AlfalfaGEDB | Msa0237410

M. sativa cultivar zhongmu-4 / Msa0237410

KEGG: K14490
GO: GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564
PFAM: PF01627.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237410	XP_003594049.2	99.346	153	1	0	1	153	1	153	5.11e-107	311

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237410	sp\|Q9ZNV9\|AHP1_ARATH	70.588	153	45	0	1	153	1	153	6.89e-70	210

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237410	B7FGU6	99.346	153	1	0	1	153	1	153	2.44e-107	311

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0237410	0.841764	3.897773e-58	-8.615850e-47
Msa0002490	Msa0237410	0.830808	2.383465e-55	-8.615850e-47
Msa0003700	Msa0237410	0.837326	5.552681e-57	-8.615850e-47
Msa0008090	Msa0237410	0.857325	1.762820e-62	-8.615850e-47
Msa0008410	Msa0237410	0.830820	2.368175e-55	-8.615850e-47
Msa0009760	Msa0237410	0.813536	2.435505e-51	-8.615850e-47
Msa0015120	Msa0237410	0.801260	9.791269e-49	-8.615850e-47
Msa0016670	Msa0237410	0.802757	4.820972e-49	-8.615850e-47
Msa0017510	Msa0237410	0.810978	8.806834e-51	-8.615850e-47
Msa0020930	Msa0237410	0.811410	7.099005e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237410	MtrunA17_Chr2g0286781	99.346	153	1	0	1	153	1	153	4.70e-111	311
Msa0237410	MtrunA17_Chr1g0191351	56.835	139	60	0	5	143	6	144	8.57e-60	182
Msa0237410	MtrunA17_Chr7g0273321	60.993	141	54	1	9	148	6	146	3.38e-59	180
Msa0237410	MtrunA17_Chr1g0196361	55.944	143	63	0	5	147	3	145	8.38e-57	174
Msa0237410	MtrunA17_Chr2g0331011	42.446	139	80	0	1	139	1	139	4.09e-39	129
Msa0237410	MtrunA17_Chr2g0331021	42.446	139	80	0	1	139	1	139	7.45e-39	129
Msa0237410	MtrunA17_Chr2g0333131	46.207	145	73	3	10	149	10	154	1.41e-31	110
Msa0237410	MtrunA17_Chr4g0003251	43.478	115	63	2	37	149	28	142	5.94e-28	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237410	AT3G21510.1	70.588	153	45	0	1	153	1	153	7.01e-71	210
Msa0237410	AT1G03430.1	52.632	152	71	1	3	153	6	157	8.12e-56	172
Msa0237410	AT5G39340.1	50.331	151	74	1	3	152	5	155	3.90e-51	160
Msa0237410	AT3G29350.1	48.026	152	78	1	3	153	5	156	4.85e-51	160
Msa0237410	AT5G39340.4	50.331	151	74	1	3	152	38	188	1.49e-50	160
Msa0237410	AT5G39340.2	50.331	151	74	1	3	152	54	204	3.35e-50	160
Msa0237410	AT5G39340.3	50.331	151	74	1	3	152	54	204	3.35e-50	160
Msa0237410	AT1G03430.2	51.852	135	64	1	3	136	6	140	1.89e-46	149
Msa0237410	AT3G16360.2	44.030	134	75	0	6	139	1	134	8.97e-39	129
Msa0237410	AT3G16360.1	45.000	120	66	0	19	138	8	127	1.07e-36	123

