Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656950 | XP_003629600.2 | 95.161 | 434 | 21 | 0 | 1 | 434 | 1 | 434 | 0.0 | 856 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656950 | sp|Q9LIS1|CR26L_ARATH | 42.494 | 433 | 228 | 10 | 1 | 429 | 1 | 416 | 7.73e-106 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656950 | A0A396GN49 | 95.161 | 434 | 21 | 0 | 1 | 434 | 1 | 434 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0617650 | Msa0656950 | 0.961119 | 2.473005e-119 | -8.615850e-47 |
| Msa0648180 | Msa0656950 | 0.818969 | 1.485000e-52 | -8.615850e-47 |
| Msa0648270 | Msa0656950 | 0.805664 | 1.197102e-49 | -8.615850e-47 |
| Msa0656950 | Msa0700610 | 0.986127 | 9.241980e-166 | -8.615850e-47 |
| Msa0656950 | Msa0700850 | 0.850222 | 1.952063e-60 | -8.615850e-47 |
| Msa0656950 | Msa0700910 | 0.814561 | 1.447333e-51 | -8.615850e-47 |
| Msa0656950 | Msa0722940 | 0.804177 | 2.448700e-49 | -8.615850e-47 |
| Msa0656950 | Msa0723150 | 0.813199 | 2.888821e-51 | -8.615850e-47 |
| Msa0656950 | Msa0886880 | 0.800055 | 1.724820e-48 | -8.615850e-47 |
| Msa0656950 | Msa1143380 | 0.962628 | 4.185141e-121 | -8.615850e-47 |
| Msa0656950 | Msa1178470 | 0.826344 | 2.855678e-54 | -8.615850e-47 |
| Msa0656950 | Msa1201710 | 0.801354 | 9.367629e-49 | -8.615850e-47 |
| Msa0656950 | Msa1208510 | 0.804772 | 1.840053e-49 | -8.615850e-47 |
| Msa0656950 | Msa1214730 | 0.843977 | 1.005177e-58 | -8.615850e-47 |
| Msa0656950 | Msa1214870 | 0.840495 | 8.401872e-58 | -8.615850e-47 |
| Msa0656950 | Msa1232860 | 0.806715 | 7.188304e-50 | -8.615850e-47 |
| Msa0656950 | Msa1258810 | 0.823348 | 1.454149e-53 | -8.615850e-47 |
| Msa0656950 | Msa1275290 | 0.805187 | 1.506677e-49 | -8.615850e-47 |
| Msa0656950 | Msa1294730 | 0.824935 | 6.164929e-54 | -8.615850e-47 |
| Msa0656950 | Msa1300850 | 0.808099 | 3.657084e-50 | -8.615850e-47 |
| Msa0656950 | Msa1313460 | 0.808568 | 2.905963e-50 | -8.615850e-47 |
| Msa0656950 | Msa1330240 | 0.824289 | 8.750523e-54 | -8.615850e-47 |
| Msa0656950 | Msa1369860 | 0.810115 | 1.353547e-50 | -8.615850e-47 |
| Msa0656950 | Msa1417650 | 0.830228 | 3.304935e-55 | -8.615850e-47 |
| Msa0260960 | Msa0656950 | 0.809084 | 2.253251e-50 | -8.615850e-47 |
| Msa0290950 | Msa0656950 | 0.800594 | 1.339701e-48 | -8.615850e-47 |
| Msa0315480 | Msa0656950 | 0.803729 | 3.033405e-49 | -8.615850e-47 |
| Msa0511480 | Msa0656950 | 0.810531 | 1.100760e-50 | -8.615850e-47 |
| Msa0514280 | Msa0656950 | 0.800362 | 1.493183e-48 | -8.615850e-47 |
| Msa0524210 | Msa0656950 | 0.822367 | 2.460592e-53 | -8.615850e-47 |
| Msa0554420 | Msa0656950 | 0.808512 | 2.986713e-50 | -8.615850e-47 |
| Msa0558820 | Msa0656950 | 0.809035 | 2.308950e-50 | -8.615850e-47 |
| Msa0564150 | Msa0656950 | 0.944217 | 2.920954e-103 | -8.615850e-47 |
| Msa0594180 | Msa0656950 | 0.824064 | 9.881099e-54 | -8.615850e-47 |
| Msa0601110 | Msa0656950 | 0.809501 | 1.834488e-50 | -8.615850e-47 |
| Msa0601120 | Msa0656950 | 0.808422 | 3.122267e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656950 | MtrunA17_Chr8g0378151 | 95.161 | 434 | 21 | 0 | 1 | 434 | 1 | 434 | 0.0 | 856 |
| Msa0656950 | MtrunA17_Chr2g0298091 | 41.667 | 420 | 226 | 8 | 16 | 423 | 16 | 428 | 5.60e-100 | 305 |
| Msa0656950 | MtrunA17_Chr3g0132831 | 38.517 | 418 | 243 | 8 | 16 | 423 | 15 | 428 | 4.58e-95 | 293 |
| Msa0656950 | MtrunA17_Chr1g0163441 | 37.123 | 431 | 250 | 9 | 16 | 431 | 15 | 439 | 6.74e-90 | 279 |
| Msa0656950 | MtrunA17_Chr1g0148851 | 25.124 | 402 | 282 | 9 | 37 | 419 | 30 | 431 | 1.55e-28 | 116 |
| Msa0656950 | MtrunA17_Chr7g0274021 | 24.524 | 420 | 275 | 12 | 32 | 419 | 28 | 437 | 5.09e-28 | 115 |
| Msa0656950 | MtrunA17_Chr4g0001861 | 30.964 | 197 | 116 | 3 | 1 | 196 | 10 | 187 | 1.57e-17 | 84.3 |
| Msa0656950 | MtrunA17_Chr2g0334001 | 24.890 | 454 | 272 | 22 | 8 | 423 | 6 | 428 | 1.63e-16 | 81.3 |
| Msa0656950 | MtrunA17_Chr7g0224391 | 30.726 | 179 | 121 | 2 | 20 | 196 | 24 | 201 | 2.62e-15 | 77.4 |
| Msa0656950 | MtrunA17_Chr8g0386141 | 31.169 | 154 | 103 | 2 | 46 | 196 | 39 | 192 | 6.48e-15 | 76.3 |
| Msa0656950 | MtrunA17_Chr3g0087401 | 25.954 | 262 | 169 | 7 | 37 | 278 | 26 | 282 | 3.11e-14 | 74.3 |
| Msa0656950 | MtrunA17_Chr7g0273791 | 30.075 | 133 | 91 | 1 | 49 | 179 | 49 | 181 | 2.79e-13 | 71.6 |
| Msa0656950 | MtrunA17_Chr8g0371821 | 24.000 | 250 | 178 | 5 | 43 | 284 | 34 | 279 | 6.04e-13 | 70.1 |
| Msa0656950 | MtrunA17_Chr4g0004691 | 30.882 | 136 | 87 | 3 | 61 | 190 | 49 | 183 | 3.65e-12 | 65.1 |
| Msa0656950 | MtrunA17_Chr3g0132001 | 30.519 | 154 | 104 | 2 | 46 | 196 | 46 | 199 | 3.99e-12 | 67.8 |
| Msa0656950 | MtrunA17_Chr8g0376901 | 21.525 | 446 | 282 | 17 | 19 | 425 | 10 | 426 | 1.96e-11 | 65.5 |
| Msa0656950 | MtrunA17_Chr7g0273721 | 32.374 | 139 | 88 | 4 | 46 | 179 | 45 | 182 | 3.14e-11 | 65.1 |
| Msa0656950 | MtrunA17_Chr7g0273761 | 28.358 | 134 | 93 | 2 | 49 | 179 | 421 | 554 | 4.98e-11 | 65.1 |
| Msa0656950 | MtrunA17_Chr5g0433641 | 30.827 | 133 | 90 | 1 | 49 | 179 | 49 | 181 | 6.03e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656950 | AT3G23840.1 | 42.494 | 433 | 228 | 10 | 1 | 429 | 1 | 416 | 7.86e-107 | 322 |
| Msa0656950 | AT4G13840.1 | 39.019 | 428 | 250 | 6 | 5 | 429 | 7 | 426 | 3.82e-105 | 318 |
| Msa0656950 | AT4G24510.1 | 34.499 | 429 | 250 | 11 | 10 | 423 | 4 | 416 | 2.96e-84 | 265 |
| Msa0656950 | AT2G19070.1 | 26.392 | 413 | 250 | 18 | 38 | 407 | 29 | 430 | 1.69e-18 | 87.8 |
| Msa0656950 | AT4G29250.1 | 24.550 | 444 | 261 | 18 | 19 | 419 | 27 | 439 | 2.00e-17 | 84.7 |
| Msa0656950 | AT5G48930.1 | 24.291 | 247 | 178 | 4 | 35 | 274 | 25 | 269 | 2.99e-14 | 74.7 |
| Msa0656950 | AT5G41040.1 | 33.962 | 159 | 99 | 3 | 46 | 201 | 65 | 220 | 3.62e-14 | 74.7 |
| Msa0656950 | AT5G41040.2 | 33.962 | 159 | 99 | 3 | 46 | 201 | 49 | 204 | 3.79e-14 | 74.3 |
| Msa0656950 | AT5G57840.1 | 22.384 | 411 | 290 | 10 | 35 | 420 | 25 | 431 | 1.12e-13 | 73.2 |
