AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0763070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763070 MtrunA17_Chr5g0413401 100.000 71 0 0 1 71 1 71 6.25e-50 150
Msa0763070 MtrunA17_Chr4g0038621 97.183 71 2 0 1 71 1 71 3.48e-48 146
Msa0763070 MtrunA17_Chr5g0413391 77.966 59 13 0 13 71 38 96 6.75e-31 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763070 AT1G61700.1 88.732 71 8 0 1 71 1 71 1.43e-44 137
Msa0763070 AT1G11475.1 89.855 69 7 0 1 69 1 69 1.27e-42 132

Find 39 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCCTTAAGACTCCTTAAT+TGG 0.218662 5_2:+21743534 None:intergenic
AAGGGATAATCAAATCATTT+TGG 0.226726 5_2:-21743220 Msa0763070:three_prime_UTR
AGAGATGCACTGGATGCTTT+GGG 0.274653 5_2:-21743739 Msa0763070:CDS
TGCTTGCTAGAACAATTTAA+AGG 0.276326 5_2:+21743436 None:intergenic
GAAAAGCATGAAGCCAATTA+AGG 0.319569 5_2:-21743547 Msa0763070:exon
TAGAGATGCACTGGATGCTT+TGG 0.336585 5_2:-21743740 Msa0763070:CDS
CAAAATCGTTATTTAGCGTT+TGG 0.346017 5_2:+21746907 None:intergenic
GTTTCTTCTAATTAGGTCAT+TGG 0.370379 5_2:-21746674 Msa0763070:intron
ATTAGGTCATTGGAAACAAA+TGG 0.383611 5_2:-21746664 Msa0763070:intron
AGCACGCAACTGACACATTT+CGG 0.399196 5_2:+21743502 None:intergenic
CTAGAACAATTTAAAGGAAA+AGG 0.409796 5_2:+21743442 None:intergenic
GCATACGCCTGCAGCAATAT+CGG 0.413628 5_2:+21743710 None:intergenic
AATTCAGTAGCTTCTCGATA+AGG 0.428935 5_2:+21743671 None:intergenic
CCGCAGGTGAAACAACGAAC+TGG 0.441163 5_2:+21746834 None:intergenic
AAGCCAATTAAGGAGTCTTA+AGG 0.448688 5_2:-21743537 Msa0763070:exon
CAGAATTTATACTAATGCTT+AGG 0.464414 5_2:-21743323 Msa0763070:three_prime_UTR
GGTTGGTCCGATATTGCTGC+AGG 0.484942 5_2:-21743717 Msa0763070:CDS
CTTCAAGCTGATTACACTGA+AGG 0.490470 5_2:-21746623 Msa0763070:CDS
TGCACTGGATGCTTTGGGGT+TGG 0.493715 5_2:-21743734 Msa0763070:CDS
TTAGGTCATTGGAAACAAAT+GGG 0.513383 5_2:-21746663 Msa0763070:intron
CGCAGGTGAAACAACGAACT+GGG 0.523249 5_2:+21746835 None:intergenic
TTCAAGCTGATTACACTGAA+GGG 0.534819 5_2:-21746622 Msa0763070:intron
AGACAAAACTGTAGAATGAC+AGG 0.542212 5_2:-21743378 Msa0763070:three_prime_UTR
AAGATTAGAAACCTTTCCGC+AGG 0.548491 5_2:+21746818 None:intergenic
AATGTGTGTAGTGATAACTA+AGG 0.554664 5_2:-21743239 Msa0763070:three_prime_UTR
TAAAATTGACATGTGGCCAC+AGG 0.570748 5_2:+21743476 None:intergenic
TGTTAAAACATAACATGCAA+AGG 0.574632 5_2:+21743290 None:intergenic
TCGTTGTTTCACCTGCGGAA+AGG 0.581187 5_2:-21746829 Msa0763070:intron
ATGTGTGTAGTGATAACTAA+GGG 0.584476 5_2:-21743238 Msa0763070:three_prime_UTR
TGACTAACAATATAAACACT+TGG 0.597197 5_2:+21743170 None:intergenic
GAGATGCACTGGATGCTTTG+GGG 0.600948 5_2:-21743738 Msa0763070:CDS
GAAAGGTTTCTACTGTTGTG+CGG 0.601466 5_2:-21746885 Msa0763070:five_prime_UTR
CCAGTTCGTTGTTTCACCTG+CGG 0.606400 5_2:-21746834 Msa0763070:CDS
GCTTCTCGATAAGGTCAACA+TGG 0.614974 5_2:+21743680 None:intergenic
GTAAATAATCCCATAACCAG+AGG 0.642019 5_2:+21743197 None:intergenic
TGTGCGGCGTGAGCAGAGAG+AGG 0.655710 5_2:-21746869 Msa0763070:five_prime_UTR
AATCAGCTTGAAGAAAGTCA+AGG 0.662224 5_2:+21746633 None:intergenic
TCAGTTGCGTGCTAGTCCTG+TGG 0.669432 5_2:-21743492 Msa0763070:three_prime_UTR
CTTCTCGATAAGGTCAACAT+GGG 0.682743 5_2:+21743681 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACAACTTTTTTTTTTT+AGG - chr5_2:21743868-21743887 Msa0763070:intron 10.0%
!! GTATTTATTATTTAACATAA+TGG - chr5_2:21746319-21746338 Msa0763070:intron 10.0%
!!! TTTTAACGATTTTGAAATTT+AGG - chr5_2:21743365-21743384 Msa0763070:three_prime_UTR 15.0%
!!! TTTAACGATTTTGAAATTTA+GGG - chr5_2:21743366-21743385 Msa0763070:three_prime_UTR 15.0%
!! GATAACAAAAAAAAAATTGT+CGG - chr5_2:21744384-21744403 Msa0763070:intron 15.0%
!! ATAACAAAAAAAAAATTGTC+GGG - chr5_2:21744385-21744404 Msa0763070:intron 15.0%
!! GATTTAATTATAGGAATTAT+GGG + chr5_2:21745081-21745100 None:intergenic 15.0%
!! TGATTTAATTATAGGAATTA+TGG + chr5_2:21745082-21745101 None:intergenic 15.0%
!! ACTGTTAATGATTTAATTAT+AGG + chr5_2:21745090-21745109 None:intergenic 15.0%
!! ACAAATTTAGTAAAAGATAA+TGG + chr5_2:21745556-21745575 None:intergenic 15.0%
!!! TATTACAAAATGCAATTTTA+AGG + chr5_2:21745668-21745687 None:intergenic 15.0%
!!! ATCTTTTCTTTAGTTTAATA+TGG - chr5_2:21745885-21745904 Msa0763070:intron 15.0%
!! TTTATTATTTAACATAATGG+TGG - chr5_2:21746322-21746341 Msa0763070:intron 15.0%
!! AAAAATATAAAATTGACATG+TGG + chr5_2:21746627-21746646 None:intergenic 15.0%
!!! ACATGTCAATTTTATATTTT+TGG - chr5_2:21746626-21746645 Msa0763070:CDS 15.0%
!!! CATGTCAATTTTATATTTTT+GGG - chr5_2:21746627-21746646 Msa0763070:CDS 15.0%
!! AAGAGAAAGCAATTAAATTA+GGG + chr5_2:21743503-21743522 None:intergenic 20.0%
!!! TACAACTTTTTTTTTTTAGG+TGG - chr5_2:21743871-21743890 Msa0763070:intron 20.0%
!! TACAAATATCATTTCTCTTA+AGG + chr5_2:21744037-21744056 None:intergenic 20.0%
!! TAAGTCATAAATATAATTGC+TGG - chr5_2:21744289-21744308 Msa0763070:intron 20.0%
!!! CAATTTTTTTTTTGTTATCG+TGG + chr5_2:21744383-21744402 None:intergenic 20.0%
!!! ACAGTTTTAAGATTAAACAA+TGG - chr5_2:21744459-21744478 Msa0763070:intron 20.0%
!!! TTCATTTTGATCTTAAACTA+TGG + chr5_2:21744534-21744553 None:intergenic 20.0%
!! TGTATTTAAAGGTTGTTAAA+AGG + chr5_2:21744983-21745002 None:intergenic 20.0%
!!! TTTTAACAACCTTTAAATAC+AGG - chr5_2:21744982-21745001 Msa0763070:intron 20.0%
!! TATGAATTTCCTGTATTTAA+AGG + chr5_2:21744994-21745013 None:intergenic 20.0%
!! GGAGATTACAAATTTATATT+GGG + chr5_2:21745060-21745079 None:intergenic 20.0%
!! AAAAAAGTTGTGAAACTAAA+GGG + chr5_2:21745525-21745544 None:intergenic 20.0%
!! AAAAAAAGTTGTGAAACTAA+AGG + chr5_2:21745526-21745545 None:intergenic 20.0%
!!! AGTTTCACAACTTTTTTTTT+TGG - chr5_2:21745528-21745547 Msa0763070:intron 20.0%
!!! TCTTTTACTAAATTTGTTTC+CGG - chr5_2:21745559-21745578 Msa0763070:intron 20.0%
!! CTTAAGTTATAGTTGTAATT+TGG - chr5_2:21745812-21745831 Msa0763070:intron 20.0%
!!! GCATTTTTAAGATTAAACAA+TGG - chr5_2:21746092-21746111 Msa0763070:intron 20.0%
!!! TGTAATGGTAACTTTTAAAA+AGG + chr5_2:21746151-21746170 None:intergenic 20.0%
!!! ATGACAGGTTTTTATAAAAA+CGG - chr5_2:21746730-21746749 Msa0763070:intron 20.0%
!!! TTGACTTGTTTCTTCTAATT+AGG - chr5_2:21743412-21743431 Msa0763070:three_prime_UTR 25.0%
! GAAGAGAAAGCAATTAAATT+AGG + chr5_2:21743504-21743523 None:intergenic 25.0%
!!! ATAGCTATTTTCACAGAAAT+AGG + chr5_2:21743526-21743545 None:intergenic 25.0%
!! ATTTGTTACCTATATCTGTT+TGG - chr5_2:21743564-21743583 Msa0763070:intron 25.0%
! ATAAGCACGTAAGATTATTT+GGG + chr5_2:21743804-21743823 None:intergenic 25.0%
! TGTAAAACTAATAACCTGTT+TGG + chr5_2:21743855-21743874 None:intergenic 25.0%
!! TTTTGTACTAAATATGTCTC+TGG - chr5_2:21743899-21743918 Msa0763070:intron 25.0%
!! GATATTTGTACAACCATTTT+GGG + chr5_2:21744131-21744150 None:intergenic 25.0%
!! TGATATTTGTACAACCATTT+TGG + chr5_2:21744132-21744151 None:intergenic 25.0%
! ATTACACAAATGCAATTCTA+AGG + chr5_2:21744164-21744183 None:intergenic 25.0%
!!! TTTGTCTGTTTTGAAATAGT+TGG - chr5_2:21744227-21744246 Msa0763070:intron 25.0%
!!! TTTTTTTTTTGTTATCGTGG+TGG + chr5_2:21744380-21744399 None:intergenic 25.0%
!!! CTGTTCTAAAATCTAACAAT+TGG + chr5_2:21744695-21744714 None:intergenic 25.0%
!!! CAATTGTTAGATTTTAGAAC+AGG - chr5_2:21744693-21744712 Msa0763070:intron 25.0%
! GGGAGATTACAAATTTATAT+TGG + chr5_2:21745061-21745080 None:intergenic 25.0%
! TCATTAACAGTCATAACTAT+AGG - chr5_2:21745099-21745118 Msa0763070:intron 25.0%
! GGAATTCTACAATAATAAAG+AGG - chr5_2:21745120-21745139 Msa0763070:intron 25.0%
! ATCTATTCAGATAAATGAAC+AGG + chr5_2:21745166-21745185 None:intergenic 25.0%
! GCTGAAATAATTATGATACT+TGG - chr5_2:21745197-21745216 Msa0763070:intron 25.0%
! ATTAATGTCTTAAGTGCTTA+TGG - chr5_2:21745264-21745283 Msa0763070:intron 25.0%
! ATAAGTCTATTCTGTTTCAA+TGG - chr5_2:21745600-21745619 Msa0763070:intron 25.0%
!! ATTAACTTATTGAAAGCATG+AGG - chr5_2:21745728-21745747 Msa0763070:intron 25.0%
!! TTAACTTATTGAAAGCATGA+GGG - chr5_2:21745729-21745748 Msa0763070:intron 25.0%
! ATCTCTTCAGAAGTTATTAT+TGG - chr5_2:21745773-21745792 Msa0763070:intron 25.0%
!! TTCATCTCTAAAGGAATATA+AGG - chr5_2:21746185-21746204 Msa0763070:intron 25.0%
! AATCATTGTGTATATACTAC+AGG - chr5_2:21746208-21746227 Msa0763070:intron 25.0%
! ATCATTGTGTATATACTACA+GGG - chr5_2:21746209-21746228 Msa0763070:intron 25.0%
! GTAATGATCATACATTCATT+TGG - chr5_2:21746512-21746531 Msa0763070:intron 25.0%
! CTAGAACAATTTAAAGGAAA+AGG + chr5_2:21746654-21746673 None:intergenic 25.0%
!! TGACAGGTTTTTATAAAAAC+GGG - chr5_2:21746731-21746750 Msa0763070:intron 25.0%
! CAGAATTTATACTAATGCTT+AGG - chr5_2:21746770-21746789 Msa0763070:intron 25.0%
! TGTTAAAACATAACATGCAA+AGG + chr5_2:21746806-21746825 None:intergenic 25.0%
!! AAGGGATAATCAAATCATTT+TGG - chr5_2:21746873-21746892 Msa0763070:five_prime_UTR 25.0%
CAAAATCGTTATTTAGCGTT+TGG + chr5_2:21743189-21743208 None:intergenic 30.0%
! CGCTAAATAACGATTTTGAA+AGG - chr5_2:21743191-21743210 Msa0763070:three_prime_UTR 30.0%
GTTTCTTCTAATTAGGTCAT+TGG - chr5_2:21743419-21743438 Msa0763070:three_prime_UTR 30.0%
ATTAGGTCATTGGAAACAAA+TGG - chr5_2:21743429-21743448 Msa0763070:three_prime_UTR 30.0%
TTAGGTCATTGGAAACAAAT+GGG - chr5_2:21743430-21743449 Msa0763070:three_prime_UTR 30.0%
CTGTATATCCAAACAGATAT+AGG + chr5_2:21743575-21743594 None:intergenic 30.0%
ATATAAGTGCTTATGGCATA+AGG - chr5_2:21743618-21743637 Msa0763070:intron 30.0%
ATTTATCTCCATAAACTCCA+CGG + chr5_2:21743745-21743764 None:intergenic 30.0%
CATAAGCACGTAAGATTATT+TGG + chr5_2:21743805-21743824 None:intergenic 30.0%
AACTAATAACCTGTTTGGAT+TGG + chr5_2:21743850-21743869 None:intergenic 30.0%
AAGCTACTACATAAGGAAAT+TGG + chr5_2:21743959-21743978 None:intergenic 30.0%
ACTAATCAAGCTACTACATA+AGG + chr5_2:21743966-21743985 None:intergenic 30.0%
CATAGAACAACATTGAAAAG+CGG + chr5_2:21743991-21744010 None:intergenic 30.0%
! TGATATTTGTACAGCCATTT+TGG - chr5_2:21744046-21744065 Msa0763070:intron 30.0%
!! GATATTTGTACAGCCATTTT+GGG - chr5_2:21744047-21744066 Msa0763070:intron 30.0%
ACTTCAATATTGCACAACAA+TGG + chr5_2:21744253-21744272 None:intergenic 30.0%
ATATTGAAGTTGTAACCCAT+TGG - chr5_2:21744263-21744282 Msa0763070:intron 30.0%
ATTTATGACTTACGACCAAT+GGG + chr5_2:21744281-21744300 None:intergenic 30.0%
TATTTATGACTTACGACCAA+TGG + chr5_2:21744282-21744301 None:intergenic 30.0%
TGGAGTTAATGATACTGAAA+AGG + chr5_2:21744360-21744379 None:intergenic 30.0%
!!! CTACACCAAGTTTTTTTCTA+CGG + chr5_2:21744411-21744430 None:intergenic 30.0%
!! CTGTTCTAAAATCCAACAAT+TGG - chr5_2:21744599-21744618 Msa0763070:intron 30.0%
TTGGGCTGTTAGAAATTTAT+AGG + chr5_2:21745042-21745061 None:intergenic 30.0%
!! ATTATTGGCTTATAACTCAG+CGG - chr5_2:21745788-21745807 Msa0763070:intron 30.0%
TGCTACATACATTATTTGAG+TGG - chr5_2:21745836-21745855 Msa0763070:intron 30.0%
! CAACTACGAAAAAACTTGTT+TGG - chr5_2:21746028-21746047 Msa0763070:intron 30.0%
AGTTGGGTATAACAATGTAA+TGG + chr5_2:21746166-21746185 None:intergenic 30.0%
! ATTCCTTTAGAGATGAAGTT+GGG + chr5_2:21746182-21746201 None:intergenic 30.0%
! TATTCCTTTAGAGATGAAGT+TGG + chr5_2:21746183-21746202 None:intergenic 30.0%
GTATATACTACAGGGATATT+AGG - chr5_2:21746217-21746236 Msa0763070:intron 30.0%
!! GCATTTTAATGTCATTCTCT+TGG - chr5_2:21746273-21746292 Msa0763070:intron 30.0%
!! GATTAATTTTAGAGATGCAC+TGG - chr5_2:21746344-21746363 Msa0763070:intron 30.0%
! TGTCAATTTTCTATCTCACT+GGG - chr5_2:21746486-21746505 Msa0763070:intron 30.0%
! TGCTTGCTAGAACAATTTAA+AGG + chr5_2:21746660-21746679 None:intergenic 30.0%
AATGTGTGTAGTGATAACTA+AGG - chr5_2:21746854-21746873 Msa0763070:exon 30.0%
ATGTGTGTAGTGATAACTAA+GGG - chr5_2:21746855-21746874 Msa0763070:exon 30.0%
AATCAGCTTGAAGAAAGTCA+AGG + chr5_2:21743463-21743482 None:intergenic 35.0%
TTCAAGCTGATTACACTGAA+GGG - chr5_2:21743471-21743490 Msa0763070:three_prime_UTR 35.0%
TAGCGTCATATAAGTGCTTA+TGG - chr5_2:21743611-21743630 Msa0763070:intron 35.0%
! TGTTTTCATAAGTTATCCCG+TGG - chr5_2:21743725-21743744 Msa0763070:CDS 35.0%
TTTATCTCCATAAACTCCAC+GGG + chr5_2:21743744-21743763 None:intergenic 35.0%
GCTAGTAGTTAATCTCTAAC+AGG - chr5_2:21743824-21743843 Msa0763070:intron 35.0%
TTCTATGAACACATAACCAG+TGG - chr5_2:21744004-21744023 Msa0763070:intron 35.0%
TACTATATGCATTACTCGAG+TGG - chr5_2:21744313-21744332 Msa0763070:intron 35.0%
!! AAAACTTGGTGTAGACTACT+AGG - chr5_2:21744417-21744436 Msa0763070:intron 35.0%
!! CTGTTCTAAAATCCAGCAAT+TGG - chr5_2:21744815-21744834 Msa0763070:intron 35.0%
AGCTTGTATGGAACTATTGA+AGG - chr5_2:21744855-21744874 Msa0763070:intron 35.0%
CTGTTCTAATTTCCATCAAG+TGG + chr5_2:21744911-21744930 None:intergenic 35.0%
TATCGTATTTCCATATCTCC+AGG + chr5_2:21745397-21745416 None:intergenic 35.0%
! ACTAAAGGGCATGTTTGAAT+TGG + chr5_2:21745511-21745530 None:intergenic 35.0%
! AATTTGTTTCCGGCATACTT+TGG - chr5_2:21745569-21745588 Msa0763070:intron 35.0%
! TTTTCATAGCCAAAGTATGC+CGG + chr5_2:21745581-21745600 None:intergenic 35.0%
CTATTCTGTTTCAATGGTTC+TGG - chr5_2:21745606-21745625 Msa0763070:intron 35.0%
! GCATTTTGTAATAGATGTCG+CGG - chr5_2:21745675-21745694 Msa0763070:intron 35.0%
! CTTTTTAGACATGAGAACTG+GGG + chr5_2:21745993-21746012 None:intergenic 35.0%
! GCTTTTTAGACATGAGAACT+GGG + chr5_2:21745994-21746013 None:intergenic 35.0%
! AGCTTTTTAGACATGAGAAC+TGG + chr5_2:21745995-21746014 None:intergenic 35.0%
! CTACGAAAAAACTTGTTTGG+CGG - chr5_2:21746031-21746050 Msa0763070:intron 35.0%
TTGTTTGGCGGTATGAAATT+CGG - chr5_2:21746043-21746062 Msa0763070:intron 35.0%
ATACCCAACTTCATCTCTAA+AGG - chr5_2:21746176-21746195 Msa0763070:intron 35.0%
AATTCAGTAGCTTCTCGATA+AGG + chr5_2:21746425-21746444 None:intergenic 35.0%
! GTGTCAATTTTCTATCTCAC+TGG - chr5_2:21746485-21746504 Msa0763070:intron 35.0%
! GAAAAGCATGAAGCCAATTA+AGG - chr5_2:21746546-21746565 Msa0763070:intron 35.0%
AAGCCAATTAAGGAGTCTTA+AGG - chr5_2:21746556-21746575 Msa0763070:intron 35.0%
GTTCCTTAAGACTCCTTAAT+TGG + chr5_2:21746562-21746581 None:intergenic 35.0%
!!! AAGCAGTTTTAGCTGTGTTT+TGG - chr5_2:21746675-21746694 Msa0763070:intron 35.0%
AGACAAAACTGTAGAATGAC+AGG - chr5_2:21746715-21746734 Msa0763070:intron 35.0%
!! AATCAAATCATTTTGGCCTC+TGG - chr5_2:21746880-21746899 Msa0763070:five_prime_UTR 35.0%
GTAAATAATCCCATAACCAG+AGG + chr5_2:21746899-21746918 None:intergenic 35.0%
GAAAGGTTTCTACTGTTGTG+CGG - chr5_2:21743208-21743227 Msa0763070:three_prime_UTR 40.0%
AAGATTAGAAACCTTTCCGC+AGG + chr5_2:21743278-21743297 None:intergenic 40.0%
CTTCAAGCTGATTACACTGA+AGG - chr5_2:21743470-21743489 Msa0763070:three_prime_UTR 40.0%
AAGTTATCCCGTGGAGTTTA+TGG - chr5_2:21743734-21743753 Msa0763070:CDS 40.0%
TGTCTCTGGCATTCATTCTT+TGG - chr5_2:21743913-21743932 Msa0763070:intron 40.0%
CTCTTAAGGTATACATCCAC+TGG + chr5_2:21744023-21744042 None:intergenic 40.0%
GATAGAGAGTTGTCCCAAAA+TGG + chr5_2:21744063-21744082 None:intergenic 40.0%
TTCTTCTTCCCTCTTCTTTC+GGG + chr5_2:21744102-21744121 None:intergenic 40.0%
CTTCTTCTTCCCTCTTCTTT+CGG + chr5_2:21744103-21744122 None:intergenic 40.0%
AGAAGAAGGTTGTCCCAAAA+TGG - chr5_2:21744115-21744134 Msa0763070:intron 40.0%
GAAGCTGTGATACCAATTGT+TGG + chr5_2:21744614-21744633 None:intergenic 40.0%
AGCTTGTAAGGCATGATTGA+AGG - chr5_2:21744639-21744658 Msa0763070:intron 40.0%
!! CAGCTTCAGTTTAGCTTGTA+TGG - chr5_2:21744843-21744862 Msa0763070:intron 40.0%
ATCAAGTGGTATCAGAGCTT+CGG + chr5_2:21744897-21744916 None:intergenic 40.0%
TCTGTTTCCACAAACTAACC+TGG - chr5_2:21745376-21745395 Msa0763070:intron 40.0%
!! CATATCTCCAGGTTAGTTTG+TGG + chr5_2:21745386-21745405 None:intergenic 40.0%
CACAAACTAACCTGGAGATA+TGG - chr5_2:21745384-21745403 Msa0763070:intron 40.0%
AAGCACTTGTGAGACTGTTT+GGG + chr5_2:21745463-21745482 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG + chr5_2:21745464-21745483 None:intergenic 40.0%
CTTCTCGATAAGGTCAACAT+GGG + chr5_2:21746415-21746434 None:intergenic 40.0%
CATTCATTTGGTTGCAGCTA+TGG - chr5_2:21746524-21746543 Msa0763070:intron 40.0%
TAAAATTGACATGTGGCCAC+AGG + chr5_2:21746620-21746639 None:intergenic 40.0%
!! ATCATTTTGGCCTCTGGTTA+TGG - chr5_2:21746886-21746905 Msa0763070:five_prime_UTR 40.0%
!! TCATTTTGGCCTCTGGTTAT+GGG - chr5_2:21746887-21746906 Msa0763070:five_prime_UTR 40.0%
TCTAACAGGCCAATCCAAAC+AGG - chr5_2:21743838-21743857 Msa0763070:intron 45.0%
! TGTTTCTGTCCCGAAAGAAG+AGG - chr5_2:21744090-21744109 Msa0763070:intron 45.0%
GTTTCTGTCCCGAAAGAAGA+GGG - chr5_2:21744091-21744110 Msa0763070:intron 45.0%
CGAAAGAAGAGGGAAGAAGA+AGG - chr5_2:21744101-21744120 Msa0763070:intron 45.0%
TCGGGCCGTAGAAAAAAACT+TGG - chr5_2:21744403-21744422 Msa0763070:intron 45.0%
CAGCTTCAGTTGAGCTTGTA+AGG - chr5_2:21744627-21744646 Msa0763070:intron 45.0%
GAAGCTGTGATACCAATTGC+TGG + chr5_2:21744830-21744849 None:intergenic 45.0%
GAGCTTCGGTTAAGCTTGTA+AGG + chr5_2:21744883-21744902 None:intergenic 45.0%
! GAAGCTCTGATACCACTTGA+TGG - chr5_2:21744896-21744915 Msa0763070:intron 45.0%
CTCACAAGTGCTTATGTCAG+TGG - chr5_2:21745470-21745489 Msa0763070:intron 45.0%
TTAGACATGAGAACTGGGGA+AGG + chr5_2:21745989-21746008 None:intergenic 45.0%
TGGCGGTATGAAATTCGGAT+CGG - chr5_2:21746048-21746067 Msa0763070:intron 45.0%
ATGAAATTCGGATCGGATGC+AGG - chr5_2:21746055-21746074 Msa0763070:intron 45.0%
TGAAATTCGGATCGGATGCA+GGG - chr5_2:21746056-21746075 Msa0763070:intron 45.0%
TAGAGATGCACTGGATGCTT+TGG - chr5_2:21746353-21746372 Msa0763070:intron 45.0%
AGAGATGCACTGGATGCTTT+GGG - chr5_2:21746354-21746373 Msa0763070:intron 45.0%
GCTTCTCGATAAGGTCAACA+TGG + chr5_2:21746416-21746435 None:intergenic 45.0%
AGCACGCAACTGACACATTT+CGG + chr5_2:21746594-21746613 None:intergenic 45.0%
CGCAGGTGAAACAACGAACT+GGG + chr5_2:21743261-21743280 None:intergenic 50.0%
! CCAGTTCGTTGTTTCACCTG+CGG - chr5_2:21743259-21743278 Msa0763070:three_prime_UTR 50.0%
! TCGTTGTTTCACCTGCGGAA+AGG - chr5_2:21743264-21743283 Msa0763070:three_prime_UTR 50.0%
GAGATGCACTGGATGCTTTG+GGG - chr5_2:21746355-21746374 Msa0763070:intron 50.0%
GCATACGCCTGCAGCAATAT+CGG + chr5_2:21746386-21746405 None:intergenic 50.0%
CCGCAGGTGAAACAACGAAC+TGG + chr5_2:21743262-21743281 None:intergenic 55.0%
!! TGCACTGGATGCTTTGGGGT+TGG - chr5_2:21746359-21746378 Msa0763070:intron 55.0%
! GGTTGGTCCGATATTGCTGC+AGG - chr5_2:21746376-21746395 Msa0763070:intron 55.0%
TCAGTTGCGTGCTAGTCCTG+TGG - chr5_2:21746601-21746620 Msa0763070:intron 55.0%
GAGAACTGGGGAAGGACGCT+AGG + chr5_2:21745981-21746000 None:intergenic 60.0%
TGTGCGGCGTGAGCAGAGAG+AGG - chr5_2:21743224-21743243 Msa0763070:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 21743183 21746932 21743183 ID=Msa0763070;Name=Msa0763070
chr5_2 mRNA 21743183 21746932 21743183 ID=Msa0763070-mRNA-1;Parent=Msa0763070;Name=Msa0763070-mRNA-1;_AED=0.20;_eAED=0.20;_QI=67|1|1|1|0|0|4|366|71
chr5_2 exon 21743183 21743574 21743183 ID=Msa0763070-mRNA-1:exon:9046;Parent=Msa0763070-mRNA-1
chr5_2 exon 21743665 21743759 21743665 ID=Msa0763070-mRNA-1:exon:9045;Parent=Msa0763070-mRNA-1
chr5_2 exon 21746623 21746681 21746623 ID=Msa0763070-mRNA-1:exon:9044;Parent=Msa0763070-mRNA-1
chr5_2 exon 21746830 21746932 21746830 ID=Msa0763070-mRNA-1:exon:9043;Parent=Msa0763070-mRNA-1
chr5_2 five_prime_UTR 21746866 21746932 21746866 ID=Msa0763070-mRNA-1:five_prime_utr;Parent=Msa0763070-mRNA-1
chr5_2 CDS 21746830 21746865 21746830 ID=Msa0763070-mRNA-1:cds;Parent=Msa0763070-mRNA-1
chr5_2 CDS 21746623 21746681 21746623 ID=Msa0763070-mRNA-1:cds;Parent=Msa0763070-mRNA-1
chr5_2 CDS 21743665 21743759 21743665 ID=Msa0763070-mRNA-1:cds;Parent=Msa0763070-mRNA-1
chr5_2 CDS 21743549 21743574 21743549 ID=Msa0763070-mRNA-1:cds;Parent=Msa0763070-mRNA-1
chr5_2 three_prime_UTR 21743183 21743548 21743183 ID=Msa0763070-mRNA-1:three_prime_utr;Parent=Msa0763070-mRNA-1
Gene Sequence

>Msa0763070

ATGATTATCCCAGTTCGTTGTTTCACCTGCGGAAAGGTCATTGGAAACAAATGGGATTCTTACCTTGACTTTCTTCAAGCTGATTACACTGAAGGAGATGCACTGGATGCTTTGGGGTTGGTCCGATATTGCTGCAGGCGTATGCTTATGACCCATGTTGACCTTATCGAGAAGCTACTGAATTACAATACTATGGAAAAGCATGAAGCCAATTAA

Protein sequence

>Msa0763070

MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKHEAN*