AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337340 MtrunA17_Chr4g0072591 96.739 184 6 0 1 184 1 184 6.53e-131 364
Msa1337340 MtrunA17_Chr2g0290281 31.073 177 117 2 1 177 4 175 4.34e-23 90.5
Msa1337340 MtrunA17_Chr3g0109681 25.385 130 87 1 45 174 77 196 3.06e-11 60.1
Msa1337340 MtrunA17_Chr7g0231191 25.989 177 114 3 6 176 10 175 3.89e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337340 AT4G25830.1 39.444 180 100 2 4 183 3 173 3.35e-41 137
Msa1337340 AT4G16442.1 33.516 182 112 3 1 180 4 178 1.39e-22 89.7
Msa1337340 AT2G35760.1 32.164 171 107 3 9 177 31 194 8.89e-20 82.8
Msa1337340 AT1G17200.1 23.977 171 117 3 9 179 34 191 8.14e-12 61.6

Find 49 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAATTGGAGATCATTTA+TGG 0.179815 tig0001526:+55050 None:intergenic
TTCAAATGCTGAAGTGTTTA+TGG 0.214707 tig0001526:+53794 None:intergenic
TAGTGTGCTGTCACCCATTT+TGG 0.253259 tig0001526:-55101 Msa1337340:five_prime_UTR
ACCAGATTCTGCTACCAAAT+TGG 0.256996 tig0001526:-53708 Msa1337340:CDS
CATATACAGTGCCTCCAAAA+TGG 0.268682 tig0001526:+55087 None:intergenic
TGACAAATTCAAACAATATT+AGG 0.291725 tig0001526:+53428 None:intergenic
TTCAAACGCAAGAACCTCTT+TGG 0.298843 tig0001526:+53597 None:intergenic
ATGTCTAGTATTCTAAATTT+CGG 0.326049 tig0001526:+55027 None:intergenic
TCCAATTTGGTAGCAGAATC+TGG 0.345220 tig0001526:+53707 None:intergenic
TGATATCATAGCCATTAAAA+TGG 0.349665 tig0001526:+53656 None:intergenic
ATAATAATGCCCCTCCAATT+TGG 0.356813 tig0001526:+53694 None:intergenic
CCATTGAAATTCCGTATTGT+AGG 0.365530 tig0001526:+54620 None:intergenic
CACATGGTTGCATTTATTGT+TGG 0.378064 tig0001526:-53453 Msa1337340:three_prime_UTR
TATGTGACATCTGCAGCTGC+TGG 0.381099 tig0001526:-54686 Msa1337340:CDS
TTCTAAATTTCGGTGCCAAT+TGG 0.400511 tig0001526:+55037 None:intergenic
CATTTATGGAATGTAAGATA+TGG 0.418755 tig0001526:+55064 None:intergenic
AAAGAGGTTCTTGCGTTTGA+AGG 0.419436 tig0001526:-53595 Msa1337340:CDS
CCTACAATACGGAATTTCAA+TGG 0.448706 tig0001526:-54620 Msa1337340:CDS
CTTATTATATGCACATGGCT+TGG 0.454545 tig0001526:-54595 Msa1337340:CDS
GATTAGTTTCTTATTAGATC+AGG 0.461935 tig0001526:-54573 Msa1337340:intron
TTCCATAAATGATCTCCAAT+TGG 0.472474 tig0001526:-55052 Msa1337340:five_prime_UTR
TCTCAGCTTGTCCTACAATA+CGG 0.494365 tig0001526:-54631 Msa1337340:CDS
AAACTTCTCCTCTAGCCATT+CGG 0.500585 tig0001526:+54941 None:intergenic
ATATACAGTGCCTCCAAAAT+GGG 0.500643 tig0001526:+55088 None:intergenic
TGTTGCATACCTTCATCCAC+TGG 0.513091 tig0001526:+53736 None:intergenic
GAAAGCTACTTACAAGGACT+TGG 0.522093 tig0001526:-54824 Msa1337340:CDS
AAGAGGTTCTTGCGTTTGAA+GGG 0.528514 tig0001526:-53594 Msa1337340:CDS
AATGGGTGACAGCACACTAC+TGG 0.532835 tig0001526:+55105 None:intergenic
TAAGAATGTACTCTCCAAAG+AGG 0.537196 tig0001526:-53611 Msa1337340:CDS
