AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1196980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196980 MtrunA17_Chr5g0413571 72.593 135 37 0 27 161 1 135 2.16e-69 206
Msa1196980 MtrunA17_Chr2g0282661 68.841 138 37 2 31 162 14 151 2.59e-65 196
Msa1196980 MtrunA17_Chr8g0365411 75.000 136 1 1 27 162 1 103 3.91e-64 191
Msa1196980 MtrunA17_Chr2g0324821 69.697 132 36 1 35 162 8 139 3.99e-62 187
Msa1196980 MtrunA17_Chr6g0476691 86.000 100 13 1 63 162 1 99 3.25e-56 171
Msa1196980 MtrunA17_Chr5g0438061 51.200 125 52 2 37 160 103 219 5.22e-32 114
Msa1196980 MtrunA17_Chr5g0438041 49.612 129 52 4 37 160 5 125 5.68e-28 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196980 AT1G23750.1 78.102 137 29 1 27 162 1 137 5.68e-79 231
Msa1196980 AT1G10590.2 77.372 137 28 2 27 160 1 137 2.07e-74 219
Msa1196980 AT1G10590.1 77.372 137 28 2 27 160 1 137 2.07e-74 219
Msa1196980 AT1G10590.3 77.372 137 28 2 27 160 15 151 2.42e-74 219
Msa1196980 AT2G33845.1 72.868 129 34 1 35 162 53 181 4.83e-63 192
Msa1196980 AT1G23750.2 81.000 100 19 0 63 162 1 100 1.16e-58 178
Msa1196980 AT4G28440.1 65.909 132 39 3 35 160 18 149 4.64e-58 178
Msa1196980 AT1G03810.1 61.417 127 46 2 35 158 15 141 5.10e-51 160

Find 68 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTTAGTTGGTTATAATT+AGG 0.171736 8_1:+47086716 None:intergenic
TTCACTTCCAGTTTCATTTC+AGG 0.179415 8_1:-47091910 Msa1196980:intron
TCTAACATTATTATTAATTA+TGG 0.199924 8_1:+47086638 None:intergenic
CAACTTCTACTGTGTTATAA+TGG 0.207399 8_1:-47087025 Msa1196980:three_prime_UTR
TAACAAGTTCATATTCAATA+AGG 0.264256 8_1:+47087079 None:intergenic
GTTATAATTAGGAGTATTAA+AGG 0.270646 8_1:+47086727 None:intergenic
ATCAACTAGGAAAAGAGATT+TGG 0.329944 8_1:-47086987 Msa1196980:three_prime_UTR
CAACTGGAAGAAATAATTCT+TGG 0.335285 8_1:+47086953 None:intergenic
AACTTCTACTGTGTTATAAT+GGG 0.350186 8_1:-47087024 Msa1196980:three_prime_UTR
TAAATGAAAGATAAGGGAAT+TGG 0.356242 8_1:-47086883 Msa1196980:three_prime_UTR
AGTTTGGTTGGGGATGAGAC+TGG 0.358059 8_1:-47091419 Msa1196980:CDS
GAGGATTACATGAAGTATAA+AGG 0.379648 8_1:+47086756 None:intergenic
AATCTGACCTGAAATGAAAC+TGG 0.387919 8_1:+47091903 None:intergenic
TTGCTTTAAATGAAAGATAA+GGG 0.392170 8_1:-47086889 Msa1196980:three_prime_UTR
CAAGAAAATTACGCTTTAGT+TGG 0.400540 8_1:+47086705 None:intergenic
GATGCGAATTGCTGAGAGTT+TGG 0.401501 8_1:-47091435 Msa1196980:CDS
AACAAGTTCATATTCAATAA+GGG 0.410549 8_1:+47087080 None:intergenic
CACTAGTCCCCGGTCGAAGC+TGG 0.415538 8_1:+47091537 None:intergenic
GGTAGGAAACTAGGAATCAT+TGG 0.432403 8_1:+47086611 None:intergenic
GACCTTTAGATCTCATGTAC+TGG 0.445559 8_1:-47086803 Msa1196980:three_prime_UTR
ATTAGAACCACTGATTCAAC+TGG 0.449927 8_1:+47086937 None:intergenic
ATTATGGCGGAGGCAAAACC+TGG 0.453548 8_1:-47091590 Msa1196980:CDS
TGAGGCTTGCTGTGGACAAA+TGG 0.453565 8_1:-47087161 Msa1196980:CDS
CGAATTGCTGAGAGTTTGGT+TGG 0.459494 8_1:-47091431 Msa1196980:CDS
ATTGCTTTAAATGAAAGATA+AGG 0.462486 8_1:-47086890 Msa1196980:three_prime_UTR
GAGGCTTGCTGTGGACAAAT+GGG 0.484723 8_1:-47087160 Msa1196980:CDS
AATGTTGTGGAGTAACTTGT+TGG 0.490657 8_1:-47087057 Msa1196980:exon
GTTTGGTTGGGGATGAGACT+GGG 0.491245 8_1:-47091418 Msa1196980:CDS
TTCCAGTACATGAGATCTAA+AGG 0.509380 8_1:+47086801 None:intergenic
AAGGTCGGCTTTCTCAATCC+AGG 0.513274 8_1:+47091572 None:intergenic
TCCTTGACAGTGAAATCAGC+AGG 0.523551 8_1:+47087117 None:intergenic
TAAGGTCGACCAGCTTCGAC+CGG 0.525845 8_1:-47091546 Msa1196980:CDS
GAATTGCTGAGAGTTTGGTT+GGG 0.529078 8_1:-47091430 Msa1196980:CDS
TGACGAGGCTGAGGACCATC+GGG 0.535037 8_1:+47091458 None:intergenic
CTGACGAGGCTGAGGACCAT+CGG 0.535047 8_1:+47091457 None:intergenic
TTAGGTTAAGATTATGGCGG+AGG 0.537059 8_1:-47091600 Msa1196980:intron
ATGCAGAAGGGTCGTCCCGA+TGG 0.542463 8_1:-47091473 Msa1196980:CDS
AATTGCTGAGAGTTTGGTTG+GGG 0.542598 8_1:-47091429 Msa1196980:CDS
TCCTGCTGATTTCACTGTCA+AGG 0.542969 8_1:-47087118 Msa1196980:CDS
CAGCTTCGACCGGGGACTAG+TGG 0.552789 8_1:-47091536 Msa1196980:CDS
ATATGAACTTGTTAATGTTG+TGG 0.553436 8_1:-47087070 Msa1196980:CDS
ATTCGCATCTGACGAGGCTG+AGG 0.553923 8_1:+47091449 None:intergenic
TACTAAGATGGTGATGCAGA+AGG 0.561427 8_1:-47091486 Msa1196980:CDS
ATTTCTTCCAGTTGAATCAG+TGG 0.565114 8_1:-47086944 Msa1196980:three_prime_UTR
GAGAAAGCCGACCTTCACTA+AGG 0.566200 8_1:-47091564 Msa1196980:CDS
