AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380300 MtrunA17_Chr3g0145771 100.000 151 0 0 1 151 66 216 3.73e-111 314
Msa0380300 MtrunA17_Chr3g0139231 72.143 140 33 2 1 137 1 137 6.88e-71 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380300 AT1G02140.1 88.591 149 17 0 3 151 2 150 8.19e-99 281

Find 64 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCACTTGCTTCCATTGT+TGG 0.189002 3_1:+81977245 Msa0380300:three_prime_UTR
TAGTTTCGAGTTTGTCTTCT+TGG 0.210632 3_1:+81977077 Msa0380300:three_prime_UTR
GGTGGAACCAGGTTAATATT+AGG 0.283202 3_1:-81977345 None:intergenic
TTCAAACTTCATTAGCTAAA+GGG 0.324358 3_1:-81977126 None:intergenic
TCCTTTACTACTTCCAAGAT+TGG 0.348725 3_1:+81976398 Msa0380300:CDS
TATTAAACTCTGGTGGTTGC+TGG 0.349843 3_1:+81975938 Msa0380300:five_prime_UTR
TAAAAGATGCGAAGGCCTTC+AGG 0.353524 3_1:-81976452 None:intergenic
AAAGGTTATCCATTCAAATC+AGG 0.354030 3_1:-81977175 None:intergenic
CAGGAACTTGAGATTGTTAT+GGG 0.355218 3_1:+81976362 Msa0380300:CDS
TCAGGAACTTGAGATTGTTA+TGG 0.374992 3_1:+81976361 Msa0380300:CDS
AATCGATCGGCGGTTATTGT+TGG 0.395434 3_1:+81975966 Msa0380300:five_prime_UTR
TTTCAAACTTCATTAGCTAA+AGG 0.412577 3_1:-81977127 None:intergenic
CGACCAACACGGTCTGGTTC+AGG 0.414314 3_1:-81976338 None:intergenic
GAGATACTACGTTGGTCATA+AGG 0.416637 3_1:+81976033 Msa0380300:CDS
GTGGAACCAGGTTAATATTA+GGG 0.417421 3_1:-81977344 None:intergenic
TATCATACAACACTAAATAC+TGG 0.420013 3_1:-81977298 None:intergenic
ATCAACAAGAGAACCAATCT+TGG 0.427300 3_1:-81976411 None:intergenic
TAATAGTGAACATCTTATAT+AGG 0.432174 3_1:-81977056 None:intergenic
ACCAGACCGTGTTGGTCGTC+AGG 0.432239 3_1:+81976343 Msa0380300:CDS
GTTGGTCATAAGGGTAAATT+CGG 0.435065 3_1:+81976043 Msa0380300:CDS
AATATGTATCGGTGATGAAC+AGG 0.447090 3_1:+81977148 Msa0380300:three_prime_UTR
TCGAGTTGGGCCTTTCCACC+AGG 0.453183 3_1:-81975868 None:intergenic
TCCTGACGACCAACACGGTC+TGG 0.460919 3_1:-81976344 None:intergenic
CAGACAGCATGCTCCAACAA+TGG 0.471628 3_1:-81977258 None:intergenic
GGCTACAAAAGAAGCGGGCC+TGG 0.482296 3_1:+81975850 None:intergenic
ACCAATCTTGGAAGTAGTAA+AGG 0.483775 3_1:-81976399 None:intergenic
ATCAATCATGTGGTGGAACC+AGG 0.493929 3_1:-81977356 None:intergenic
AGATACTACGTTGGTCATAA+GGG 0.498454 3_1:+81976034 Msa0380300:CDS
TGAAGGAGGATGATAACAAC+TGG 0.499238 3_1:+81976315 Msa0380300:CDS
CCACCACATGATTGATGACA+TGG 0.502437 3_1:+81977363 Msa0380300:three_prime_UTR
GCGGTTATTGTTGGATCAGT+AGG 0.504722 3_1:+81975975 Msa0380300:five_prime_UTR
AAGAAGCGGGCCTGGTGGAA+AGG 0.505575 3_1:+81975858 Msa0380300:five_prime_UTR
TCAAACTTCATTAGCTAAAG+GGG 0.509998 3_1:-81977125 None:intergenic
ACAGGAAAACCTGATTTGAA+TGG 0.511064 3_1:+81977166 Msa0380300:three_prime_UTR
GTTGGAGCATGCTGTCTGTA+TGG 0.513636 3_1:+81977263 Msa0380300:three_prime_UTR
GCATAACGAAGCTTACCATC+TGG 0.517649 3_1:-81976094 None:intergenic
AGTAAGGGCTACAAAAGAAG+CGG 0.544722 3_1:+81975844 None:intergenic
TCTACTCCCTAATATTAACC+TGG 0.548482 3_1:+81977338 Msa0380300:three_prime_UTR
CGACACTCACGAAGAACAGC+AGG 0.558457 3_1:-81976172 None:intergenic
TCAACAACAACAGATTATGA+AGG 0.558662 3_1:+81976298 Msa0380300:intron