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Find 68 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCAAACATTCACAAG+AGG	0.592112	2_2:+10571607	None:intergenic
AACAATATTTGGCCAGATTC+TGG	0.210683	2_2:+10571314	None:intergenic
AACAGGTCATCACAGTACAC+AGG	0.614406	2_2:+10573372	None:intergenic
ACAGGTCATCACAGTACACA+GGG	0.667052	2_2:+10573373	None:intergenic
ACAGTACACAGGGCTCGCGT+GGG	0.658073	2_2:+10573383	None:intergenic
ACATGGAGGTGGGTCAGATG+CGG	0.639294	2_2:-10573026	Msa0237410:CDS
ACTCAGTTCAGTTCCATCAT+AGG	0.355461	2_2:+10571697	None:intergenic
AGAACTGCGAAATTGAAGGT+TGG	0.584521	2_2:+10573200	None:intergenic
AGTTATGGTAATCCGGAGTT+TGG	0.380082	2_2:-10571337	Msa0237410:three_prime_UTR
AGTTTAAGGGTAGCAGTGCA+AGG	0.619461	2_2:-10572371	Msa0237410:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAGTTATTTGTAGGAAGT+AGG	+	chr2_2:10571232-10571251	None:intergenic	30.0%
TTTCTCTCTCTTTGTGATAT+TGG	+	chr2_2:10571291-10571310	None:intergenic	30.0%
AAGTATAACCAAGAATTGGT+TGG	+	chr2_2:10572004-10572023	None:intergenic	30.0%
AGACATGATCTAATGTTGTT+GGG	-	chr2_2:10572095-10572114	Msa0237410:intron	30.0%
GCTACAGAATCTGAATAAAT+CGG	-	chr2_2:10572241-10572260	Msa0237410:intron	30.0%
ATAAGCTTGAAACATTGTTG+AGG	-	chr2_2:10572700-10572719	Msa0237410:intron	30.0%
TAAGCTTGAAACATTGTTGA+GGG	-	chr2_2:10572701-10572720	Msa0237410:intron	30.0%
AAAATCCAAACATTCACAAG+AGG	+	chr2_2:10572947-10572966	None:intergenic	30.0%
TTGTGAAGAACAAAGTACAT+TGG	+	chr2_2:10572991-10573010	None:intergenic	30.0%
ATCAGTTATTTGTAGGAAGT+AGG	+	chr2_2:10571232-10571251	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	10571168	10573405	10571168	ID=Msa0237410;Name=Msa0237410
chr2_2	mRNA	10571168	10573405	10571168	ID=Msa0237410-mRNA-1;Parent=Msa0237410;Name=Msa0237410-mRNA-1;_AED=0.04;_eAED=0.04;_QI=224\|1\|1\|1\|0.83\|0.71\|7\|531\|153
chr2_2	exon	10571168	10571755	10571168	ID=Msa0237410-mRNA-1:exon:4609;Parent=Msa0237410-mRNA-1
chr2_2	exon	10571851	10571923	10571851	ID=Msa0237410-mRNA-1:exon:4608;Parent=Msa0237410-mRNA-1
chr2_2	exon	10572108	10572179	10572108	ID=Msa0237410-mRNA-1:exon:4607;Parent=Msa0237410-mRNA-1
chr2_2	exon	10572372	10572440	10572372	ID=Msa0237410-mRNA-1:exon:4606;Parent=Msa0237410-mRNA-1
chr2_2	exon	10572716	10572846	10572716	ID=Msa0237410-mRNA-1:exon:4605;Parent=Msa0237410-mRNA-1
chr2_2	exon	10572987	10573052	10572987	ID=Msa0237410-mRNA-1:exon:4604;Parent=Msa0237410-mRNA-1
chr2_2	exon	10573188	10573405	10573188	ID=Msa0237410-mRNA-1:exon:4603;Parent=Msa0237410-mRNA-1
chr2_2	five_prime_UTR	10573188	10573405	10573188	ID=Msa0237410-mRNA-1:five_prime_utr;Parent=Msa0237410-mRNA-1
chr2_2	five_prime_UTR	10573047	10573052	10573047	ID=Msa0237410-mRNA-1:five_prime_utr;Parent=Msa0237410-mRNA-1
chr2_2	CDS	10572987	10573046	10572987	ID=Msa0237410-mRNA-1:cds;Parent=Msa0237410-mRNA-1
chr2_2	CDS	10572716	10572846	10572716	ID=Msa0237410-mRNA-1:cds;Parent=Msa0237410-mRNA-1
chr2_2	CDS	10572372	10572440	10572372	ID=Msa0237410-mRNA-1:cds;Parent=Msa0237410-mRNA-1
chr2_2	CDS	10572108	10572179	10572108	ID=Msa0237410-mRNA-1:cds;Parent=Msa0237410-mRNA-1
chr2_2	CDS	10571851	10571923	10571851	ID=Msa0237410-mRNA-1:cds;Parent=Msa0237410-mRNA-1
chr2_2	CDS	10571699	10571755	10571699	ID=Msa0237410-mRNA-1:cds;Parent=Msa0237410-mRNA-1
chr2_2	three_prime_UTR	10571168	10571698	10571168	ID=Msa0237410-mRNA-1:three_prime_utr;Parent=Msa0237410-mRNA-1

Gene Sequence

>Msa0237410

ATGGAGGTGGGTCAGATGCGGAGACAGTGGGTGGACTACATCAAATCCATGTTCATGGAGGGTTTCTTGGATGGCCAGTTTCTCCAACTTCAGCAGCTACAAGATGAGAACAATCCTGAATTTGTTTTTGAAGTTGTTTCTCTTTTCTTTGATGATTCTGAGAGGATTCTCAAAGATCTGTCTTTTGCTGTGGATCAGCAAAGTGTTGACTTCAAAAAAGTTGATGCACATGTTCACCAGTTTAAGGGTAGCAGTGCAAGCATAGGCGCACAAAGGGTGAAAAATTCCTGCGTTGCTTTTCGCAATTTCTGTGAAGAACAAAACATAGATGCGTGCCGCAGGTGTTTGCAGCAAGTGAAGCAAGAGTACTTACTTGTCAAGAATAAGCTTGAAACATTGTTGAGGCTTGAGCAGCAGATAGTGGCAGCTGGTGGCTCAATCCCTATGATGGAACTGAACTGA

Protein sequence

>Msa0237410

MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSVDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAAGGSIPMMELN*