AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1105500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105500 MtrunA17_Chr7g0237691 90.076 393 1 2 1 392 1 356 0.0 659
Msa1105500 MtrunA17_Chr4g0063281 38.545 275 122 7 19 291 43 272 7.45e-58 192
Msa1105500 MtrunA17_Chr3g0115161 61.165 103 40 0 180 282 128 230 4.25e-38 139
Msa1105500 MtrunA17_Chr3g0115161 46.591 88 41 2 24 111 48 129 2.62e-16 79.0
Msa1105500 MtrunA17_Chr4g0051231 46.939 147 67 2 141 279 90 233 2.04e-36 136
Msa1105500 MtrunA17_Chr4g0051231 70.000 50 15 0 19 68 46 95 5.34e-19 87.8
Msa1105500 MtrunA17_Chr1g0148061 46.479 142 71 2 174 315 94 230 1.38e-33 127
Msa1105500 MtrunA17_Chr1g0148061 62.069 58 22 0 10 67 12 69 2.25e-16 79.3
Msa1105500 MtrunA17_Chr8g0378741 50.000 90 45 0 177 266 131 220 3.68e-25 106
Msa1105500 MtrunA17_Chr8g0378741 52.113 71 34 0 19 89 41 111 1.16e-17 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105500 AT3G24740.3 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1105500 AT3G24740.1 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1105500 AT3G24740.5 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1105500 AT3G24740.6 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1105500 AT3G24740.2 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1105500 AT3G24740.4 51.323 378 123 9 1 367 1 328 2.07e-113 335
Msa1105500 AT3G25910.1 36.965 257 139 4 19 275 36 269 2.00e-50 174
Msa1105500 AT4G31410.1 48.889 135 64 1 182 316 102 231 1.86e-35 132
Msa1105500 AT4G31410.1 55.357 56 23 1 22 77 30 83 1.95e-14 73.9
Msa1105500 AT4G31410.2 48.889 135 64 1 182 316 102 231 1.86e-35 132
Msa1105500 AT4G31410.2 55.357 56 23 1 22 77 30 83 1.95e-14 73.9
Msa1105500 AT4G31410.3 48.889 135 64 1 182 316 102 231 1.86e-35 132
Msa1105500 AT4G31410.3 55.357 56 23 1 22 77 30 83 1.95e-14 73.9
Msa1105500 AT4G08460.4 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1105500 AT4G08460.4 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1105500 AT4G08460.1 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1105500 AT4G08460.1 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1105500 AT4G08460.2 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1105500 AT4G08460.2 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1105500 AT4G08460.3 48.624 109 56 0 175 283 100 208 6.93e-33 124
Msa1105500 AT4G08460.3 51.786 56 25 1 24 77 47 102 5.22e-14 72.0
Msa1105500 AT1G68140.2 47.115 104 55 0 180 283 118 221 7.97e-30 117
Msa1105500 AT1G68140.2 68.000 50 16 0 19 68 48 97 1.31e-17 83.2
Msa1105500 AT1G68140.1 47.115 104 55 0 180 283 118 221 1.20e-29 117
Msa1105500 AT1G68140.1 68.000 50 16 0 19 68 48 97 1.48e-17 83.6
Msa1105500 AT1G68140.4 47.115 104 55 0 180 283 118 221 1.20e-29 117
Msa1105500 AT1G68140.4 68.000 50 16 0 19 68 48 97 1.48e-17 83.6
Msa1105500 AT1G68140.3 47.115 104 55 0 180 283 118 221 1.20e-29 117
Msa1105500 AT1G68140.3 68.000 50 16 0 19 68 48 97 1.48e-17 83.6
Msa1105500 AT1G77770.3 49.000 100 51 0 180 279 85 184 6.30e-27 108
Msa1105500 AT1G77770.3 55.556 54 24 0 19 72 24 77 3.10e-14 72.8
Msa1105500 AT1G77770.2 49.000 100 51 0 180 279 85 184 6.30e-27 108
Msa1105500 AT1G77770.2 55.556 54 24 0 19 72 24 77 3.10e-14 72.8
Msa1105500 AT1G77770.1 49.000 100 51 0 180 279 85 184 6.70e-27 108
Msa1105500 AT1G77770.1 50.000 66 32 1 19 83 24 89 2.80e-14 72.8
Msa1105500 AT2G26050.1 42.353 85 48 1 179 262 71 155 1.11e-16 79.0
Msa1105500 AT1G15430.1 39.535 86 52 0 179 264 106 191 1.50e-16 79.3
Msa1105500 AT1G15430.1 63.830 47 17 0 20 66 47 93 6.37e-14 71.6
Msa1105500 AT1G15430.2 39.535 86 52 0 179 264 106 191 1.50e-16 79.3
Msa1105500 AT1G15430.2 63.830 47 17 0 20 66 47 93 6.37e-14 71.6
Msa1105500 AT1G80220.1 39.806 103 59 2 179 280 100 200 2.49e-16 78.6
Msa1105500 AT1G80220.1 53.571 56 22 1 22 73 43 98 9.71e-12 65.1

Find 106 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAAGAACTTTGTAAATT+TGG 0.086986 7_3:+44016898 None:intergenic
CTGACCGTCGTCGCTATCTT+TGG 0.205802 7_3:-44016111 Msa1105500:CDS
CTCATTTGCTGGAGATTATC+TGG 0.236537 7_3:-44016485 Msa1105500:CDS
GGGGATTACGTTCTCGAAAA+TGG 0.268380 7_3:-44016307 Msa1105500:CDS
ACATTTGTGATACAAGTTAT+AGG 0.274353 7_3:-44016975 Msa1105500:CDS
CTATGTAGGGGCACAGTATT+AGG 0.283301 7_3:-44016577 Msa1105500:CDS
TTAAAGAACTTTGTAAATTT+GGG 0.285619 7_3:+44016899 None:intergenic
ATAGAGTATTAATTTCATTT+TGG 0.288715 7_3:+44016788 None:intergenic
CAATGGTGTTATCCATCATT+TGG 0.297444 7_3:+44016194 None:intergenic
TGACCGTCGTCGCTATCTTT+GGG 0.306879 7_3:-44016110 Msa1105500:CDS
ATAACACCATTGAAATTGTT+AGG 0.318676 7_3:-44016183 Msa1105500:CDS
TGCCACGCTTGTTCTCTTGT+CGG 0.342123 7_3:+44016406 None:intergenic
AGGGATTCATGCTCATTTGC+TGG 0.342371 7_3:-44016496 Msa1105500:CDS
TTTGAGCGCCAGAGAGAATA+TGG 0.354225 7_3:-44016379 Msa1105500:CDS
TACCAGGAGCTGTGGTAGTT+GGG 0.361459 7_3:-44016327 Msa1105500:CDS
CTAAATGTCTACTTGGATCT+TGG 0.362438 7_3:+44016725 None:intergenic
GTTTGCATTGTCCTCTATGT+AGG 0.375371 7_3:-44016591 Msa1105500:CDS
TACCAGGTGGTGGTAGGGAG+GGG 0.376072 7_3:-44016267 Msa1105500:CDS
CTTTGGGGTGAGAATTTGTT+GGG 0.387062 7_3:-44016094 Msa1105500:CDS
TCTACGAATATTTAATGAAC+TGG 0.389467 7_3:-44016044 Msa1105500:CDS
GTTAATATCAAAACTATTAC+CGG 0.394163 7_3:+44016858 None:intergenic
GCATGCTCTTCACAGAGAAT+TGG 0.394274 7_3:-44017085 Msa1105500:CDS
TTCAAACGACGGCGCCTCCT+TGG 0.409832 7_3:+44016001 None:intergenic
TTATAGGCATTCAAATTGTC+TGG 0.411863 7_3:-44016959 Msa1105500:CDS
TGCTGATTCTGAGAACTTGC+AGG 0.412339 7_3:-44016674 Msa1105500:CDS
ATAAACACTAACAACTCTTC+CGG 0.422488 7_3:-44016877 Msa1105500:CDS
ACTTTGCAGCTCTCATGATA+AGG 0.425611 7_3:-44017010 Msa1105500:CDS
ATTAATACTCTATTGTCTGT+TGG 0.425972 7_3:-44016778 Msa1105500:CDS
CCATTTGAAGAACGAGCTCT+TGG 0.431014 7_3:+44016157 None:intergenic
TCTTTGGGGTGAGAATTTGT+TGG 0.432599 7_3:-44016095 Msa1105500:CDS
CCAAGAGCTCGTTCTTCAAA+TGG 0.433577 7_3:-44016157 Msa1105500:CDS
ATTCTGAGAACTTGCAGGAC+AGG 0.434425 7_3:-44016669 Msa1105500:CDS
TAAATGTCTACTTGGATCTT+GGG 0.439889 7_3:+44016726 None:intergenic
TTTGCATTGTCCTCTATGTA+GGG 0.447980 7_3:-44016590 Msa1105500:CDS
CACCATCTTGTTCCAAATGA+TGG 0.449976 7_3:-44016206 Msa1105500:CDS
TCAAACGACGGCGCCTCCTT+GGG 0.458119 7_3:+44016002 None:intergenic
TGGTTCCCTAACAATTTCAA+TGG 0.459007 7_3:+44016177 None:intergenic
CTTTGCAGCTCTCATGATAA+GGG 0.464712 7_3:-44017009 Msa1105500:CDS
GGAGGCGCCGTCGTTTGAAT+AGG 0.466130 7_3:-44015997 Msa1105500:CDS
GTTACCAGGTGGTGGTAGGG+AGG 0.472492 7_3:-44016269 Msa1105500:CDS
TAACACCATTGAAATTGTTA+GGG 0.485966 7_3:-44016182 Msa1105500:CDS
CAATATCACCATATTCTCTC+TGG 0.489351 7_3:+44016371 None:intergenic
CTCGAAAATGGAGATGGTAT+TGG 0.491652 7_3:-44016295 Msa1105500:CDS
TTGGAACAAGATGGTGGTAG+TGG 0.494227 7_3:+44016213 None:intergenic
GATGGTATTGGTAGGTTACC+AGG 0.501983 7_3:-44016283 Msa1105500:CDS
GCAGGACAGGGCTGTTCTTG+AGG 0.502162 7_3:-44016656 Msa1105500:CDS
TGTGGATGGTCCATGCAGAT+AGG 0.502449 7_3:+44017048 None:intergenic
AATTCCACAAGGATCGAGAC+AGG 0.502538 7_3:-44016755 Msa1105500:CDS
GTAGGTTACCAGGTGGTGGT+AGG 0.505182 7_3:-44016273 Msa1105500:CDS
ATACCAGGAGCTGTGGTAGT+TGG 0.506423 7_3:-44016328 Msa1105500:CDS
TGGAATTGCGTAGGCATGCT+AGG 0.511583 7_3:-44016465 Msa1105500:CDS
TAGGTTACCAGGTGGTGGTA+GGG 0.512795 7_3:-44016272 Msa1105500:CDS
GACCGTCGTCGCTATCTTTG+GGG 0.514814 7_3:-44016109 Msa1105500:CDS
GCTATTCAGTCTGCCATACC+AGG 0.516031 7_3:-44016343 Msa1105500:CDS
TGTTGGTCTAAATGTCTACT+TGG 0.518204 7_3:+44016718 None:intergenic
CAAACTCGACTTTGAGTCCT+CGG 0.522532 7_3:+44016609 None:intergenic
GGTGGTAGGGAGGGGAGCAA+TGG 0.523498 7_3:-44016259 Msa1105500:CDS
CTAAAATGCCTTCATCATGT+TGG 0.523887 7_3:+44016701 None:intergenic
ACATCAGAGGGACGAGAAGT+AGG 0.527291 7_3:+44016433 None:intergenic
TATCATGAGAGCTGCAAAGT+AGG 0.528215 7_3:+44017013 None:intergenic
CAATCATGAATGATCTTCGT+TGG 0.532620 7_3:+44015967 None:intergenic
TTCTGAGAACTTGCAGGACA+GGG 0.533978 7_3:-44016668 Msa1105500:CDS
ATTGGTAGGTTACCAGGTGG+TGG 0.534392 7_3:-44016277 Msa1105500:CDS
TTACCAGGTGGTGGTAGGGA+GGG 0.536579 7_3:-44016268 Msa1105500:CDS
CTCCCCTCCCTACCACCACC+TGG 0.537599 7_3:+44016265 None:intergenic
ATCCATCATTTGGAACAAGA+TGG 0.540246 7_3:+44016204 None:intergenic
AACTACCACAGCTCCTGGTA+TGG 0.541534 7_3:+44016330 None:intergenic
TCCCCAACTACCACAGCTCC+TGG 0.541696 7_3:+44016325 None:intergenic
ACCAGGAGCTGTGGTAGTTG+GGG 0.553461 7_3:-44016326 Msa1105500:CDS
CACGGTGCGAGGAAGATGGC+TGG 0.561637 7_3:-44017141 None:intergenic
AGGCTGGGAGGTTGTTGAAG+AGG 0.565561 7_3:-44016557 Msa1105500:CDS
CATTTAGACCAACATGATGA+AGG 0.566826 7_3:-44016709 Msa1105500:CDS
GAGCTCGTTCTTCAAATGGA+TGG 0.567465 7_3:-44016153 Msa1105500:CDS
AGTAGGAGAACAGCATTATG+TGG 0.571923 7_3:+44017030 None:intergenic
AGGGAGGGGAGCAATGGCAA+TGG 0.578428 7_3:-44016253 Msa1105500:CDS
TCACCCTGTCTCGATCCTTG+TGG 0.586932 7_3:+44016751 None:intergenic
GTCTGCCATACCAGGAGCTG+TGG 0.587043 7_3:-44016335 Msa1105500:CDS
TTGCATTGTCCTCTATGTAG+GGG 0.587725 7_3:-44016589 Msa1105500:CDS
ATAAGAAGAGAAGTTGCTCA+AGG 0.588030 7_3:-44016516 Msa1105500:CDS
GGAGAACAGCATTATGTGGA+TGG 0.588463 7_3:+44017034 None:intergenic
TACGTTCTCGAAAATGGAGA+TGG 0.597289 7_3:-44016301 Msa1105500:CDS
AATACTGTGCCCCTACATAG+AGG 0.600766 7_3:+44016580 None:intergenic
GAGATTATCTGGAATTGCGT+AGG 0.608619 7_3:-44016474 Msa1105500:CDS
ATGGCAATGGTAATGTACCT+TGG 0.614535 7_3:-44016240 Msa1105500:CDS
AGTTTCATGTCCTATCTGCA+TGG 0.615030 7_3:-44017058 Msa1105500:CDS
TAAGAAGAGAAGTTGCTCAA+GGG 0.617758 7_3:-44016515 Msa1105500:CDS
GTTCTTCAAATGGATGGTCA+AGG 0.631888 7_3:-44016147 Msa1105500:CDS
TAGGGGCACAGTATTAGGCT+GGG 0.632550 7_3:-44016572 Msa1105500:CDS
AAAATGGAGATGGTATTGGT+AGG 0.633136 7_3:-44016291 Msa1105500:CDS
GGACAGGGCTGTTCTTGAGG+AGG 0.634510 7_3:-44016653 Msa1105500:CDS
AAAATTGAGAGACAACTCTA+CGG 0.637192 7_3:-44016926 Msa1105500:CDS
AAGATGCATCTCATGTCCCA+AGG 0.639920 7_3:-44016018 Msa1105500:CDS
TCTTGTCGGATCAACATCAG+AGG 0.652568 7_3:+44016420 None:intergenic
CATCATTTGGAACAAGATGG+TGG 0.659005 7_3:+44016207 None:intergenic
ACCTCGTCCTATTCAAACGA+CGG 0.662069 7_3:+44015990 None:intergenic
TTGTCTGTTGGAATTCCACA+AGG 0.662938 7_3:-44016766 Msa1105500:CDS
ATTCCACAAGGATCGAGACA+GGG 0.664648 7_3:-44016754 Msa1105500:CDS
CTTGTCGGATCAACATCAGA+GGG 0.668547 7_3:+44016421 None:intergenic
CACCCCAAAGATAGCGACGA+CGG 0.669001 7_3:+44016107 None:intergenic
ATCCGACAAGAGAACAAGCG+TGG 0.676885 7_3:-44016408 Msa1105500:CDS
AGATGTAGATAATTCATCCG+AGG 0.680649 7_3:-44016626 Msa1105500:CDS
GCCGTCGTTTGAATAGGACG+AGG 0.693738 7_3:-44015991 Msa1105500:CDS
ATGCATCTCATGTCCCAAGG+AGG 0.718218 7_3:-44016015 Msa1105500:CDS
GGGCACAGTATTAGGCTGGG+AGG 0.723334 7_3:-44016569 Msa1105500:CDS
ATGGTGGTAGTGGTTAACCA+AGG 0.736997 7_3:+44016223 None:intergenic
GGTATTGGTAGGTTACCAGG+TGG 0.762448 7_3:-44016280 Msa1105500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGAACTTTGTAAATTT+GGG + chr7_3:44016200-44016219 None:intergenic 15.0%
!! ATTAAAGAACTTTGTAAATT+TGG + chr7_3:44016201-44016220 None:intergenic 15.0%
!!! ATAGAGTATTAATTTCATTT+TGG + chr7_3:44016311-44016330 None:intergenic 15.0%
!! TTAAAGAACTTTGTAAATTT+GGG + chr7_3:44016200-44016219 None:intergenic 15.0%
!! ATTAAAGAACTTTGTAAATT+TGG + chr7_3:44016201-44016220 None:intergenic 15.0%
!!! ATAGAGTATTAATTTCATTT+TGG + chr7_3:44016311-44016330 None:intergenic 15.0%
!!! TGTCTCTCAATTTTTTAAAT+CGG + chr7_3:44016164-44016183 None:intergenic 20.0%
!! GTTAATATCAAAACTATTAC+CGG + chr7_3:44016241-44016260 None:intergenic 20.0%
!!! TGTCTCTCAATTTTTTAAAT+CGG + chr7_3:44016164-44016183 None:intergenic 20.0%
!! GTTAATATCAAAACTATTAC+CGG + chr7_3:44016241-44016260 None:intergenic 20.0%
! ACATTTGTGATACAAGTTAT+AGG - chr7_3:44016121-44016140 Msa1105500:CDS 25.0%
! ATTAATACTCTATTGTCTGT+TGG - chr7_3:44016318-44016337 Msa1105500:CDS 25.0%
! ATAACACCATTGAAATTGTT+AGG - chr7_3:44016913-44016932 Msa1105500:CDS 25.0%
! TAACACCATTGAAATTGTTA+GGG - chr7_3:44016914-44016933 Msa1105500:CDS 25.0%
! TCTACGAATATTTAATGAAC+TGG - chr7_3:44017052-44017071 Msa1105500:CDS 25.0%
! ACATTTGTGATACAAGTTAT+AGG - chr7_3:44016121-44016140 Msa1105500:CDS 25.0%
! ATTAATACTCTATTGTCTGT+TGG - chr7_3:44016318-44016337 Msa1105500:CDS 25.0%
! ATAACACCATTGAAATTGTT+AGG - chr7_3:44016913-44016932 Msa1105500:CDS 25.0%
! TAACACCATTGAAATTGTTA+GGG - chr7_3:44016914-44016933 Msa1105500:CDS 25.0%
! TCTACGAATATTTAATGAAC+TGG - chr7_3:44017052-44017071 Msa1105500:CDS 25.0%
TTATAGGCATTCAAATTGTC+TGG - chr7_3:44016137-44016156 Msa1105500:CDS 30.0%
AAAATTGAGAGACAACTCTA+CGG - chr7_3:44016170-44016189 Msa1105500:CDS 30.0%
ATAAACACTAACAACTCTTC+CGG - chr7_3:44016219-44016238 Msa1105500:CDS 30.0%
TAAATGTCTACTTGGATCTT+GGG + chr7_3:44016373-44016392 None:intergenic 30.0%
TTATAGGCATTCAAATTGTC+TGG - chr7_3:44016137-44016156 Msa1105500:CDS 30.0%
AAAATTGAGAGACAACTCTA+CGG - chr7_3:44016170-44016189 Msa1105500:CDS 30.0%
ATAAACACTAACAACTCTTC+CGG - chr7_3:44016219-44016238 Msa1105500:CDS 30.0%
TAAATGTCTACTTGGATCTT+GGG + chr7_3:44016373-44016392 None:intergenic 30.0%
CTAAATGTCTACTTGGATCT+TGG + chr7_3:44016374-44016393 None:intergenic 35.0%
! TGTTGGTCTAAATGTCTACT+TGG + chr7_3:44016381-44016400 None:intergenic 35.0%
CATTTAGACCAACATGATGA+AGG - chr7_3:44016387-44016406 Msa1105500:CDS 35.0%
CTAAAATGCCTTCATCATGT+TGG + chr7_3:44016398-44016417 None:intergenic 35.0%
AGATGTAGATAATTCATCCG+AGG - chr7_3:44016470-44016489 Msa1105500:CDS 35.0%
TTTGCATTGTCCTCTATGTA+GGG - chr7_3:44016506-44016525 Msa1105500:CDS 35.0%
ATAAGAAGAGAAGTTGCTCA+AGG - chr7_3:44016580-44016599 Msa1105500:CDS 35.0%
TAAGAAGAGAAGTTGCTCAA+GGG - chr7_3:44016581-44016600 Msa1105500:CDS 35.0%
CAATATCACCATATTCTCTC+TGG + chr7_3:44016728-44016747 None:intergenic 35.0%
!! AAAATGGAGATGGTATTGGT+AGG - chr7_3:44016805-44016824 Msa1105500:CDS 35.0%
! ATCCATCATTTGGAACAAGA+TGG + chr7_3:44016895-44016914 None:intergenic 35.0%
!! CAATGGTGTTATCCATCATT+TGG + chr7_3:44016905-44016924 None:intergenic 35.0%
TGGTTCCCTAACAATTTCAA+TGG + chr7_3:44016922-44016941 None:intergenic 35.0%
CTAAATGTCTACTTGGATCT+TGG + chr7_3:44016374-44016393 None:intergenic 35.0%
! TGTTGGTCTAAATGTCTACT+TGG + chr7_3:44016381-44016400 None:intergenic 35.0%
CATTTAGACCAACATGATGA+AGG - chr7_3:44016387-44016406 Msa1105500:CDS 35.0%
CTAAAATGCCTTCATCATGT+TGG + chr7_3:44016398-44016417 None:intergenic 35.0%
AGATGTAGATAATTCATCCG+AGG - chr7_3:44016470-44016489 Msa1105500:CDS 35.0%
TTTGCATTGTCCTCTATGTA+GGG - chr7_3:44016506-44016525 Msa1105500:CDS 35.0%
ATAAGAAGAGAAGTTGCTCA+AGG - chr7_3:44016580-44016599 Msa1105500:CDS 35.0%
TAAGAAGAGAAGTTGCTCAA+GGG - chr7_3:44016581-44016600 Msa1105500:CDS 35.0%
CAATATCACCATATTCTCTC+TGG + chr7_3:44016728-44016747 None:intergenic 35.0%
!! AAAATGGAGATGGTATTGGT+AGG - chr7_3:44016805-44016824 Msa1105500:CDS 35.0%
! ATCCATCATTTGGAACAAGA+TGG + chr7_3:44016895-44016914 None:intergenic 35.0%
!! CAATGGTGTTATCCATCATT+TGG + chr7_3:44016905-44016924 None:intergenic 35.0%
TGGTTCCCTAACAATTTCAA+TGG + chr7_3:44016922-44016941 None:intergenic 35.0%
AGTTTCATGTCCTATCTGCA+TGG - chr7_3:44016038-44016057 Msa1105500:CDS 40.0%
AGTAGGAGAACAGCATTATG+TGG + chr7_3:44016069-44016088 None:intergenic 40.0%
TATCATGAGAGCTGCAAAGT+AGG + chr7_3:44016086-44016105 None:intergenic 40.0%
ACTTTGCAGCTCTCATGATA+AGG - chr7_3:44016086-44016105 Msa1105500:CDS 40.0%
CTTTGCAGCTCTCATGATAA+GGG - chr7_3:44016087-44016106 Msa1105500:CDS 40.0%
TTGTCTGTTGGAATTCCACA+AGG - chr7_3:44016330-44016349 Msa1105500:CDS 40.0%
GTTTGCATTGTCCTCTATGT+AGG - chr7_3:44016505-44016524 Msa1105500:CDS 40.0%
TTGCATTGTCCTCTATGTAG+GGG - chr7_3:44016507-44016526 Msa1105500:CDS 40.0%
! CTCATTTGCTGGAGATTATC+TGG - chr7_3:44016611-44016630 Msa1105500:CDS 40.0%
! GAGATTATCTGGAATTGCGT+AGG - chr7_3:44016622-44016641 Msa1105500:CDS 40.0%
TACGTTCTCGAAAATGGAGA+TGG - chr7_3:44016795-44016814 Msa1105500:CDS 40.0%
CTCGAAAATGGAGATGGTAT+TGG - chr7_3:44016801-44016820 Msa1105500:CDS 40.0%
! ATGGCAATGGTAATGTACCT+TGG - chr7_3:44016856-44016875 Msa1105500:CDS 40.0%
! CATCATTTGGAACAAGATGG+TGG + chr7_3:44016892-44016911 None:intergenic 40.0%
CACCATCTTGTTCCAAATGA+TGG - chr7_3:44016890-44016909 Msa1105500:CDS 40.0%
GTTCTTCAAATGGATGGTCA+AGG - chr7_3:44016949-44016968 Msa1105500:CDS 40.0%
!! TCTTTGGGGTGAGAATTTGT+TGG - chr7_3:44017001-44017020 Msa1105500:CDS 40.0%
!! CTTTGGGGTGAGAATTTGTT+GGG - chr7_3:44017002-44017021 Msa1105500:CDS 40.0%
AGTTTCATGTCCTATCTGCA+TGG - chr7_3:44016038-44016057 Msa1105500:CDS 40.0%
AGTAGGAGAACAGCATTATG+TGG + chr7_3:44016069-44016088 None:intergenic 40.0%
TATCATGAGAGCTGCAAAGT+AGG + chr7_3:44016086-44016105 None:intergenic 40.0%
ACTTTGCAGCTCTCATGATA+AGG - chr7_3:44016086-44016105 Msa1105500:CDS 40.0%
CTTTGCAGCTCTCATGATAA+GGG - chr7_3:44016087-44016106 Msa1105500:CDS 40.0%
TTGTCTGTTGGAATTCCACA+AGG - chr7_3:44016330-44016349 Msa1105500:CDS 40.0%
GTTTGCATTGTCCTCTATGT+AGG - chr7_3:44016505-44016524 Msa1105500:CDS 40.0%
TTGCATTGTCCTCTATGTAG+GGG - chr7_3:44016507-44016526 Msa1105500:CDS 40.0%
! CTCATTTGCTGGAGATTATC+TGG - chr7_3:44016611-44016630 Msa1105500:CDS 40.0%
! GAGATTATCTGGAATTGCGT+AGG - chr7_3:44016622-44016641 Msa1105500:CDS 40.0%
TACGTTCTCGAAAATGGAGA+TGG - chr7_3:44016795-44016814 Msa1105500:CDS 40.0%
CTCGAAAATGGAGATGGTAT+TGG - chr7_3:44016801-44016820 Msa1105500:CDS 40.0%
! ATGGCAATGGTAATGTACCT+TGG - chr7_3:44016856-44016875 Msa1105500:CDS 40.0%
! CATCATTTGGAACAAGATGG+TGG + chr7_3:44016892-44016911 None:intergenic 40.0%
CACCATCTTGTTCCAAATGA+TGG - chr7_3:44016890-44016909 Msa1105500:CDS 40.0%
GTTCTTCAAATGGATGGTCA+AGG - chr7_3:44016949-44016968 Msa1105500:CDS 40.0%
!! TCTTTGGGGTGAGAATTTGT+TGG - chr7_3:44017001-44017020 Msa1105500:CDS 40.0%
!! CTTTGGGGTGAGAATTTGTT+GGG - chr7_3:44017002-44017021 Msa1105500:CDS 40.0%
GCATGCTCTTCACAGAGAAT+TGG - chr7_3:44016011-44016030 Msa1105500:CDS 45.0%
GGAGAACAGCATTATGTGGA+TGG + chr7_3:44016065-44016084 None:intergenic 45.0%
AATTCCACAAGGATCGAGAC+AGG - chr7_3:44016341-44016360 Msa1105500:CDS 45.0%
ATTCCACAAGGATCGAGACA+GGG - chr7_3:44016342-44016361 Msa1105500:CDS 45.0%
!! TGCTGATTCTGAGAACTTGC+AGG - chr7_3:44016422-44016441 Msa1105500:CDS 45.0%
! ATTCTGAGAACTTGCAGGAC+AGG - chr7_3:44016427-44016446 Msa1105500:CDS 45.0%
! TTCTGAGAACTTGCAGGACA+GGG - chr7_3:44016428-44016447 Msa1105500:CDS 45.0%
CAAACTCGACTTTGAGTCCT+CGG + chr7_3:44016490-44016509 None:intergenic 45.0%
AATACTGTGCCCCTACATAG+AGG + chr7_3:44016519-44016538 None:intergenic 45.0%
! CTATGTAGGGGCACAGTATT+AGG - chr7_3:44016519-44016538 Msa1105500:CDS 45.0%
AGGGATTCATGCTCATTTGC+TGG - chr7_3:44016600-44016619 Msa1105500:CDS 45.0%
CTTGTCGGATCAACATCAGA+GGG + chr7_3:44016678-44016697 None:intergenic 45.0%
TCTTGTCGGATCAACATCAG+AGG + chr7_3:44016679-44016698 None:intergenic 45.0%
TTTGAGCGCCAGAGAGAATA+TGG - chr7_3:44016717-44016736 Msa1105500:CDS 45.0%
GGGGATTACGTTCTCGAAAA+TGG - chr7_3:44016789-44016808 Msa1105500:CDS 45.0%
!! GATGGTATTGGTAGGTTACC+AGG - chr7_3:44016813-44016832 Msa1105500:CDS 45.0%
!! ATGGTGGTAGTGGTTAACCA+AGG + chr7_3:44016876-44016895 None:intergenic 45.0%
! TTGGAACAAGATGGTGGTAG+TGG + chr7_3:44016886-44016905 None:intergenic 45.0%
CCATTTGAAGAACGAGCTCT+TGG + chr7_3:44016942-44016961 None:intergenic 45.0%
CCAAGAGCTCGTTCTTCAAA+TGG - chr7_3:44016939-44016958 Msa1105500:CDS 45.0%
GAGCTCGTTCTTCAAATGGA+TGG - chr7_3:44016943-44016962 Msa1105500:CDS 45.0%
AAGATGCATCTCATGTCCCA+AGG - chr7_3:44017078-44017097 Msa1105500:CDS 45.0%
ACCTCGTCCTATTCAAACGA+CGG + chr7_3:44017109-44017128 None:intergenic 45.0%
GCATGCTCTTCACAGAGAAT+TGG - chr7_3:44016011-44016030 Msa1105500:CDS 45.0%
GGAGAACAGCATTATGTGGA+TGG + chr7_3:44016065-44016084 None:intergenic 45.0%
AATTCCACAAGGATCGAGAC+AGG - chr7_3:44016341-44016360 Msa1105500:CDS 45.0%
ATTCCACAAGGATCGAGACA+GGG - chr7_3:44016342-44016361 Msa1105500:CDS 45.0%
!! TGCTGATTCTGAGAACTTGC+AGG - chr7_3:44016422-44016441 Msa1105500:CDS 45.0%
! ATTCTGAGAACTTGCAGGAC+AGG - chr7_3:44016427-44016446 Msa1105500:CDS 45.0%
! TTCTGAGAACTTGCAGGACA+GGG - chr7_3:44016428-44016447 Msa1105500:CDS 45.0%
CAAACTCGACTTTGAGTCCT+CGG + chr7_3:44016490-44016509 None:intergenic 45.0%
AATACTGTGCCCCTACATAG+AGG + chr7_3:44016519-44016538 None:intergenic 45.0%
! CTATGTAGGGGCACAGTATT+AGG - chr7_3:44016519-44016538 Msa1105500:CDS 45.0%
AGGGATTCATGCTCATTTGC+TGG - chr7_3:44016600-44016619 Msa1105500:CDS 45.0%
CTTGTCGGATCAACATCAGA+GGG + chr7_3:44016678-44016697 None:intergenic 45.0%
TCTTGTCGGATCAACATCAG+AGG + chr7_3:44016679-44016698 None:intergenic 45.0%
TTTGAGCGCCAGAGAGAATA+TGG - chr7_3:44016717-44016736 Msa1105500:CDS 45.0%
GGGGATTACGTTCTCGAAAA+TGG - chr7_3:44016789-44016808 Msa1105500:CDS 45.0%
!! GATGGTATTGGTAGGTTACC+AGG - chr7_3:44016813-44016832 Msa1105500:CDS 45.0%
!! ATGGTGGTAGTGGTTAACCA+AGG + chr7_3:44016876-44016895 None:intergenic 45.0%
! TTGGAACAAGATGGTGGTAG+TGG + chr7_3:44016886-44016905 None:intergenic 45.0%
CCATTTGAAGAACGAGCTCT+TGG + chr7_3:44016942-44016961 None:intergenic 45.0%
CCAAGAGCTCGTTCTTCAAA+TGG - chr7_3:44016939-44016958 Msa1105500:CDS 45.0%
GAGCTCGTTCTTCAAATGGA+TGG - chr7_3:44016943-44016962 Msa1105500:CDS 45.0%
AAGATGCATCTCATGTCCCA+AGG - chr7_3:44017078-44017097 Msa1105500:CDS 45.0%
ACCTCGTCCTATTCAAACGA+CGG + chr7_3:44017109-44017128 None:intergenic 45.0%
TGTGGATGGTCCATGCAGAT+AGG + chr7_3:44016051-44016070 None:intergenic 50.0%
! TAGGGGCACAGTATTAGGCT+GGG - chr7_3:44016524-44016543 Msa1105500:CDS 50.0%
TGGAATTGCGTAGGCATGCT+AGG - chr7_3:44016631-44016650 Msa1105500:CDS 50.0%
ACATCAGAGGGACGAGAAGT+AGG + chr7_3:44016666-44016685 None:intergenic 50.0%
ATCCGACAAGAGAACAAGCG+TGG - chr7_3:44016688-44016707 Msa1105500:CDS 50.0%
TGCCACGCTTGTTCTCTTGT+CGG + chr7_3:44016693-44016712 None:intergenic 50.0%
GCTATTCAGTCTGCCATACC+AGG - chr7_3:44016753-44016772 Msa1105500:CDS 50.0%
AACTACCACAGCTCCTGGTA+TGG + chr7_3:44016769-44016788 None:intergenic 50.0%
ATACCAGGAGCTGTGGTAGT+TGG - chr7_3:44016768-44016787 Msa1105500:CDS 50.0%
TACCAGGAGCTGTGGTAGTT+GGG - chr7_3:44016769-44016788 Msa1105500:CDS 50.0%
!! GGTATTGGTAGGTTACCAGG+TGG - chr7_3:44016816-44016835 Msa1105500:CDS 50.0%
ATTGGTAGGTTACCAGGTGG+TGG - chr7_3:44016819-44016838 Msa1105500:CDS 50.0%
! TAGGTTACCAGGTGGTGGTA+GGG - chr7_3:44016824-44016843 Msa1105500:CDS 50.0%
TGACCGTCGTCGCTATCTTT+GGG - chr7_3:44016986-44017005 Msa1105500:CDS 50.0%
ATGCATCTCATGTCCCAAGG+AGG - chr7_3:44017081-44017100 Msa1105500:CDS 50.0%
TGTGGATGGTCCATGCAGAT+AGG + chr7_3:44016051-44016070 None:intergenic 50.0%
! TAGGGGCACAGTATTAGGCT+GGG - chr7_3:44016524-44016543 Msa1105500:CDS 50.0%
TGGAATTGCGTAGGCATGCT+AGG - chr7_3:44016631-44016650 Msa1105500:CDS 50.0%
ACATCAGAGGGACGAGAAGT+AGG + chr7_3:44016666-44016685 None:intergenic 50.0%
ATCCGACAAGAGAACAAGCG+TGG - chr7_3:44016688-44016707 Msa1105500:CDS 50.0%
TGCCACGCTTGTTCTCTTGT+CGG + chr7_3:44016693-44016712 None:intergenic 50.0%
GCTATTCAGTCTGCCATACC+AGG - chr7_3:44016753-44016772 Msa1105500:CDS 50.0%
AACTACCACAGCTCCTGGTA+TGG + chr7_3:44016769-44016788 None:intergenic 50.0%
ATACCAGGAGCTGTGGTAGT+TGG - chr7_3:44016768-44016787 Msa1105500:CDS 50.0%
TACCAGGAGCTGTGGTAGTT+GGG - chr7_3:44016769-44016788 Msa1105500:CDS 50.0%
!! GGTATTGGTAGGTTACCAGG+TGG - chr7_3:44016816-44016835 Msa1105500:CDS 50.0%
ATTGGTAGGTTACCAGGTGG+TGG - chr7_3:44016819-44016838 Msa1105500:CDS 50.0%
! TAGGTTACCAGGTGGTGGTA+GGG - chr7_3:44016824-44016843 Msa1105500:CDS 50.0%
TGACCGTCGTCGCTATCTTT+GGG - chr7_3:44016986-44017005 Msa1105500:CDS 50.0%
ATGCATCTCATGTCCCAAGG+AGG - chr7_3:44017081-44017100 Msa1105500:CDS 50.0%
TCACCCTGTCTCGATCCTTG+TGG + chr7_3:44016348-44016367 None:intergenic 55.0%
! GTAGGGGCACAGTATTAGGC+TGG - chr7_3:44016523-44016542 Msa1105500:CDS 55.0%
AGGCTGGGAGGTTGTTGAAG+AGG - chr7_3:44016539-44016558 Msa1105500:CDS 55.0%
ACCAGGAGCTGTGGTAGTTG+GGG - chr7_3:44016770-44016789 Msa1105500:CDS 55.0%
! GTAGGTTACCAGGTGGTGGT+AGG - chr7_3:44016823-44016842 Msa1105500:CDS 55.0%
! TTACCAGGTGGTGGTAGGGA+GGG - chr7_3:44016828-44016847 Msa1105500:CDS 55.0%
CTGACCGTCGTCGCTATCTT+TGG - chr7_3:44016985-44017004 Msa1105500:CDS 55.0%
GACCGTCGTCGCTATCTTTG+GGG - chr7_3:44016987-44017006 Msa1105500:CDS 55.0%
CACCCCAAAGATAGCGACGA+CGG + chr7_3:44016992-44017011 None:intergenic 55.0%
GCCGTCGTTTGAATAGGACG+AGG - chr7_3:44017105-44017124 Msa1105500:CDS 55.0%
TCACCCTGTCTCGATCCTTG+TGG + chr7_3:44016348-44016367 None:intergenic 55.0%
! GTAGGGGCACAGTATTAGGC+TGG - chr7_3:44016523-44016542 Msa1105500:CDS 55.0%
AGGCTGGGAGGTTGTTGAAG+AGG - chr7_3:44016539-44016558 Msa1105500:CDS 55.0%
ACCAGGAGCTGTGGTAGTTG+GGG - chr7_3:44016770-44016789 Msa1105500:CDS 55.0%
! GTAGGTTACCAGGTGGTGGT+AGG - chr7_3:44016823-44016842 Msa1105500:CDS 55.0%
! TTACCAGGTGGTGGTAGGGA+GGG - chr7_3:44016828-44016847 Msa1105500:CDS 55.0%
CTGACCGTCGTCGCTATCTT+TGG - chr7_3:44016985-44017004 Msa1105500:CDS 55.0%
GACCGTCGTCGCTATCTTTG+GGG - chr7_3:44016987-44017006 Msa1105500:CDS 55.0%
CACCCCAAAGATAGCGACGA+CGG + chr7_3:44016992-44017011 None:intergenic 55.0%
GCCGTCGTTTGAATAGGACG+AGG - chr7_3:44017105-44017124 Msa1105500:CDS 55.0%
GCAGGACAGGGCTGTTCTTG+AGG - chr7_3:44016440-44016459 Msa1105500:CDS 60.0%
GGACAGGGCTGTTCTTGAGG+AGG - chr7_3:44016443-44016462 Msa1105500:CDS 60.0%
GGGCACAGTATTAGGCTGGG+AGG - chr7_3:44016527-44016546 Msa1105500:CDS 60.0%
GTCTGCCATACCAGGAGCTG+TGG - chr7_3:44016761-44016780 Msa1105500:CDS 60.0%
TCCCCAACTACCACAGCTCC+TGG + chr7_3:44016774-44016793 None:intergenic 60.0%
! GTTACCAGGTGGTGGTAGGG+AGG - chr7_3:44016827-44016846 Msa1105500:CDS 60.0%
! TACCAGGTGGTGGTAGGGAG+GGG - chr7_3:44016829-44016848 Msa1105500:CDS 60.0%
AGGGAGGGGAGCAATGGCAA+TGG - chr7_3:44016843-44016862 Msa1105500:CDS 60.0%
TCAAACGACGGCGCCTCCTT+GGG + chr7_3:44017097-44017116 None:intergenic 60.0%
TTCAAACGACGGCGCCTCCT+TGG + chr7_3:44017098-44017117 None:intergenic 60.0%
!! GGAGGCGCCGTCGTTTGAAT+AGG - chr7_3:44017099-44017118 Msa1105500:CDS 60.0%
GCAGGACAGGGCTGTTCTTG+AGG - chr7_3:44016440-44016459 Msa1105500:CDS 60.0%
GGACAGGGCTGTTCTTGAGG+AGG - chr7_3:44016443-44016462 Msa1105500:CDS 60.0%
GGGCACAGTATTAGGCTGGG+AGG - chr7_3:44016527-44016546 Msa1105500:CDS 60.0%
GTCTGCCATACCAGGAGCTG+TGG - chr7_3:44016761-44016780 Msa1105500:CDS 60.0%
TCCCCAACTACCACAGCTCC+TGG + chr7_3:44016774-44016793 None:intergenic 60.0%
! GTTACCAGGTGGTGGTAGGG+AGG - chr7_3:44016827-44016846 Msa1105500:CDS 60.0%
! TACCAGGTGGTGGTAGGGAG+GGG - chr7_3:44016829-44016848 Msa1105500:CDS 60.0%
AGGGAGGGGAGCAATGGCAA+TGG - chr7_3:44016843-44016862 Msa1105500:CDS 60.0%
TCAAACGACGGCGCCTCCTT+GGG + chr7_3:44017097-44017116 None:intergenic 60.0%
TTCAAACGACGGCGCCTCCT+TGG + chr7_3:44017098-44017117 None:intergenic 60.0%
!! GGAGGCGCCGTCGTTTGAAT+AGG - chr7_3:44017099-44017118 Msa1105500:CDS 60.0%
GGTGGTAGGGAGGGGAGCAA+TGG - chr7_3:44016837-44016856 Msa1105500:CDS 65.0%
GGTGGTAGGGAGGGGAGCAA+TGG - chr7_3:44016837-44016856 Msa1105500:CDS 65.0%
CTCCCCTCCCTACCACCACC+TGG + chr7_3:44016834-44016853 None:intergenic 70.0%
CTCCCCTCCCTACCACCACC+TGG + chr7_3:44016834-44016853 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 44015970 44017148 44015970 ID=Msa1105500;Name=Msa1105500
chr7_3 mRNA 44015970 44017148 44015970 ID=Msa1105500-mRNA-1;Parent=Msa1105500;Name=Msa1105500-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|392
chr7_3 exon 44015970 44017148 44015970 ID=Msa1105500-mRNA-1:exon:9096;Parent=Msa1105500-mRNA-1
chr7_3 CDS 44015970 44017148 44015970 ID=Msa1105500-mRNA-1:cds;Parent=Msa1105500-mRNA-1
Gene Sequence

>Msa1105500

ATGGCTGGTTTTAAGCGAAGATTATGTAATGATTCAGATATGCATGCTCTTCACAGAGAATTGGATGAAGTTTCATGTCCTATCTGCATGGACCATCCACATAATGCTGTTCTCCTACTTTGCAGCTCTCATGATAAGGGCTGCAGATCTTACATTTGTGATACAAGTTATAGGCATTCAAATTGTCTGGACCGATTTAAAAAATTGAGAGACAACTCTACGGAGAACCCAAATTTACAAAGTTCTTTAATAAACACTAACAACTCTTCCGGTAATAGTTTTGATATTAACTTTACTATGCAATCTGACATGCATAATGTTGATGAATTATTACTCTACCAAAATGAAATTAATACTCTATTGTCTGTTGGAATTCCACAAGGATCGAGACAGGGTGATGCCCAAGATCCAAGTAGACATTTAGACCAACATGATGAAGGCATTTTAGAAACTGCTGATTCTGAGAACTTGCAGGACAGGGCTGTTCTTGAGGAGGAATTAGATGTAGATAATTCATCCGAGGACTCAAAGTCGAGTTTGCATTGTCCTCTATGTAGGGGCACAGTATTAGGCTGGGAGGTTGTTGAAGAGGCTAGAAATTATCTGAATAATAAGAAGAGAAGTTGCTCAAGGGATTCATGCTCATTTGCTGGAGATTATCTGGAATTGCGTAGGCATGCTAGGAGAGTTCATCCTACTTCTCGTCCCTCTGATGTTGATCCGACAAGAGAACAAGCGTGGCAACAATTTGAGCGCCAGAGAGAATATGGTGATATTGTGAGTGCTATTCAGTCTGCCATACCAGGAGCTGTGGTAGTTGGGGATTACGTTCTCGAAAATGGAGATGGTATTGGTAGGTTACCAGGTGGTGGTAGGGAGGGGAGCAATGGCAATGGTAATGTACCTTGGTTAACCACTACCACCATCTTGTTCCAAATGATGGATAACACCATTGAAATTGTTAGGGAACCAAGAGCTCGTTCTTCAAATGGATGGTCAAGGCATCGTCGTTCATCTGACCGTCGTCGCTATCTTTGGGGTGAGAATTTGTTGGGTCTTCAAGATAATGAAGTCGAAGAAGATCTACGAATATTTAATGAACTGGTTGAAGATGCATCTCATGTCCCAAGGAGGCGCCGTCGTTTGAATAGGACGAGGTCCAACGAAGATCATTCATGA

Protein sequence

>Msa1105500

MAGFKRRLCNDSDMHALHRELDEVSCPICMDHPHNAVLLLCSSHDKGCRSYICDTSYRHSNCLDRFKKLRDNSTENPNLQSSLINTNNSSGNSFDINFTMQSDMHNVDELLLYQNEINTLLSVGIPQGSRQGDAQDPSRHLDQHDEGILETADSENLQDRAVLEEELDVDNSSEDSKSSLHCPLCRGTVLGWEVVEEARNYLNNKKRSCSRDSCSFAGDYLELRRHARRVHPTSRPSDVDPTREQAWQQFERQREYGDIVSAIQSAIPGAVVVGDYVLENGDGIGRLPGGGREGSNGNGNVPWLTTTTILFQMMDNTIEIVREPRARSSNGWSRHRRSSDRRRYLWGENLLGLQDNEVEEDLRIFNELVEDASHVPRRRRRLNRTRSNEDHS*