AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581340 MtrunA17_Chr4g0072591 97.283 184 5 0 1 184 1 184 7.35e-132 367
Msa0581340 MtrunA17_Chr2g0290281 31.073 177 117 2 1 177 4 175 3.22e-23 90.9
Msa0581340 MtrunA17_Chr7g0231191 25.989 177 114 3 6 176 10 175 9.99e-12 60.8
Msa0581340 MtrunA17_Chr3g0109681 25.385 130 87 1 45 174 77 196 2.38e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581340 AT4G25830.1 39.444 180 100 2 4 183 3 173 1.26e-41 138
Msa0581340 AT4G16442.1 33.516 182 112 3 1 180 4 178 8.62e-23 90.1
Msa0581340 AT2G35760.1 32.749 171 106 3 9 177 31 194 5.65e-20 83.6
Msa0581340 AT1G17200.1 23.977 171 117 3 9 179 34 191 6.44e-12 62.0

Find 48 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAATTGGAGATCATTTA+TGG 0.186265 4_1:+86727244 None:intergenic
TAGTGTGCTGTCACCCATTT+TGG 0.253259 4_1:-86727295 Msa0581340:five_prime_UTR
ACCAGATTCTGCTACCAAAT+TGG 0.256996 4_1:-86726163 Msa0581340:CDS
CATATACAGTGCCTCCAAAA+TGG 0.268682 4_1:+86727281 None:intergenic
TGACAAATTCAAACAATATT+AGG 0.291725 4_1:+86725883 None:intergenic
TTCAAACGCAAGAACCTCTT+TGG 0.298843 4_1:+86726052 None:intergenic
TCCAATTTGGTAGCAGAATC+TGG 0.345220 4_1:+86726162 None:intergenic
TGATATCATAGCCATTAAAA+TGG 0.349665 4_1:+86726111 None:intergenic
ATAATAATGCCCCTCCAATT+TGG 0.356813 4_1:+86726149 None:intergenic
CCATTGAAATTCCGTATTGT+AGG 0.365530 4_1:+86726814 None:intergenic
CACATGGTTGCATTTATTGT+TGG 0.378064 4_1:-86725908 Msa0581340:three_prime_UTR
TATGTGACATCTGCAGCTGC+TGG 0.381099 4_1:-86726880 Msa0581340:CDS
CATTTATGGAATGTAAGATA+TGG 0.418755 4_1:+86727258 None:intergenic
AAAGAGGTTCTTGCGTTTGA+AGG 0.419436 4_1:-86726050 Msa0581340:CDS
TTCTAAATTTCAGTGCCAAT+TGG 0.422565 4_1:+86727231 None:intergenic
CCTACAATACGGAATTTCAA+TGG 0.448706 4_1:-86726814 Msa0581340:CDS
CTTATTATATGCACATGGCT+TGG 0.454545 4_1:-86726789 Msa0581340:CDS
GATTAGTTTCTTATTAGATC+AGG 0.461935 4_1:-86726767 Msa0581340:intron
TTCCATAAATGATCTCCAAT+TGG 0.472474 4_1:-86727246 Msa0581340:five_prime_UTR
TCTCAGCTTGTCCTACAATA+CGG 0.494365 4_1:-86726825 Msa0581340:CDS
AAACTTCTCCTCTAGCCATT+CGG 0.500585 4_1:+86727135 None:intergenic
ATATACAGTGCCTCCAAAAT+GGG 0.500643 4_1:+86727282 None:intergenic
TGTTGCATACCTTCATCCAC+TGG 0.513091 4_1:+86726191 None:intergenic
GAAAGCTACTTACAAGGACT+TGG 0.522093 4_1:-86727018 Msa0581340:CDS
AAGAGGTTCTTGCGTTTGAA+GGG 0.528514 4_1:-86726049 Msa0581340:CDS
AATGGGTGACAGCACACTAC+TGG 0.532835 4_1:+86727299 None:intergenic
TTCAAATGCTGAAGTGTTTG+TGG 0.537098 4_1:+86726249 None:intergenic
TAAGAATGTACTCTCCAAAG+AGG 0.537196 4_1:-86726066 Msa0581340:CDS
ATGTGACATCTGCAGCTGCT+GGG 0.542822 4_1:-86726879 Msa0581340:CDS
AGATTCTGCTACCAAATTGG+AGG 0.555285 4_1:-86726160 Msa0581340:CDS
TTAGAATTAATCCACGGGTA+TGG 0.557256 4_1:+86727322 None:intergenic
AGAAGCATTCCAGTGGATGA+AGG 0.566952 4_1:-86726200 Msa0581340:CDS
GATTCTGCTACCAAATTGGA+GGG 0.570432 4_1:-86726159 Msa0581340:CDS
TTAATCCACGGGTATGGTCA+TGG 0.573893 4_1:+86727328 None:intergenic
TGAACGTGTGCAAGACGGAT+AGG 0.579809 4_1:-86725933 Msa0581340:three_prime_UTR
TACTGGTTAGAATTAATCCA+CGG 0.581828 4_1:+86727316 None:intergenic
TAAGAAGAAAGCTACTTACA+AGG 0.592857 4_1:-86727024 Msa0581340:CDS
TGGTTCTTATTATATGCACA+TGG 0.599744 4_1:-86726794 Msa0581340:CDS
TGAAGAAATGGAATTCCGAA+TGG 0.602583 4_1:-86727150 Msa0581340:exon
TGAAATGAACGTGTGCAAGA+CGG 0.625599 4_1:-86725938 Msa0581340:three_prime_UTR
ATGGAATTCCGAATGGCTAG+AGG 0.629083 4_1:-86727143 Msa0581340:CDS
ATATGTGTGAAATTTACCAC+AGG 0.646110 4_1:-86725980 Msa0581340:three_prime_UTR
ACTGGTTAGAATTAATCCAC+GGG 0.647477 4_1:+86727317 None:intergenic
ATCCACCATGACCATACCCG+TGG 0.647886 4_1:-86727333 Msa0581340:five_prime_UTR
CTGGATCAGAAGCATTCCAG+TGG 0.661575 4_1:-86726207 Msa0581340:CDS
ATTCTGCTACCAAATTGGAG+GGG 0.694887 4_1:-86726158 Msa0581340:CDS
ATCCACGGGTATGGTCATGG+TGG 0.709467 4_1:+86727331 None:intergenic
GCAAGACGGATAGGTACACA+TGG 0.710290 4_1:-86725924 Msa0581340:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTTTTAATTTTTTTGAT+AGG - chr4_1:86725884-86725903 Msa0581340:three_prime_UTR 10.0%
!!! CAAGTTTTTTTTTTTTTTTA+AGG - chr4_1:86727296-86727315 Msa0581340:five_prime_UTR 10.0%
!!! ACATTTTTAATTTTTTTGAT+AGG - chr4_1:86725884-86725903 Msa0581340:three_prime_UTR 10.0%
!!! CAAGTTTTTTTTTTTTTTTA+AGG - chr4_1:86727296-86727315 Msa0581340:five_prime_UTR 10.0%
!!! ATTTTTTTGATAGGATATAT+AGG - chr4_1:86725893-86725912 Msa0581340:three_prime_UTR 15.0%
!!! GAATTTTTGTATGTTTTTTT+AGG - chr4_1:86726174-86726193 Msa0581340:CDS 15.0%
!! TACTTATACATGATAATATA+AGG - chr4_1:86726480-86726499 Msa0581340:intron 15.0%
!! AAAAATTAAAATTGAATGAC+AGG - chr4_1:86726550-86726569 Msa0581340:intron 15.0%
!! AAAATTAAAATTGAATGACA+GGG - chr4_1:86726551-86726570 Msa0581340:intron 15.0%
!!! AAAAAGATAATCATTTTGTT+TGG - chr4_1:86726587-86726606 Msa0581340:intron 15.0%
!!! ATTTTTTTGATAGGATATAT+AGG - chr4_1:86725893-86725912 Msa0581340:three_prime_UTR 15.0%
!!! GAATTTTTGTATGTTTTTTT+AGG - chr4_1:86726174-86726193 Msa0581340:CDS 15.0%
!! TACTTATACATGATAATATA+AGG - chr4_1:86726480-86726499 Msa0581340:intron 15.0%
!! AAAAATTAAAATTGAATGAC+AGG - chr4_1:86726550-86726569 Msa0581340:intron 15.0%
!! AAAATTAAAATTGAATGACA+GGG - chr4_1:86726551-86726570 Msa0581340:intron 15.0%
!!! AAAAAGATAATCATTTTGTT+TGG - chr4_1:86726587-86726606 Msa0581340:intron 15.0%
!! TGACAAATTCAAACAATATT+AGG + chr4_1:86727206-86727225 None:intergenic 20.0%
!! TGACAAATTCAAACAATATT+AGG + chr4_1:86727206-86727225 None:intergenic 20.0%
! CATTTATGGAATGTAAGATA+TGG + chr4_1:86725831-86725850 None:intergenic 25.0%
!!! AATTTTCATCTCTGAAGAAA+TGG - chr4_1:86725924-86725943 Msa0581340:three_prime_UTR 25.0%
! AGAGAACAAACAAATAAAGA+GGG + chr4_1:86726114-86726133 None:intergenic 25.0%
! ATATACCATGATCTTGAATT+AGG - chr4_1:86726152-86726171 Msa0581340:CDS 25.0%
! AAATTCCTAATTCAAGATCA+TGG + chr4_1:86726160-86726179 None:intergenic 25.0%
!!! GATTAGTTTCTTATTAGATC+AGG - chr4_1:86726319-86726338 Msa0581340:intron 25.0%
! TACTCGAATCAAAATAAACT+TGG - chr4_1:86726454-86726473 Msa0581340:intron 25.0%
! TCATTTCCTCTTCAAAAATT+AGG - chr4_1:86726507-86726526 Msa0581340:intron 25.0%
!! ATTATCTTTTTCTTCCTACT+GGG + chr4_1:86726578-86726597 None:intergenic 25.0%
! CCAAATGATTATTTCAATCA+AGG + chr4_1:86726772-86726791 None:intergenic 25.0%
! CCTTGATTGAAATAATCATT+TGG - chr4_1:86726769-86726788 Msa0581340:CDS 25.0%
! AATAATCATTTGGCAAATCT+TGG - chr4_1:86726779-86726798 Msa0581340:CDS 25.0%
!! CTATATAGCATCCATTTTAA+TGG - chr4_1:86726964-86726983 Msa0581340:intron 25.0%
! TGATATCATAGCCATTAAAA+TGG + chr4_1:86726978-86726997 None:intergenic 25.0%
!!! TTTTCATTTTTTACTTCCTG+TGG + chr4_1:86727125-86727144 None:intergenic 25.0%
! CATTTATGGAATGTAAGATA+TGG + chr4_1:86725831-86725850 None:intergenic 25.0%
!!! AATTTTCATCTCTGAAGAAA+TGG - chr4_1:86725924-86725943 Msa0581340:three_prime_UTR 25.0%
! AGAGAACAAACAAATAAAGA+GGG + chr4_1:86726114-86726133 None:intergenic 25.0%
! ATATACCATGATCTTGAATT+AGG - chr4_1:86726152-86726171 Msa0581340:CDS 25.0%
! AAATTCCTAATTCAAGATCA+TGG + chr4_1:86726160-86726179 None:intergenic 25.0%
!!! GATTAGTTTCTTATTAGATC+AGG - chr4_1:86726319-86726338 Msa0581340:intron 25.0%
! TACTCGAATCAAAATAAACT+TGG - chr4_1:86726454-86726473 Msa0581340:intron 25.0%
! TCATTTCCTCTTCAAAAATT+AGG - chr4_1:86726507-86726526 Msa0581340:intron 25.0%
!! ATTATCTTTTTCTTCCTACT+GGG + chr4_1:86726578-86726597 None:intergenic 25.0%
! CCAAATGATTATTTCAATCA+AGG + chr4_1:86726772-86726791 None:intergenic 25.0%
! CCTTGATTGAAATAATCATT+TGG - chr4_1:86726769-86726788 Msa0581340:CDS 25.0%
! AATAATCATTTGGCAAATCT+TGG - chr4_1:86726779-86726798 Msa0581340:CDS 25.0%
!! CTATATAGCATCCATTTTAA+TGG - chr4_1:86726964-86726983 Msa0581340:intron 25.0%
! TGATATCATAGCCATTAAAA+TGG + chr4_1:86726978-86726997 None:intergenic 25.0%
!!! TTTTCATTTTTTACTTCCTG+TGG + chr4_1:86727125-86727144 None:intergenic 25.0%
! TACTGGTTAGAATTAATCCA+CGG + chr4_1:86725773-86725792 None:intergenic 30.0%
TTCCATAAATGATCTCCAAT+TGG - chr4_1:86725840-86725859 Msa0581340:three_prime_UTR 30.0%
TTCTAAATTTCAGTGCCAAT+TGG + chr4_1:86725858-86725877 None:intergenic 30.0%
! TGCTTTTGATACTGAAACAA+AGG - chr4_1:86726023-86726042 Msa0581340:exon 30.0%
TAAGAAGAAAGCTACTTACA+AGG - chr4_1:86726062-86726081 Msa0581340:CDS 30.0%
GAGAGAACAAACAAATAAAG+AGG + chr4_1:86726115-86726134 None:intergenic 30.0%
TGGTTCTTATTATATGCACA+TGG - chr4_1:86726292-86726311 Msa0581340:intron 30.0%
AAGTAAGCTCAAATCCAATT+AGG - chr4_1:86726431-86726450 Msa0581340:intron 30.0%
!! TTTTGATTCGAGTACCTAAT+TGG + chr4_1:86726448-86726467 None:intergenic 30.0%
!! GAGATACCTAATTTTTGAAG+AGG + chr4_1:86726516-86726535 None:intergenic 30.0%
! GATTATCTTTTTCTTCCTAC+TGG + chr4_1:86726579-86726598 None:intergenic 30.0%
GCATAACTCTTAAAGTAGTT+AGG - chr4_1:86726679-86726698 Msa0581340:intron 30.0%
ATATGTGTGAAATTTACCAC+AGG - chr4_1:86727106-86727125 Msa0581340:CDS 30.0%
! TACTGGTTAGAATTAATCCA+CGG + chr4_1:86725773-86725792 None:intergenic 30.0%
TTCCATAAATGATCTCCAAT+TGG - chr4_1:86725840-86725859 Msa0581340:three_prime_UTR 30.0%
TTCTAAATTTCAGTGCCAAT+TGG + chr4_1:86725858-86725877 None:intergenic 30.0%
! TGCTTTTGATACTGAAACAA+AGG - chr4_1:86726023-86726042 Msa0581340:exon 30.0%
TAAGAAGAAAGCTACTTACA+AGG - chr4_1:86726062-86726081 Msa0581340:CDS 30.0%
GAGAGAACAAACAAATAAAG+AGG + chr4_1:86726115-86726134 None:intergenic 30.0%
TGGTTCTTATTATATGCACA+TGG - chr4_1:86726292-86726311 Msa0581340:intron 30.0%
AAGTAAGCTCAAATCCAATT+AGG - chr4_1:86726431-86726450 Msa0581340:intron 30.0%
!! TTTTGATTCGAGTACCTAAT+TGG + chr4_1:86726448-86726467 None:intergenic 30.0%
!! GAGATACCTAATTTTTGAAG+AGG + chr4_1:86726516-86726535 None:intergenic 30.0%
! GATTATCTTTTTCTTCCTAC+TGG + chr4_1:86726579-86726598 None:intergenic 30.0%
GCATAACTCTTAAAGTAGTT+AGG - chr4_1:86726679-86726698 Msa0581340:intron 30.0%
ATATGTGTGAAATTTACCAC+AGG - chr4_1:86727106-86727125 Msa0581340:CDS 30.0%
TTAGAATTAATCCACGGGTA+TGG + chr4_1:86725767-86725786 None:intergenic 35.0%
ACTGGTTAGAATTAATCCAC+GGG + chr4_1:86725772-86725791 None:intergenic 35.0%
ATATACAGTGCCTCCAAAAT+GGG + chr4_1:86725807-86725826 None:intergenic 35.0%
TGCCAATTGGAGATCATTTA+TGG + chr4_1:86725845-86725864 None:intergenic 35.0%
TGAAGAAATGGAATTCCGAA+TGG - chr4_1:86725936-86725955 Msa0581340:three_prime_UTR 35.0%
CCATTGAAATTCCGTATTGT+AGG + chr4_1:86726275-86726294 None:intergenic 35.0%
CCTACAATACGGAATTTCAA+TGG - chr4_1:86726272-86726291 Msa0581340:CDS 35.0%
CTTATTATATGCACATGGCT+TGG - chr4_1:86726297-86726316 Msa0581340:intron 35.0%
! TTCAAATGCTGAAGTGTTTG+TGG + chr4_1:86726840-86726859 None:intergenic 35.0%
ATAATAATGCCCCTCCAATT+TGG + chr4_1:86726940-86726959 None:intergenic 35.0%
TAAGAATGTACTCTCCAAAG+AGG - chr4_1:86727020-86727039 Msa0581340:CDS 35.0%
CACATGGTTGCATTTATTGT+TGG - chr4_1:86727178-86727197 Msa0581340:five_prime_UTR 35.0%
TTAGAATTAATCCACGGGTA+TGG + chr4_1:86725767-86725786 None:intergenic 35.0%
ACTGGTTAGAATTAATCCAC+GGG + chr4_1:86725772-86725791 None:intergenic 35.0%
ATATACAGTGCCTCCAAAAT+GGG + chr4_1:86725807-86725826 None:intergenic 35.0%
TGCCAATTGGAGATCATTTA+TGG + chr4_1:86725845-86725864 None:intergenic 35.0%
TGAAGAAATGGAATTCCGAA+TGG - chr4_1:86725936-86725955 Msa0581340:three_prime_UTR 35.0%
CCATTGAAATTCCGTATTGT+AGG + chr4_1:86726275-86726294 None:intergenic 35.0%
CCTACAATACGGAATTTCAA+TGG - chr4_1:86726272-86726291 Msa0581340:CDS 35.0%
CTTATTATATGCACATGGCT+TGG - chr4_1:86726297-86726316 Msa0581340:intron 35.0%
! TTCAAATGCTGAAGTGTTTG+TGG + chr4_1:86726840-86726859 None:intergenic 35.0%
ATAATAATGCCCCTCCAATT+TGG + chr4_1:86726940-86726959 None:intergenic 35.0%
TAAGAATGTACTCTCCAAAG+AGG - chr4_1:86727020-86727039 Msa0581340:CDS 35.0%
CACATGGTTGCATTTATTGT+TGG - chr4_1:86727178-86727197 Msa0581340:five_prime_UTR 35.0%
CATATACAGTGCCTCCAAAA+TGG + chr4_1:86725808-86725827 None:intergenic 40.0%
AAACTTCTCCTCTAGCCATT+CGG + chr4_1:86725954-86725973 None:intergenic 40.0%
GAAAGCTACTTACAAGGACT+TGG - chr4_1:86726068-86726087 Msa0581340:CDS 40.0%
TCTCAGCTTGTCCTACAATA+CGG - chr4_1:86726261-86726280 Msa0581340:CDS 40.0%
TCCAGTAAGTGCAAAAAGAC+AGG + chr4_1:86726864-86726883 None:intergenic 40.0%
ACCAGATTCTGCTACCAAAT+TGG - chr4_1:86726923-86726942 Msa0581340:intron 40.0%
! TCCAATTTGGTAGCAGAATC+TGG + chr4_1:86726927-86726946 None:intergenic 40.0%
AGATTCTGCTACCAAATTGG+AGG - chr4_1:86726926-86726945 Msa0581340:intron 40.0%
GATTCTGCTACCAAATTGGA+GGG - chr4_1:86726927-86726946 Msa0581340:intron 40.0%
ATTCTGCTACCAAATTGGAG+GGG - chr4_1:86726928-86726947 Msa0581340:intron 40.0%
TTCAAACGCAAGAACCTCTT+TGG + chr4_1:86727037-86727056 None:intergenic 40.0%
AAAGAGGTTCTTGCGTTTGA+AGG - chr4_1:86727036-86727055 Msa0581340:CDS 40.0%
AAGAGGTTCTTGCGTTTGAA+GGG - chr4_1:86727037-86727056 Msa0581340:CDS 40.0%
TGAAATGAACGTGTGCAAGA+CGG - chr4_1:86727148-86727167 Msa0581340:exon 40.0%
CATATACAGTGCCTCCAAAA+TGG + chr4_1:86725808-86725827 None:intergenic 40.0%
AAACTTCTCCTCTAGCCATT+CGG + chr4_1:86725954-86725973 None:intergenic 40.0%
GAAAGCTACTTACAAGGACT+TGG - chr4_1:86726068-86726087 Msa0581340:CDS 40.0%
TCTCAGCTTGTCCTACAATA+CGG - chr4_1:86726261-86726280 Msa0581340:CDS 40.0%
TCCAGTAAGTGCAAAAAGAC+AGG + chr4_1:86726864-86726883 None:intergenic 40.0%
ACCAGATTCTGCTACCAAAT+TGG - chr4_1:86726923-86726942 Msa0581340:intron 40.0%
! TCCAATTTGGTAGCAGAATC+TGG + chr4_1:86726927-86726946 None:intergenic 40.0%
AGATTCTGCTACCAAATTGG+AGG - chr4_1:86726926-86726945 Msa0581340:intron 40.0%
GATTCTGCTACCAAATTGGA+GGG - chr4_1:86726927-86726946 Msa0581340:intron 40.0%
ATTCTGCTACCAAATTGGAG+GGG - chr4_1:86726928-86726947 Msa0581340:intron 40.0%
TTCAAACGCAAGAACCTCTT+TGG + chr4_1:86727037-86727056 None:intergenic 40.0%
AAAGAGGTTCTTGCGTTTGA+AGG - chr4_1:86727036-86727055 Msa0581340:CDS 40.0%
AAGAGGTTCTTGCGTTTGAA+GGG - chr4_1:86727037-86727056 Msa0581340:CDS 40.0%
TGAAATGAACGTGTGCAAGA+CGG - chr4_1:86727148-86727167 Msa0581340:exon 40.0%
TTAATCCACGGGTATGGTCA+TGG + chr4_1:86725761-86725780 None:intergenic 45.0%
! TAGTGTGCTGTCACCCATTT+TGG - chr4_1:86725791-86725810 Msa0581340:three_prime_UTR 45.0%
ATGGAATTCCGAATGGCTAG+AGG - chr4_1:86725943-86725962 Msa0581340:three_prime_UTR 45.0%
! GCCTGTCTTTTTGCACTTAC+TGG - chr4_1:86726860-86726879 Msa0581340:CDS 45.0%
!! AGAAGCATTCCAGTGGATGA+AGG - chr4_1:86726886-86726905 Msa0581340:CDS 45.0%
TGTTGCATACCTTCATCCAC+TGG + chr4_1:86726898-86726917 None:intergenic 45.0%
TTAATCCACGGGTATGGTCA+TGG + chr4_1:86725761-86725780 None:intergenic 45.0%
! TAGTGTGCTGTCACCCATTT+TGG - chr4_1:86725791-86725810 Msa0581340:three_prime_UTR 45.0%
ATGGAATTCCGAATGGCTAG+AGG - chr4_1:86725943-86725962 Msa0581340:three_prime_UTR 45.0%
! GCCTGTCTTTTTGCACTTAC+TGG - chr4_1:86726860-86726879 Msa0581340:CDS 45.0%
!! AGAAGCATTCCAGTGGATGA+AGG - chr4_1:86726886-86726905 Msa0581340:CDS 45.0%
TGTTGCATACCTTCATCCAC+TGG + chr4_1:86726898-86726917 None:intergenic 45.0%
!! ATATAATTATATACAATTAT+AGG - chr4_1:86726383-86726402 Msa0581340:intron 5.0%
!! AAAAAAAAAAAAAAAAAAAC+AGG + chr4_1:86727234-86727253 None:intergenic 5.0%
!! ATATAATTATATACAATTAT+AGG - chr4_1:86726383-86726402 Msa0581340:intron 5.0%
!! AAAAAAAAAAAAAAAAAAAC+AGG + chr4_1:86727234-86727253 None:intergenic 5.0%
AATGGGTGACAGCACACTAC+TGG + chr4_1:86725790-86725809 None:intergenic 50.0%
! TGTGCTGTCACCCATTTTGG+AGG - chr4_1:86725794-86725813 Msa0581340:three_prime_UTR 50.0%
TATGTGACATCTGCAGCTGC+TGG - chr4_1:86726206-86726225 Msa0581340:CDS 50.0%
ATGTGACATCTGCAGCTGCT+GGG - chr4_1:86726207-86726226 Msa0581340:CDS 50.0%
TTGAATGACAGGGACCCAGT+AGG - chr4_1:86726561-86726580 Msa0581340:intron 50.0%
!! CTGGATCAGAAGCATTCCAG+TGG - chr4_1:86726879-86726898 Msa0581340:CDS 50.0%
TGAACGTGTGCAAGACGGAT+AGG - chr4_1:86727153-86727172 Msa0581340:exon 50.0%
GCAAGACGGATAGGTACACA+TGG - chr4_1:86727162-86727181 Msa0581340:exon 50.0%
AATGGGTGACAGCACACTAC+TGG + chr4_1:86725790-86725809 None:intergenic 50.0%
! TGTGCTGTCACCCATTTTGG+AGG - chr4_1:86725794-86725813 Msa0581340:three_prime_UTR 50.0%
TATGTGACATCTGCAGCTGC+TGG - chr4_1:86726206-86726225 Msa0581340:CDS 50.0%
ATGTGACATCTGCAGCTGCT+GGG - chr4_1:86726207-86726226 Msa0581340:CDS 50.0%
TTGAATGACAGGGACCCAGT+AGG - chr4_1:86726561-86726580 Msa0581340:intron 50.0%
!! CTGGATCAGAAGCATTCCAG+TGG - chr4_1:86726879-86726898 Msa0581340:CDS 50.0%
TGAACGTGTGCAAGACGGAT+AGG - chr4_1:86727153-86727172 Msa0581340:exon 50.0%
GCAAGACGGATAGGTACACA+TGG - chr4_1:86727162-86727181 Msa0581340:exon 50.0%
ATCCACCATGACCATACCCG+TGG - chr4_1:86725753-86725772 Msa0581340:three_prime_UTR 55.0%
ATCCACGGGTATGGTCATGG+TGG + chr4_1:86725758-86725777 None:intergenic 55.0%
ATCCACCATGACCATACCCG+TGG - chr4_1:86725753-86725772 Msa0581340:three_prime_UTR 55.0%
ATCCACGGGTATGGTCATGG+TGG + chr4_1:86725758-86725777 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86725750 86727358 86725750 ID=Msa0581340;Name=Msa0581340
chr4_1 mRNA 86725750 86727358 86725750 ID=Msa0581340-mRNA-1;Parent=Msa0581340;Name=Msa0581340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=193|1|1|1|1|1|3|292|184
chr4_1 exon 86725750 86726293 86725750 ID=Msa0581340-mRNA-1:exon:32152;Parent=Msa0581340-mRNA-1
chr4_1 exon 86726768 86726912 86726768 ID=Msa0581340-mRNA-1:exon:32151;Parent=Msa0581340-mRNA-1
chr4_1 exon 86727008 86727358 86727008 ID=Msa0581340-mRNA-1:exon:32150;Parent=Msa0581340-mRNA-1
chr4_1 five_prime_UTR 86727166 86727358 86727166 ID=Msa0581340-mRNA-1:five_prime_utr;Parent=Msa0581340-mRNA-1
chr4_1 CDS 86727008 86727165 86727008 ID=Msa0581340-mRNA-1:cds;Parent=Msa0581340-mRNA-1
chr4_1 CDS 86726768 86726912 86726768 ID=Msa0581340-mRNA-1:cds;Parent=Msa0581340-mRNA-1
chr4_1 CDS 86726042 86726293 86726042 ID=Msa0581340-mRNA-1:cds;Parent=Msa0581340-mRNA-1
chr4_1 three_prime_UTR 86725750 86726041 86725750 ID=Msa0581340-mRNA-1:three_prime_utr;Parent=Msa0581340-mRNA-1
Gene Sequence

>Msa0581340

ATGGAATTCCGAATGGCTAGAGGAGAAGTTTTGCTAAGAGTTTCAGCAATATTGTTCTTAGTATCAACAGCTTGTATAGTTGCTTTTGATACTGAAACAAAGGTTGTAATATTAACGATTAAGAAGAAAGCTACTTACAAGGACTTGGATGCTCTCAAGATCTTGTTGTATGTGACATCTGCAGCTGCTGGGTATAACATGCTTCAATTATGCAAACACTCTTTCTCAGCTTGTCCTACAATACGGAATTTCAATGGTTCTTATTATATGCACATGGCTTGGATTAGTTTCTTATTAGATCAGATTGTTGTGTACTTGACATTCGCCACAAACACTTCAGCATTTGAAGCCTGTCTTTTTGCACTTACTGGATCAGAAGCATTCCAGTGGATGAAGGTATGCAACAAATTCACCAGATTCTGCTACCAAATTGGAGGGGCATTATTATGCTGCTATATAGCATCCATTTTAATGGCTATGATATCAACTATCTCAGCTTACAAAGTTTTAAGAATGTACTCTCCAAAGAGGTTCTTGCGTTTGAAGGGAAAATGA

Protein sequence

>Msa0581340

MEFRMARGEVLLRVSAILFLVSTACIVAFDTETKVVILTIKKKATYKDLDALKILLYVTSAAAGYNMLQLCKHSFSACPTIRNFNGSYYMHMAWISFLLDQIVVYLTFATNTSAFEACLFALTGSEAFQWMKVCNKFTRFCYQIGGALLCCYIASILMAMISTISAYKVLRMYSPKRFLRLKGK*