AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221260 MtrunA17_Chr4g0072591 97.283 184 5 0 1 184 1 184 7.35e-132 367
Msa1221260 MtrunA17_Chr2g0290281 31.073 177 117 2 1 177 4 175 3.22e-23 90.9
Msa1221260 MtrunA17_Chr7g0231191 25.989 177 114 3 6 176 10 175 9.99e-12 60.8
Msa1221260 MtrunA17_Chr3g0109681 25.385 130 87 1 45 174 77 196 2.38e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221260 AT4G25830.1 39.444 180 100 2 4 183 3 173 1.26e-41 138
Msa1221260 AT4G16442.1 33.516 182 112 3 1 180 4 178 8.62e-23 90.1
Msa1221260 AT2G35760.1 32.749 171 106 3 9 177 31 194 5.65e-20 83.6
Msa1221260 AT1G17200.1 23.977 171 117 3 9 179 34 191 6.44e-12 62.0

Find 49 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAATTGGAGATCATTTA+TGG 0.186265 8_1:+84833259 None:intergenic
CATATACAGTGCCTCCAAAT+TGG 0.251612 8_1:+84833296 None:intergenic
ACCAGATTCTGCTACCAAAT+TGG 0.256996 8_1:-84832188 Msa1221260:CDS
TGACAAATTCAAACAATATT+AGG 0.291725 8_1:+84831908 None:intergenic
TTCAAACGCAAGAACCTCTT+TGG 0.298843 8_1:+84832077 None:intergenic
TAGTGTGCTGTCACCCAATT+TGG 0.339265 8_1:-84833310 Msa1221260:five_prime_UTR
TCCAATTTGGTAGCAGAATC+TGG 0.345220 8_1:+84832187 None:intergenic
TGATATCATAGCCATTAAAA+TGG 0.349665 8_1:+84832136 None:intergenic
ATAATAATGCCCCTCCAATT+TGG 0.356813 8_1:+84832174 None:intergenic
CCATTGAAATTCCGTATTGT+AGG 0.365530 8_1:+84832829 None:intergenic
CACATGGTTGCATTTATTGT+TGG 0.378064 8_1:-84831933 Msa1221260:three_prime_UTR
TATGTGACATCTGCAGCTGC+TGG 0.381099 8_1:-84832895 Msa1221260:CDS
CATTTATGGAATGTAAGATA+TGG 0.418755 8_1:+84833273 None:intergenic
AAAGAGGTTCTTGCGTTTGA+AGG 0.419436 8_1:-84832075 Msa1221260:CDS
TTCTAAATTTCAGTGCCAAT+TGG 0.422565 8_1:+84833246 None:intergenic
ATATACAGTGCCTCCAAATT+GGG 0.448682 8_1:+84833297 None:intergenic
CCTACAATACGGAATTTCAA+TGG 0.448706 8_1:-84832829 Msa1221260:CDS
CTTATTATATGCACATGGCT+TGG 0.454545 8_1:-84832804 Msa1221260:CDS
GATTAGTTTCTTATTAGATC+AGG 0.461935 8_1:-84832782 Msa1221260:intron
TTCCATAAATGATCTCCAAT+TGG 0.472474 8_1:-84833261 Msa1221260:five_prime_UTR
TCTCAGCTTGTCCTACAATA+CGG 0.494365 8_1:-84832840 Msa1221260:CDS
AAACTTCTCCTCTAGCCATT+CGG 0.500585 8_1:+84833150 None:intergenic
TGTTGCATACCTTCATCCAC+TGG 0.513091 8_1:+84832216 None:intergenic
GAAAGCTACTTACAAGGACT+TGG 0.522093 8_1:-84833033 Msa1221260:CDS
AAGAGGTTCTTGCGTTTGAA+GGG 0.528514 8_1:-84832074 Msa1221260:CDS
ATTGGGTGACAGCACACTAC+TGG 0.532835 8_1:+84833314 None:intergenic
TTCAAATGCTGAAGTGTTTG+TGG 0.537098 8_1:+84832274 None:intergenic
TAAGAATGTACTCTCCAAAG+AGG 0.537196 8_1:-84832091 Msa1221260:CDS
ATGTGACATCTGCAGCTGCT+GGG 0.542822 8_1:-84832894 Msa1221260:CDS
AGATTCTGCTACCAAATTGG+AGG 0.555285 8_1:-84832185 Msa1221260:CDS
TTAGAATTAATCCACGGGTA+TGG 0.557256 8_1:+84833337 None:intergenic
AGAAGCATTCCAGTGGATGA+AGG 0.566952 8_1:-84832225 Msa1221260:CDS
GATTCTGCTACCAAATTGGA+GGG 0.570432 8_1:-84832184 Msa1221260:CDS
TTAATCCACGGGTATGGTCA+TGG 0.573893 8_1:+84833343 None:intergenic
TGTGCTGTCACCCAATTTGG+AGG 0.575647 8_1:-84833307 Msa1221260:five_prime_UTR
TGAACGTGTGCAAGACGGAT+AGG 0.579809 8_1:-84831958 Msa1221260:three_prime_UTR
TACTGGTTAGAATTAATCCA+CGG 0.581828 8_1:+84833331 None:intergenic
TAAGAAGAAAGCTACTTACA+AGG 0.592857 8_1:-84833039 Msa1221260:CDS
TGGTTCTTATTATATGCACA+TGG 0.599744 8_1:-84832809 Msa1221260:CDS
TGAAGAAATGGAATTCCGAA+TGG 0.602583 8_1:-84833165 Msa1221260:exon
TGAAATGAACGTGTGCAAGA+CGG 0.625599 8_1:-84831963 Msa1221260:three_prime_UTR
ATGGAATTCCGAATGGCTAG+AGG 0.629083 8_1:-84833158 Msa1221260:CDS
ATATGTGTGAAATTTACCAC+AGG 0.646110 8_1:-84832005 Msa1221260:three_prime_UTR
ACTGGTTAGAATTAATCCAC+GGG 0.647477 8_1:+84833332 None:intergenic
ATCCACCATGACCATACCCG+TGG 0.647886 8_1:-84833348 Msa1221260:five_prime_UTR
CTGGATCAGAAGCATTCCAG+TGG 0.661575 8_1:-84832232 Msa1221260:CDS
ATTCTGCTACCAAATTGGAG+GGG 0.694887 8_1:-84832183 Msa1221260:CDS
ATCCACGGGTATGGTCATGG+TGG 0.709467 8_1:+84833346 None:intergenic
GCAAGACGGATAGGTACACA+TGG 0.710290 8_1:-84831949 Msa1221260:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTTTTAATTTTTTTGAT+AGG - chr8_1:84831909-84831928 Msa1221260:three_prime_UTR 10.0%
!! TACATATTACATATAATTAT+AGG - chr8_1:84832398-84832417 Msa1221260:intron 10.0%
!!! CAAGTTTTTTTTTTTTTTTA+AGG - chr8_1:84833311-84833330 Msa1221260:five_prime_UTR 10.0%
!!! ACATTTTTAATTTTTTTGAT+AGG - chr8_1:84831909-84831928 Msa1221260:three_prime_UTR 10.0%
!! TACATATTACATATAATTAT+AGG - chr8_1:84832398-84832417 Msa1221260:intron 10.0%
!!! CAAGTTTTTTTTTTTTTTTA+AGG - chr8_1:84833311-84833330 Msa1221260:five_prime_UTR 10.0%
!!! ATTTTTTTGATAGGATATAT+AGG - chr8_1:84831918-84831937 Msa1221260:three_prime_UTR 15.0%
!!! GAATTTTTGTATGTTTTTTT+AGG - chr8_1:84832199-84832218 Msa1221260:CDS 15.0%
!! TACTTATACATGATAATATA+AGG - chr8_1:84832495-84832514 Msa1221260:intron 15.0%
!! AAAAATTAAAATTGAATGAC+AGG - chr8_1:84832565-84832584 Msa1221260:intron 15.0%
!! AAAATTAAAATTGAATGACA+GGG - chr8_1:84832566-84832585 Msa1221260:intron 15.0%
!!! AAAAAGATAATCATTTTGTT+TGG - chr8_1:84832602-84832621 Msa1221260:intron 15.0%
!!! ATTTTTTTGATAGGATATAT+AGG - chr8_1:84831918-84831937 Msa1221260:three_prime_UTR 15.0%
!!! GAATTTTTGTATGTTTTTTT+AGG - chr8_1:84832199-84832218 Msa1221260:CDS 15.0%
!! TACTTATACATGATAATATA+AGG - chr8_1:84832495-84832514 Msa1221260:intron 15.0%
!! AAAAATTAAAATTGAATGAC+AGG - chr8_1:84832565-84832584 Msa1221260:intron 15.0%
!! AAAATTAAAATTGAATGACA+GGG - chr8_1:84832566-84832585 Msa1221260:intron 15.0%
!!! AAAAAGATAATCATTTTGTT+TGG - chr8_1:84832602-84832621 Msa1221260:intron 15.0%
!! TGACAAATTCAAACAATATT+AGG + chr8_1:84833221-84833240 None:intergenic 20.0%
!! TGACAAATTCAAACAATATT+AGG + chr8_1:84833221-84833240 None:intergenic 20.0%
! CATTTATGGAATGTAAGATA+TGG + chr8_1:84831856-84831875 None:intergenic 25.0%
!!! AATTTTCATCTCTGAAGAAA+TGG - chr8_1:84831949-84831968 Msa1221260:three_prime_UTR 25.0%
! AGAGAACAAACAAATAAAGA+GGG + chr8_1:84832139-84832158 None:intergenic 25.0%
! ATATACCATGATCTTGAATT+AGG - chr8_1:84832177-84832196 Msa1221260:CDS 25.0%
! AAATTCCTAATTCAAGATCA+TGG + chr8_1:84832185-84832204 None:intergenic 25.0%
!!! GATTAGTTTCTTATTAGATC+AGG - chr8_1:84832344-84832363 Msa1221260:intron 25.0%
! TACTCGAATCAAAATAAACT+TGG - chr8_1:84832469-84832488 Msa1221260:intron 25.0%
! TCATTTCCTCTTCAAAAATT+AGG - chr8_1:84832522-84832541 Msa1221260:intron 25.0%
!! ATTATCTTTTTCTTCCTACT+GGG + chr8_1:84832593-84832612 None:intergenic 25.0%
! CCAAATGATTATTTCAATCA+AGG + chr8_1:84832787-84832806 None:intergenic 25.0%
! CCTTGATTGAAATAATCATT+TGG - chr8_1:84832784-84832803 Msa1221260:CDS 25.0%
! AATAATCATTTGGCAAATCT+TGG - chr8_1:84832794-84832813 Msa1221260:CDS 25.0%
!! CTATATAGCATCCATTTTAA+TGG - chr8_1:84832979-84832998 Msa1221260:intron 25.0%
! TGATATCATAGCCATTAAAA+TGG + chr8_1:84832993-84833012 None:intergenic 25.0%
!!! TTTTCATTTTTTACTTCCTG+TGG + chr8_1:84833140-84833159 None:intergenic 25.0%
! CATTTATGGAATGTAAGATA+TGG + chr8_1:84831856-84831875 None:intergenic 25.0%
!!! AATTTTCATCTCTGAAGAAA+TGG - chr8_1:84831949-84831968 Msa1221260:three_prime_UTR 25.0%
! AGAGAACAAACAAATAAAGA+GGG + chr8_1:84832139-84832158 None:intergenic 25.0%
! ATATACCATGATCTTGAATT+AGG - chr8_1:84832177-84832196 Msa1221260:CDS 25.0%
! AAATTCCTAATTCAAGATCA+TGG + chr8_1:84832185-84832204 None:intergenic 25.0%
!!! GATTAGTTTCTTATTAGATC+AGG - chr8_1:84832344-84832363 Msa1221260:intron 25.0%
! TACTCGAATCAAAATAAACT+TGG - chr8_1:84832469-84832488 Msa1221260:intron 25.0%
! TCATTTCCTCTTCAAAAATT+AGG - chr8_1:84832522-84832541 Msa1221260:intron 25.0%
!! ATTATCTTTTTCTTCCTACT+GGG + chr8_1:84832593-84832612 None:intergenic 25.0%
! CCAAATGATTATTTCAATCA+AGG + chr8_1:84832787-84832806 None:intergenic 25.0%
! CCTTGATTGAAATAATCATT+TGG - chr8_1:84832784-84832803 Msa1221260:CDS 25.0%
! AATAATCATTTGGCAAATCT+TGG - chr8_1:84832794-84832813 Msa1221260:CDS 25.0%
!! CTATATAGCATCCATTTTAA+TGG - chr8_1:84832979-84832998 Msa1221260:intron 25.0%
! TGATATCATAGCCATTAAAA+TGG + chr8_1:84832993-84833012 None:intergenic 25.0%
!!! TTTTCATTTTTTACTTCCTG+TGG + chr8_1:84833140-84833159 None:intergenic 25.0%
! TACTGGTTAGAATTAATCCA+CGG + chr8_1:84831798-84831817 None:intergenic 30.0%
TTCCATAAATGATCTCCAAT+TGG - chr8_1:84831865-84831884 Msa1221260:three_prime_UTR 30.0%
TTCTAAATTTCAGTGCCAAT+TGG + chr8_1:84831883-84831902 None:intergenic 30.0%
! TGCTTTTGATACTGAAACAA+AGG - chr8_1:84832048-84832067 Msa1221260:exon 30.0%
TAAGAAGAAAGCTACTTACA+AGG - chr8_1:84832087-84832106 Msa1221260:CDS 30.0%
GAGAGAACAAACAAATAAAG+AGG + chr8_1:84832140-84832159 None:intergenic 30.0%
TGGTTCTTATTATATGCACA+TGG - chr8_1:84832317-84832336 Msa1221260:intron 30.0%
AAGTAAGCTCAAATCCAATT+AGG - chr8_1:84832446-84832465 Msa1221260:intron 30.0%
!! TTTTGATTCGAGTACCTAAT+TGG + chr8_1:84832463-84832482 None:intergenic 30.0%
!! GAGATACCTAATTTTTGAAG+AGG + chr8_1:84832531-84832550 None:intergenic 30.0%
! GATTATCTTTTTCTTCCTAC+TGG + chr8_1:84832594-84832613 None:intergenic 30.0%
GCATAACTCTTAAAGTAGTT+AGG - chr8_1:84832694-84832713 Msa1221260:intron 30.0%
ATATGTGTGAAATTTACCAC+AGG - chr8_1:84833121-84833140 Msa1221260:CDS 30.0%
! TACTGGTTAGAATTAATCCA+CGG + chr8_1:84831798-84831817 None:intergenic 30.0%
TTCCATAAATGATCTCCAAT+TGG - chr8_1:84831865-84831884 Msa1221260:three_prime_UTR 30.0%
TTCTAAATTTCAGTGCCAAT+TGG + chr8_1:84831883-84831902 None:intergenic 30.0%
! TGCTTTTGATACTGAAACAA+AGG - chr8_1:84832048-84832067 Msa1221260:exon 30.0%
TAAGAAGAAAGCTACTTACA+AGG - chr8_1:84832087-84832106 Msa1221260:CDS 30.0%
GAGAGAACAAACAAATAAAG+AGG + chr8_1:84832140-84832159 None:intergenic 30.0%
TGGTTCTTATTATATGCACA+TGG - chr8_1:84832317-84832336 Msa1221260:intron 30.0%
AAGTAAGCTCAAATCCAATT+AGG - chr8_1:84832446-84832465 Msa1221260:intron 30.0%
!! TTTTGATTCGAGTACCTAAT+TGG + chr8_1:84832463-84832482 None:intergenic 30.0%
!! GAGATACCTAATTTTTGAAG+AGG + chr8_1:84832531-84832550 None:intergenic 30.0%
! GATTATCTTTTTCTTCCTAC+TGG + chr8_1:84832594-84832613 None:intergenic 30.0%
GCATAACTCTTAAAGTAGTT+AGG - chr8_1:84832694-84832713 Msa1221260:intron 30.0%
ATATGTGTGAAATTTACCAC+AGG - chr8_1:84833121-84833140 Msa1221260:CDS 30.0%
TTAGAATTAATCCACGGGTA+TGG + chr8_1:84831792-84831811 None:intergenic 35.0%
ACTGGTTAGAATTAATCCAC+GGG + chr8_1:84831797-84831816 None:intergenic 35.0%
ATATACAGTGCCTCCAAATT+GGG + chr8_1:84831832-84831851 None:intergenic 35.0%
TGCCAATTGGAGATCATTTA+TGG + chr8_1:84831870-84831889 None:intergenic 35.0%
TGAAGAAATGGAATTCCGAA+TGG - chr8_1:84831961-84831980 Msa1221260:three_prime_UTR 35.0%
CCATTGAAATTCCGTATTGT+AGG + chr8_1:84832300-84832319 None:intergenic 35.0%
CCTACAATACGGAATTTCAA+TGG - chr8_1:84832297-84832316 Msa1221260:CDS 35.0%
CTTATTATATGCACATGGCT+TGG - chr8_1:84832322-84832341 Msa1221260:intron 35.0%
! TTCAAATGCTGAAGTGTTTG+TGG + chr8_1:84832855-84832874 None:intergenic 35.0%
ATAATAATGCCCCTCCAATT+TGG + chr8_1:84832955-84832974 None:intergenic 35.0%
TAAGAATGTACTCTCCAAAG+AGG - chr8_1:84833035-84833054 Msa1221260:CDS 35.0%
CACATGGTTGCATTTATTGT+TGG - chr8_1:84833193-84833212 Msa1221260:five_prime_UTR 35.0%
TTAGAATTAATCCACGGGTA+TGG + chr8_1:84831792-84831811 None:intergenic 35.0%
ACTGGTTAGAATTAATCCAC+GGG + chr8_1:84831797-84831816 None:intergenic 35.0%
ATATACAGTGCCTCCAAATT+GGG + chr8_1:84831832-84831851 None:intergenic 35.0%
TGCCAATTGGAGATCATTTA+TGG + chr8_1:84831870-84831889 None:intergenic 35.0%
TGAAGAAATGGAATTCCGAA+TGG - chr8_1:84831961-84831980 Msa1221260:three_prime_UTR 35.0%
CCATTGAAATTCCGTATTGT+AGG + chr8_1:84832300-84832319 None:intergenic 35.0%
CCTACAATACGGAATTTCAA+TGG - chr8_1:84832297-84832316 Msa1221260:CDS 35.0%
CTTATTATATGCACATGGCT+TGG - chr8_1:84832322-84832341 Msa1221260:intron 35.0%
! TTCAAATGCTGAAGTGTTTG+TGG + chr8_1:84832855-84832874 None:intergenic 35.0%
ATAATAATGCCCCTCCAATT+TGG + chr8_1:84832955-84832974 None:intergenic 35.0%
TAAGAATGTACTCTCCAAAG+AGG - chr8_1:84833035-84833054 Msa1221260:CDS 35.0%
CACATGGTTGCATTTATTGT+TGG - chr8_1:84833193-84833212 Msa1221260:five_prime_UTR 35.0%
CATATACAGTGCCTCCAAAT+TGG + chr8_1:84831833-84831852 None:intergenic 40.0%
AAACTTCTCCTCTAGCCATT+CGG + chr8_1:84831979-84831998 None:intergenic 40.0%
GAAAGCTACTTACAAGGACT+TGG - chr8_1:84832093-84832112 Msa1221260:CDS 40.0%
TCTCAGCTTGTCCTACAATA+CGG - chr8_1:84832286-84832305 Msa1221260:CDS 40.0%
TCCAGTAAGTGCAAAAAGAC+AGG + chr8_1:84832879-84832898 None:intergenic 40.0%
ACCAGATTCTGCTACCAAAT+TGG - chr8_1:84832938-84832957 Msa1221260:intron 40.0%
! TCCAATTTGGTAGCAGAATC+TGG + chr8_1:84832942-84832961 None:intergenic 40.0%
AGATTCTGCTACCAAATTGG+AGG - chr8_1:84832941-84832960 Msa1221260:intron 40.0%
GATTCTGCTACCAAATTGGA+GGG - chr8_1:84832942-84832961 Msa1221260:intron 40.0%
ATTCTGCTACCAAATTGGAG+GGG - chr8_1:84832943-84832962 Msa1221260:intron 40.0%
TTCAAACGCAAGAACCTCTT+TGG + chr8_1:84833052-84833071 None:intergenic 40.0%
AAAGAGGTTCTTGCGTTTGA+AGG - chr8_1:84833051-84833070 Msa1221260:CDS 40.0%
AAGAGGTTCTTGCGTTTGAA+GGG - chr8_1:84833052-84833071 Msa1221260:CDS 40.0%
TGAAATGAACGTGTGCAAGA+CGG - chr8_1:84833163-84833182 Msa1221260:exon 40.0%
CATATACAGTGCCTCCAAAT+TGG + chr8_1:84831833-84831852 None:intergenic 40.0%
AAACTTCTCCTCTAGCCATT+CGG + chr8_1:84831979-84831998 None:intergenic 40.0%
GAAAGCTACTTACAAGGACT+TGG - chr8_1:84832093-84832112 Msa1221260:CDS 40.0%
TCTCAGCTTGTCCTACAATA+CGG - chr8_1:84832286-84832305 Msa1221260:CDS 40.0%
TCCAGTAAGTGCAAAAAGAC+AGG + chr8_1:84832879-84832898 None:intergenic 40.0%
ACCAGATTCTGCTACCAAAT+TGG - chr8_1:84832938-84832957 Msa1221260:intron 40.0%
! TCCAATTTGGTAGCAGAATC+TGG + chr8_1:84832942-84832961 None:intergenic 40.0%
AGATTCTGCTACCAAATTGG+AGG - chr8_1:84832941-84832960 Msa1221260:intron 40.0%
GATTCTGCTACCAAATTGGA+GGG - chr8_1:84832942-84832961 Msa1221260:intron 40.0%
ATTCTGCTACCAAATTGGAG+GGG - chr8_1:84832943-84832962 Msa1221260:intron 40.0%
TTCAAACGCAAGAACCTCTT+TGG + chr8_1:84833052-84833071 None:intergenic 40.0%
AAAGAGGTTCTTGCGTTTGA+AGG - chr8_1:84833051-84833070 Msa1221260:CDS 40.0%
AAGAGGTTCTTGCGTTTGAA+GGG - chr8_1:84833052-84833071 Msa1221260:CDS 40.0%
TGAAATGAACGTGTGCAAGA+CGG - chr8_1:84833163-84833182 Msa1221260:exon 40.0%
TTAATCCACGGGTATGGTCA+TGG + chr8_1:84831786-84831805 None:intergenic 45.0%
TAGTGTGCTGTCACCCAATT+TGG - chr8_1:84831816-84831835 Msa1221260:three_prime_UTR 45.0%
ATGGAATTCCGAATGGCTAG+AGG - chr8_1:84831968-84831987 Msa1221260:three_prime_UTR 45.0%
! GCCTGTCTTTTTGCACTTAC+TGG - chr8_1:84832875-84832894 Msa1221260:CDS 45.0%
!! AGAAGCATTCCAGTGGATGA+AGG - chr8_1:84832901-84832920 Msa1221260:CDS 45.0%
TGTTGCATACCTTCATCCAC+TGG + chr8_1:84832913-84832932 None:intergenic 45.0%
TTAATCCACGGGTATGGTCA+TGG + chr8_1:84831786-84831805 None:intergenic 45.0%
TAGTGTGCTGTCACCCAATT+TGG - chr8_1:84831816-84831835 Msa1221260:three_prime_UTR 45.0%
ATGGAATTCCGAATGGCTAG+AGG - chr8_1:84831968-84831987 Msa1221260:three_prime_UTR 45.0%
! GCCTGTCTTTTTGCACTTAC+TGG - chr8_1:84832875-84832894 Msa1221260:CDS 45.0%
!! AGAAGCATTCCAGTGGATGA+AGG - chr8_1:84832901-84832920 Msa1221260:CDS 45.0%
TGTTGCATACCTTCATCCAC+TGG + chr8_1:84832913-84832932 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAAAC+AGG + chr8_1:84833249-84833268 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAAAAC+AGG + chr8_1:84833249-84833268 None:intergenic 5.0%
ATTGGGTGACAGCACACTAC+TGG + chr8_1:84831815-84831834 None:intergenic 50.0%
TGTGCTGTCACCCAATTTGG+AGG - chr8_1:84831819-84831838 Msa1221260:three_prime_UTR 50.0%
TATGTGACATCTGCAGCTGC+TGG - chr8_1:84832231-84832250 Msa1221260:CDS 50.0%
ATGTGACATCTGCAGCTGCT+GGG - chr8_1:84832232-84832251 Msa1221260:CDS 50.0%
TTGAATGACAGGGACCCAGT+AGG - chr8_1:84832576-84832595 Msa1221260:intron 50.0%
!! CTGGATCAGAAGCATTCCAG+TGG - chr8_1:84832894-84832913 Msa1221260:CDS 50.0%
TGAACGTGTGCAAGACGGAT+AGG - chr8_1:84833168-84833187 Msa1221260:exon 50.0%
GCAAGACGGATAGGTACACA+TGG - chr8_1:84833177-84833196 Msa1221260:exon 50.0%
ATTGGGTGACAGCACACTAC+TGG + chr8_1:84831815-84831834 None:intergenic 50.0%
TGTGCTGTCACCCAATTTGG+AGG - chr8_1:84831819-84831838 Msa1221260:three_prime_UTR 50.0%
TATGTGACATCTGCAGCTGC+TGG - chr8_1:84832231-84832250 Msa1221260:CDS 50.0%
ATGTGACATCTGCAGCTGCT+GGG - chr8_1:84832232-84832251 Msa1221260:CDS 50.0%
TTGAATGACAGGGACCCAGT+AGG - chr8_1:84832576-84832595 Msa1221260:intron 50.0%
!! CTGGATCAGAAGCATTCCAG+TGG - chr8_1:84832894-84832913 Msa1221260:CDS 50.0%
TGAACGTGTGCAAGACGGAT+AGG - chr8_1:84833168-84833187 Msa1221260:exon 50.0%
GCAAGACGGATAGGTACACA+TGG - chr8_1:84833177-84833196 Msa1221260:exon 50.0%
ATCCACCATGACCATACCCG+TGG - chr8_1:84831778-84831797 Msa1221260:three_prime_UTR 55.0%
ATCCACGGGTATGGTCATGG+TGG + chr8_1:84831783-84831802 None:intergenic 55.0%
ATCCACCATGACCATACCCG+TGG - chr8_1:84831778-84831797 Msa1221260:three_prime_UTR 55.0%
ATCCACGGGTATGGTCATGG+TGG + chr8_1:84831783-84831802 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 84831775 84833373 84831775 ID=Msa1221260;Name=Msa1221260
chr8_1 mRNA 84831775 84833373 84831775 ID=Msa1221260-mRNA-1;Parent=Msa1221260;Name=Msa1221260-mRNA-1;_AED=0.16;_eAED=0.16;_QI=193|1|1|1|1|1|3|292|184
chr8_1 exon 84831775 84832318 84831775 ID=Msa1221260-mRNA-1:exon:30487;Parent=Msa1221260-mRNA-1
chr8_1 exon 84832783 84832927 84832783 ID=Msa1221260-mRNA-1:exon:30486;Parent=Msa1221260-mRNA-1
chr8_1 exon 84833023 84833373 84833023 ID=Msa1221260-mRNA-1:exon:30485;Parent=Msa1221260-mRNA-1
chr8_1 five_prime_UTR 84833181 84833373 84833181 ID=Msa1221260-mRNA-1:five_prime_utr;Parent=Msa1221260-mRNA-1
chr8_1 CDS 84833023 84833180 84833023 ID=Msa1221260-mRNA-1:cds;Parent=Msa1221260-mRNA-1
chr8_1 CDS 84832783 84832927 84832783 ID=Msa1221260-mRNA-1:cds;Parent=Msa1221260-mRNA-1
chr8_1 CDS 84832067 84832318 84832067 ID=Msa1221260-mRNA-1:cds;Parent=Msa1221260-mRNA-1
chr8_1 three_prime_UTR 84831775 84832066 84831775 ID=Msa1221260-mRNA-1:three_prime_utr;Parent=Msa1221260-mRNA-1
Gene Sequence

>Msa1221260

ATGGAATTCCGAATGGCTAGAGGAGAAGTTTTGCTAAGAGTTTCAGCAATATTGTTCTTAGTATCAACAGCTTGTATAGTTGCTTTTGATACTGAAACAAAGGTTGTAATATTAACGATTAAGAAGAAAGCTACTTACAAGGACTTGGATGCTCTCAAGATCTTGTTGTATGTGACATCTGCAGCTGCTGGGTATAACATGCTTCAATTATGCAAACACTCTTTCTCAGCTTGTCCTACAATACGGAATTTCAATGGTTCTTATTATATGCACATGGCTTGGATTAGTTTCTTATTAGATCAGATTGTTGTGTACTTGACATTCGCCACAAACACTTCAGCATTTGAAGCCTGTCTTTTTGCACTTACTGGATCAGAAGCATTCCAGTGGATGAAGGTATGCAACAAATTCACCAGATTCTGCTACCAAATTGGAGGGGCATTATTATGCTGCTATATAGCATCCATTTTAATGGCTATGATATCAACTATCTCAGCTTACAAAGTTTTAAGAATGTACTCTCCAAAGAGGTTCTTGCGTTTGAAGGGAAAATGA

Protein sequence

>Msa1221260

MEFRMARGEVLLRVSAILFLVSTACIVAFDTETKVVILTIKKKATYKDLDALKILLYVTSAAAGYNMLQLCKHSFSACPTIRNFNGSYYMHMAWISFLLDQIVVYLTFATNTSAFEACLFALTGSEAFQWMKVCNKFTRFCYQIGGALLCCYIASILMAMISTISAYKVLRMYSPKRFLRLKGK*