CGATACAATCATTCGTAAGG+AGG 0.561171 3_1:+81976138 Msa0380300:CDS
AAACGATACAATCATTCGTA+AGG 0.563607 3_1:+81976135 Msa0380300:CDS
GAGTTTGAGTTCCGTCCAGA+TGG 0.565284 3_1:+81976079 Msa0380300:CDS
CAAGATAGTAAAAGATGCGA+AGG 0.565769 3_1:-81976460 None:intergenic
ATGAAGTTTGAAATATGTAT+CGG 0.572232 3_1:+81977137 Msa0380300:three_prime_UTR
AAAGCAAAGATCTGGTACAA+AGG 0.574547 3_1:-81977193 None:intergenic
TTATTGTTGGATCAGTAGGA+TGG 0.578574 3_1:+81975979 Msa0380300:exon
CTCGCAGTCATATTAAACTC+TGG 0.583050 3_1:+81975928 Msa0380300:five_prime_UTR
GTAAGGGCTACAAAAGAAGC+GGG 0.590136 3_1:+81975845 None:intergenic
CAAAGCAGTGCTGATCCTGA+AGG 0.593679 3_1:+81976437 Msa0380300:CDS
TATTGTTGGATCAGTAGGAT+GGG 0.602444 3_1:+81975980 Msa0380300:exon
CCATGTCATCAATCATGTGG+TGG 0.605732 3_1:-81977363 None:intergenic
AACGAAGCTTACCATCTGGA+CGG 0.634567 3_1:-81976090 None:intergenic
AATCCATGTCATCAATCATG+TGG 0.640325 3_1:-81977366 None:intergenic
GTTGCTGGTTGAGAATCGAT+CGG 0.642873 3_1:+81975953 Msa0380300:five_prime_UTR
ACAACAACAGATTATGAAGG+AGG 0.642882 3_1:+81976301 Msa0380300:intron
CAAGTTCCTGACGACCAACA+CGG 0.649649 3_1:-81976349 None:intergenic
TACAAAAGAAGCGGGCCTGG+TGG 0.662815 3_1:+81975853 None:intergenic
GCAGTCATATTAAACTCTGG+TGG 0.677409 3_1:+81975931 Msa0380300:five_prime_UTR
TGGCCTGAACCAGACCGTGT+TGG 0.677826 3_1:+81976335 Msa0380300:CDS
TTCTACTTGAGATACTACGT+TGG 0.697052 3_1:+81976025 Msa0380300:CDS
GCTGGTTGAGAATCGATCGG+CGG 0.699661 3_1:+81975956 Msa0380300:five_prime_UTR
TCGTATTATTTCTGACAGCG+AGG 0.703758 3_1:+81976195 Msa0380300:CDS
AGGAACTTGAGATTGTTATG+GGG 0.708397 3_1:+81976363 Msa0380300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATAAGCAATAATAAAAA+AGG - chr3_1:81976273-81976292 None:intergenic 15.0%
!! TAAAGTATATTTGTGAATTT+AGG - chr3_1:81976616-81976635 None:intergenic 15.0%
!! CAAAAATAATTATAATTAGC+AGG - chr3_1:81976982-81977001 None:intergenic 15.0%
!!! CTAATTATAATTATTTTTGC+AGG + chr3_1:81976983-81977002 Msa0380300:intron 15.0%
!!! ATCTTTGCTTTTTATATTTA+TGG + chr3_1:81977205-81977224 Msa0380300:three_prime_UTR 15.0%
!! GTTATAAGCAATAATAAAAA+AGG - chr3_1:81976273-81976292 None:intergenic 15.0%
!! TAAAGTATATTTGTGAATTT+AGG - chr3_1:81976616-81976635 None:intergenic 15.0%
!! CAAAAATAATTATAATTAGC+AGG - chr3_1:81976982-81977001 None:intergenic 15.0%
!!! CTAATTATAATTATTTTTGC+AGG + chr3_1:81976983-81977002 Msa0380300:intron 15.0%
!!! ATCTTTGCTTTTTATATTTA+TGG + chr3_1:81977205-81977224 Msa0380300:three_prime_UTR 15.0%
!! AATAATAAAAAAGGAAAAGG+GGG - chr3_1:81976264-81976283 None:intergenic 20.0%
!! CAATAATAAAAAAGGAAAAG+GGG - chr3_1:81976265-81976284 None:intergenic 20.0%
!! GCAATAATAAAAAAGGAAAA+GGG - chr3_1:81976266-81976285 None:intergenic 20.0%
!! AGCAATAATAAAAAAGGAAA+AGG - chr3_1:81976267-81976286 None:intergenic 20.0%
!! AATACAGTCAAAAAATCATA+GGG - chr3_1:81976858-81976877 None:intergenic 20.0%
!! AAATACAGTCAAAAAATCAT+AGG - chr3_1:81976859-81976878 None:intergenic 20.0%
!! TAATAGTGAACATCTTATAT+AGG - chr3_1:81977059-81977078 None:intergenic 20.0%
!!! ATGAAGTTTGAAATATGTAT+CGG + chr3_1:81977137-81977156 Msa0380300:three_prime_UTR 20.0%
!! AAATATAAAAAGCAAAGATC+TGG - chr3_1:81977204-81977223 None:intergenic 20.0%
!!! GCTTTTTATATTTATGGTTT+TGG + chr3_1:81977211-81977230 Msa0380300:three_prime_UTR 20.0%
!! AATAATAAAAAAGGAAAAGG+GGG - chr3_1:81976264-81976283 None:intergenic 20.0%
!! CAATAATAAAAAAGGAAAAG+GGG - chr3_1:81976265-81976284 None:intergenic 20.0%
!! GCAATAATAAAAAAGGAAAA+GGG - chr3_1:81976266-81976285 None:intergenic 20.0%
!! AGCAATAATAAAAAAGGAAA+AGG - chr3_1:81976267-81976286 None:intergenic 20.0%
!! AATACAGTCAAAAAATCATA+GGG - chr3_1:81976858-81976877 None:intergenic 20.0%
!! AAATACAGTCAAAAAATCAT+AGG - chr3_1:81976859-81976878 None:intergenic 20.0%
!! TAATAGTGAACATCTTATAT+AGG - chr3_1:81977059-81977078 None:intergenic 20.0%
!!! ATGAAGTTTGAAATATGTAT+CGG + chr3_1:81977137-81977156 Msa0380300:three_prime_UTR 20.0%
!! AAATATAAAAAGCAAAGATC+TGG - chr3_1:81977204-81977223 None:intergenic 20.0%
!!! GCTTTTTATATTTATGGTTT+TGG + chr3_1:81977211-81977230 Msa0380300:three_prime_UTR 20.0%
!! TAAATTCGGACATGAATTTT+TGG + chr3_1:81976057-81976076 Msa0380300:CDS 25.0%
!!! GATTGTATCGTTTTTGTAAT+TGG - chr3_1:81976128-81976147 None:intergenic 25.0%
! ATAATAAAAAAGGAAAAGGG+GGG - chr3_1:81976263-81976282 None:intergenic 25.0%
! TTTGGTATGCTTAAATTTGA+AGG - chr3_1:81976506-81976525 None:intergenic 25.0%
!! AATTTGAGTTAAGTTCATGA+AGG - chr3_1:81976551-81976570 None:intergenic 25.0%
! TATATTTGTGAATTTAGGCA+TGG - chr3_1:81976611-81976630 None:intergenic 25.0%
! CACAAATATACTTTAGACAA+TGG + chr3_1:81976621-81976640 Msa0380300:intron 25.0%
! TCATATATTGATACTTTAGC+TGG + chr3_1:81976646-81976665 Msa0380300:intron 25.0%
! CATATATTGATACTTTAGCT+GGG + chr3_1:81976647-81976666 Msa0380300:intron 25.0%
! AAAAATAACAGCAAAGGAAT+GGG - chr3_1:81976711-81976730 None:intergenic 25.0%
! AAAAAATAACAGCAAAGGAA+TGG - chr3_1:81976712-81976731 None:intergenic 25.0%
! CAGTAAAAAAATAACAGCAA+AGG - chr3_1:81976717-81976736 None:intergenic 25.0%
! ATACAGTCAAAAAATCATAG+GGG - chr3_1:81976857-81976876 None:intergenic 25.0%
! CATCAAACAAATCTTGTATT+GGG - chr3_1:81976936-81976955 None:intergenic 25.0%
! ACATCAAACAAATCTTGTAT+TGG - chr3_1:81976937-81976956 None:intergenic 25.0%
! TTCAAACTTCATTAGCTAAA+GGG - chr3_1:81977129-81977148 None:intergenic 25.0%
! TTTCAAACTTCATTAGCTAA+AGG - chr3_1:81977130-81977149 None:intergenic 25.0%
! TATCATACAACACTAAATAC+TGG - chr3_1:81977301-81977320 None:intergenic 25.0%
!! TAAATTCGGACATGAATTTT+TGG + chr3_1:81976057-81976076 Msa0380300:CDS 25.0%
!!! GATTGTATCGTTTTTGTAAT+TGG - chr3_1:81976128-81976147 None:intergenic 25.0%
! ATAATAAAAAAGGAAAAGGG+GGG - chr3_1:81976263-81976282 None:intergenic 25.0%
! TTTGGTATGCTTAAATTTGA+AGG - chr3_1:81976506-81976525 None:intergenic 25.0%
!! AATTTGAGTTAAGTTCATGA+AGG - chr3_1:81976551-81976570 None:intergenic 25.0%
! TATATTTGTGAATTTAGGCA+TGG - chr3_1:81976611-81976630 None:intergenic 25.0%
! CACAAATATACTTTAGACAA+TGG + chr3_1:81976621-81976640 Msa0380300:intron 25.0%
! TCATATATTGATACTTTAGC+TGG + chr3_1:81976646-81976665 Msa0380300:intron 25.0%
! CATATATTGATACTTTAGCT+GGG + chr3_1:81976647-81976666 Msa0380300:intron 25.0%
! AAAAATAACAGCAAAGGAAT+GGG - chr3_1:81976711-81976730 None:intergenic 25.0%
! AAAAAATAACAGCAAAGGAA+TGG - chr3_1:81976712-81976731 None:intergenic 25.0%
! CAGTAAAAAAATAACAGCAA+AGG - chr3_1:81976717-81976736 None:intergenic 25.0%
! ATACAGTCAAAAAATCATAG+GGG - chr3_1:81976857-81976876 None:intergenic 25.0%
! CATCAAACAAATCTTGTATT+GGG - chr3_1:81976936-81976955 None:intergenic 25.0%
! ACATCAAACAAATCTTGTAT+TGG - chr3_1:81976937-81976956 None:intergenic 25.0%
! TTCAAACTTCATTAGCTAAA+GGG - chr3_1:81977129-81977148 None:intergenic 25.0%
! TTTCAAACTTCATTAGCTAA+AGG - chr3_1:81977130-81977149 None:intergenic 25.0%
! TATCATACAACACTAAATAC+TGG - chr3_1:81977301-81977320 None:intergenic 25.0%
AAACGATACAATCATTCGTA+AGG + chr3_1:81976135-81976154 Msa0380300:CDS 30.0%
TCAACAACAACAGATTATGA+AGG + chr3_1:81976298-81976317 Msa0380300:intron 30.0%
! CATCTTTTACTATCTTGTTC+AGG + chr3_1:81976466-81976485 Msa0380300:CDS 30.0%
TAACTCAAATTAAACTGACC+TGG + chr3_1:81976560-81976579 Msa0380300:intron 30.0%
AATGATATATGTAAGTTGCC+AGG - chr3_1:81976581-81976600 None:intergenic 30.0%
ACAAAATGACAACACATCAT+GGG - chr3_1:81976768-81976787 None:intergenic 30.0%
AACAAAATGACAACACATCA+TGG - chr3_1:81976769-81976788 None:intergenic 30.0%
!!! TGCTTGTATTTTTTAGCCTT+TGG + chr3_1:81976790-81976809 Msa0380300:intron 30.0%
!!! GCTTGTATTTTTTAGCCTTT+GGG + chr3_1:81976791-81976810 Msa0380300:intron 30.0%
TCAAACTTCATTAGCTAAAG+GGG - chr3_1:81977128-81977147 None:intergenic 30.0%
AAAGGTTATCCATTCAAATC+AGG - chr3_1:81977178-81977197 None:intergenic 30.0%
!!! GGATTTTAAAATCAAGCTCT+TGG + chr3_1:81977384-81977403 Msa0380300:three_prime_UTR 30.0%
AAACGATACAATCATTCGTA+AGG + chr3_1:81976135-81976154 Msa0380300:CDS 30.0%
TCAACAACAACAGATTATGA+AGG + chr3_1:81976298-81976317 Msa0380300:intron 30.0%
! CATCTTTTACTATCTTGTTC+AGG + chr3_1:81976466-81976485 Msa0380300:CDS 30.0%
TAACTCAAATTAAACTGACC+TGG + chr3_1:81976560-81976579 Msa0380300:intron 30.0%
AATGATATATGTAAGTTGCC+AGG - chr3_1:81976581-81976600 None:intergenic 30.0%
ACAAAATGACAACACATCAT+GGG - chr3_1:81976768-81976787 None:intergenic 30.0%
AACAAAATGACAACACATCA+TGG - chr3_1:81976769-81976788 None:intergenic 30.0%
!!! TGCTTGTATTTTTTAGCCTT+TGG + chr3_1:81976790-81976809 Msa0380300:intron 30.0%
!!! GCTTGTATTTTTTAGCCTTT+GGG + chr3_1:81976791-81976810 Msa0380300:intron 30.0%
TCAAACTTCATTAGCTAAAG+GGG - chr3_1:81977128-81977147 None:intergenic 30.0%
AAAGGTTATCCATTCAAATC+AGG - chr3_1:81977178-81977197 None:intergenic 30.0%
!!! GGATTTTAAAATCAAGCTCT+TGG + chr3_1:81977384-81977403 Msa0380300:three_prime_UTR 30.0%
!! CTCTTTTTCTTGTTCGAGTT+GGG - chr3_1:81975884-81975903 None:intergenic 35.0%
! TCTCTTTTTCTTGTTCGAGT+TGG - chr3_1:81975885-81975904 None:intergenic 35.0%
TTATTGTTGGATCAGTAGGA+TGG + chr3_1:81975979-81975998 Msa0380300:exon 35.0%
TATTGTTGGATCAGTAGGAT+GGG + chr3_1:81975980-81975999 Msa0380300:exon 35.0%
TTCTACTTGAGATACTACGT+TGG + chr3_1:81976025-81976044 Msa0380300:CDS 35.0%
AGATACTACGTTGGTCATAA+GGG + chr3_1:81976034-81976053 Msa0380300:CDS 35.0%
GTTGGTCATAAGGGTAAATT+CGG + chr3_1:81976043-81976062 Msa0380300:CDS 35.0%
ACAACAACAGATTATGAAGG+AGG + chr3_1:81976301-81976320 Msa0380300:intron 35.0%
TCAGGAACTTGAGATTGTTA+TGG + chr3_1:81976361-81976380 Msa0380300:CDS 35.0%
CAGGAACTTGAGATTGTTAT+GGG + chr3_1:81976362-81976381 Msa0380300:CDS 35.0%
AGGAACTTGAGATTGTTATG+GGG + chr3_1:81976363-81976382 Msa0380300:CDS 35.0%
TCCTTTACTACTTCCAAGAT+TGG + chr3_1:81976398-81976417 Msa0380300:CDS 35.0%
ACCAATCTTGGAAGTAGTAA+AGG - chr3_1:81976402-81976421 None:intergenic 35.0%
ATCAACAAGAGAACCAATCT+TGG - chr3_1:81976414-81976433 None:intergenic 35.0%
CAAGATAGTAAAAGATGCGA+AGG - chr3_1:81976463-81976482 None:intergenic 35.0%
! TATCTGTGCTTAAGCAGTTT+TGG - chr3_1:81976524-81976543 None:intergenic 35.0%
! TTTACTGTATTTCTGCAGAG+TGG + chr3_1:81976730-81976749 Msa0380300:intron 35.0%
AAAATGACAACACATCATGG+GGG - chr3_1:81976766-81976785 None:intergenic 35.0%
CAAAATGACAACACATCATG+GGG - chr3_1:81976767-81976786 None:intergenic 35.0%
!!! TTTTTTAGCCTTTGGGATCA+TGG + chr3_1:81976798-81976817 Msa0380300:intron 35.0%
AGTGGAAAAAATCACAGCAA+AGG - chr3_1:81976826-81976845 None:intergenic 35.0%
ATCATAGGGGAATAACTAAG+TGG - chr3_1:81976844-81976863 None:intergenic 35.0%
TCTTGTATTGGGTGACTAAT+GGG - chr3_1:81976925-81976944 None:intergenic 35.0%
ATCTTGTATTGGGTGACTAA+TGG - chr3_1:81976926-81976945 None:intergenic 35.0%
AATTAGCAGGAATGAACCAA+AGG - chr3_1:81976969-81976988 None:intergenic 35.0%
!! TAGTTTCGAGTTTGTCTTCT+TGG + chr3_1:81977077-81977096 Msa0380300:three_prime_UTR 35.0%
! AATATGTATCGGTGATGAAC+AGG + chr3_1:81977148-81977167 Msa0380300:three_prime_UTR 35.0%
! ACAGGAAAACCTGATTTGAA+TGG + chr3_1:81977166-81977185 Msa0380300:three_prime_UTR 35.0%
AAAGCAAAGATCTGGTACAA+AGG - chr3_1:81977196-81977215 None:intergenic 35.0%
TCTACTCCCTAATATTAACC+TGG + chr3_1:81977338-81977357 Msa0380300:three_prime_UTR 35.0%
GTGGAACCAGGTTAATATTA+GGG - chr3_1:81977347-81977366 None:intergenic 35.0%
AATCCATGTCATCAATCATG+TGG - chr3_1:81977369-81977388 None:intergenic 35.0%
!! CTCTTTTTCTTGTTCGAGTT+GGG - chr3_1:81975884-81975903 None:intergenic 35.0%
! TCTCTTTTTCTTGTTCGAGT+TGG - chr3_1:81975885-81975904 None:intergenic 35.0%
TTATTGTTGGATCAGTAGGA+TGG + chr3_1:81975979-81975998 Msa0380300:exon 35.0%
TATTGTTGGATCAGTAGGAT+GGG + chr3_1:81975980-81975999 Msa0380300:exon 35.0%
TTCTACTTGAGATACTACGT+TGG + chr3_1:81976025-81976044 Msa0380300:CDS 35.0%
AGATACTACGTTGGTCATAA+GGG + chr3_1:81976034-81976053 Msa0380300:CDS 35.0%
GTTGGTCATAAGGGTAAATT+CGG + chr3_1:81976043-81976062 Msa0380300:CDS 35.0%
ACAACAACAGATTATGAAGG+AGG + chr3_1:81976301-81976320 Msa0380300:intron 35.0%
TCAGGAACTTGAGATTGTTA+TGG + chr3_1:81976361-81976380 Msa0380300:CDS 35.0%
CAGGAACTTGAGATTGTTAT+GGG + chr3_1:81976362-81976381 Msa0380300:CDS 35.0%
AGGAACTTGAGATTGTTATG+GGG + chr3_1:81976363-81976382 Msa0380300:CDS 35.0%
TCCTTTACTACTTCCAAGAT+TGG + chr3_1:81976398-81976417 Msa0380300:CDS 35.0%
ACCAATCTTGGAAGTAGTAA+AGG - chr3_1:81976402-81976421 None:intergenic 35.0%
ATCAACAAGAGAACCAATCT+TGG - chr3_1:81976414-81976433 None:intergenic 35.0%
CAAGATAGTAAAAGATGCGA+AGG - chr3_1:81976463-81976482 None:intergenic 35.0%
! TATCTGTGCTTAAGCAGTTT+TGG - chr3_1:81976524-81976543 None:intergenic 35.0%
! TTTACTGTATTTCTGCAGAG+TGG + chr3_1:81976730-81976749 Msa0380300:intron 35.0%
AAAATGACAACACATCATGG+GGG - chr3_1:81976766-81976785 None:intergenic 35.0%
CAAAATGACAACACATCATG+GGG - chr3_1:81976767-81976786 None:intergenic 35.0%
!!! TTTTTTAGCCTTTGGGATCA+TGG + chr3_1:81976798-81976817 Msa0380300:intron 35.0%
AGTGGAAAAAATCACAGCAA+AGG - chr3_1:81976826-81976845 None:intergenic 35.0%
ATCATAGGGGAATAACTAAG+TGG - chr3_1:81976844-81976863 None:intergenic 35.0%
TCTTGTATTGGGTGACTAAT+GGG - chr3_1:81976925-81976944 None:intergenic 35.0%
ATCTTGTATTGGGTGACTAA+TGG - chr3_1:81976926-81976945 None:intergenic 35.0%
AATTAGCAGGAATGAACCAA+AGG - chr3_1:81976969-81976988 None:intergenic 35.0%
!! TAGTTTCGAGTTTGTCTTCT+TGG + chr3_1:81977077-81977096 Msa0380300:three_prime_UTR 35.0%
! AATATGTATCGGTGATGAAC+AGG + chr3_1:81977148-81977167 Msa0380300:three_prime_UTR 35.0%
! ACAGGAAAACCTGATTTGAA+TGG + chr3_1:81977166-81977185 Msa0380300:three_prime_UTR 35.0%
AAAGCAAAGATCTGGTACAA+AGG - chr3_1:81977196-81977215 None:intergenic 35.0%
TCTACTCCCTAATATTAACC+TGG + chr3_1:81977338-81977357 Msa0380300:three_prime_UTR 35.0%
GTGGAACCAGGTTAATATTA+GGG - chr3_1:81977347-81977366 None:intergenic 35.0%
AATCCATGTCATCAATCATG+TGG - chr3_1:81977369-81977388 None:intergenic 35.0%
CTCGCAGTCATATTAAACTC+TGG + chr3_1:81975928-81975947 Msa0380300:five_prime_UTR 40.0%
GCAGTCATATTAAACTCTGG+TGG + chr3_1:81975931-81975950 Msa0380300:five_prime_UTR 40.0%
TATTAAACTCTGGTGGTTGC+TGG + chr3_1:81975938-81975957 Msa0380300:five_prime_UTR 40.0%
GAGATACTACGTTGGTCATA+AGG + chr3_1:81976033-81976052 Msa0380300:CDS 40.0%
CGATACAATCATTCGTAAGG+AGG + chr3_1:81976138-81976157 Msa0380300:CDS 40.0%
!! TCGTATTATTTCTGACAGCG+AGG + chr3_1:81976195-81976214 Msa0380300:CDS 40.0%
TGAAGGAGGATGATAACAAC+TGG + chr3_1:81976315-81976334 Msa0380300:CDS 40.0%
TGTGAATTTAGGCATGGTGA+TGG - chr3_1:81976605-81976624 None:intergenic 40.0%
TTGATGTCAGCTTATGCCTT+TGG + chr3_1:81976950-81976969 Msa0380300:intron 40.0%
CTTTCACTTGCTTCCATTGT+TGG + chr3_1:81977245-81977264 Msa0380300:three_prime_UTR 40.0%
GGTGGAACCAGGTTAATATT+AGG - chr3_1:81977348-81977367 None:intergenic 40.0%
CTCGCAGTCATATTAAACTC+TGG + chr3_1:81975928-81975947 Msa0380300:five_prime_UTR 40.0%
GCAGTCATATTAAACTCTGG+TGG + chr3_1:81975931-81975950 Msa0380300:five_prime_UTR 40.0%
TATTAAACTCTGGTGGTTGC+TGG + chr3_1:81975938-81975957 Msa0380300:five_prime_UTR 40.0%
GAGATACTACGTTGGTCATA+AGG + chr3_1:81976033-81976052 Msa0380300:CDS 40.0%
CGATACAATCATTCGTAAGG+AGG + chr3_1:81976138-81976157 Msa0380300:CDS 40.0%
!! TCGTATTATTTCTGACAGCG+AGG + chr3_1:81976195-81976214 Msa0380300:CDS 40.0%
TGAAGGAGGATGATAACAAC+TGG + chr3_1:81976315-81976334 Msa0380300:CDS 40.0%
TGTGAATTTAGGCATGGTGA+TGG - chr3_1:81976605-81976624 None:intergenic 40.0%
TTGATGTCAGCTTATGCCTT+TGG + chr3_1:81976950-81976969 Msa0380300:intron 40.0%
CTTTCACTTGCTTCCATTGT+TGG + chr3_1:81977245-81977264 Msa0380300:three_prime_UTR 40.0%
GGTGGAACCAGGTTAATATT+AGG - chr3_1:81977348-81977367 None:intergenic 40.0%
! GTTGCTGGTTGAGAATCGAT+CGG + chr3_1:81975953-81975972 Msa0380300:five_prime_UTR 45.0%
AATCGATCGGCGGTTATTGT+TGG + chr3_1:81975966-81975985 Msa0380300:five_prime_UTR 45.0%
GCGGTTATTGTTGGATCAGT+AGG + chr3_1:81975975-81975994 Msa0380300:five_prime_UTR 45.0%
AACGAAGCTTACCATCTGGA+CGG - chr3_1:81976093-81976112 None:intergenic 45.0%
GCATAACGAAGCTTACCATC+TGG - chr3_1:81976097-81976116 None:intergenic 45.0%
GGAAAAGGGGGGTGAAATTA+GGG - chr3_1:81976252-81976271 None:intergenic 45.0%
AGGAAAAGGGGGGTGAAATT+AGG - chr3_1:81976253-81976272 None:intergenic 45.0%
TAAAAGATGCGAAGGCCTTC+AGG - chr3_1:81976455-81976474 None:intergenic 45.0%
CAAAGGAACCATGATCCCAA+AGG - chr3_1:81976809-81976828 None:intergenic 45.0%
! ATCAATCATGTGGTGGAACC+AGG - chr3_1:81977359-81977378 None:intergenic 45.0%
CCATGTCATCAATCATGTGG+TGG - chr3_1:81977366-81977385 None:intergenic 45.0%
! CCACCACATGATTGATGACA+TGG + chr3_1:81977363-81977382 Msa0380300:three_prime_UTR 45.0%
! GTTGCTGGTTGAGAATCGAT+CGG + chr3_1:81975953-81975972 Msa0380300:five_prime_UTR 45.0%
AATCGATCGGCGGTTATTGT+TGG + chr3_1:81975966-81975985 Msa0380300:five_prime_UTR 45.0%
GCGGTTATTGTTGGATCAGT+AGG + chr3_1:81975975-81975994 Msa0380300:five_prime_UTR 45.0%
AACGAAGCTTACCATCTGGA+CGG - chr3_1:81976093-81976112 None:intergenic 45.0%
GCATAACGAAGCTTACCATC+TGG - chr3_1:81976097-81976116 None:intergenic 45.0%
GGAAAAGGGGGGTGAAATTA+GGG - chr3_1:81976252-81976271 None:intergenic 45.0%
AGGAAAAGGGGGGTGAAATT+AGG - chr3_1:81976253-81976272 None:intergenic 45.0%
TAAAAGATGCGAAGGCCTTC+AGG - chr3_1:81976455-81976474 None:intergenic 45.0%
CAAAGGAACCATGATCCCAA+AGG - chr3_1:81976809-81976828 None:intergenic 45.0%
! ATCAATCATGTGGTGGAACC+AGG - chr3_1:81977359-81977378 None:intergenic 45.0%
CCATGTCATCAATCATGTGG+TGG - chr3_1:81977366-81977385 None:intergenic 45.0%
! CCACCACATGATTGATGACA+TGG + chr3_1:81977363-81977382 Msa0380300:three_prime_UTR 45.0%
! GAGTTTGAGTTCCGTCCAGA+TGG + chr3_1:81976079-81976098 Msa0380300:CDS 50.0%
GGGGGGTGAAATTAGGGTTA+GGG - chr3_1:81976246-81976265 None:intergenic 50.0%
AGGGGGGTGAAATTAGGGTT+AGG - chr3_1:81976247-81976266 None:intergenic 50.0%
CAAGTTCCTGACGACCAACA+CGG - chr3_1:81976352-81976371 None:intergenic 50.0%
!! CAAAGCAGTGCTGATCCTGA+AGG + chr3_1:81976437-81976456 Msa0380300:CDS 50.0%
! GTATTGGGTGACTAATGGGC+AGG - chr3_1:81976921-81976940 None:intergenic 50.0%
CAGACAGCATGCTCCAACAA+TGG - chr3_1:81977261-81977280 None:intergenic 50.0%
GTTGGAGCATGCTGTCTGTA+TGG + chr3_1:81977263-81977282 Msa0380300:three_prime_UTR 50.0%
! GAGTTTGAGTTCCGTCCAGA+TGG + chr3_1:81976079-81976098 Msa0380300:CDS 50.0%
GGGGGGTGAAATTAGGGTTA+GGG - chr3_1:81976246-81976265 None:intergenic 50.0%
AGGGGGGTGAAATTAGGGTT+AGG - chr3_1:81976247-81976266 None:intergenic 50.0%
CAAGTTCCTGACGACCAACA+CGG - chr3_1:81976352-81976371 None:intergenic 50.0%
!! CAAAGCAGTGCTGATCCTGA+AGG + chr3_1:81976437-81976456 Msa0380300:CDS 50.0%
! GTATTGGGTGACTAATGGGC+AGG - chr3_1:81976921-81976940 None:intergenic 50.0%
CAGACAGCATGCTCCAACAA+TGG - chr3_1:81977261-81977280 None:intergenic 50.0%
GTTGGAGCATGCTGTCTGTA+TGG + chr3_1:81977263-81977282 Msa0380300:three_prime_UTR 50.0%
GCTGGTTGAGAATCGATCGG+CGG + chr3_1:81975956-81975975 Msa0380300:five_prime_UTR 55.0%
CGACACTCACGAAGAACAGC+AGG - chr3_1:81976175-81976194 None:intergenic 55.0%
GCTGGTTGAGAATCGATCGG+CGG + chr3_1:81975956-81975975 Msa0380300:five_prime_UTR 55.0%
CGACACTCACGAAGAACAGC+AGG - chr3_1:81976175-81976194 None:intergenic 55.0%
AAGAAGCGGGCCTGGTGGAA+AGG + chr3_1:81975858-81975877 Msa0380300:five_prime_UTR 60.0%
!! TCGAGTTGGGCCTTTCCACC+AGG - chr3_1:81975871-81975890 None:intergenic 60.0%
TGGCCTGAACCAGACCGTGT+TGG + chr3_1:81976335-81976354 Msa0380300:CDS 60.0%
! CGACCAACACGGTCTGGTTC+AGG - chr3_1:81976341-81976360 None:intergenic 60.0%
! ACCAGACCGTGTTGGTCGTC+AGG + chr3_1:81976343-81976362 Msa0380300:CDS 60.0%
TCCTGACGACCAACACGGTC+TGG - chr3_1:81976347-81976366 None:intergenic 60.0%
! TGGGTGACTAATGGGCAGGC+AGG - chr3_1:81976917-81976936 None:intergenic 60.0%
AAGAAGCGGGCCTGGTGGAA+AGG + chr3_1:81975858-81975877 Msa0380300:five_prime_UTR 60.0%
!! TCGAGTTGGGCCTTTCCACC+AGG - chr3_1:81975871-81975890 None:intergenic 60.0%
TGGCCTGAACCAGACCGTGT+TGG + chr3_1:81976335-81976354 Msa0380300:CDS 60.0%
! CGACCAACACGGTCTGGTTC+AGG - chr3_1:81976341-81976360 None:intergenic 60.0%
! ACCAGACCGTGTTGGTCGTC+AGG + chr3_1:81976343-81976362 Msa0380300:CDS 60.0%
TCCTGACGACCAACACGGTC+TGG - chr3_1:81976347-81976366 None:intergenic 60.0%
! TGGGTGACTAATGGGCAGGC+AGG - chr3_1:81976917-81976936 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 81975855 81977410 81975855 ID=Msa0380300;Name=Msa0380300
chr3_1 mRNA 81975855 81977410 81975855 ID=Msa0380300-mRNA-1;Parent=Msa0380300;Name=Msa0380300-mRNA-1;_AED=0.05;_eAED=0.05;_QI=143|1|1|1|1|1|3|346|151
chr3_1 exon 81975855 81976216 81975855 ID=Msa0380300-mRNA-1:exon:20839;Parent=Msa0380300-mRNA-1
chr3_1 exon 81976311 81976487 81976311 ID=Msa0380300-mRNA-1:exon:20840;Parent=Msa0380300-mRNA-1
chr3_1 exon 81977005 81977410 81977005 ID=Msa0380300-mRNA-1:exon:20841;Parent=Msa0380300-mRNA-1
chr3_1 five_prime_UTR 81975855 81975997 81975855 ID=Msa0380300-mRNA-1:five_prime_utr;Parent=Msa0380300-mRNA-1
chr3_1 CDS 81975998 81976216 81975998 ID=Msa0380300-mRNA-1:cds;Parent=Msa0380300-mRNA-1
chr3_1 CDS 81976311 81976487 81976311 ID=Msa0380300-mRNA-1:cds;Parent=Msa0380300-mRNA-1
chr3_1 CDS 81977005 81977064 81977005 ID=Msa0380300-mRNA-1:cds;Parent=Msa0380300-mRNA-1
chr3_1 three_prime_UTR 81977065 81977410 81977065 ID=Msa0380300-mRNA-1:three_prime_utr;Parent=Msa0380300-mRNA-1
Gene Sequence

>Msa0380300

ATGGGAAGCGAAGAAGAGAATGCAGAGTTCTACTTGAGATACTACGTTGGTCATAAGGGTAAATTCGGACATGAATTTTTGGAGTTTGAGTTCCGTCCAGATGGTAAGCTTCGTTATGCTAACAATTCCAATTACAAAAACGATACAATCATTCGTAAGGAGGTTTATCTTACTCCTGCTGTTCTTCGTGAGTGTCGTCGTATTATTTCTGACAGCGAGATTATGAAGGAGGATGATAACAACTGGCCTGAACCAGACCGTGTTGGTCGTCAGGAACTTGAGATTGTTATGGGGAATGAGCATATCTCCTTTACTACTTCCAAGATTGGTTCTCTTGTTGATGTTCAAAGCAGTGCTGATCCTGAAGGCCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATATAA

Protein sequence

>Msa0380300

MGSEEENAEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIISDSEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI*