2:10769542-10769561 Msa0756480:CDS 45.0%
CGCTCAATATCACTTTGTGG+TGG - chr5_2:10769640-10769659 None:intergenic 45.0%
ACCCGCTCAATATCACTTTG+TGG - chr5_2:10769643-10769662 None:intergenic 45.0%
CAAAGTGATATTGAGCGGGT+TGG + chr5_2:10769643-10769662 Msa0756480:CDS 45.0%
TTGCTGAAATAGCCACAGAC+AGG + chr5_2:10769686-10769705 Msa0756480:CDS 45.0%
TTGCATGACTGCATGCATAG+AGG - chr5_2:10769905-10769924 None:intergenic 45.0%
CACTTACGAATCTCGACCAT+TGG - chr5_2:10770184-10770203 None:intergenic 45.0%
TGTTATGTTGTTCCCACGAG+AGG - chr5_2:10770232-10770251 None:intergenic 45.0%
AGAGAACTTGGACAACGGTT+TGG - chr5_2:10770752-10770771 None:intergenic 45.0%
AGACTTCGCGATGCAATGAA+TGG + chr5_2:10770786-10770805 Msa0756480:CDS 45.0%
!! AAAGATTTTCGAGGCAGTGG+AGG - chr5_2:10771065-10771084 None:intergenic 45.0%
! GCTTTCTCCTTTTCCACGTT+TGG + chr5_2:10771115-10771134 Msa0756480:CDS 45.0%
! TCTCCTTTTCCACGTTTGGA+TGG + chr5_2:10771119-10771138 Msa0756480:CDS 45.0%
CGACGACACTCTATTTCCTA+AGG + chr5_2:10771182-10771201 Msa0756480:CDS 45.0%
GGGAACCATATTGTAAAGGG+TGG + chr5_2:10771300-10771319 Msa0756480:three_prime_UTR 45.0%
CACCACCACCCTTTACAATA+TGG - chr5_2:10771308-10771327 None:intergenic 45.0%
ATGAGAGTAGTACACCAGCA+AGG - chr5_2:10771370-10771389 None:intergenic 45.0%
!!! TTTAAATAGATTTTTTTAAA+AGG - chr5_2:10769847-10769866 None:intergenic 5.0%
!!! TTTTAAAAAAATCTATTTAA+AGG + chr5_2:10769846-10769865 Msa0756480:intron 5.0%
TCAAATGCTTCTGCACCACC+GGG - chr5_2:10768375-10768394 None:intergenic 50.0%
!! AGAAGTGATAGCGGCTCTGA+CGG + chr5_2:10768693-10768712 Msa0756480:CDS 50.0%
TCAGCCCACCAATCAACAAC+TGG - chr5_2:10768753-10768772 None:intergenic 50.0%
!! TGAGCGGGTTGGAAAGCTAA+TGG + chr5_2:10769654-10769673 Msa0756480:CDS 50.0%
GCGGTCCGATCTTCATTCAA+TGG - chr5_2:10770097-10770116 None:intergenic 50.0%
AGGATTCGGATACCTCTCGT+GGG + chr5_2:10770217-10770236 Msa0756480:intron 50.0%
CACATGCAGCTCAAAACGAC+CGG + chr5_2:10770718-10770737 Msa0756480:CDS 50.0%
!! CAACGGTTTGGACTGGTAAC+CGG - chr5_2:10770740-10770759 None:intergenic 50.0%
! ACTTGGACAACGGTTTGGAC+TGG - chr5_2:10770747-10770766 None:intergenic 50.0%
!! GAGTGTCGTCGATTCTTGCT+TGG - chr5_2:10771173-10771192 None:intergenic 50.0%
GGATTGCATTGCAACCTTGC+TGG + chr5_2:10771353-10771372 Msa0756480:three_prime_UTR 50.0%
!! GTACTTGCCATGGTGGATCG+TGG + chr5_2:10767636-10767655 Msa0756480:exon 55.0%
GTCTAGACCACGATCCACCA+TGG - chr5_2:10767646-10767665 None:intergenic 55.0%
GAACTCTCTGATGTTCCCGG+TGG + chr5_2:10768357-10768376 Msa0756480:CDS 55.0%
GAGGATTCGGATACCTCTCG+TGG + chr5_2:10770216-10770235 Msa0756480:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10767303 10771489 10767303 ID=Msa0756480;Name=Msa0756480
chr5_2 mRNA 10767303 10771489 10767303 ID=Msa0756480-mRNA-1;Parent=Msa0756480;Name=Msa0756480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=342|1|1|1|1|1|5|287|630
chr5_2 exon 10767303 10767745 10767303 ID=Msa0756480-mRNA-1:exon:4851;Parent=Msa0756480-mRNA-1
chr5_2 exon 10767872 10767941 10767872 ID=Msa0756480-mRNA-1:exon:4852;Parent=Msa0756480-mRNA-1
chr5_2 exon 10768282 10768899 10768282 ID=Msa0756480-mRNA-1:exon:4853;Parent=Msa0756480-mRNA-1
chr5_2 exon 10769274 10769810 10769274 ID=Msa0756480-mRNA-1:exon:4854;Parent=Msa0756480-mRNA-1
chr5_2 exon 10770636 10771489 10770636 ID=Msa0756480-mRNA-1:exon:4855;Parent=Msa0756480-mRNA-1
chr5_2 five_prime_UTR 10767303 10767644 10767303 ID=Msa0756480-mRNA-1:five_prime_utr;Parent=Msa0756480-mRNA-1
chr5_2 CDS 10767645 10767745 10767645 ID=Msa0756480-mRNA-1:cds;Parent=Msa0756480-mRNA-1
chr5_2 CDS 10767872 10767941 10767872 ID=Msa0756480-mRNA-1:cds;Parent=Msa0756480-mRNA-1
chr5_2 CDS 10768282 10768899 10768282 ID=Msa0756480-mRNA-1:cds;Parent=Msa0756480-mRNA-1
chr5_2 CDS 10769274 10769810 10769274 ID=Msa0756480-mRNA-1:cds;Parent=Msa0756480-mRNA-1
chr5_2 CDS 10770636 10771202 10770636 ID=Msa0756480-mRNA-1:cds;Parent=Msa0756480-mRNA-1
chr5_2 three_prime_UTR 10771203 10771489 10771203 ID=Msa0756480-mRNA-1:three_prime_utr;Parent=Msa0756480-mRNA-1
Gene Sequence

>Msa0756480

ATGGTGGATCGTGGTCTAGACAAAACTACAACATCTGCTAGTGACTTGTCTCTGAAGAAGCAAGAGCTTCTATCTAGTGCCATGAAAAGAACAAGTGACTGGATTTTTTCTCAGGAGATTCCAAGTGATGTCAATGTCCAAATTGGAGAATCTTCCTTTACTTTACATAAGTATCCATTAGTCTCCAAGTGTGGATACATTCGGAAACTCGTCTCAGAATCTAATGACTCCGACGTGTCCTTCATTGAACTCTCTGATGTTCCCGGTGGTGCAGAAGCATTTGAACTAGCAGCAAAATTCTGCTACGGTATAAATTTCGAGATAAATGTGGAAAACATCGCTATGCTTAGATGTGTGGCCGAATATCTTGAGATGACAGAAGATTATTCAGTTGGGAACTTGGTGGCAAGAACTGATGCATATTTGAATGATGTAGCACTAAAAACAATTGCAGGTTCTGTTTCAATCTTACATATTTCAGAAAGCCTTCTTCCAATAGCAGAGAAAACAAAATTGGTGAGCAAATGCATAGATGCAATTGCTTACATTGCTTGCAAGGAAAGTCAATTGTGTTCATCTGTAAGAAGTGATAGCGGCTCTGACGGAGTGATGTCATCTTCTGTGTCATCTCAACAGAGACCAGTTGTTGATTGGTGGGCTGAAGATCTAACTGTTCTTAGAATCGACCTTTTTCAAAGAGTTCTTATAGCAATGATGGCTAGAGGGTTTAAACAGTTTGCTATTGGTCCTATTCTAATGCTCTATGCACAGAAATCTCTACGAGGTTTGGATATATTTGGAAAGGGAAGGAAGAAGATTGAACCAAGACAAGAGCATGAAAAAAGGGTTATTTTAGAGACAATAGTGAGCCTATTACCAAAAGAGAAGAATGCAATGTCAGTAAGCTTTCTATCGATGCTGCTTCGTGCAGCAATATATCTTGATACAACAGTTGCTTGCAGGCTTGATTTGGAGAAAAGAATGGCAATGCAATTAGGACAAGCTGTCTTAGATGATCTTCTCATTCCTTCGTATTCATTTACCGGGGACACGTTATTCGATGTAGACACGGTTCAAAGGATCATGAATAATTACCAAGAATCTCAAATTGGAAACCACTTTGTCTATAATGGTGATGATGAATATTTTTCTCCACCACAAAGTGATATTGAGCGGGTTGGAAAGCTAATGGAAAACTATCTTGCTGAAATAGCCACAGACAGGAATTTATCAGTTGCAAAGTTCATCAGTCTAGCTGAATTGATTCCTGAACAATCAAAACCTACAGAAGATGGGATGTATAGAGCCTTAGACATCTATTTAAAGGCTCATCCCAATTTAAGTGACATGGAGAGAAAGAAAGTTTGCAGCATAATGGACTGTCAAAGACTATCACGAGAAGCATGTGCACATGCAGCTCAAAACGACCGGTTACCAGTCCAAACCGTTGTCCAAGTTCTCTATTACGAACAGCAAAGACTTCGCGATGCAATGAATGGAAGTGAAACTGCAGAATCACCTTCTATTCACACCAAACTAAATGTATATTCAGGTGATATTCAAGTTTCAAATGAACTTACAAGCTTACGAAGAGAAAATGAAGACCTCAAATTAGAGGTAGTGAAGTTGAAAATGAAACTAAAAGAGATCGAGATTTCCACACTTAAATCAACTGTTAAATCAACGGTAAAATCAACGGTTAATAGTCCTATTGCAAATGCTTCACCTTCTCATTCTCATTCTGCTGATAAGCCTCCACTGCCTCGAAAATCTTTTATAAGTTCGGTTTCAAAGAAACTTGGGAAGCTTTCTCCTTTTCCACGTTTGGATGGTATTGTTACTGCTAAAGGTAGGACAAAACCAAGCAAGAATCGACGACACTCTATTTCCTAA
Protein sequence

>Msa0756480

MVDRGLDKTTTSASDLSLKKQELLSSAMKRTSDWIFSQEIPSDVNVQIGESSFTLHKYPLVSKCGYIRKLVSESNDSDVSFIELSDVPGGAEAFELAAKFCYGINFEINVENIAMLRCVAEYLEMTEDYSVGNLVARTDAYLNDVALKTIAGSVSILHISESLLPIAEKTKLVSKCIDAIAYIACKESQLCSSVRSDSGSDGVMSSSVSSQQRPVVDWWAEDLTVLRIDLFQRVLIAMMARGFKQFAIGPILMLYAQKSLRGLDIFGKGRKKIEPRQEHEKRVILETIVSLLPKEKNAMSVSFLSMLLRAAIYLDTTVACRLDLEKRMAMQLGQAVLDDLLIPSYSFTGDTLFDVDTVQRIMNNYQESQIGNHFVYNGDDEYFSPPQSDIERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSKPTEDGMYRALDIYLKAHPNLSDMERKKVCSIMDCQRLSREACAHAAQNDRLPVQTVVQVLYYEQQRLRDAMNGSETAESPSIHTKLNVYSGDIQVSNELTSLRRENEDLKLEVVKLKMKLKEIEISTLKSTVKSTVKSTVNSPIANASPSHSHSADKPPLPRKSFISSVSKKLGKLSPFPRLDGIVTAKGRTKPSKNRRHSIS*