ATGTGACATCTGCAGCTGCT+GGG 0.542822 tig0001526:-54685 Msa1337340:CDS
AGATTCTGCTACCAAATTGG+AGG 0.555285 tig0001526:-53705 Msa1337340:CDS
TTAATCCACGGGTATGGTCG+TGG 0.556224 tig0001526:+55134 None:intergenic
TTAGAATTAATCCACGGGTA+TGG 0.556551 tig0001526:+55128 None:intergenic
AGAAGCATTCCAGTGGATGA+AGG 0.566952 tig0001526:-53745 Msa1337340:CDS
GATTCTGCTACCAAATTGGA+GGG 0.570432 tig0001526:-53704 Msa1337340:CDS
TGAACGTGTGCAAGACGGAT+AGG 0.579809 tig0001526:-53478 Msa1337340:three_prime_UTR
TACTGGTTAGAATTAATCCA+CGG 0.581828 tig0001526:+55122 None:intergenic
TAAGAAGAAAGCTACTTACA+AGG 0.592857 tig0001526:-54830 Msa1337340:CDS
TGGTTCTTATTATATGCACA+TGG 0.599744 tig0001526:-54600 Msa1337340:CDS
TGAAGAAATGGAATTCCGAA+TGG 0.602583 tig0001526:-54956 Msa1337340:exon
TGAAATGAACGTGTGCAAGA+CGG 0.625599 tig0001526:-53483 Msa1337340:three_prime_UTR
ATGGAATTCCGAATGGCTAG+AGG 0.629083 tig0001526:-54949 Msa1337340:CDS
ATCCACCACGACCATACCCG+TGG 0.632599 tig0001526:-55139 Msa1337340:five_prime_UTR
ATATGTGTGAAATTTACCAC+AGG 0.646110 tig0001526:-53525 Msa1337340:three_prime_UTR
ACTGGTTAGAATTAATCCAC+GGG 0.647477 tig0001526:+55123 None:intergenic
CTGGATCAGAAGCATTCCAG+TGG 0.661575 tig0001526:-53752 Msa1337340:CDS
ATCCACGGGTATGGTCGTGG+TGG 0.666250 tig0001526:+55137 None:intergenic
ATTCTGCTACCAAATTGGAG+GGG 0.694887 tig0001526:-53703 Msa1337340:CDS
GCAAGACGGATAGGTACACA+TGG 0.710290 tig0001526:-53469 Msa1337340:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTTTTAATTTTTTTGAT+AGG - tig0001526:53435-53454 Msa1337340:three_prime_UTR 10.0%
!!! ACATTTTTAATTTTTTTGAT+AGG - tig0001526:53435-53454 Msa1337340:three_prime_UTR 10.0%
!!! ATTTTTTTGATAGGATATAT+AGG - tig0001526:53444-53463 Msa1337340:three_prime_UTR 15.0%
!!! GAATTTTTGTATGTTTTTTT+AGG - tig0001526:53725-53744 Msa1337340:CDS 15.0%
!! TACTTATACATGATAATATA+AGG - tig0001526:54031-54050 Msa1337340:intron 15.0%
!! AAAAATTAAAATTGAATGAC+AGG - tig0001526:54101-54120 Msa1337340:intron 15.0%
!! AAAATTAAAATTGAATGACA+GGG - tig0001526:54102-54121 Msa1337340:intron 15.0%
!!! AAAAAGATAATCATTTTGTT+TGG - tig0001526:54138-54157 Msa1337340:intron 15.0%
!! AATTTCTTGATAAAATCTAA+GGG - tig0001526:54480-54499 Msa1337340:intron 15.0%
!!! TGCAAGTTTTTTTTTTTTTA+AGG - tig0001526:55102-55121 Msa1337340:five_prime_UTR 15.0%
!!! ATTTTTTTGATAGGATATAT+AGG - tig0001526:53444-53463 Msa1337340:three_prime_UTR 15.0%
!!! GAATTTTTGTATGTTTTTTT+AGG - tig0001526:53725-53744 Msa1337340:CDS 15.0%
!! TACTTATACATGATAATATA+AGG - tig0001526:54031-54050 Msa1337340:intron 15.0%
!! AAAAATTAAAATTGAATGAC+AGG - tig0001526:54101-54120 Msa1337340:intron 15.0%
!! AAAATTAAAATTGAATGACA+GGG - tig0001526:54102-54121 Msa1337340:intron 15.0%
!!! AAAAAGATAATCATTTTGTT+TGG - tig0001526:54138-54157 Msa1337340:intron 15.0%
!! AATTTCTTGATAAAATCTAA+GGG - tig0001526:54480-54499 Msa1337340:intron 15.0%
!!! TGCAAGTTTTTTTTTTTTTA+AGG - tig0001526:55102-55121 Msa1337340:five_prime_UTR 15.0%
!! ATGTCTAGTATTCTAAATTT+CGG + tig0001526:53419-53438 None:intergenic 20.0%
!! CAATTTCTTGATAAAATCTA+AGG - tig0001526:54479-54498 Msa1337340:intron 20.0%
!! TGACAAATTCAAACAATATT+AGG + tig0001526:55018-55037 None:intergenic 20.0%
!! ATGTCTAGTATTCTAAATTT+CGG + tig0001526:53419-53438 None:intergenic 20.0%
!! CAATTTCTTGATAAAATCTA+AGG - tig0001526:54479-54498 Msa1337340:intron 20.0%
!! TGACAAATTCAAACAATATT+AGG + tig0001526:55018-55037 None:intergenic 20.0%
! CATTTATGGAATGTAAGATA+TGG + tig0001526:53382-53401 None:intergenic 25.0%
!!! AATTTTCATCTCTGAAGAAA+TGG - tig0001526:53475-53494 Msa1337340:three_prime_UTR 25.0%
! TGAGAACAAACAAATAAAGA+GGG + tig0001526:53665-53684 None:intergenic 25.0%
! ATATACCATGATCTTGAATT+AGG - tig0001526:53703-53722 Msa1337340:CDS 25.0%
! AAATTCCTAATTCAAGATCA+TGG + tig0001526:53711-53730 None:intergenic 25.0%
!!! GATTAGTTTCTTATTAGATC+AGG - tig0001526:53870-53889 Msa1337340:intron 25.0%
! TACTCGAATCAAAATAAACT+TGG - tig0001526:54005-54024 Msa1337340:intron 25.0%
! TCATTTCCTCTTCAAAAATT+AGG - tig0001526:54058-54077 Msa1337340:intron 25.0%
!! ATTATCTTTTTCTTCCTACT+GGG + tig0001526:54129-54148 None:intergenic 25.0%
! TTAACAGTGCATATGAATTA+AGG - tig0001526:54297-54316 Msa1337340:intron 25.0%
! AAAATGCTAGATATCAAGAA+TGG - tig0001526:54320-54339 Msa1337340:intron 25.0%
!!! TATTGGCTTACATTAATTTC+AGG - tig0001526:54455-54474 Msa1337340:intron 25.0%
! CCAAATGATTATTTCAATCA+AGG + tig0001526:54584-54603 None:intergenic 25.0%
! CCTTGATTGAAATAATCATT+TGG - tig0001526:54581-54600 Msa1337340:CDS 25.0%
! AATAATCATTTGGCAAATCT+TGG - tig0001526:54591-54610 Msa1337340:CDS 25.0%
!! CTATATAGCATCCATTTTAA+TGG - tig0001526:54776-54795 Msa1337340:intron 25.0%
! TGATATCATAGCCATTAAAA+TGG + tig0001526:54790-54809 None:intergenic 25.0%
!!! TTTTCATTTTTTACTTCCTG+TGG + tig0001526:54937-54956 None:intergenic 25.0%
! CATTTATGGAATGTAAGATA+TGG + tig0001526:53382-53401 None:intergenic 25.0%
!!! AATTTTCATCTCTGAAGAAA+TGG - tig0001526:53475-53494 Msa1337340:three_prime_UTR 25.0%
! TGAGAACAAACAAATAAAGA+GGG + tig0001526:53665-53684 None:intergenic 25.0%
! ATATACCATGATCTTGAATT+AGG - tig0001526:53703-53722 Msa1337340:CDS 25.0%
! AAATTCCTAATTCAAGATCA+TGG + tig0001526:53711-53730 None:intergenic 25.0%
!!! GATTAGTTTCTTATTAGATC+AGG - tig0001526:53870-53889 Msa1337340:intron 25.0%
! TACTCGAATCAAAATAAACT+TGG - tig0001526:54005-54024 Msa1337340:intron 25.0%
! TCATTTCCTCTTCAAAAATT+AGG - tig0001526:54058-54077 Msa1337340:intron 25.0%
!! ATTATCTTTTTCTTCCTACT+GGG + tig0001526:54129-54148 None:intergenic 25.0%
! TTAACAGTGCATATGAATTA+AGG - tig0001526:54297-54316 Msa1337340:intron 25.0%
! AAAATGCTAGATATCAAGAA+TGG - tig0001526:54320-54339 Msa1337340:intron 25.0%
!!! TATTGGCTTACATTAATTTC+AGG - tig0001526:54455-54474 Msa1337340:intron 25.0%
! CCAAATGATTATTTCAATCA+AGG + tig0001526:54584-54603 None:intergenic 25.0%
! CCTTGATTGAAATAATCATT+TGG - tig0001526:54581-54600 Msa1337340:CDS 25.0%
! AATAATCATTTGGCAAATCT+TGG - tig0001526:54591-54610 Msa1337340:CDS 25.0%
!! CTATATAGCATCCATTTTAA+TGG - tig0001526:54776-54795 Msa1337340:intron 25.0%
! TGATATCATAGCCATTAAAA+TGG + tig0001526:54790-54809 None:intergenic 25.0%
!!! TTTTCATTTTTTACTTCCTG+TGG + tig0001526:54937-54956 None:intergenic 25.0%
! TACTGGTTAGAATTAATCCA+CGG + tig0001526:53324-53343 None:intergenic 30.0%
TTCCATAAATGATCTCCAAT+TGG - tig0001526:53391-53410 Msa1337340:three_prime_UTR 30.0%
! TGCTTTTGATACTGAAACAA+AGG - tig0001526:53574-53593 Msa1337340:exon 30.0%
TAAGAAGAAAGCTACTTACA+AGG - tig0001526:53613-53632 Msa1337340:CDS 30.0%
GTGAGAACAAACAAATAAAG+AGG + tig0001526:53666-53685 None:intergenic 30.0%
TGGTTCTTATTATATGCACA+TGG - tig0001526:53843-53862 Msa1337340:intron 30.0%
AAGTAAGCTCAAATCCAATT+AGG - tig0001526:53982-54001 Msa1337340:intron 30.0%
!! TTTTGATTCGAGTACCTAAT+TGG + tig0001526:53999-54018 None:intergenic 30.0%
!! GAGATACCTAATTTTTGAAG+AGG + tig0001526:54067-54086 None:intergenic 30.0%
! GATTATCTTTTTCTTCCTAC+TGG + tig0001526:54130-54149 None:intergenic 30.0%
GCATAACTCTTAAAGTAGTT+AGG - tig0001526:54230-54249 Msa1337340:intron 30.0%
AGAAAGATTCAAGAATGACA+TGG - tig0001526:54351-54370 Msa1337340:intron 30.0%
AGAAAGATTCAAGAATGACA+TGG + tig0001526:54351-54370 None:intergenic 30.0%
! TTCAAATGCTGAAGTGTTTA+TGG + tig0001526:54652-54671 None:intergenic 30.0%
ATATGTGTGAAATTTACCAC+AGG - tig0001526:54918-54937 Msa1337340:CDS 30.0%
! TACTGGTTAGAATTAATCCA+CGG + tig0001526:53324-53343 None:intergenic 30.0%
TTCCATAAATGATCTCCAAT+TGG - tig0001526:53391-53410 Msa1337340:three_prime_UTR 30.0%
! TGCTTTTGATACTGAAACAA+AGG - tig0001526:53574-53593 Msa1337340:exon 30.0%
TAAGAAGAAAGCTACTTACA+AGG - tig0001526:53613-53632 Msa1337340:CDS 30.0%
GTGAGAACAAACAAATAAAG+AGG + tig0001526:53666-53685 None:intergenic 30.0%
TGGTTCTTATTATATGCACA+TGG - tig0001526:53843-53862 Msa1337340:intron 30.0%
AAGTAAGCTCAAATCCAATT+AGG - tig0001526:53982-54001 Msa1337340:intron 30.0%
!! TTTTGATTCGAGTACCTAAT+TGG + tig0001526:53999-54018 None:intergenic 30.0%
!! GAGATACCTAATTTTTGAAG+AGG + tig0001526:54067-54086 None:intergenic 30.0%
! GATTATCTTTTTCTTCCTAC+TGG + tig0001526:54130-54149 None:intergenic 30.0%
GCATAACTCTTAAAGTAGTT+AGG - tig0001526:54230-54249 Msa1337340:intron 30.0%
AGAAAGATTCAAGAATGACA+TGG - tig0001526:54351-54370 Msa1337340:intron 30.0%
AGAAAGATTCAAGAATGACA+TGG + tig0001526:54351-54370 None:intergenic 30.0%
! TTCAAATGCTGAAGTGTTTA+TGG + tig0001526:54652-54671 None:intergenic 30.0%
ATATGTGTGAAATTTACCAC+AGG - tig0001526:54918-54937 Msa1337340:CDS 30.0%
TTAGAATTAATCCACGGGTA+TGG + tig0001526:53318-53337 None:intergenic 35.0%
ACTGGTTAGAATTAATCCAC+GGG + tig0001526:53323-53342 None:intergenic 35.0%
ATATACAGTGCCTCCAAAAT+GGG + tig0001526:53358-53377 None:intergenic 35.0%
TGCCAATTGGAGATCATTTA+TGG + tig0001526:53396-53415 None:intergenic 35.0%
!! TTCTAAATTTCGGTGCCAAT+TGG + tig0001526:53409-53428 None:intergenic 35.0%
TGAAGAAATGGAATTCCGAA+TGG - tig0001526:53487-53506 Msa1337340:three_prime_UTR 35.0%
CCATTGAAATTCCGTATTGT+AGG + tig0001526:53826-53845 None:intergenic 35.0%
CCTACAATACGGAATTTCAA+TGG - tig0001526:53823-53842 Msa1337340:intron 35.0%
CTTATTATATGCACATGGCT+TGG - tig0001526:53848-53867 Msa1337340:intron 35.0%
CAATAAAATCTCAGTCTGAC+CGG + tig0001526:54440-54459 None:intergenic 35.0%
ATAATAATGCCCCTCCAATT+TGG + tig0001526:54752-54771 None:intergenic 35.0%
TAAGAATGTACTCTCCAAAG+AGG - tig0001526:54832-54851 Msa1337340:CDS 35.0%
CACATGGTTGCATTTATTGT+TGG - tig0001526:54990-55009 Msa1337340:five_prime_UTR 35.0%
TTAGAATTAATCCACGGGTA+TGG + tig0001526:53318-53337 None:intergenic 35.0%
ACTGGTTAGAATTAATCCAC+GGG + tig0001526:53323-53342 None:intergenic 35.0%
ATATACAGTGCCTCCAAAAT+GGG + tig0001526:53358-53377 None:intergenic 35.0%
TGCCAATTGGAGATCATTTA+TGG + tig0001526:53396-53415 None:intergenic 35.0%
!! TTCTAAATTTCGGTGCCAAT+TGG + tig0001526:53409-53428 None:intergenic 35.0%
TGAAGAAATGGAATTCCGAA+TGG - tig0001526:53487-53506 Msa1337340:three_prime_UTR 35.0%
CCATTGAAATTCCGTATTGT+AGG + tig0001526:53826-53845 None:intergenic 35.0%
CCTACAATACGGAATTTCAA+TGG - tig0001526:53823-53842 Msa1337340:intron 35.0%
CTTATTATATGCACATGGCT+TGG - tig0001526:53848-53867 Msa1337340:intron 35.0%
CAATAAAATCTCAGTCTGAC+CGG + tig0001526:54440-54459 None:intergenic 35.0%
ATAATAATGCCCCTCCAATT+TGG + tig0001526:54752-54771 None:intergenic 35.0%
TAAGAATGTACTCTCCAAAG+AGG - tig0001526:54832-54851 Msa1337340:CDS 35.0%
CACATGGTTGCATTTATTGT+TGG - tig0001526:54990-55009 Msa1337340:five_prime_UTR 35.0%
CATATACAGTGCCTCCAAAA+TGG + tig0001526:53359-53378 None:intergenic 40.0%
AAACTTCTCCTCTAGCCATT+CGG + tig0001526:53505-53524 None:intergenic 40.0%
GAAAGCTACTTACAAGGACT+TGG - tig0001526:53619-53638 Msa1337340:CDS 40.0%
TCTCAGCTTGTCCTACAATA+CGG - tig0001526:53812-53831 Msa1337340:CDS 40.0%
! CGGTCAGACTGAGATTTTAT+TGG - tig0001526:54438-54457 Msa1337340:intron 40.0%
TCCAGTAAGTGCAAAAAGAC+AGG + tig0001526:54676-54695 None:intergenic 40.0%
ACCAGATTCTGCTACCAAAT+TGG - tig0001526:54735-54754 Msa1337340:intron 40.0%
! TCCAATTTGGTAGCAGAATC+TGG + tig0001526:54739-54758 None:intergenic 40.0%
AGATTCTGCTACCAAATTGG+AGG - tig0001526:54738-54757 Msa1337340:intron 40.0%
GATTCTGCTACCAAATTGGA+GGG - tig0001526:54739-54758 Msa1337340:intron 40.0%
ATTCTGCTACCAAATTGGAG+GGG - tig0001526:54740-54759 Msa1337340:intron 40.0%
TTCAAACGCAAGAACCTCTT+TGG + tig0001526:54849-54868 None:intergenic 40.0%
AAAGAGGTTCTTGCGTTTGA+AGG - tig0001526:54848-54867 Msa1337340:CDS 40.0%
AAGAGGTTCTTGCGTTTGAA+GGG - tig0001526:54849-54868 Msa1337340:CDS 40.0%
TGAAATGAACGTGTGCAAGA+CGG - tig0001526:54960-54979 Msa1337340:exon 40.0%
CATATACAGTGCCTCCAAAA+TGG + tig0001526:53359-53378 None:intergenic 40.0%
AAACTTCTCCTCTAGCCATT+CGG + tig0001526:53505-53524 None:intergenic 40.0%
GAAAGCTACTTACAAGGACT+TGG - tig0001526:53619-53638 Msa1337340:CDS 40.0%
TCTCAGCTTGTCCTACAATA+CGG - tig0001526:53812-53831 Msa1337340:CDS 40.0%
! CGGTCAGACTGAGATTTTAT+TGG - tig0001526:54438-54457 Msa1337340:intron 40.0%
TCCAGTAAGTGCAAAAAGAC+AGG + tig0001526:54676-54695 None:intergenic 40.0%
ACCAGATTCTGCTACCAAAT+TGG - tig0001526:54735-54754 Msa1337340:intron 40.0%
! TCCAATTTGGTAGCAGAATC+TGG + tig0001526:54739-54758 None:intergenic 40.0%
AGATTCTGCTACCAAATTGG+AGG - tig0001526:54738-54757 Msa1337340:intron 40.0%
GATTCTGCTACCAAATTGGA+GGG - tig0001526:54739-54758 Msa1337340:intron 40.0%
ATTCTGCTACCAAATTGGAG+GGG - tig0001526:54740-54759 Msa1337340:intron 40.0%
TTCAAACGCAAGAACCTCTT+TGG + tig0001526:54849-54868 None:intergenic 40.0%
AAAGAGGTTCTTGCGTTTGA+AGG - tig0001526:54848-54867 Msa1337340:CDS 40.0%
AAGAGGTTCTTGCGTTTGAA+GGG - tig0001526:54849-54868 Msa1337340:CDS 40.0%
TGAAATGAACGTGTGCAAGA+CGG - tig0001526:54960-54979 Msa1337340:exon 40.0%
! TAGTGTGCTGTCACCCATTT+TGG - tig0001526:53342-53361 Msa1337340:three_prime_UTR 45.0%
ATGGAATTCCGAATGGCTAG+AGG - tig0001526:53494-53513 Msa1337340:three_prime_UTR 45.0%
! GTGGTGGGACTGAAATCTAA+GGG + tig0001526:54388-54407 None:intergenic 45.0%
TCAGTCTGACCGGAAATCAT+GGG + tig0001526:54430-54449 None:intergenic 45.0%
! GCCTGTCTTTTTGCACTTAC+TGG - tig0001526:54672-54691 Msa1337340:CDS 45.0%
!! AGAAGCATTCCAGTGGATGA+AGG - tig0001526:54698-54717 Msa1337340:CDS 45.0%
TGTTGCATACCTTCATCCAC+TGG + tig0001526:54710-54729 None:intergenic 45.0%
! TAGTGTGCTGTCACCCATTT+TGG - tig0001526:53342-53361 Msa1337340:three_prime_UTR 45.0%
ATGGAATTCCGAATGGCTAG+AGG - tig0001526:53494-53513 Msa1337340:three_prime_UTR 45.0%
! GTGGTGGGACTGAAATCTAA+GGG + tig0001526:54388-54407 None:intergenic 45.0%
TCAGTCTGACCGGAAATCAT+GGG + tig0001526:54430-54449 None:intergenic 45.0%
! GCCTGTCTTTTTGCACTTAC+TGG - tig0001526:54672-54691 Msa1337340:CDS 45.0%
!! AGAAGCATTCCAGTGGATGA+AGG - tig0001526:54698-54717 Msa1337340:CDS 45.0%
TGTTGCATACCTTCATCCAC+TGG + tig0001526:54710-54729 None:intergenic 45.0%
!! ATATAATTATATACAATTAT+AGG - tig0001526:53934-53953 Msa1337340:intron 5.0%
!! AAATTTAAAAAAAAAAAAAC+AGG + tig0001526:55046-55065 None:intergenic 5.0%
!! ATATAATTATATACAATTAT+AGG - tig0001526:53934-53953 Msa1337340:intron 5.0%
!! AAATTTAAAAAAAAAAAAAC+AGG + tig0001526:55046-55065 None:intergenic 5.0%
TTAATCCACGGGTATGGTCG+TGG + tig0001526:53312-53331 None:intergenic 50.0%
AATGGGTGACAGCACACTAC+TGG + tig0001526:53341-53360 None:intergenic 50.0%
! TGTGCTGTCACCCATTTTGG+AGG - tig0001526:53345-53364 Msa1337340:three_prime_UTR 50.0%
TATGTGACATCTGCAGCTGC+TGG - tig0001526:53757-53776 Msa1337340:CDS 50.0%
ATGTGACATCTGCAGCTGCT+GGG - tig0001526:53758-53777 Msa1337340:CDS 50.0%
TTGAATGACAGGGACCCAGT+AGG - tig0001526:54112-54131 Msa1337340:intron 50.0%
!! GGTGGTGGGACTGAAATCTA+AGG + tig0001526:54389-54408 None:intergenic 50.0%
CAGTCTGACCGGAAATCATG+GGG + tig0001526:54429-54448 None:intergenic 50.0%
CTCAGTCTGACCGGAAATCA+TGG + tig0001526:54431-54450 None:intergenic 50.0%
!! CTGGATCAGAAGCATTCCAG+TGG - tig0001526:54691-54710 Msa1337340:CDS 50.0%
TGAACGTGTGCAAGACGGAT+AGG - tig0001526:54965-54984 Msa1337340:exon 50.0%
GCAAGACGGATAGGTACACA+TGG - tig0001526:54974-54993 Msa1337340:five_prime_UTR 50.0%
TTAATCCACGGGTATGGTCG+TGG + tig0001526:53312-53331 None:intergenic 50.0%
AATGGGTGACAGCACACTAC+TGG + tig0001526:53341-53360 None:intergenic 50.0%
! TGTGCTGTCACCCATTTTGG+AGG - tig0001526:53345-53364 Msa1337340:three_prime_UTR 50.0%
TATGTGACATCTGCAGCTGC+TGG - tig0001526:53757-53776 Msa1337340:CDS 50.0%
ATGTGACATCTGCAGCTGCT+GGG - tig0001526:53758-53777 Msa1337340:CDS 50.0%
TTGAATGACAGGGACCCAGT+AGG - tig0001526:54112-54131 Msa1337340:intron 50.0%
!! GGTGGTGGGACTGAAATCTA+AGG + tig0001526:54389-54408 None:intergenic 50.0%
CAGTCTGACCGGAAATCATG+GGG + tig0001526:54429-54448 None:intergenic 50.0%
CTCAGTCTGACCGGAAATCA+TGG + tig0001526:54431-54450 None:intergenic 50.0%
!! CTGGATCAGAAGCATTCCAG+TGG - tig0001526:54691-54710 Msa1337340:CDS 50.0%
TGAACGTGTGCAAGACGGAT+AGG - tig0001526:54965-54984 Msa1337340:exon 50.0%
GCAAGACGGATAGGTACACA+TGG - tig0001526:54974-54993 Msa1337340:five_prime_UTR 50.0%
TGCGGAAATCATGGGGTGGT+GGG + tig0001526:54403-54422 None:intergenic 55.0%
TGGGGTGGTGCGGAAATCAT+GGG + tig0001526:54411-54430 None:intergenic 55.0%
ATGGGGTGGTGCGGAAATCA+TGG + tig0001526:54412-54431 None:intergenic 55.0%
TCTGACCGGAAATCATGGGG+TGG + tig0001526:54426-54445 None:intergenic 55.0%
TGCGGAAATCATGGGGTGGT+GGG + tig0001526:54403-54422 None:intergenic 55.0%
TGGGGTGGTGCGGAAATCAT+GGG + tig0001526:54411-54430 None:intergenic 55.0%
ATGGGGTGGTGCGGAAATCA+TGG + tig0001526:54412-54431 None:intergenic 55.0%
TCTGACCGGAAATCATGGGG+TGG + tig0001526:54426-54445 None:intergenic 55.0%
ATCCACCACGACCATACCCG+TGG - tig0001526:53304-53323 Msa1337340:three_prime_UTR 60.0%
ATCCACGGGTATGGTCGTGG+TGG + tig0001526:53309-53328 None:intergenic 60.0%
GTGCGGAAATCATGGGGTGG+TGG + tig0001526:54404-54423 None:intergenic 60.0%
GTGGTGCGGAAATCATGGGG+TGG + tig0001526:54407-54426 None:intergenic 60.0%
GGGGTGGTGCGGAAATCATG+GGG + tig0001526:54410-54429 None:intergenic 60.0%
CCGGAAATCATGGGGTGGTG+CGG + tig0001526:54421-54440 None:intergenic 60.0%
CCGCACCACCCCATGATTTC+CGG - tig0001526:54418-54437 Msa1337340:intron 60.0%
ATCCACCACGACCATACCCG+TGG - tig0001526:53304-53323 Msa1337340:three_prime_UTR 60.0%
ATCCACGGGTATGGTCGTGG+TGG + tig0001526:53309-53328 None:intergenic 60.0%
GTGCGGAAATCATGGGGTGG+TGG + tig0001526:54404-54423 None:intergenic 60.0%
GTGGTGCGGAAATCATGGGG+TGG + tig0001526:54407-54426 None:intergenic 60.0%
GGGGTGGTGCGGAAATCATG+GGG + tig0001526:54410-54429 None:intergenic 60.0%
CCGGAAATCATGGGGTGGTG+CGG + tig0001526:54421-54440 None:intergenic 60.0%
CCGCACCACCCCATGATTTC+CGG - tig0001526:54418-54437 Msa1337340:intron 60.0%
Chromosome Type Strat End Strand Name
tig0001526 gene 53301 55164 53301 ID=Msa1337340;Name=Msa1337340
tig0001526 mRNA 53301 55164 53301 ID=Msa1337340-mRNA-1;Parent=Msa1337340;Name=Msa1337340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=193|1|1|1|1|1|3|286|184
tig0001526 exon 53301 53838 53301 ID=Msa1337340-mRNA-1:exon:1116;Parent=Msa1337340-mRNA-1
tig0001526 exon 54574 54718 54574 ID=Msa1337340-mRNA-1:exon:1115;Parent=Msa1337340-mRNA-1
tig0001526 exon 54814 55164 54814 ID=Msa1337340-mRNA-1:exon:1114;Parent=Msa1337340-mRNA-1
tig0001526 five_prime_UTR 54972 55164 54972 ID=Msa1337340-mRNA-1:five_prime_utr;Parent=Msa1337340-mRNA-1
tig0001526 CDS 54814 54971 54814 ID=Msa1337340-mRNA-1:cds;Parent=Msa1337340-mRNA-1
tig0001526 CDS 54574 54718 54574 ID=Msa1337340-mRNA-1:cds;Parent=Msa1337340-mRNA-1
tig0001526 CDS 53587 53838 53587 ID=Msa1337340-mRNA-1:cds;Parent=Msa1337340-mRNA-1
tig0001526 three_prime_UTR 53301 53586 53301 ID=Msa1337340-mRNA-1:three_prime_utr;Parent=Msa1337340-mRNA-1
Gene Sequence

>Msa1337340

ATGGAATTCCGAATGGCTAGAGGAGAAGTTTTGCTAAGAGTTTCAGCAATATTGTTCTTAGTATCAACAGCTTGTATAGTTGCTTTTGATACTGAAACAAAGGTTGTAATATTAACGATTAAGAAGAAAGCTACTTACAAGGACTTGGATGCTCTCAAGATCTTGTTGTATGTGACATCTGCAGCTGCTGGGTATAACATGCTTCAATTATGCAAACACTCTTTCTCAGCTTGTCCTACAATACGGAATTTCAATGGTTCTTATTATATGCACATGGCTTGGATTAGTTTCTTATTAGATCAGATTGTTGTGTACTTGACATTCGCCATAAACACTTCAGCATTTGAAGCCTGTCTTTTTGCACTTACTGGATCAGAAGCATTCCAGTGGATGAAGGTATGCAACAAATTCACCAGATTCTGCTACCAAATTGGAGGGGCATTATTATGCTGCTATATAGCATCCATTTTAATGGCTATGATATCAACTATCTCAGCTTACAAAGTTTTAAGAATGTACTCTCCAAAGAGGTTCTTGCGTTTGAAGGGAAAATGA

Protein sequence

>Msa1337340

MEFRMARGEVLLRVSAILFLVSTACIVAFDTETKVVILTIKKKATYKDLDALKILLYVTSAAAGYNMLQLCKHSFSACPTIRNFNGSYYMHMAWISFLLDQIVVYLTFAINTSAFEACLFALTGSEAFQWMKVCNKFTRFCYQIGGALLCCYIASILMAMISTISAYKVLRMYSPKRFLRLKGK*