TAGTAGAGCCATCTTTCAGC+AGG 0.566386 8_1:+47087226 None:intergenic
TTTACTGCAAGAAATGATCA+AGG 0.569259 8_1:-47091386 Msa1196980:intron
TTTCTTGTGCTTTCTCAGTG+TGG 0.569415 8_1:-47086689 Msa1196980:three_prime_UTR
AAGGTCGACCAGCTTCGACC+GGG 0.573389 8_1:-47091545 Msa1196980:CDS
AGAGTGTGGCCACTAGTCCC+CGG 0.585454 8_1:+47091527 None:intergenic
GTACTGGAATATATTATATG+TGG 0.588977 8_1:-47086787 Msa1196980:three_prime_UTR
GAAAAGAGATTTGGAAGCAG+TGG 0.593894 8_1:-47086978 Msa1196980:three_prime_UTR
AGGATCAATGAGGCTTGCTG+TGG 0.611605 8_1:-47087169 Msa1196980:CDS
ACTAAGATGGTGATGCAGAA+GGG 0.612291 8_1:-47091485 Msa1196980:CDS
CAAGGTGGTGAATACTAAGA+TGG 0.621326 8_1:-47091498 Msa1196980:CDS
TGGCCACACTCTGACTGTCA+AGG 0.624809 8_1:-47091516 Msa1196980:CDS
AACTGGAAGTGAAACTGCAA+AGG 0.625153 8_1:+47091920 None:intergenic
ACATGTTTAAAGGATCAATG+AGG 0.632902 8_1:-47087179 Msa1196980:CDS
ATAAAGCAAATCCATCAACT+AGG 0.636756 8_1:-47087000 Msa1196980:three_prime_UTR
GTGGTGTAAAAGTGTCTAAG+TGG 0.639270 8_1:-47086670 Msa1196980:three_prime_UTR
AAGCTGGTCGACCTTAGTGA+AGG 0.639708 8_1:+47091553 None:intergenic
TCAGCAATTCGCATCTGACG+AGG 0.644396 8_1:+47091443 None:intergenic
CCACCTTGACAGTCAGAGTG+TGG 0.645365 8_1:+47091513 None:intergenic
CAGGATCTGTTACTTCGACA+CGG 0.653882 8_1:+47087136 None:intergenic
AGGAAACTAGGAATCATTGG+AGG 0.664520 8_1:+47086614 None:intergenic
TGGTCGACCTTAGTGAAGGT+CGG 0.669122 8_1:+47091557 None:intergenic
CCACACTCTGACTGTCAAGG+TGG 0.685740 8_1:-47091513 Msa1196980:CDS
AGGCTTGCTGTGGACAAATG+GGG 0.694034 8_1:-47087159 Msa1196980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAATCTAAATTTATTTA+AGG + chr8_1:47087982-47088001 None:intergenic 10.0%
!! AAACAAATAAATGAAAAAAA+AGG - chr8_1:47089972-47089991 Msa1196980:intron 10.0%
!! AAAAAAATCAATTCATTTAT+AGG + chr8_1:47091227-47091246 None:intergenic 10.0%
!! TCTAACATTATTATTAATTA+TGG + chr8_1:47091934-47091953 None:intergenic 10.0%
!! TCCAACATTATATTAATTTA+AGG - chr8_1:47086865-47086884 Msa1196980:three_prime_UTR 15.0%
!! ACCTTAAATTAATATAATGT+TGG + chr8_1:47086869-47086888 None:intergenic 15.0%
!!! TCATAGTATGTTTTTAATTA+TGG + chr8_1:47087555-47087574 None:intergenic 15.0%
!!! GTTATTAACTTAAATTTTAC+AGG + chr8_1:47087590-47087609 None:intergenic 15.0%
!! ATCTAAATTTATTTAAGGAT+AGG + chr8_1:47087977-47087996 None:intergenic 15.0%
!! AATAAATGAACATGTAAAAT+AGG + chr8_1:47088120-47088139 None:intergenic 15.0%
!! AAATTAAGTTTCTGTTTAAA+TGG + chr8_1:47088920-47088939 None:intergenic 15.0%
!!! TGATTTATATTTGCTATTTT+TGG - chr8_1:47089475-47089494 Msa1196980:intron 15.0%
!!! ACCAAAAAACTTATAATTTT+GGG + chr8_1:47090438-47090457 None:intergenic 15.0%
!!! AACCAAAAAACTTATAATTT+TGG + chr8_1:47090439-47090458 None:intergenic 15.0%
!! TAGTTATTTAAAAAGTGAAT+TGG - chr8_1:47090469-47090488 Msa1196980:intron 15.0%
!! TCGAAAAAATATGCATAAAA+AGG + chr8_1:47086782-47086801 None:intergenic 20.0%
!! TTGATTAATGAACAAAACTA+GGG + chr8_1:47086841-47086860 None:intergenic 20.0%
!! ATTGATTAATGAACAAAACT+AGG + chr8_1:47086842-47086861 None:intergenic 20.0%
!!! TTTGGTTTTTGTAAGATTTT+AGG - chr8_1:47086951-47086970 Msa1196980:three_prime_UTR 20.0%
!!! AAGATTTTAGGTTAAGATTA+TGG - chr8_1:47086963-47086982 Msa1196980:three_prime_UTR 20.0%
!!! GTGTAGTATTATTATGTTTT+TGG - chr8_1:47088076-47088095 Msa1196980:intron 20.0%
!!! AACACATCTCTAATAAATTT+TGG + chr8_1:47088203-47088222 None:intergenic 20.0%
!! TTAACATAAAGTCATGTAAA+TGG - chr8_1:47088255-47088274 Msa1196980:intron 20.0%
!! TGATGACAGAAATAAATAAT+TGG - chr8_1:47088655-47088674 Msa1196980:intron 20.0%
!!! ATTTTTACTTTTAACAGCTT+TGG + chr8_1:47088763-47088782 None:intergenic 20.0%
!!! AAACAGAAACTTAATTTGAT+TGG - chr8_1:47088923-47088942 Msa1196980:intron 20.0%
!!! AGATGTGGAATTATTTTATT+AGG + chr8_1:47089253-47089272 None:intergenic 20.0%
!! TTTGTTAATTTACTTAGATG+TGG + chr8_1:47089268-47089287 None:intergenic 20.0%
!! ATCAAGAAAAATAGTTAATC+AGG + chr8_1:47089459-47089478 None:intergenic 20.0%
!!! ACCCAAAATTATAAGTTTTT+TGG - chr8_1:47090434-47090453 Msa1196980:intron 20.0%
!!! TGTGAATTTTCAAATTTTCT+TGG - chr8_1:47090680-47090699 Msa1196980:intron 20.0%
!!! GTGAATTTTCAAATTTTCTT+GGG - chr8_1:47090681-47090700 Msa1196980:intron 20.0%
!!! TGAATTTTCAAATTTTCTTG+GGG - chr8_1:47090682-47090701 Msa1196980:intron 20.0%
!!! AATGTTATTTGTAATTTGCA+AGG - chr8_1:47090725-47090744 Msa1196980:intron 20.0%
!!! TTGCATTTGAAATACAAATA+TGG - chr8_1:47091071-47091090 Msa1196980:intron 20.0%
!! AACAAGTTCATATTCAATAA+GGG + chr8_1:47091492-47091511 None:intergenic 20.0%
!! TAACAAGTTCATATTCAATA+AGG + chr8_1:47091493-47091512 None:intergenic 20.0%
!!! ATTGCTTTAAATGAAAGATA+AGG - chr8_1:47091679-47091698 Msa1196980:intron 20.0%
!!! TTGCTTTAAATGAAAGATAA+GGG - chr8_1:47091680-47091699 Msa1196980:intron 20.0%
!!! TGTTTTGTTGTCTTTAATTA+TGG - chr8_1:47091727-47091746 Msa1196980:intron 20.0%
!!! GTTATAATTAGGAGTATTAA+AGG + chr8_1:47091845-47091864 None:intergenic 20.0%
! ATAATACAAGTGAATAAGCA+AGG + chr8_1:47086729-47086748 None:intergenic 25.0%
!!! ATTTTAGGTTAAGATTATGG+CGG - chr8_1:47086966-47086985 Msa1196980:three_prime_UTR 25.0%
! AAATACACAGTTACTACTAT+TGG + chr8_1:47087338-47087357 None:intergenic 25.0%
!!! TGCTCTGTTTTTATTTATCT+AGG - chr8_1:47087443-47087462 Msa1196980:intron 25.0%
! TGAGCATTCTTTACAATATA+TGG + chr8_1:47087614-47087633 None:intergenic 25.0%
!!! CTTTGTATCAATTAAGTTGA+TGG - chr8_1:47087685-47087704 Msa1196980:intron 25.0%
!! ATTAGCTTAAATACTAGAAG+AGG + chr8_1:47087834-47087853 None:intergenic 25.0%
! GAATAATTAGACAGTTTGAA+TGG + chr8_1:47087886-47087905 None:intergenic 25.0%
!! TCATTCATTTTCATCATGTA+AGG + chr8_1:47088016-47088035 None:intergenic 25.0%
! TCTTAAAATCATGATCTCAA+AGG + chr8_1:47088176-47088195 None:intergenic 25.0%
! TTCATTAAGAACATCAATAG+TGG - chr8_1:47088488-47088507 Msa1196980:intron 25.0%
!!! CTTATTAAGCACTAGTTTTT+AGG - chr8_1:47088528-47088547 Msa1196980:intron 25.0%
!! TTAAGAATTGGTGATTAAGT+TGG + chr8_1:47088556-47088575 None:intergenic 25.0%
! AAACAATATAAGCACTTGTT+GGG - chr8_1:47088629-47088648 Msa1196980:intron 25.0%
! AATATCCTATCTGTAACTAT+TGG + chr8_1:47089055-47089074 None:intergenic 25.0%
! TTTATTACAACACAAGTAAC+AGG - chr8_1:47089191-47089210 Msa1196980:intron 25.0%
!!! TTATTTTATTAGGAACTGGT+TGG + chr8_1:47089243-47089262 None:intergenic 25.0%
!!! GGAATTATTTTATTAGGAAC+TGG + chr8_1:47089247-47089266 None:intergenic 25.0%
! TAAAGCCCATTAATACAATT+GGG + chr8_1:47089331-47089350 None:intergenic 25.0%
! ATAAAGCCCATTAATACAAT+TGG + chr8_1:47089332-47089351 None:intergenic 25.0%
! TTAATACCTAGTACATAGTA+GGG + chr8_1:47089616-47089635 None:intergenic 25.0%
! ATTAATACCTAGTACATAGT+AGG + chr8_1:47089617-47089636 None:intergenic 25.0%
! CATTTACAACATATATCAAG+TGG + chr8_1:47089948-47089967 None:intergenic 25.0%
! CACTTGATATATGTTGTAAA+TGG - chr8_1:47089946-47089965 Msa1196980:intron 25.0%
! TTCTTAAACCAAGATAACTA+TGG - chr8_1:47090571-47090590 Msa1196980:intron 25.0%
! TCTTAAACCAAGATAACTAT+GGG - chr8_1:47090572-47090591 Msa1196980:intron 25.0%
! AAGAATAGTACTAGAATACA+AGG - chr8_1:47090642-47090661 Msa1196980:intron 25.0%
! AATGATTCCATATAAAAGAC+AGG + chr8_1:47090881-47090900 None:intergenic 25.0%
! TTTATATGGAATCATTGTGT+TGG - chr8_1:47090885-47090904 Msa1196980:intron 25.0%
! TTATTCTTCAATAACCTATG+AGG + chr8_1:47090974-47090993 None:intergenic 25.0%
!!! GACAAAGTTCAATTTTTTTG+TGG - chr8_1:47091014-47091033 Msa1196980:intron 25.0%
!! TTCAGCAATTTAACTTAACA+TGG + chr8_1:47091271-47091290 None:intergenic 25.0%
! GCAAAAATTGACATGTTTAA+AGG - chr8_1:47091380-47091399 Msa1196980:intron 25.0%
!!! ATATGAACTTGTTAATGTTG+TGG - chr8_1:47091499-47091518 Msa1196980:CDS 25.0%
! AACTTCTACTGTGTTATAAT+GGG - chr8_1:47091545-47091564 Msa1196980:CDS 25.0%
! TAAATGAAAGATAAGGGAAT+TGG - chr8_1:47091686-47091705 Msa1196980:intron 25.0%
! ACAAAACAAAAAGCAAGATT+TGG + chr8_1:47091715-47091734 None:intergenic 25.0%
! GTACTGGAATATATTATATG+TGG - chr8_1:47091782-47091801 Msa1196980:intron 25.0%
GCAAGGTTAATTAACATGAA+TGG + chr8_1:47086712-47086731 None:intergenic 30.0%
! GTTAGATTTTTCTTTTCGAC+TGG - chr8_1:47086913-47086932 Msa1196980:three_prime_UTR 30.0%
TTTACTGCAAGAAATGATCA+AGG - chr8_1:47087183-47087202 Msa1196980:CDS 30.0%
AACAATTGTATAGACCAAAC+AGG + chr8_1:47087241-47087260 None:intergenic 30.0%
TTAAGACAACATCACGAATT+TGG + chr8_1:47087264-47087283 None:intergenic 30.0%
ATTCTTACGTTCGTTAATTC+TGG - chr8_1:47087521-47087540 Msa1196980:intron 30.0%
AAAGAATGCTCAGTTAAATC+TGG - chr8_1:47087622-47087641 Msa1196980:intron 30.0%
!! ACATTGACTCAGTTGTAATA+GGG + chr8_1:47087770-47087789 None:intergenic 30.0%
!! AACATTGACTCAGTTGTAAT+AGG + chr8_1:47087771-47087790 None:intergenic 30.0%
ATTCTAACTACTCACTCTTT+AGG - chr8_1:47087902-47087921 Msa1196980:intron 30.0%
CAGTTCTTCATTACACAAAT+AGG + chr8_1:47088231-47088250 None:intergenic 30.0%
AAGTATAGATGGAACATCAA+CGG + chr8_1:47088449-47088468 None:intergenic 30.0%
!! TAATGAATAAGCACTGAATC+AGG + chr8_1:47088475-47088494 None:intergenic 30.0%
!! GGATGGTTCTTTTTAAGAAT+TGG + chr8_1:47088568-47088587 None:intergenic 30.0%
TCTTAAAAAGAACCATCCAT+TGG - chr8_1:47088570-47088589 Msa1196980:intron 30.0%
CAAACAATATAAGCACTTGT+TGG - chr8_1:47088628-47088647 Msa1196980:intron 30.0%
AATGTATAATCACTCACTGT+AGG - chr8_1:47088689-47088708 Msa1196980:intron 30.0%
ATGTATAATCACTCACTGTA+GGG - chr8_1:47088690-47088709 Msa1196980:intron 30.0%
CTACAAAACGTTTACCAAAT+AGG + chr8_1:47088716-47088735 None:intergenic 30.0%
! CTATTTGGTAAACGTTTTGT+AGG - chr8_1:47088714-47088733 Msa1196980:intron 30.0%
GTAAAAATGTGTGATGTGTA+AGG - chr8_1:47088775-47088794 Msa1196980:intron 30.0%
!! TTACTTTTGGGGGATTTTAA+GGG + chr8_1:47088809-47088828 None:intergenic 30.0%
!! TTTACTTTTGGGGGATTTTA+AGG + chr8_1:47088810-47088829 None:intergenic 30.0%
TGGTATGCAATAGGATATTA+TGG + chr8_1:47088900-47088919 None:intergenic 30.0%
CTGTTTAAATGGTATGCAAT+AGG + chr8_1:47088909-47088928 None:intergenic 30.0%
AGTAAGGAGGATAAATCAAA+TGG - chr8_1:47089021-47089040 Msa1196980:intron 30.0%
GTAAGGAGGATAAATCAAAT+GGG - chr8_1:47089022-47089041 Msa1196980:intron 30.0%
AAAGTCCAATAGTTACAGAT+AGG - chr8_1:47089047-47089066 Msa1196980:intron 30.0%
ACAGATAGGATATTATCTTG+AGG - chr8_1:47089061-47089080 Msa1196980:intron 30.0%
AAACAATGTCTAAGAGAGTT+AGG - chr8_1:47089095-47089114 Msa1196980:intron 30.0%
TATGTCTACACTAGAAGTAA+GGG + chr8_1:47089509-47089528 None:intergenic 30.0%
ATATGTCTACACTAGAAGTA+AGG + chr8_1:47089510-47089529 None:intergenic 30.0%
GTACTAGGTATTAATAGTTG+AGG - chr8_1:47089622-47089641 Msa1196980:intron 30.0%
GAACATGCTCTAGTAATTAT+AGG - chr8_1:47089907-47089926 Msa1196980:intron 30.0%
TACTAGCAGAATACAAAATG+TGG - chr8_1:47090001-47090020 Msa1196980:intron 30.0%
! GAATACAAAATGTGGTGTTA+TGG - chr8_1:47090009-47090028 Msa1196980:intron 30.0%
AAAAAGTGAATTGGACTACT+TGG - chr8_1:47090478-47090497 Msa1196980:intron 30.0%
GTTGTACTGCATAACTTAAT+AGG - chr8_1:47090541-47090560 Msa1196980:intron 30.0%
! GATTTTTCCCATAGTTATCT+TGG + chr8_1:47090582-47090601 None:intergenic 30.0%
!! TGCGAATTGTTGATTCATTA+GGG - chr8_1:47090924-47090943 Msa1196980:intron 30.0%
!! AATTGTTGATTCATTAGGGT+AGG - chr8_1:47090928-47090947 Msa1196980:intron 30.0%
ATGAAATTCAGTATCCTCAT+AGG - chr8_1:47090957-47090976 Msa1196980:intron 30.0%
AATTCAGCAGCAAAGAATAT+GGG + chr8_1:47091192-47091211 None:intergenic 30.0%
AAATTCAGCAGCAAAGAATA+TGG + chr8_1:47091193-47091212 None:intergenic 30.0%
! GCAATTTAACTTAACATGGA+TGG + chr8_1:47091267-47091286 None:intergenic 30.0%
ACATGTTTAAAGGATCAATG+AGG - chr8_1:47091390-47091409 Msa1196980:CDS 30.0%
CAACTTCTACTGTGTTATAA+TGG - chr8_1:47091544-47091563 Msa1196980:CDS 30.0%
ATAAAGCAAATCCATCAACT+AGG - chr8_1:47091569-47091588 Msa1196980:CDS 30.0%
! AAATCTCTTTTCCTAGTTGA+TGG + chr8_1:47091583-47091602 None:intergenic 30.0%
ATCAACTAGGAAAAGAGATT+TGG - chr8_1:47091582-47091601 Msa1196980:CDS 30.0%
CAACTGGAAGAAATAATTCT+TGG + chr8_1:47091619-47091638 None:intergenic 30.0%
GAGGATTACATGAAGTATAA+AGG + chr8_1:47091816-47091835 None:intergenic 30.0%
CGCTTTAGTTGGTTATAATT+AGG + chr8_1:47091856-47091875 None:intergenic 30.0%
CAAGAAAATTACGCTTTAGT+TGG + chr8_1:47091867-47091886 None:intergenic 30.0%
TTCACTTCCAGTTTCATTTC+AGG - chr8_1:47086659-47086678 Msa1196980:three_prime_UTR 35.0%
AATCTGACCTGAAATGAAAC+TGG + chr8_1:47086669-47086688 None:intergenic 35.0%
TGGAACGTTGTTGTGATATT+TGG - chr8_1:47086933-47086952 Msa1196980:three_prime_UTR 35.0%
! ATTTTGTAGTGATGCCTGTT+TGG - chr8_1:47087224-47087243 Msa1196980:CDS 35.0%
CAGTTACTACTATTGGATGA+CGG + chr8_1:47087331-47087350 None:intergenic 35.0%
CTCAGTTAAATCTGGATTTC+CGG - chr8_1:47087630-47087649 Msa1196980:intron 35.0%
TCAGTTAAATCTGGATTTCC+GGG - chr8_1:47087631-47087650 Msa1196980:intron 35.0%
!! AGTTGATGGCAAACAAAGAA+AGG - chr8_1:47087699-47087718 Msa1196980:intron 35.0%
TTTGCTGAAAGCAGAATCAT+AGG + chr8_1:47087740-47087759 None:intergenic 35.0%
TATGATTCTGCTTTCAGCAA+AGG - chr8_1:47087739-47087758 Msa1196980:intron 35.0%
AATTAGACAGTTTGAATGGC+TGG + chr8_1:47087882-47087901 None:intergenic 35.0%
TAAAGAATGCAAAATGCCAC+TGG + chr8_1:47088286-47088305 None:intergenic 35.0%
GAATCAGGAACAAGTATAGA+TGG + chr8_1:47088460-47088479 None:intergenic 35.0%
! CATCAATAGTGGTGTTAAGT+TGG - chr8_1:47088499-47088518 Msa1196980:intron 35.0%
TTAACAGGAATTAGCACCAA+TGG + chr8_1:47088589-47088608 None:intergenic 35.0%
TGCTAATTCCTGTTAAGCAT+TGG - chr8_1:47088593-47088612 Msa1196980:intron 35.0%
! TGGTAAACGTTTTGTAGGAT+TGG - chr8_1:47088719-47088738 Msa1196980:intron 35.0%
! GGTAAACGTTTTGTAGGATT+GGG - chr8_1:47088720-47088739 Msa1196980:intron 35.0%
ATCCCCCAAAAGTAAATATG+TGG - chr8_1:47088814-47088833 Msa1196980:intron 35.0%
TCCCCCAAAAGTAAATATGT+GGG - chr8_1:47088815-47088834 Msa1196980:intron 35.0%
!! TCCCCACATATTTACTTTTG+GGG + chr8_1:47088820-47088839 None:intergenic 35.0%
!! CTCCCCACATATTTACTTTT+GGG + chr8_1:47088821-47088840 None:intergenic 35.0%
AGCTATGGTTGTAGTTGTAT+TGG + chr8_1:47088860-47088879 None:intergenic 35.0%
GATATTATGGCATCACTCAT+GGG + chr8_1:47088887-47088906 None:intergenic 35.0%
ACCAATCAAGTGAAACTCTT+TGG + chr8_1:47088949-47088968 None:intergenic 35.0%
CAATACAACAAGCACAAGTA+AGG - chr8_1:47089005-47089024 Msa1196980:intron 35.0%
!! TATTAGGAACTGGTTGGTAA+GGG + chr8_1:47089237-47089256 None:intergenic 35.0%
! TTATTAGGAACTGGTTGGTA+AGG + chr8_1:47089238-47089257 None:intergenic 35.0%
TTAATACAATTGGGCCTGTT+GGG + chr8_1:47089322-47089341 None:intergenic 35.0%
ATTAATACAATTGGGCCTGT+TGG + chr8_1:47089323-47089342 None:intergenic 35.0%
AACAGGCCCAATTGTATTAA+TGG - chr8_1:47089322-47089341 Msa1196980:intron 35.0%
ACAGGCCCAATTGTATTAAT+GGG - chr8_1:47089323-47089342 Msa1196980:intron 35.0%
! AATGGGCTTTATCCTAGAAT+AGG - chr8_1:47089340-47089359 Msa1196980:intron 35.0%
ATCAGGCAGAAATTTCCATT+TGG + chr8_1:47089442-47089461 None:intergenic 35.0%
GCATTGCTACATATAAACGA+GGG + chr8_1:47089561-47089580 None:intergenic 35.0%
TGCATTGCTACATATAAACG+AGG + chr8_1:47089562-47089581 None:intergenic 35.0%
! CATAGTAGGGAAACGTTTTA+TGG + chr8_1:47089603-47089622 None:intergenic 35.0%
TTAGACAGGAGGATAATACA+AGG + chr8_1:47089823-47089842 None:intergenic 35.0%
GTATAATCTCAGCATTAGAC+AGG + chr8_1:47089837-47089856 None:intergenic 35.0%
AAATAGTGAGTGCTCTAGTA+TGG - chr8_1:47090107-47090126 Msa1196980:intron 35.0%
ATTGGACCTGATCCATATTT+GGG - chr8_1:47090409-47090428 Msa1196980:intron 35.0%
TTCCATATAAAAGACAGGAG+TGG + chr8_1:47090876-47090895 None:intergenic 35.0%
ATCAACAATTCGCAGCATTA+TGG + chr8_1:47090918-47090937 None:intergenic 35.0%
!! CTGCGAATTGTTGATTCATT+AGG - chr8_1:47090923-47090942 Msa1196980:intron 35.0%
! AATGTTGTGGAGTAACTTGT+TGG - chr8_1:47091512-47091531 Msa1196980:CDS 35.0%
ATTTCTTCCAGTTGAATCAG+TGG - chr8_1:47091625-47091644 Msa1196980:intron 35.0%
!! ATTAGAACCACTGATTCAAC+TGG + chr8_1:47091635-47091654 None:intergenic 35.0%
TTCCAGTACATGAGATCTAA+AGG + chr8_1:47091771-47091790 None:intergenic 35.0%
! GGAGTATTAAAGGCAAAAAG+AGG + chr8_1:47091835-47091854 None:intergenic 35.0%
AACTGGAAGTGAAACTGCAA+AGG + chr8_1:47086652-47086671 None:intergenic 40.0%
TTAGGTTAAGATTATGGCGG+AGG - chr8_1:47086969-47086988 Msa1196980:three_prime_UTR 40.0%
CAAGGTGGTGAATACTAAGA+TGG - chr8_1:47087071-47087090 Msa1196980:CDS 40.0%
! TACTAAGATGGTGATGCAGA+AGG - chr8_1:47087083-47087102 Msa1196980:CDS 40.0%
! ACTAAGATGGTGATGCAGAA+GGG - chr8_1:47087084-47087103 Msa1196980:CDS 40.0%
GAATTGCTGAGAGTTTGGTT+GGG - chr8_1:47087139-47087158 Msa1196980:CDS 40.0%
AATTGCTGAGAGTTTGGTTG+GGG - chr8_1:47087140-47087159 Msa1196980:CDS 40.0%
CTGAAAGCAGAATCATAGGA+AGG + chr8_1:47087736-47087755 None:intergenic 40.0%
ACTAGAAGAGGTTAGAAGAG+AGG + chr8_1:47087822-47087841 None:intergenic 40.0%
AGACTTGCATGTGTGTGATA+AGG + chr8_1:47087928-47087947 None:intergenic 40.0%
TCATGATCTCAAAGGTGACA+TGG + chr8_1:47088168-47088187 None:intergenic 40.0%
AATGCAAAATGCCACTGGAA+AGG + chr8_1:47088281-47088300 None:intergenic 40.0%
GTGAAGTAGAATCTTGCAGT+AGG + chr8_1:47088312-47088331 None:intergenic 40.0%
GCACAAAACCAATGCTTAAC+AGG + chr8_1:47088604-47088623 None:intergenic 40.0%
!! CCCCACATATTTACTTTTGG+GGG + chr8_1:47088819-47088838 None:intergenic 40.0%
CCCCCAAAAGTAAATATGTG+GGG - chr8_1:47088816-47088835 Msa1196980:intron 40.0%
! GCTCCCCACATATTTACTTT+TGG + chr8_1:47088822-47088841 None:intergenic 40.0%
AAGTAAATATGTGGGGAGCT+TGG - chr8_1:47088823-47088842 Msa1196980:intron 40.0%
GGATATTATGGCATCACTCA+TGG + chr8_1:47088888-47088907 None:intergenic 40.0%
GCCAAAGAGTTTCACTTGAT+TGG - chr8_1:47088945-47088964 Msa1196980:intron 40.0%
TACAACAAGCACAAGTAAGG+AGG - chr8_1:47089008-47089027 Msa1196980:intron 40.0%
! TTTTATCACGCAATCTGCGT+TGG - chr8_1:47089127-47089146 Msa1196980:intron 40.0%
ATGCTTCTCATTGCTCCAAA+TGG - chr8_1:47089424-47089443 Msa1196980:intron 40.0%
! AGGGAAACGTTTTATGGCAT+GGG + chr8_1:47089597-47089616 None:intergenic 40.0%
! TAGGGAAACGTTTTATGGCA+TGG + chr8_1:47089598-47089617 None:intergenic 40.0%
ACGTTTCCCTACTATGTACT+AGG - chr8_1:47089607-47089626 Msa1196980:intron 40.0%
TAATCTCAGCATTAGACAGG+AGG + chr8_1:47089834-47089853 None:intergenic 40.0%
!! CATTGGTTCAATTGCACCTA+AGG + chr8_1:47090162-47090181 None:intergenic 40.0%
ACAGACTCCAAAAATCACGA+CGG - chr8_1:47090201-47090220 Msa1196980:intron 40.0%
CTTATGCAGTTTGACAGAGA+CGG + chr8_1:47090306-47090325 None:intergenic 40.0%
CAAATATGGATCAGGTCCAA+TGG + chr8_1:47090410-47090429 None:intergenic 40.0%
CATTGGACCTGATCCATATT+TGG - chr8_1:47090408-47090427 Msa1196980:intron 40.0%
TTGGACCTGATCCATATTTG+GGG - chr8_1:47090410-47090429 Msa1196980:intron 40.0%
!! AATTTTGGGTGCCCCAAATA+TGG + chr8_1:47090424-47090443 None:intergenic 40.0%
ATAGGGCATGTCAAATGGTT+GGG + chr8_1:47090514-47090533 None:intergenic 40.0%
ATGTTGAGTTTGTAGCCTTC+TGG - chr8_1:47090836-47090855 Msa1196980:intron 40.0%
GCAATTGATCATTGTCCAGA+AGG + chr8_1:47090854-47090873 None:intergenic 40.0%
! TGCCACTCCTGTCTTTTATA+TGG - chr8_1:47090871-47090890 Msa1196980:intron 40.0%
GAAAAGAGATTTGGAAGCAG+TGG - chr8_1:47091591-47091610 Msa1196980:CDS 40.0%
GACCTTTAGATCTCATGTAC+TGG - chr8_1:47091766-47091785 Msa1196980:intron 40.0%
TTTCTTGTGCTTTCTCAGTG+TGG - chr8_1:47091880-47091899 Msa1196980:intron 40.0%
!! GTGGTGTAAAAGTGTCTAAG+TGG - chr8_1:47091899-47091918 Msa1196980:intron 40.0%
AGGAAACTAGGAATCATTGG+AGG + chr8_1:47091958-47091977 None:intergenic 40.0%
GATGCGAATTGCTGAGAGTT+TGG - chr8_1:47087134-47087153 Msa1196980:CDS 45.0%
CGAATTGCTGAGAGTTTGGT+TGG - chr8_1:47087138-47087157 Msa1196980:CDS 45.0%
TGGGGTTTAGTGGAGTGATT+TGG + chr8_1:47087362-47087381 None:intergenic 45.0%
TCCACTAAACCCCACTTTAG+TGG - chr8_1:47087368-47087387 Msa1196980:intron 45.0%
ACCACTAAAGTGGGGTTTAG+TGG + chr8_1:47087372-47087391 None:intergenic 45.0%
! ACCCCACTTTAGTGGTGTTA+TGG - chr8_1:47087376-47087395 Msa1196980:intron 45.0%
CCCATAACACCACTAAAGTG+GGG + chr8_1:47087380-47087399 None:intergenic 45.0%
!! CCCCACTTTAGTGGTGTTAT+GGG - chr8_1:47087377-47087396 Msa1196980:intron 45.0%
CCCCATAACACCACTAAAGT+GGG + chr8_1:47087381-47087400 None:intergenic 45.0%
!! CCCACTTTAGTGGTGTTATG+GGG - chr8_1:47087378-47087397 Msa1196980:intron 45.0%
TCCCCATAACACCACTAAAG+TGG + chr8_1:47087382-47087401 None:intergenic 45.0%
GTTAAATCTGGATTTCCGGG+AGG - chr8_1:47087634-47087653 Msa1196980:intron 45.0%
! TTGAATGGCTGGTTGCTGTT+AGG + chr8_1:47087871-47087890 None:intergenic 45.0%
! TTTTACTCAGAGACGCAGCT+TGG - chr8_1:47088048-47088067 Msa1196980:intron 45.0%
GATCTCAAAGGTGACATGGA+TGG + chr8_1:47088164-47088183 None:intergenic 45.0%
CATGTAAATGGCCTTTCCAG+TGG - chr8_1:47088267-47088286 Msa1196980:intron 45.0%
CAGGAATTAGCACCAATGGA+TGG + chr8_1:47088585-47088604 None:intergenic 45.0%
TCACTCATGGGAAAGAGCTA+TGG + chr8_1:47088875-47088894 None:intergenic 45.0%
! ATTGGTAGTTTCACCCTAGC+AGG - chr8_1:47088963-47088982 Msa1196980:intron 45.0%
! TTGGTAGTTTCACCCTAGCA+GGG - chr8_1:47088964-47088983 Msa1196980:intron 45.0%
AAAACTGCCTACAGCGACTT+CGG + chr8_1:47089153-47089172 None:intergenic 45.0%
GTAACAGGAAACTGAGAGCT+TGG - chr8_1:47089206-47089225 Msa1196980:intron 45.0%
GCAATAGACCTCCTATTGTG+AGG + chr8_1:47089374-47089393 None:intergenic 45.0%
! GAGTGCTCTAGTATGGACTA+CGG - chr8_1:47090114-47090133 Msa1196980:intron 45.0%
TCAATTGCACCTAAGGAGGT+CGG + chr8_1:47090155-47090174 None:intergenic 45.0%
TGGTTCAATTGCACCTAAGG+AGG + chr8_1:47090159-47090178 None:intergenic 45.0%
TGCTATGCAAGCACCAAAGT+CGG + chr8_1:47090253-47090272 None:intergenic 45.0%
CTGTTCGCCTAATGTATGAC+CGG - chr8_1:47090357-47090376 Msa1196980:intron 45.0%
ATTGCAGCCGGTCATACATT+AGG + chr8_1:47090367-47090386 None:intergenic 45.0%
AATGTATGACCGGCTGCAAT+CGG - chr8_1:47090367-47090386 Msa1196980:intron 45.0%
ATATGGATCAGGTCCAATGG+TGG + chr8_1:47090407-47090426 None:intergenic 45.0%
CATAGGGCATGTCAAATGGT+TGG + chr8_1:47090515-47090534 None:intergenic 45.0%
CAACCATTTGACATGCCCTA+TGG - chr8_1:47090513-47090532 Msa1196980:intron 45.0%
AGACCATAGGGCATGTCAAA+TGG + chr8_1:47090519-47090538 None:intergenic 45.0%
TTTGACATGCCCTATGGTCT+TGG - chr8_1:47090519-47090538 Msa1196980:intron 45.0%
GCAGTACAACCAAGACCATA+GGG + chr8_1:47090531-47090550 None:intergenic 45.0%
TGCAGTACAACCAAGACCAT+AGG + chr8_1:47090532-47090551 None:intergenic 45.0%
TAGTAGAGCCATCTTTCAGC+AGG + chr8_1:47091346-47091365 None:intergenic 45.0%
! CAGGATCTGTTACTTCGACA+CGG + chr8_1:47091436-47091455 None:intergenic 45.0%
!! TCCTGCTGATTTCACTGTCA+AGG - chr8_1:47091451-47091470 Msa1196980:CDS 45.0%
TCCTTGACAGTGAAATCAGC+AGG + chr8_1:47091455-47091474 None:intergenic 45.0%
!! AAAAATAATTATTGAAAAAT+TGG + chr8_1:47091042-47091061 None:intergenic 5.0%
! ATTATGGCGGAGGCAAAACC+TGG - chr8_1:47086979-47086998 Msa1196980:three_prime_UTR 50.0%
! AAGGTCGGCTTTCTCAATCC+AGG + chr8_1:47087000-47087019 None:intergenic 50.0%
GAGAAAGCCGACCTTCACTA+AGG - chr8_1:47087005-47087024 Msa1196980:three_prime_UTR 50.0%
TGGTCGACCTTAGTGAAGGT+CGG + chr8_1:47087015-47087034 None:intergenic 50.0%
AAGCTGGTCGACCTTAGTGA+AGG + chr8_1:47087019-47087038 None:intergenic 50.0%
TCAGCAATTCGCATCTGACG+AGG + chr8_1:47087129-47087148 None:intergenic 50.0%
AGTTTGGTTGGGGATGAGAC+TGG - chr8_1:47087150-47087169 Msa1196980:CDS 50.0%
GTTTGGTTGGGGATGAGACT+GGG - chr8_1:47087151-47087170 Msa1196980:CDS 50.0%
!! AGTGGTGTTATGGGGAGAAG+TGG - chr8_1:47087386-47087405 Msa1196980:intron 50.0%
TCCTTTCCTCACACCAAGAC+AGG - chr8_1:47088412-47088431 Msa1196980:intron 50.0%
!! GAACATCAACGGACTAGCCT+TGG + chr8_1:47088438-47088457 None:intergenic 50.0%
CACTCACTGTAGGGCCTATT+TGG - chr8_1:47088699-47088718 Msa1196980:intron 50.0%
ACACATGCTCAACCCTGCTA+GGG + chr8_1:47088979-47088998 None:intergenic 50.0%
CACACATTCTCTGTCCCAAC+AGG - chr8_1:47089305-47089324 Msa1196980:intron 50.0%
GAGGACTGAGGACCTATTCT+AGG + chr8_1:47089355-47089374 None:intergenic 50.0%
AGGTCCTCAGTCCTCACAAT+AGG - chr8_1:47089360-47089379 Msa1196980:intron 50.0%
TCCTCAGTCCTCACAATAGG+AGG - chr8_1:47089363-47089382 Msa1196980:intron 50.0%
ACCTCCTATTGTGAGGACTG+AGG + chr8_1:47089367-47089386 None:intergenic 50.0%
AATTGCACCTAAGGAGGTCG+GGG + chr8_1:47090153-47090172 None:intergenic 50.0%
CAATTGCACCTAAGGAGGTC+GGG + chr8_1:47090154-47090173 None:intergenic 50.0%
CTGACAGTTGGGTATGGCAT+TGG + chr8_1:47090179-47090198 None:intergenic 50.0%
CTGTAGCTGACAGTTGGGTA+TGG + chr8_1:47090185-47090204 None:intergenic 50.0%
GGAGTCTGTAGCTGACAGTT+GGG + chr8_1:47090190-47090209 None:intergenic 50.0%
TGGAGTCTGTAGCTGACAGT+TGG + chr8_1:47090191-47090210 None:intergenic 50.0%
TATGCAAGCACCAAAGTCGG+AGG + chr8_1:47090250-47090269 None:intergenic 50.0%
!! TTTGGTGCTTGCATAGCACC+TGG - chr8_1:47090255-47090274 Msa1196980:intron 50.0%
! TTGGTGCTTGCATAGCACCT+GGG - chr8_1:47090256-47090275 Msa1196980:intron 50.0%
TTGACAGAGACGGTAGGTTG+TGG + chr8_1:47090296-47090315 None:intergenic 50.0%
TGCAGTTTGACAGAGACGGT+AGG + chr8_1:47090302-47090321 None:intergenic 50.0%
CGGTCATACATTAGGCGAAC+AGG + chr8_1:47090359-47090378 None:intergenic 50.0%
GCATGTCAAATGGTTGGGAC+AGG + chr8_1:47090509-47090528 None:intergenic 50.0%
TCAGTCGACCTGCTGAAAGA+TGG - chr8_1:47091335-47091354 Msa1196980:intron 50.0%
!! AGGATCAATGAGGCTTGCTG+TGG - chr8_1:47091400-47091419 Msa1196980:CDS 50.0%
!! TGAGGCTTGCTGTGGACAAA+TGG - chr8_1:47091408-47091427 Msa1196980:CDS 50.0%
!! GAGGCTTGCTGTGGACAAAT+GGG - chr8_1:47091409-47091428 Msa1196980:CDS 50.0%
!! AGGCTTGCTGTGGACAAATG+GGG - chr8_1:47091410-47091429 Msa1196980:CDS 50.0%
TAAGGTCGACCAGCTTCGAC+CGG - chr8_1:47087023-47087042 Msa1196980:three_prime_UTR 55.0%
TGGCCACACTCTGACTGTCA+AGG - chr8_1:47087053-47087072 Msa1196980:exon 55.0%
CCACCTTGACAGTCAGAGTG+TGG + chr8_1:47087059-47087078 None:intergenic 55.0%
CCACACTCTGACTGTCAAGG+TGG - chr8_1:47087056-47087075 Msa1196980:exon 55.0%
ATTCGCATCTGACGAGGCTG+AGG + chr8_1:47087123-47087142 None:intergenic 55.0%
CATCTGTCAGCTCTTCCTCC+CGG + chr8_1:47087652-47087671 None:intergenic 55.0%
! GCCTGTCTTGGTGTGAGGAA+AGG + chr8_1:47088416-47088435 None:intergenic 55.0%
CACACATGCTCAACCCTGCT+AGG + chr8_1:47088980-47088999 None:intergenic 55.0%
CTAGCAGGGTTGAGCATGTG+TGG - chr8_1:47088978-47088997 Msa1196980:intron 55.0%
!! GGAACTGGTTGGTAAGGGAG+AGG + chr8_1:47089232-47089251 None:intergenic 55.0%
ATTGCACCTAAGGAGGTCGG+GGG + chr8_1:47090152-47090171 None:intergenic 55.0%
! CCAGCAGCCGTCGTGATTTT+TGG + chr8_1:47090211-47090230 None:intergenic 55.0%
CCAAAAATCACGACGGCTGC+TGG - chr8_1:47090208-47090227 Msa1196980:intron 55.0%
! ATCACGACGGCTGCTGGTTA+TGG - chr8_1:47090214-47090233 Msa1196980:intron 55.0%
TGGAATTCTGATCCGCACCC+AGG + chr8_1:47090276-47090295 None:intergenic 55.0%
!! CCGTTAGTACCGATTGCAGC+CGG + chr8_1:47090379-47090398 None:intergenic 55.0%
CCGGCTGCAATCGGTACTAA+CGG - chr8_1:47090376-47090395 Msa1196980:intron 55.0%
CGGCTGCAATCGGTACTAAC+GGG - chr8_1:47090377-47090396 Msa1196980:intron 55.0%
CTGCAATCGGTACTAACGGG+AGG - chr8_1:47090380-47090399 Msa1196980:intron 55.0%
ACTAACGGGAGGTCCACCAT+TGG - chr8_1:47090391-47090410 Msa1196980:intron 55.0%
GGGTGCCCCAAATATGGATC+AGG + chr8_1:47090418-47090437 None:intergenic 55.0%
AAGGTCGACCAGCTTCGACC+GGG - chr8_1:47087024-47087043 Msa1196980:three_prime_UTR 60.0%
AGAGTGTGGCCACTAGTCCC+CGG + chr8_1:47087045-47087064 None:intergenic 60.0%
ATGCAGAAGGGTCGTCCCGA+TGG - chr8_1:47087096-47087115 Msa1196980:CDS 60.0%
TGACGAGGCTGAGGACCATC+GGG + chr8_1:47087114-47087133 None:intergenic 60.0%
CTGACGAGGCTGAGGACCAT+CGG + chr8_1:47087115-47087134 None:intergenic 60.0%
! CCTTGGCCTGTCTTGGTGTG+AGG + chr8_1:47088421-47088440 None:intergenic 60.0%
CCTCACACCAAGACAGGCCA+AGG - chr8_1:47088418-47088437 Msa1196980:intron 60.0%
!! GGACTAGCCTTGGCCTGTCT+TGG + chr8_1:47088428-47088447 None:intergenic 60.0%
AGGAGGTCGGGGGTTTGGAT+AGG + chr8_1:47090142-47090161 None:intergenic 60.0%
TCCAAACCCCCGACCTCCTT+AGG - chr8_1:47090143-47090162 Msa1196980:intron 60.0%
ACCTAAGGAGGTCGGGGGTT+TGG + chr8_1:47090147-47090166 None:intergenic 60.0%
GCTTGCATAGCACCTGGGTG+CGG - chr8_1:47090261-47090280 Msa1196980:intron 60.0%
AGGTCGACCAGCTTCGACCG+GGG - chr8_1:47087025-47087044 Msa1196980:three_prime_UTR 65.0%
CACTAGTCCCCGGTCGAAGC+TGG + chr8_1:47087035-47087054 None:intergenic 65.0%
CAGCTTCGACCGGGGACTAG+TGG - chr8_1:47087033-47087052 Msa1196980:three_prime_UTR 65.0%
! GCGTTGGCCGAAGTCGCTGT+AGG - chr8_1:47089143-47089162 Msa1196980:intron 65.0%
! CGACGGCTGCTGGTTATGGC+AGG - chr8_1:47090218-47090237 Msa1196980:intron 65.0%
CAGGCGCACACCTCCGACTT+TGG - chr8_1:47090237-47090256 Msa1196980:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 47086612 47091979 47086612 ID=Msa1196980;Name=Msa1196980
chr8_1 mRNA 47086612 47091979 47086612 ID=Msa1196980-mRNA-1;Parent=Msa1196980;Name=Msa1196980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|1|1|0.5|0.33|3|453|162
chr8_1 exon 47086612 47087252 47086612 ID=Msa1196980-mRNA-1:exon:14918;Parent=Msa1196980-mRNA-1
chr8_1 exon 47091387 47091618 47091387 ID=Msa1196980-mRNA-1:exon:14917;Parent=Msa1196980-mRNA-1
chr8_1 exon 47091911 47091979 47091911 ID=Msa1196980-mRNA-1:exon:14916;Parent=Msa1196980-mRNA-1
chr8_1 CDS 47091911 47091979 47091911 ID=Msa1196980-mRNA-1:cds;Parent=Msa1196980-mRNA-1
chr8_1 CDS 47091387 47091618 47091387 ID=Msa1196980-mRNA-1:cds;Parent=Msa1196980-mRNA-1
chr8_1 CDS 47087065 47087252 47087065 ID=Msa1196980-mRNA-1:cds;Parent=Msa1196980-mRNA-1
chr8_1 three_prime_UTR 47086612 47087064 47086612 ID=Msa1196980-mRNA-1:three_prime_utr;Parent=Msa1196980-mRNA-1
Gene Sequence

>Msa1196980

GGCTACGTTTCACTTTTCATTTTCAGATCTCTTTTTGCCTTTGCAGTTTCACTTCCAGTTTCATTTCAGGTTAAGATTATGGCGGAGGCAAAACCTGGATTGAGAAAGCCGACCTTCACTAAGGTCGACCAGCTTCGACCGGGGACTAGTGGCCACACTCTGACTGTCAAGGTGGTGAATACTAAGATGGTGATGCAGAAGGGTCGTCCCGATGGTCCTCAGCCTCGTCAGATGCGAATTGCTGAGAGTTTGGTTGGGGATGAGACTGGGATGATCATCTTTACTGCAAGAAATGATCAAGTCGACCTGCTGAAAGATGGCTCTACTATCATTCTGCGAAATGCAAAAATTGACATGTTTAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGTGTCGAAGTAACAGATCCTGCTGATTTCACTGTCAAGGAAGACAACAACTTGTCCCTTATTGAATATGAACTTGTTAATGTTGTGGAGTAA
Protein sequence

>Msa1196980

GYVSLFIFRSLFAFAVSLPVSFQVKIMAEAKPGLRKPTFTKVDQLRPGTSGHTLTVKVVNTKMVMQKGRPDGPQPRQMRIAESLVGDETGMIIFTARNDQVDLLKDGSTIILRNAKIDMFKGSMRLAVDKWGRVEVTDPADFTVKEDNNLSLIEYELVNVVE*