| Msa0656950 | AT5G63560.1 | 30.636 | 173 | 104 | 5 | 43 | 199 | 27 | 199 | 1.55e-13 | 72.4 |
| Msa0656950 | AT3G48720.1 | 30.323 | 155 | 104 | 3 | 46 | 196 | 41 | 195 | 2.80e-13 | 71.6 |
| Msa0656950 | AT1G65450.1 | 27.049 | 244 | 167 | 6 | 46 | 278 | 51 | 294 | 4.60e-12 | 68.2 |
Find 141 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTAGTTGATTGTAAATT+TGG | 0.111021 | 4_3:-66307194 | Msa0656950:three_prime_UTR |
| ACAACTTGCAAGAACAAATT+TGG | 0.140491 | 4_3:-66307853 | Msa0656950:CDS |
| TGACACTAGTTTGAAAATTT+TGG | 0.151455 | 4_3:-66307633 | Msa0656950:CDS |
| GTCTCAACACCCCTTAATTT+TGG | 0.157335 | 4_3:-66307992 | Msa0656950:CDS |
| CCTTAGCTGGGCCCATGTTA+TGG | 0.166786 | 4_3:-66308107 | Msa0656950:CDS |
| AAACTTTATGTGCAATAATT+TGG | 0.180735 | 4_3:-66307799 | Msa0656950:CDS |
| CCTCATTAACGGTTTGTTTA+TGG | 0.186243 | 4_3:-66307169 | Msa0656950:three_prime_UTR |
| CTTAGCTGGGCCCATGTTAT+GGG | 0.193486 | 4_3:-66308106 | Msa0656950:CDS |
| CTTCAGATTTCATCAACTTA+TGG | 0.205690 | 4_3:-66308069 | Msa0656950:CDS |
| GGATTTCATTGGGCCTTAGC+TGG | 0.223582 | 4_3:-66308120 | Msa0656950:CDS |
| AAGCTTAATAACCACTAATA+TGG | 0.238110 | 4_3:-66313773 | Msa0656950:exon |
| GTTCTTGCAAGTTGTTCATT+AGG | 0.260077 | 4_3:+66307861 | None:intergenic |
| TGTTAGTTGATTGTAAATTT+GGG | 0.292985 | 4_3:-66307193 | Msa0656950:three_prime_UTR |
| TTCAGATTTCATCAACTTAT+GGG | 0.298539 | 4_3:-66308068 | Msa0656950:CDS |
| TGGTAGGGGCAATGATATAA+TGG | 0.301115 | 4_3:-66307708 | Msa0656950:CDS |
| TCATCCCTTGCGGCCGATTC+CGG | 0.304819 | 4_3:-66313525 | Msa0656950:CDS |
| TGATGAAAGAAATCAAATTA+TGG | 0.305939 | 4_3:-66307585 | Msa0656950:CDS |
| TTCTTGCAAGTTGTTCATTA+GGG | 0.331603 | 4_3:+66307862 | None:intergenic |
| AAGCCATTCATCTAGAGTTT+TGG | 0.331771 | 4_3:+66313432 | None:intergenic |
| CTCGTTTCTCAACAAGTCAT+TGG | 0.333685 | 4_3:-66313379 | Msa0656950:CDS |
| TGTGTATGACTTAAAATTAA+AGG | 0.335448 | 4_3:-66307480 | Msa0656950:CDS |
| TTTAAGATAGTGAAGTTTCA+TGG | 0.343891 | 4_3:+66313636 | None:intergenic |
| GGGAGATGAAGGTGTTGTTT+TGG | 0.345479 | 4_3:-66307417 | Msa0656950:CDS |
| TTCATCTTCTGGCAATATAA+TGG | 0.352304 | 4_3:+66307355 | None:intergenic |
| TTGACCCGGTTGGTGATCAT+TGG | 0.353117 | 4_3:-66307937 | Msa0656950:CDS |
| CAACTTGCAAGAACAAATTT+GGG | 0.358829 | 4_3:-66307852 | Msa0656950:CDS |
| TTAAAGAACCTGCAACAAAA+TGG | 0.359088 | 4_3:+66313333 | None:intergenic |
| CGATTCCGGCGATCGGAATC+TGG | 0.360082 | 4_3:-66313511 | Msa0656950:CDS |
| GAAGGAGAAAATGATAATTC+TGG | 0.360908 | 4_3:+66313355 | None:intergenic |
| TTGAGAAACGAGCAACTTGT+AGG | 0.365130 | 4_3:+66313390 | None:intergenic |
| AACTGTCACGGTTGTGGGTT+CGG | 0.365252 | 4_3:+66307748 | None:intergenic |
| GTTGGGCCAGGTCATGCCAC+TGG | 0.366990 | 4_3:-66313697 | Msa0656950:CDS |
| AAGTGTGGTGGGATTTCATT+GGG | 0.369203 | 4_3:-66308130 | Msa0656950:CDS |
| AGGAACCAGCTACATTTAAA+CGG | 0.370152 | 4_3:-66307961 | Msa0656950:CDS |
| TTGAAAGATACAAGAGGCTT+TGG | 0.372426 | 4_3:+66313818 | None:intergenic |
| TAAGTCAAGAAATGTCAAAT+TGG | 0.372854 | 4_3:+66307514 | None:intergenic |
| AGGGGTGTTGAGACGGATCT+TGG | 0.389004 | 4_3:+66308001 | None:intergenic |
| TTTGGTGCAATTGGCCTCAA+TGG | 0.403810 | 4_3:+66313450 | None:intergenic |
| TTTGTTTACTACACACTTCA+AGG | 0.403996 | 4_3:-66307443 | Msa0656950:CDS |
| AGTGTGTAGTAAACAAATCT+TGG | 0.405045 | 4_3:+66307449 | None:intergenic |
| ATATCATTGCCCCTACCATT+GGG | 0.408070 | 4_3:+66307713 | None:intergenic |
| TAAATTTGGGGCCTCATTAA+CGG | 0.408301 | 4_3:-66307180 | Msa0656950:three_prime_UTR |
| TTGTGGGAAAACCATATTAG+TGG | 0.409995 | 4_3:+66313762 | None:intergenic |
| AAGCTCTCTTTCTCTTCTTG+TGG | 0.410113 | 4_3:+66313745 | None:intergenic |
| AGATGAATGGCTTGCTATGA+TGG | 0.415307 | 4_3:-66313422 | Msa0656950:CDS |
| GTGTATGACTTAAAATTAAA+GGG | 0.419239 | 4_3:-66307479 | Msa0656950:CDS |
| GTTCGGATCCTTCTCGAACT+CGG | 0.421086 | 4_3:+66307765 | None:intergenic |
| TCGACAAACTGTCACGGTTG+TGG | 0.425168 | 4_3:+66307742 | None:intergenic |
| GATTTCATTGGGCCTTAGCT+GGG | 0.427691 | 4_3:-66308119 | Msa0656950:CDS |
| CAGATTCCGATCGCCGGAAT+CGG | 0.429202 | 4_3:+66313512 | None:intergenic |
| GGTTATTAAGCTTATAAGAA+AGG | 0.429802 | 4_3:+66313783 | None:intergenic |
| TATATCATTGCCCCTACCAT+TGG | 0.435218 | 4_3:+66307712 | None:intergenic |
| GGTAGGGGCAATGATATAAT+GGG | 0.436937 | 4_3:-66307707 | Msa0656950:CDS |
| TATATTGCCAGAAGATGAAA+TGG | 0.440744 | 4_3:-66307351 | Msa0656950:CDS |
| ATTGCACATAAAGTTTCAAA+TGG | 0.442525 | 4_3:+66307806 | None:intergenic |
| CACATAAAGTTTCAAATGGA+GGG | 0.442722 | 4_3:+66307810 | None:intergenic |
| AGCTCTCTTTCTCTTCTTGT+GGG | 0.443480 | 4_3:+66313746 | None:intergenic |
| CGACAAACTGTCACGGTTGT+GGG | 0.445047 | 4_3:+66307743 | None:intergenic |
| TCGTTTCTCAACAAGTCATT+GGG | 0.447263 | 4_3:-66313378 | Msa0656950:CDS |
| GGAACCAGCTACATTTAAAC+GGG | 0.448779 | 4_3:-66307960 | Msa0656950:CDS |
| CCTAAGGTGAATGATATTGA+TGG | 0.452041 | 4_3:-66307389 | Msa0656950:CDS |
| TTCGGATCCTTCTCGAACTC+GGG | 0.459230 | 4_3:+66307766 | None:intergenic |
| CCTCAACCTTGCATATCAAT+TGG | 0.459576 | 4_3:+66307678 | None:intergenic |
| TAAGTGTGGTGGGATTTCAT+TGG | 0.465833 | 4_3:-66308131 | Msa0656950:CDS |
| GCTAGCATGCTTGTGGATCA+AGG | 0.466138 | 4_3:-66307611 | Msa0656950:CDS |
| TTAGCTGGGCCCATGTTATG+GGG | 0.467497 | 4_3:-66308105 | Msa0656950:CDS |
| AAATCCGAGCTTAATGTGTA+TGG | 0.468103 | 4_3:-66307320 | Msa0656950:CDS |
| ATGGCCAGGTCCAAGCCGTT+CGG | 0.469048 | 4_3:+66313655 | None:intergenic |
| CTTCAAGGGGTGGGAGATGA+AGG | 0.469388 | 4_3:-66307428 | Msa0656950:CDS |
| CCATCAATATCATTCACCTT+AGG | 0.474137 | 4_3:+66307389 | None:intergenic |
| GGGATCCAATGATCACCAAC+CGG | 0.475921 | 4_3:+66307932 | None:intergenic |
| GATAGTGAAGTTTCATGGCC+AGG | 0.479627 | 4_3:+66313641 | None:intergenic |
| GAAACTTCACTATCTTAAAG+TGG | 0.479693 | 4_3:-66313632 | Msa0656950:CDS |
| GACGGATCTTGGAATGTTGA+AGG | 0.485139 | 4_3:+66308012 | None:intergenic |
| AACAATTAAGAAAATAAAAG+AGG | 0.487357 | 4_3:-66313575 | Msa0656950:CDS |
| ATTTGAGAGTATCTTCAGTT+GGG | 0.488025 | 4_3:-66313714 | Msa0656950:CDS |
| GGAGGGGTTTGTTCAACACT+TGG | 0.494342 | 4_3:+66307827 | None:intergenic |
| TACATTTAAACGGGTTGACC+CGG | 0.497184 | 4_3:-66307951 | Msa0656950:CDS |
| CCATAACATGGGCCCAGCTA+AGG | 0.499246 | 4_3:+66308107 | None:intergenic |
| TTAACGGTTTGTTTATGGCA+TGG | 0.501658 | 4_3:-66307164 | Msa0656950:three_prime_UTR |
| TCAACCCGTTTAAATGTAGC+TGG | 0.502437 | 4_3:+66307956 | None:intergenic |
| AATGGCTTGCTATGATGGAT+TGG | 0.507896 | 4_3:-66313417 | Msa0656950:CDS |
| TTGCGGCCGATTCCGGCGAT+CGG | 0.508580 | 4_3:-66313518 | Msa0656950:CDS |
| GCACCAAAACTCTAGATGAA+TGG | 0.514485 | 4_3:-66313435 | Msa0656950:CDS |
| TTGATATGCAAGGTTGAGGC+AGG | 0.515574 | 4_3:-66307674 | Msa0656950:CDS |
| AGAGTATCTTCAGTTGGGCC+AGG | 0.515864 | 4_3:-66313709 | Msa0656950:CDS |
| TCGACCCGACCCCAATGGTA+GGG | 0.517340 | 4_3:-66307723 | Msa0656950:CDS |
| ATTGCCCCTACCATTGGGGT+CGG | 0.519926 | 4_3:+66307718 | None:intergenic |
| TCCGACCCAGTGGCATGACC+TGG | 0.523816 | 4_3:+66313691 | None:intergenic |
| TTGCCCCTACCATTGGGGTC+GGG | 0.524581 | 4_3:+66307719 | None:intergenic |
| CAATCCGAACGGCTTGGACC+TGG | 0.524702 | 4_3:-66313659 | Msa0656950:CDS |
| GCACATAAAGTTTCAAATGG+AGG | 0.536084 | 4_3:+66307809 | None:intergenic |
| GTCGACCAGATTCCGATCGC+CGG | 0.538465 | 4_3:+66313506 | None:intergenic |
| TACTACACACTTCAAGGGGT+GGG | 0.539191 | 4_3:-66307437 | Msa0656950:CDS |
| GATCGCCGGAATCGGCCGCA+AGG | 0.546043 | 4_3:+66313520 | None:intergenic |
| TTGTTTACTACACACTTCAA+GGG | 0.547045 | 4_3:-66307442 | Msa0656950:CDS |
| TAACTCAATTTAAGTGTGGT+GGG | 0.547840 | 4_3:-66308141 | Msa0656950:CDS |
| TTGGGCCAGGTCATGCCACT+GGG | 0.547919 | 4_3:-66313696 | Msa0656950:CDS |
| GTGTATGGTATCATGTTTGA+GGG | 0.549776 | 4_3:-66307305 | Msa0656950:CDS |
| CCATAAACAAACCGTTAATG+AGG | 0.550225 | 4_3:+66307169 | None:intergenic |
| ATCGCCGGAATCGGCCGCAA+GGG | 0.554171 | 4_3:+66313521 | None:intergenic |
| CGACCCGACCCCAATGGTAG+GGG | 0.554339 | 4_3:-66307722 | Msa0656950:CDS |
| GATTTGAGAGTATCTTCAGT+TGG | 0.555245 | 4_3:-66313715 | Msa0656950:CDS |
| ACATAAAGTTTCAAATGGAG+GGG | 0.558070 | 4_3:+66307811 | None:intergenic |
| GCCAGGTCATGCCACTGGGT+CGG | 0.558921 | 4_3:-66313692 | Msa0656950:CDS |
| GTTAGTTGATTGTAAATTTG+GGG | 0.560723 | 4_3:-66307192 | Msa0656950:three_prime_UTR |
| GTAACTCAATTTAAGTGTGG+TGG | 0.561280 | 4_3:-66308142 | Msa0656950:CDS |
| TGTGTATGGTATCATGTTTG+AGG | 0.561998 | 4_3:-66307306 | Msa0656950:CDS |
| AAAATTAAGGGGTGTTGAGA+CGG | 0.562724 | 4_3:+66307994 | None:intergenic |
| TTTGACTCTGAGGCCGCACA+AGG | 0.563433 | 4_3:-66313601 | Msa0656950:CDS |
| GATTATTATTTCATCCCTTG+CGG | 0.564108 | 4_3:-66313535 | Msa0656950:CDS |
| CTTAATTGTTAGGCCTTGTG+CGG | 0.564584 | 4_3:+66313588 | None:intergenic |
| TAGCTGGGCCCATGTTATGG+GGG | 0.565629 | 4_3:-66308104 | Msa0656950:CDS |
| GTCGACCCGACCCCAATGGT+AGG | 0.572588 | 4_3:-66307724 | Msa0656950:CDS |
| CCAATTGATATGCAAGGTTG+AGG | 0.574004 | 4_3:-66307678 | Msa0656950:CDS |
| TCAGATTTCATCAACTTATG+GGG | 0.579204 | 4_3:-66308067 | Msa0656950:CDS |
| CAGGTAACTCAATTTAAGTG+TGG | 0.580586 | 4_3:-66308145 | Msa0656950:CDS |
| TCATTAGGGAGCTAGTTATG+TGG | 0.584575 | 4_3:+66307876 | None:intergenic |
| ATGAAATCTGAAGCTGAATG+TGG | 0.593595 | 4_3:+66308079 | None:intergenic |
| TTTAAACGGGTTGACCCGGT+TGG | 0.594712 | 4_3:-66307947 | Msa0656950:CDS |
| AGAACCTGCAACAAAATGGA+AGG | 0.600774 | 4_3:+66313337 | None:intergenic |
| GGATCCAATGATCACCAACC+GGG | 0.601111 | 4_3:+66307933 | None:intergenic |
| TTCGTCAAGTGCAATGATTG+TGG | 0.601190 | 4_3:-66313481 | Msa0656950:CDS |
| CAATCATTGCACTTGACGAA+GGG | 0.602139 | 4_3:+66313484 | None:intergenic |
| TTACTACACACTTCAAGGGG+TGG | 0.606615 | 4_3:-66307438 | Msa0656950:CDS |
| GGTTTACTTCTTTGACTCTG+AGG | 0.609658 | 4_3:-66313611 | Msa0656950:CDS |
| ACGGATCTTGGAATGTTGAA+GGG | 0.614481 | 4_3:+66308013 | None:intergenic |
| ACAATCATTGCACTTGACGA+AGG | 0.615639 | 4_3:+66313483 | None:intergenic |
| TGTTTACTACACACTTCAAG+GGG | 0.616578 | 4_3:-66307441 | Msa0656950:CDS |
| TAGGGAGCTAGTTATGTGGA+AGG | 0.620633 | 4_3:+66307880 | None:intergenic |
| GTTTGTCGACCCGACCCCAA+TGG | 0.621503 | 4_3:-66307728 | Msa0656950:CDS |
| TGCATAGCCCGAGTTCGAGA+AGG | 0.625715 | 4_3:-66307773 | Msa0656950:CDS |
| TATCATTGCCCCTACCATTG+GGG | 0.626014 | 4_3:+66307714 | None:intergenic |
| GATACCATACACATTAAGCT+CGG | 0.633143 | 4_3:+66307316 | None:intergenic |
| GAAACGAGCAACTTGTAGGA+AGG | 0.635824 | 4_3:+66313394 | None:intergenic |
| GTCGGGTCGACAAACTGTCA+CGG | 0.641477 | 4_3:+66307736 | None:intergenic |
| AAATGACCAATTGATATGCA+AGG | 0.646231 | 4_3:-66307684 | Msa0656950:CDS |
| TTGTGGAGCAAGAACCATTG+AGG | 0.669130 | 4_3:-66313464 | Msa0656950:CDS |
| AACTTGCAAGAACAAATTTG+GGG | 0.669322 | 4_3:-66307851 | Msa0656950:CDS |
| TGAAATCTGAAGCTGAATGT+GGG | 0.702970 | 4_3:+66308080 | None:intergenic |
| AATTTGTTGAAAGATACAAG+AGG | 0.703489 | 4_3:+66313812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATAATATTTTTTTTA+AGG | + | chr4_3:66311244-66311263 | None:intergenic | 0.0% |
| !! | TATTAATTATTAGAGTTTAA+TGG | - | chr4_3:66307827-66307846 | Msa0656950:CDS | 10.0% |
| !!! | CTCAAATTAAATTTTTAATT+TGG | - | chr4_3:66308621-66308640 | Msa0656950:intron | 10.0% |
| !!! | AATTAAATTTTTAATTTGGA+AGG | - | chr4_3:66308625-66308644 | Msa0656950:intron | 10.0% |
| !!! | TTTTTATTTTTATTTTACAG+AGG | + | chr4_3:66308662-66308681 | None:intergenic | 10.0% |
| !!! | TAAATATTTTTTACAAATTC+AGG | - | chr4_3:66308787-66308806 | Msa0656950:intron | 10.0% |
| !!! | AAATATTTTTTACAAATTCA+GGG | - | chr4_3:66308788-66308807 | Msa0656950:intron | 10.0% |
| !!! | AATCTATATTTTTTATTGAT+AGG | - | chr4_3:66308844-66308863 | Msa0656950:intron | 10.0% |
| !! | ATAAAAAGTAAATCATTTAT+TGG | - | chr4_3:66309095-66309114 | Msa0656950:intron | 10.0% |
| !!! | AATACATTGATTTTTTTTTT+TGG | + | chr4_3:66309326-66309345 | None:intergenic | 10.0% |
| !!! | ATTTGATATGAAATTTTTTT+AGG | + | chr4_3:66309744-66309763 | None:intergenic | 10.0% |
| !!! | ACTTTTTAAAAGTTAAAAAA+TGG | - | chr4_3:66310714-66310733 | Msa0656950:intron | 10.0% |
| !! | TAATAAAAACTTACTATTAA+AGG | + | chr4_3:66310864-66310883 | None:intergenic | 10.0% |
| !! | AAAATGAAGAAAATAAAAAA+TGG | - | chr4_3:66311136-66311155 | Msa0656950:intron | 10.0% |
| !!! | TTAAATGTTTTAATTTTTTC+AGG | - | chr4_3:66311387-66311406 | Msa0656950:intron | 10.0% |
| !!! | TATTAAACTTTTTTTTTTGA+AGG | - | chr4_3:66311701-66311720 | Msa0656950:intron | 10.0% |
| !! | AAAATATTAAACATATTTAG+AGG | - | chr4_3:66311724-66311743 | Msa0656950:intron | 10.0% |
| !! | AAATATTAAACATATTTAGA+GGG | - | chr4_3:66311725-66311744 | Msa0656950:intron | 10.0% |
| !!! | TTTTTACTTAAATTTTGTTA+AGG | + | chr4_3:66312118-66312137 | None:intergenic | 10.0% |
| !!! | CTTTTATTTTCTTAATTGTT+AGG | + | chr4_3:66307361-66307380 | None:intergenic | 15.0% |
| !! | AACAATTAAGAAAATAAAAG+AGG | - | chr4_3:66307361-66307380 | Msa0656950:CDS | 15.0% |
| !! | ACTAAAAATATTTATTGATG+TGG | - | chr4_3:66307917-66307936 | Msa0656950:CDS | 15.0% |
| !!! | GTAATTTTAAATGTTTTGAT+TGG | - | chr4_3:66307939-66307958 | Msa0656950:CDS | 15.0% |
| !!! | CATATTTTAAGCTAAAATAT+TGG | + | chr4_3:66308176-66308195 | None:intergenic | 15.0% |
| !!! | CAATATTTTAGCTTAAAATA+TGG | - | chr4_3:66308174-66308193 | Msa0656950:intron | 15.0% |
| !! | AGAATTCTTAAAAATTGTTT+CGG | - | chr4_3:66309390-66309409 | Msa0656950:intron | 15.0% |
| !!! | GTTGAATTGAATTTTAAATT+AGG | + | chr4_3:66309515-66309534 | None:intergenic | 15.0% |
| !! | AACACTTTAATTAATATGAA+TGG | - | chr4_3:66309893-66309912 | Msa0656950:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr4_3:66310176-66310195 | Msa0656950:intron | 15.0% |
| !!! | AATAAATAAGGGTATAATAA+TGG | - | chr4_3:66310490-66310509 | Msa0656950:intron | 15.0% |
| !! | AAAAATAATAAATGTTGCAT+TGG | - | chr4_3:66310516-66310535 | Msa0656950:intron | 15.0% |
| !!! | ATTTTGAGAAAAAGAAAAAA+TGG | - | chr4_3:66310557-66310576 | Msa0656950:intron | 15.0% |
| !! | TTAATAAAACTTACTATTAC+AGG | - | chr4_3:66311010-66311029 | Msa0656950:intron | 15.0% |
| !!! | TTTGTTATAATTGAATTAGA+TGG | - | chr4_3:66311939-66311958 | Msa0656950:intron | 15.0% |
| !!! | TTTTGATTAGTTTTTATAGA+AGG | - | chr4_3:66312485-66312504 | Msa0656950:intron | 15.0% |
| !!! | TTTGATTAGTTTTTATAGAA+GGG | - | chr4_3:66312486-66312505 | Msa0656950:intron | 15.0% |
| !!! | TTTTAACCAAAATTCACTTT+TGG | + | chr4_3:66308035-66308054 | None:intergenic | 20.0% |
| !!! | TATTTTAGCTTAAAATATGG+AGG | - | chr4_3:66308177-66308196 | Msa0656950:intron | 20.0% |
| !!! | ATTTTAGCTTAAAATATGGA+GGG | - | chr4_3:66308178-66308197 | Msa0656950:intron | 20.0% |
| !!! | ATTTGAAAATCTGATAGTTT+TGG | + | chr4_3:66308205-66308224 | None:intergenic | 20.0% |
| !! | CTGAAAATAGTTTATGTAAA+TGG | + | chr4_3:66308727-66308746 | None:intergenic | 20.0% |
| !!! | TTTTTTTGGTTACATTAAAG+AGG | + | chr4_3:66309312-66309331 | None:intergenic | 20.0% |
| !!! | CACTTTTAAACTCTAAATTT+TGG | + | chr4_3:66309577-66309596 | None:intergenic | 20.0% |
| !!! | CAAAATTTAGAGTTTAAAAG+TGG | - | chr4_3:66309575-66309594 | Msa0656950:intron | 20.0% |
| !! | AAAATTCCATAACTACAATT+AGG | + | chr4_3:66309682-66309701 | None:intergenic | 20.0% |
| !!! | TTGTAGTTATGGAATTTTAT+TGG | - | chr4_3:66309684-66309703 | Msa0656950:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr4_3:66310143-66310162 | Msa0656950:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr4_3:66310186-66310205 | None:intergenic | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | - | chr4_3:66310395-66310414 | Msa0656950:intron | 20.0% |
| !! | TGGATGAAATTCAATAAATA+AGG | - | chr4_3:66310478-66310497 | Msa0656950:intron | 20.0% |
| !! | GGATGAAATTCAATAAATAA+GGG | - | chr4_3:66310479-66310498 | Msa0656950:intron | 20.0% |
| !!! | CATTTTCCTTTAGTTTAAAA+GGG | + | chr4_3:66310809-66310828 | None:intergenic | 20.0% |
| !!! | ACATTTTCCTTTAGTTTAAA+AGG | + | chr4_3:66310810-66310829 | None:intergenic | 20.0% |
| !! | AGTGATTAATCTCTAAATTT+AGG | + | chr4_3:66310944-66310963 | None:intergenic | 20.0% |
| !! | ATTTAAACCTTGATAAATGT+GGG | + | chr4_3:66311194-66311213 | None:intergenic | 20.0% |
| !! | AATTTAAACCTTGATAAATG+TGG | + | chr4_3:66311195-66311214 | None:intergenic | 20.0% |
| !!! | GCATCTCAATTTTTTTTAAA+AGG | + | chr4_3:66311298-66311317 | None:intergenic | 20.0% |
| !! | TTGAAACTAGAAGAAAATTA+TGG | + | chr4_3:66311475-66311494 | None:intergenic | 20.0% |
| !!! | TACTTAAATTTTGTTAAGGA+GGG | + | chr4_3:66312114-66312133 | None:intergenic | 20.0% |
| !!! | TTACTTAAATTTTGTTAAGG+AGG | + | chr4_3:66312115-66312134 | None:intergenic | 20.0% |
| !! | ATACAAAAACTGTATTGTAT+TGG | - | chr4_3:66312592-66312611 | Msa0656950:intron | 20.0% |
| !!! | TTGAGTACTTATATTCTTTT+AGG | - | chr4_3:66312625-66312644 | Msa0656950:intron | 20.0% |
| !! | AAACTTTATGTGCAATAATT+TGG | - | chr4_3:66313137-66313156 | Msa0656950:intron | 20.0% |
| !! | TGATGAAAGAAATCAAATTA+TGG | - | chr4_3:66313351-66313370 | Msa0656950:CDS | 20.0% |
| !! | ATATAGTAGAAAAAGATCAA+GGG | - | chr4_3:66313374-66313393 | Msa0656950:CDS | 20.0% |
| !! | TGTGTATGACTTAAAATTAA+AGG | - | chr4_3:66313456-66313475 | Msa0656950:CDS | 20.0% |
| !! | GTGTATGACTTAAAATTAAA+GGG | - | chr4_3:66313457-66313476 | Msa0656950:CDS | 20.0% |
| !! | ATGTTAGTTGATTGTAAATT+TGG | - | chr4_3:66313742-66313761 | Msa0656950:CDS | 20.0% |
| !! | TGTTAGTTGATTGTAAATTT+GGG | - | chr4_3:66313743-66313762 | Msa0656950:CDS | 20.0% |
| !!! | AATTTGTTGAAAGATACAAG+AGG | + | chr4_3:66307127-66307146 | None:intergenic | 25.0% |
| ! | GGTTATTAAGCTTATAAGAA+AGG | + | chr4_3:66307156-66307175 | None:intergenic | 25.0% |
| ! | AAGCTTAATAACCACTAATA+TGG | - | chr4_3:66307163-66307182 | Msa0656950:three_prime_UTR | 25.0% |
| !! | TTTAAGATAGTGAAGTTTCA+TGG | + | chr4_3:66307303-66307322 | None:intergenic | 25.0% |
| ! | ATAATTAATATCACTCCCTA+AGG | + | chr4_3:66307817-66307836 | None:intergenic | 25.0% |
| ! | TTATTAGAGTTTAATGGTAG+TGG | - | chr4_3:66307833-66307852 | Msa0656950:CDS | 25.0% |
| ! | TATTAGAGTTTAATGGTAGT+GGG | - | chr4_3:66307834-66307853 | Msa0656950:CDS | 25.0% |
| ! | GCGTAATAATAAGAGTTTAA+TGG | + | chr4_3:66308003-66308022 | None:intergenic | 25.0% |
| !!! | ATGTTACCATTTTGTTGATT+TGG | + | chr4_3:66308235-66308254 | None:intergenic | 25.0% |
| ! | AATCAACAAAATGGTAACAT+TGG | - | chr4_3:66308235-66308254 | Msa0656950:intron | 25.0% |
| ! | AATTAACTTCATCGTCTTTA+AGG | - | chr4_3:66308331-66308350 | Msa0656950:intron | 25.0% |
| !!! | AGGTTTACACAATGTTTTTT+TGG | + | chr4_3:66308433-66308452 | None:intergenic | 25.0% |
| ! | TAATGAATTCAAAGTTACAG+AGG | + | chr4_3:66308696-66308715 | None:intergenic | 25.0% |
| !!! | AGACATTTTAACACTTTACA+AGG | - | chr4_3:66308745-66308764 | Msa0656950:intron | 25.0% |
| !! | ATAAATGAGATTGATTTCGA+CGG | - | chr4_3:66308933-66308952 | Msa0656950:intron | 25.0% |
| !!! | AATGGATTGGGAAAATAATT+GGG | + | chr4_3:66309144-66309163 | None:intergenic | 25.0% |
| !!! | AAATGGATTGGGAAAATAAT+TGG | + | chr4_3:66309145-66309164 | None:intergenic | 25.0% |
| ! | TAAAGTTCTTAAAAGATGTC+TGG | + | chr4_3:66309231-66309250 | None:intergenic | 25.0% |
| ! | TGAATGTAGTAGTACTATAA+TGG | + | chr4_3:66309457-66309476 | None:intergenic | 25.0% |
| !!! | AACAGTTAATTTGTTGAACT+TGG | - | chr4_3:66309532-66309551 | Msa0656950:intron | 25.0% |
| !!! | ACGATATTCCTTTTTTTTTG+TGG | - | chr4_3:66309610-66309629 | Msa0656950:intron | 25.0% |
| !!! | ATATTCCTTTTTTTTTGTGG+TGG | - | chr4_3:66309613-66309632 | Msa0656950:intron | 25.0% |
| ! | GATATTCCTAATTGTAGTTA+TGG | - | chr4_3:66309673-66309692 | Msa0656950:intron | 25.0% |
| ! | GGGAACTATTAATAAGAAAT+TGG | + | chr4_3:66309826-66309845 | None:intergenic | 25.0% |
| ! | TGAACTTACTTAATTGGATA+GGG | + | chr4_3:66309848-66309867 | None:intergenic | 25.0% |
| ! | ATTCTATGATGACAAATTGT+TGG | + | chr4_3:66309963-66309982 | None:intergenic | 25.0% |
| ! | AATAGTCTCACCAAATTAAA+TGG | - | chr4_3:66309985-66310004 | Msa0656950:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | + | chr4_3:66310447-66310466 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr4_3:66310448-66310467 | None:intergenic | 25.0% |
| ! | AAGAGACAATTATTATGAGA+CGG | - | chr4_3:66310582-66310601 | Msa0656950:intron | 25.0% |
| !!! | AAAATACTAAGAGTGTCTTT+AGG | - | chr4_3:66310627-66310646 | Msa0656950:intron | 25.0% |
| !!! | AAATACTAAGAGTGTCTTTA+GGG | - | chr4_3:66310628-66310647 | Msa0656950:intron | 25.0% |
| ! | AAAAATGTGGTATTGTGAAA+TGG | - | chr4_3:66310673-66310692 | Msa0656950:intron | 25.0% |
| ! | AAAATGTTAACGAGTATCTT+TGG | - | chr4_3:66310823-66310842 | Msa0656950:intron | 25.0% |
| ! | AAATGTTAACGAGTATCTTT+GGG | - | chr4_3:66310824-66310843 | Msa0656950:intron | 25.0% |
| ! | TTGAAAACACTCATTAACAA+AGG | + | chr4_3:66310906-66310925 | None:intergenic | 25.0% |
| ! | AATGTTAACAAGTTCTTTCT+GGG | + | chr4_3:66311049-66311068 | None:intergenic | 25.0% |
| ! | AAATGTTAACAAGTTCTTTC+TGG | + | chr4_3:66311050-66311069 | None:intergenic | 25.0% |
| ! | TACAATAATGTGATACTTGA+TGG | + | chr4_3:66311087-66311106 | None:intergenic | 25.0% |
| ! | GAAGAAAATAAAAAATGGAG+AGG | - | chr4_3:66311141-66311160 | Msa0656950:intron | 25.0% |
| !!! | ATTATGGCAGTTTTTAAAAC+AGG | + | chr4_3:66311459-66311478 | None:intergenic | 25.0% |
| ! | AACTAGGAACAAAATATTGT+CGG | - | chr4_3:66311512-66311531 | Msa0656950:intron | 25.0% |
| ! | AGCAAAATTTCAACAAAGTT+TGG | + | chr4_3:66311581-66311600 | None:intergenic | 25.0% |
| ! | AGAAATTTAAAGAATCTCAG+TGG | + | chr4_3:66311632-66311651 | None:intergenic | 25.0% |
| ! | AGCATTTCTCATATATGAAT+AGG | - | chr4_3:66311754-66311773 | Msa0656950:intron | 25.0% |
| ! | ATTAGATTGAAGAAAATACG+TGG | - | chr4_3:66312351-66312370 | Msa0656950:intron | 25.0% |
| ! | TGATCCATCAATTAATGTTA+GGG | - | chr4_3:66312441-66312460 | Msa0656950:intron | 25.0% |
| ! | ACTTATGAATATTCAATGCA+TGG | + | chr4_3:66312760-66312779 | None:intergenic | 25.0% |
| ! | ATTGAATATTCATAAGTCGT+TGG | - | chr4_3:66312763-66312782 | Msa0656950:intron | 25.0% |
| ! | TTCAGATTTCATCAACTTAT+GGG | - | chr4_3:66312868-66312887 | Msa0656950:intron | 25.0% |
| ! | ATTGCACATAAAGTTTCAAA+TGG | + | chr4_3:66313133-66313152 | None:intergenic | 25.0% |
| !!! | TGACACTAGTTTGAAAATTT+TGG | - | chr4_3:66313303-66313322 | Msa0656950:intron | 25.0% |
| ! | GATATAGTAGAAAAAGATCA+AGG | - | chr4_3:66313373-66313392 | Msa0656950:CDS | 25.0% |
| ! | TATAGTAGAAAAAGATCAAG+GGG | - | chr4_3:66313375-66313394 | Msa0656950:CDS | 25.0% |
| ! | TAAGTCAAGAAATGTCAAAT+TGG | + | chr4_3:66313425-66313444 | None:intergenic | 25.0% |
| ! | GTTAGTTGATTGTAAATTTG+GGG | - | chr4_3:66313744-66313763 | Msa0656950:CDS | 25.0% |
| !! | ATTTGAGAGTATCTTCAGTT+GGG | - | chr4_3:66307222-66307241 | Msa0656950:three_prime_UTR | 30.0% |
| GAAACTTCACTATCTTAAAG+TGG | - | chr4_3:66307304-66307323 | Msa0656950:CDS | 30.0% | |
| GATTATTATTTCATCCCTTG+CGG | - | chr4_3:66307401-66307420 | Msa0656950:CDS | 30.0% | |
| GAAGGAGAAAATGATAATTC+TGG | + | chr4_3:66307584-66307603 | None:intergenic | 30.0% | |
| TTAAAGAACCTGCAACAAAA+TGG | + | chr4_3:66307606-66307625 | None:intergenic | 30.0% | |
| ! | TTGTACGTGCAAAATTGTTT+TGG | + | chr4_3:66307868-66307887 | None:intergenic | 30.0% |
| ! | TTCTCTCCAAAAGTGAATTT+TGG | - | chr4_3:66308026-66308045 | Msa0656950:CDS | 30.0% |
| AGAAGACCAAATCAACAAAA+TGG | - | chr4_3:66308226-66308245 | Msa0656950:intron | 30.0% | |
| !!! | CCTTTCACTCTCATTTTTTA+TGG | + | chr4_3:66308581-66308600 | None:intergenic | 30.0% |
| CCATAAAAAATGAGAGTGAA+AGG | - | chr4_3:66308578-66308597 | Msa0656950:intron | 30.0% | |
| AGAGTGAAAGGAAAGTTAAA+AGG | - | chr4_3:66308590-66308609 | Msa0656950:intron | 30.0% | |
| GAGTGAAAGGAAAGTTAAAA+GGG | - | chr4_3:66308591-66308610 | Msa0656950:intron | 30.0% | |
| ATAGACTCTGTAATTTGAGT+GGG | + | chr4_3:66308884-66308903 | None:intergenic | 30.0% | |
| AATAGACTCTGTAATTTGAG+TGG | + | chr4_3:66308885-66308904 | None:intergenic | 30.0% | |
| TTACACTCTTATTAACCGAA+GGG | + | chr4_3:66309000-66309019 | None:intergenic | 30.0% | |
| ATTACACTCTTATTAACCGA+AGG | + | chr4_3:66309001-66309020 | None:intergenic | 30.0% | |
| ! | AGTAAATCATTTATTGGCCT+TGG | - | chr4_3:66309101-66309120 | Msa0656950:intron | 30.0% |
| ! | CATAAAAAGCGAAATGGATT+GGG | + | chr4_3:66309156-66309175 | None:intergenic | 30.0% |
| TTCTACCATAAAAAGCGAAA+TGG | + | chr4_3:66309162-66309181 | None:intergenic | 30.0% | |
| TGTAGTAGTACTATAATGGT+AGG | + | chr4_3:66309453-66309472 | None:intergenic | 30.0% | |
| GTCAAAATATATGCAAGATC+CGG | + | chr4_3:66309653-66309672 | None:intergenic | 30.0% | |
| AAGAAATTGGTTGCAAATAC+CGG | + | chr4_3:66309813-66309832 | None:intergenic | 30.0% | |
| AACTTACTTAATTGGATAGG+GGG | + | chr4_3:66309846-66309865 | None:intergenic | 30.0% | |
| GAACTTACTTAATTGGATAG+GGG | + | chr4_3:66309847-66309866 | None:intergenic | 30.0% | |
| GTGAACTTACTTAATTGGAT+AGG | + | chr4_3:66309849-66309868 | None:intergenic | 30.0% | |
| GTTAGGTGAACTTACTTAAT+TGG | + | chr4_3:66309854-66309873 | None:intergenic | 30.0% | |
| TACATGACTTCTGTATGATT+TGG | + | chr4_3:66309925-66309944 | None:intergenic | 30.0% | |
| GGGTACTATACCATTTAATT+TGG | + | chr4_3:66309998-66310017 | None:intergenic | 30.0% | |
| GAAAGAAACTCCTAACTTTA+AGG | + | chr4_3:66310024-66310043 | None:intergenic | 30.0% | |
| ! | GAGTATTATTTAGAGTAGGA+GGG | + | chr4_3:66310068-66310087 | None:intergenic | 30.0% |
| ! | GATGGAGTATTATTTAGAGT+AGG | + | chr4_3:66310072-66310091 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr4_3:66310094-66310113 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr4_3:66310095-66310114 | Msa0656950:intron | 30.0% |
| ! | AGTCGTTTAAGGTTTATACA+CGG | - | chr4_3:66310358-66310377 | Msa0656950:intron | 30.0% |
| CCCTTATTAATTGTAGTTAG+TGG | - | chr4_3:66310444-66310463 | Msa0656950:intron | 30.0% | |
| AGAAGACAGACATAAAAATG+TGG | - | chr4_3:66310660-66310679 | Msa0656950:intron | 30.0% | |
| TGTGAAATGGTTAAAAGTGA+TGG | - | chr4_3:66310686-66310705 | Msa0656950:intron | 30.0% | |
| ! | GCAATACCCTTTTAAACTAA+AGG | - | chr4_3:66310800-66310819 | Msa0656950:intron | 30.0% |
| CTAGTTTAGTTGCTATAACA+TGG | + | chr4_3:66311498-66311517 | None:intergenic | 30.0% | |
| CATGTTATAGCAACTAAACT+AGG | - | chr4_3:66311496-66311515 | Msa0656950:intron | 30.0% | |
| !! | TAATTATCCCAATTTGTTGC+TGG | - | chr4_3:66311539-66311558 | Msa0656950:intron | 30.0% |
| CATCTCTCATAAAAATGACA+AGG | + | chr4_3:66311859-66311878 | None:intergenic | 30.0% | |
| GGATAAGATGTACATAAGTA+CGG | + | chr4_3:66311994-66312013 | None:intergenic | 30.0% | |
| CACAAAAAGACAAAAAAGAG+AGG | + | chr4_3:66312015-66312034 | None:intergenic | 30.0% | |
| !! | TAAGAAAACTGAAAAGTGTC+AGG | + | chr4_3:66312077-66312096 | None:intergenic | 30.0% |
| GTGATCCATCAATTAATGTT+AGG | - | chr4_3:66312440-66312459 | Msa0656950:intron | 30.0% | |
| CTTTCCCTAACATTAATTGA+TGG | + | chr4_3:66312448-66312467 | None:intergenic | 30.0% | |
| TAACTCAATTTAAGTGTGGT+GGG | - | chr4_3:66312795-66312814 | Msa0656950:intron | 30.0% | |
| CTTCAGATTTCATCAACTTA+TGG | - | chr4_3:66312867-66312886 | Msa0656950:intron | 30.0% | |
| TCAGATTTCATCAACTTATG+GGG | - | chr4_3:66312869-66312888 | Msa0656950:intron | 30.0% | |
| ! | TTTTAGGCTCAAATTGTTCA+AGG | + | chr4_3:66312900-66312919 | None:intergenic | 30.0% |
| ! | TTTTCGGATCCAAAATTAAG+GGG | + | chr4_3:66312956-66312975 | None:intergenic | 30.0% |
| ! | CTTTTCGGATCCAAAATTAA+GGG | + | chr4_3:66312957-66312976 | None:intergenic | 30.0% |
| !!! | TGTGTCCATTTTTTTGTTGT+TGG | + | chr4_3:66313032-66313051 | None:intergenic | 30.0% |
| TTCTTGCAAGTTGTTCATTA+GGG | + | chr4_3:66313077-66313096 | None:intergenic | 30.0% | |
| ACAACTTGCAAGAACAAATT+TGG | - | chr4_3:66313083-66313102 | Msa0656950:intron | 30.0% | |
| CAACTTGCAAGAACAAATTT+GGG | - | chr4_3:66313084-66313103 | Msa0656950:intron | 30.0% | |
| AACTTGCAAGAACAAATTTG+GGG | - | chr4_3:66313085-66313104 | Msa0656950:intron | 30.0% | |
| ACATAAAGTTTCAAATGGAG+GGG | + | chr4_3:66313128-66313147 | None:intergenic | 30.0% | |
| CACATAAAGTTTCAAATGGA+GGG | + | chr4_3:66313129-66313148 | None:intergenic | 30.0% | |
| AAATGACCAATTGATATGCA+AGG | - | chr4_3:66313252-66313271 | Msa0656950:intron | 30.0% | |
| !!! | GTGACTGATTTTTTTGTCTA+TGG | - | chr4_3:66313397-66313416 | Msa0656950:CDS | 30.0% |
| AGTGTGTAGTAAACAAATCT+TGG | + | chr4_3:66313490-66313509 | None:intergenic | 30.0% | |
| TTTGTTTACTACACACTTCA+AGG | - | chr4_3:66313493-66313512 | Msa0656950:CDS | 30.0% | |
| TTGTTTACTACACACTTCAA+GGG | - | chr4_3:66313494-66313513 | Msa0656950:CDS | 30.0% | |
| TTCATCTTCTGGCAATATAA+TGG | + | chr4_3:66313584-66313603 | None:intergenic | 30.0% | |
| TATATTGCCAGAAGATGAAA+TGG | - | chr4_3:66313585-66313604 | Msa0656950:CDS | 30.0% | |
| ! | AGTTTTACCATTTCATCTTC+TGG | + | chr4_3:66313595-66313614 | None:intergenic | 30.0% |
| ! | TGAGGGTGATTTTTAATGAT+TGG | - | chr4_3:66313648-66313667 | Msa0656950:CDS | 30.0% |
| TTGTGGGAAAACCATATTAG+TGG | + | chr4_3:66307177-66307196 | None:intergenic | 35.0% | |
| !! | GATTTGAGAGTATCTTCAGT+TGG | - | chr4_3:66307221-66307240 | Msa0656950:three_prime_UTR | 35.0% |
| ! | GATGTTTTTCACAATCCGAA+CGG | - | chr4_3:66307266-66307285 | Msa0656950:three_prime_UTR | 35.0% |
| !! | ATCTAGAGTTTTGGTGCAAT+TGG | + | chr4_3:66307498-66307517 | None:intergenic | 35.0% |
| !! | AAGCCATTCATCTAGAGTTT+TGG | + | chr4_3:66307507-66307526 | None:intergenic | 35.0% |
| TCGTTTCTCAACAAGTCATT+GGG | - | chr4_3:66307558-66307577 | Msa0656950:CDS | 35.0% | |
| ! | AAGCCTGTAACCAATTTGTT+AGG | - | chr4_3:66308290-66308309 | Msa0656950:intron | 35.0% |
| TGACCTAACAAATTGGTTAC+AGG | + | chr4_3:66308296-66308315 | None:intergenic | 35.0% | |
| GTTAGCATGACCTAACAAAT+TGG | + | chr4_3:66308303-66308322 | None:intergenic | 35.0% | |
| !!! | CACAATGTTTTTTTGGTCAC+AGG | + | chr4_3:66308426-66308445 | None:intergenic | 35.0% |
| ACTGTCACATAAAGATTGAG+AGG | - | chr4_3:66308478-66308497 | Msa0656950:intron | 35.0% | |
| ! | TAAAGATTGAGAGGTGTAGT+TGG | - | chr4_3:66308487-66308506 | Msa0656950:intron | 35.0% |
| TAGACTCTGTAATTTGAGTG+GGG | + | chr4_3:66308883-66308902 | None:intergenic | 35.0% | |
| TACACTCTTATTAACCGAAG+GGG | + | chr4_3:66308999-66309018 | None:intergenic | 35.0% | |
| !! | AAAATAATTGGGTTGACGGT+CGG | + | chr4_3:66309133-66309152 | None:intergenic | 35.0% |
| !! | TGGGAAAATAATTGGGTTGA+CGG | + | chr4_3:66309137-66309156 | None:intergenic | 35.0% |
| CCATAAAAAGCGAAATGGAT+TGG | + | chr4_3:66309157-66309176 | None:intergenic | 35.0% | |
| !!! | CCAATCCATTTCGCTTTTTA+TGG | - | chr4_3:66309154-66309173 | Msa0656950:intron | 35.0% |
| AAAAGTAGCAGTGAGTAGTT+AGG | + | chr4_3:66309871-66309890 | None:intergenic | 35.0% | |
| ! | TGACTTCTGTATGATTTGGA+AGG | + | chr4_3:66309921-66309940 | None:intergenic | 35.0% |
| GAAGTCATGTACAGTGTTTA+TGG | - | chr4_3:66309934-66309953 | Msa0656950:intron | 35.0% | |
| ! | AACTCCTAACTTTAAGGAGA+GGG | + | chr4_3:66310018-66310037 | None:intergenic | 35.0% |
| ! | AAACTCCTAACTTTAAGGAG+AGG | + | chr4_3:66310019-66310038 | None:intergenic | 35.0% |
| GAGTAGTAAAGTAGAGAACA+TGG | + | chr4_3:66310046-66310065 | None:intergenic | 35.0% | |
| ! | GGAGTATTATTTAGAGTAGG+AGG | + | chr4_3:66310069-66310088 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr4_3:66310225-66310244 | Msa0656950:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr4_3:66310229-66310248 | Msa0656950:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr4_3:66310328-66310347 | Msa0656950:intron | 35.0% |
| ! | GTCGTTTAAGGTTTATACAC+GGG | - | chr4_3:66310359-66310378 | Msa0656950:intron | 35.0% |
| AGGTTTATACACGGGTATTA+AGG | - | chr4_3:66310367-66310386 | Msa0656950:intron | 35.0% | |
| AGTTAGTGGAGTAGTTAAGT+TGG | - | chr4_3:66310458-66310477 | Msa0656950:intron | 35.0% | |
| AGACAATTATTATGAGACGG+AGG | - | chr4_3:66310585-66310604 | Msa0656950:intron | 35.0% | |
| GACAATTATTATGAGACGGA+GGG | - | chr4_3:66310586-66310605 | Msa0656950:intron | 35.0% | |
| GATTTACTTAACTAGTGCTC+CGG | - | chr4_3:66310765-66310784 | Msa0656950:intron | 35.0% | |
| ATTTACTTAACTAGTGCTCC+GGG | - | chr4_3:66310766-66310785 | Msa0656950:intron | 35.0% | |
| AACAAAGTTTGGACATGAGA+TGG | + | chr4_3:66311570-66311589 | None:intergenic | 35.0% | |
| ATTGAAGAAAATACGTGGTG+TGG | - | chr4_3:66312356-66312375 | Msa0656950:intron | 35.0% | |
| !! | CTTATCTCTAGTCTTGTGAA+AGG | + | chr4_3:66312391-66312410 | None:intergenic | 35.0% |
| ACGTAGTACTCTATAACTGA+AGG | + | chr4_3:66312554-66312573 | None:intergenic | 35.0% | |
| CAGGTAACTCAATTTAAGTG+TGG | - | chr4_3:66312791-66312810 | Msa0656950:intron | 35.0% | |
| GTAACTCAATTTAAGTGTGG+TGG | - | chr4_3:66312794-66312813 | Msa0656950:intron | 35.0% | |
| ! | TGAAATCTGAAGCTGAATGT+GGG | + | chr4_3:66312859-66312878 | None:intergenic | 35.0% |
| ! | ATGAAATCTGAAGCTGAATG+TGG | + | chr4_3:66312860-66312879 | None:intergenic | 35.0% |
| !! | AAAATTAAGGGGTGTTGAGA+CGG | + | chr4_3:66312945-66312964 | None:intergenic | 35.0% |
| ! | CCTTTTCGGATCCAAAATTA+AGG | + | chr4_3:66312958-66312977 | None:intergenic | 35.0% |
| ! | CCTTAATTTTGGATCCGAAA+AGG | - | chr4_3:66312955-66312974 | Msa0656950:intron | 35.0% |
| !! | AAATGTAGCTGGTTCCTTTT+CGG | + | chr4_3:66312972-66312991 | None:intergenic | 35.0% |
| AGGAACCAGCTACATTTAAA+CGG | - | chr4_3:66312975-66312994 | Msa0656950:intron | 35.0% | |
| !!! | CCATTTTTTTGTTGTTGGCT+GGG | + | chr4_3:66313027-66313046 | None:intergenic | 35.0% |
| !!! | TCCATTTTTTTGTTGTTGGC+TGG | + | chr4_3:66313028-66313047 | None:intergenic | 35.0% |
| GTTCTTGCAAGTTGTTCATT+AGG | + | chr4_3:66313078-66313097 | None:intergenic | 35.0% | |
| GCACATAAAGTTTCAAATGG+AGG | + | chr4_3:66313130-66313149 | None:intergenic | 35.0% | |
| TGTTTACTACACACTTCAAG+GGG | - | chr4_3:66313495-66313514 | Msa0656950:CDS | 35.0% | |
| CCATCAATATCATTCACCTT+AGG | + | chr4_3:66313550-66313569 | None:intergenic | 35.0% | |
| CCTAAGGTGAATGATATTGA+TGG | - | chr4_3:66313547-66313566 | Msa0656950:CDS | 35.0% | |
| AAATCCGAGCTTAATGTGTA+TGG | - | chr4_3:66313616-66313635 | Msa0656950:CDS | 35.0% | |
| GATACCATACACATTAAGCT+CGG | + | chr4_3:66313623-66313642 | None:intergenic | 35.0% | |
| TGTGTATGGTATCATGTTTG+AGG | - | chr4_3:66313630-66313649 | Msa0656950:CDS | 35.0% | |
| GTGTATGGTATCATGTTTGA+GGG | - | chr4_3:66313631-66313650 | Msa0656950:CDS | 35.0% | |
| ! | TAAATTTGGGGCCTCATTAA+CGG | - | chr4_3:66313756-66313775 | Msa0656950:CDS | 35.0% |
| CCATAAACAAACCGTTAATG+AGG | + | chr4_3:66313770-66313789 | None:intergenic | 35.0% | |
| ! | CCTCATTAACGGTTTGTTTA+TGG | - | chr4_3:66313767-66313786 | Msa0656950:exon | 35.0% |
| ! | TTAACGGTTTGTTTATGGCA+TGG | - | chr4_3:66313772-66313791 | Msa0656950:exon | 35.0% |
| AGCTCTCTTTCTCTTCTTGT+GGG | + | chr4_3:66307193-66307212 | None:intergenic | 40.0% | |
| AAGCTCTCTTTCTCTTCTTG+TGG | + | chr4_3:66307194-66307213 | None:intergenic | 40.0% | |
| GGTTTACTTCTTTGACTCTG+AGG | - | chr4_3:66307325-66307344 | Msa0656950:CDS | 40.0% | |
| ! | CTTAATTGTTAGGCCTTGTG+CGG | + | chr4_3:66307351-66307370 | None:intergenic | 40.0% |
| CAATCATTGCACTTGACGAA+GGG | + | chr4_3:66307455-66307474 | None:intergenic | 40.0% | |
| ACAATCATTGCACTTGACGA+AGG | + | chr4_3:66307456-66307475 | None:intergenic | 40.0% | |
| TTCGTCAAGTGCAATGATTG+TGG | - | chr4_3:66307455-66307474 | Msa0656950:CDS | 40.0% | |
| GCACCAAAACTCTAGATGAA+TGG | - | chr4_3:66307501-66307520 | Msa0656950:CDS | 40.0% | |
| !! | AGATGAATGGCTTGCTATGA+TGG | - | chr4_3:66307514-66307533 | Msa0656950:CDS | 40.0% |
| !! | AATGGCTTGCTATGATGGAT+TGG | - | chr4_3:66307519-66307538 | Msa0656950:CDS | 40.0% |
| TTGAGAAACGAGCAACTTGT+AGG | + | chr4_3:66307549-66307568 | None:intergenic | 40.0% | |
| CTCGTTTCTCAACAAGTCAT+TGG | - | chr4_3:66307557-66307576 | Msa0656950:CDS | 40.0% | |
| ! | TTCTCCTTCCATTTTGTTGC+AGG | - | chr4_3:66307595-66307614 | Msa0656950:CDS | 40.0% |
| AGAACCTGCAACAAAATGGA+AGG | + | chr4_3:66307602-66307621 | None:intergenic | 40.0% | |
| TAATATCACTCCCTAAGGCA+AGG | + | chr4_3:66307812-66307831 | None:intergenic | 40.0% | |
| AACCTAAAGCCTGTAATGCA+AGG | - | chr4_3:66308448-66308467 | Msa0656950:intron | 40.0% | |
| TTCCTTGCATTACAGGCTTT+AGG | + | chr4_3:66308453-66308472 | None:intergenic | 40.0% | |
| AAGCCTGTAATGCAAGGAAT+TGG | - | chr4_3:66308454-66308473 | Msa0656950:intron | 40.0% | |
| ACACTCTTATTAACCGAAGG+GGG | + | chr4_3:66308998-66309017 | None:intergenic | 40.0% | |
| !!! | TCCTTTTTTTTTGTGGTGGC+CGG | - | chr4_3:66309617-66309636 | Msa0656950:intron | 40.0% |
| AGTACCCTCTCCTTAAAGTT+AGG | - | chr4_3:66310011-66310030 | Msa0656950:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+TGG | + | chr4_3:66310332-66310351 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr4_3:66310228-66310247 | Msa0656950:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+TGG | - | chr4_3:66310332-66310351 | Msa0656950:intron | 40.0% |
| !! | TAAGAGTGTCTTTAGGGCAT+TGG | - | chr4_3:66310634-66310653 | Msa0656950:intron | 40.0% |
| TTTACTTAACTAGTGCTCCG+GGG | - | chr4_3:66310767-66310786 | Msa0656950:intron | 40.0% | |
| GATCTTAAACCCCTCCATTA+AGG | - | chr4_3:66311163-66311182 | Msa0656950:intron | 40.0% | |
| AAATGTGGGACTGACCTTAA+TGG | + | chr4_3:66311180-66311199 | None:intergenic | 40.0% | |
| TTAGATGGCTAACAAGTTGC+TGG | - | chr4_3:66311954-66311973 | Msa0656950:intron | 40.0% | |
| !! | AACTGAAAAGTGTCAGGTGT+TGG | + | chr4_3:66312071-66312090 | None:intergenic | 40.0% |
| TCACAAGACTAGAGATAAGC+TGG | - | chr4_3:66312392-66312411 | Msa0656950:intron | 40.0% | |
| ! | AAGCAACATGGACTTTGGAA+TGG | + | chr4_3:66312420-66312439 | None:intergenic | 40.0% |
| ATCACAAGCAACATGGACTT+TGG | + | chr4_3:66312425-66312444 | None:intergenic | 40.0% | |
| ! | TTGATGGATCACAAGCAACA+TGG | + | chr4_3:66312432-66312451 | None:intergenic | 40.0% |
| GGGCAACACAAATTGTTAAG+AGG | - | chr4_3:66312506-66312525 | Msa0656950:intron | 40.0% | |
| !!! | TCATAAGTCGTTGGTTTTGC+AGG | - | chr4_3:66312772-66312791 | Msa0656950:intron | 40.0% |
| ! | TAAGTGTGGTGGGATTTCAT+TGG | - | chr4_3:66312805-66312824 | Msa0656950:intron | 40.0% |
| ! | AAGTGTGGTGGGATTTCATT+GGG | - | chr4_3:66312806-66312825 | Msa0656950:intron | 40.0% |
| ! | GAATGTTGAAGGGCAGTTTT+AGG | + | chr4_3:66312916-66312935 | None:intergenic | 40.0% |
| ACGGATCTTGGAATGTTGAA+GGG | + | chr4_3:66312926-66312945 | None:intergenic | 40.0% | |
| ! | GTCTCAACACCCCTTAATTT+TGG | - | chr4_3:66312944-66312963 | Msa0656950:intron | 40.0% |
| GGAACCAGCTACATTTAAAC+GGG | - | chr4_3:66312976-66312995 | Msa0656950:intron | 40.0% | |
| TCAACCCGTTTAAATGTAGC+TGG | + | chr4_3:66312983-66313002 | None:intergenic | 40.0% | |
| !! | TACATTTAAACGGGTTGACC+CGG | - | chr4_3:66312985-66313004 | Msa0656950:intron | 40.0% |
| CCCAGCCAACAACAAAAAAA+TGG | - | chr4_3:66313024-66313043 | Msa0656950:intron | 40.0% | |
| TCATTAGGGAGCTAGTTATG+TGG | + | chr4_3:66313063-66313082 | None:intergenic | 40.0% | |
| ATATCATTGCCCCTACCATT+GGG | + | chr4_3:66313226-66313245 | None:intergenic | 40.0% | |
| TATATCATTGCCCCTACCAT+TGG | + | chr4_3:66313227-66313246 | None:intergenic | 40.0% | |
| TGGTAGGGGCAATGATATAA+TGG | - | chr4_3:66313228-66313247 | Msa0656950:intron | 40.0% | |
| GGTAGGGGCAATGATATAAT+GGG | - | chr4_3:66313229-66313248 | Msa0656950:intron | 40.0% | |
| CCTCAACCTTGCATATCAAT+TGG | + | chr4_3:66313261-66313280 | None:intergenic | 40.0% | |
| CCAATTGATATGCAAGGTTG+AGG | - | chr4_3:66313258-66313277 | Msa0656950:intron | 40.0% | |
| !!! | AATTTTGGCTAGCATGCTTG+TGG | - | chr4_3:66313318-66313337 | Msa0656950:intron | 40.0% |
| !!! | TGTTGTTTTGGTGCTTCCTA+AGG | - | chr4_3:66313531-66313550 | Msa0656950:CDS | 40.0% |
| ! | TTTTCACAATCCGAACGGCT+TGG | - | chr4_3:66307271-66307290 | Msa0656950:three_prime_UTR | 45.0% |
| GATAGTGAAGTTTCATGGCC+AGG | + | chr4_3:66307298-66307317 | None:intergenic | 45.0% | |
| TTGTGGAGCAAGAACCATTG+AGG | - | chr4_3:66307472-66307491 | Msa0656950:CDS | 45.0% | |
| ! | TTTGGTGCAATTGGCCTCAA+TGG | + | chr4_3:66307489-66307508 | None:intergenic | 45.0% |
| GAAACGAGCAACTTGTAGGA+AGG | + | chr4_3:66307545-66307564 | None:intergenic | 45.0% | |
| TTTCGTACTCTCCTTGCCTT+AGG | - | chr4_3:66307798-66307817 | Msa0656950:CDS | 45.0% | |
| TTCGTACTCTCCTTGCCTTA+GGG | - | chr4_3:66307799-66307818 | Msa0656950:CDS | 45.0% | |
| GTGCCAATTCCTTGCATTAC+AGG | + | chr4_3:66308460-66308479 | None:intergenic | 45.0% | |
| AATTGAGAGAACACCCCCTT+CGG | - | chr4_3:66308982-66309001 | Msa0656950:intron | 45.0% | |
| TCCGGCCACCACAAAAAAAA+AGG | + | chr4_3:66309621-66309640 | None:intergenic | 45.0% | |
| AAGATCCGGAGTTCGAATTC+CGG | + | chr4_3:66309639-66309658 | None:intergenic | 45.0% | |
| CGACTCTAACACAATTTCGC+CGG | - | chr4_3:66309791-66309810 | Msa0656950:intron | 45.0% | |
| ACGGATGGAGTAGTCGTTTA+AGG | - | chr4_3:66310347-66310366 | Msa0656950:intron | 45.0% | |
| TTACTTAACTAGTGCTCCGG+GGG | - | chr4_3:66310768-66310787 | Msa0656950:intron | 45.0% | |
| GGTCAGTCCCACATTTATCA+AGG | - | chr4_3:66311184-66311203 | Msa0656950:intron | 45.0% | |
| GGACAGACCAGCAACAAATT+GGG | + | chr4_3:66311549-66311568 | None:intergenic | 45.0% | |
| TGGACAGACCAGCAACAAAT+TGG | + | chr4_3:66311550-66311569 | None:intergenic | 45.0% | |
| ! | CTCAGTGGTGTCAATAGTGA+TGG | + | chr4_3:66311617-66311636 | None:intergenic | 45.0% |
| GATTTCATTGGGCCTTAGCT+GGG | - | chr4_3:66312817-66312836 | Msa0656950:intron | 45.0% | |
| GACGGATCTTGGAATGTTGA+AGG | + | chr4_3:66312927-66312946 | None:intergenic | 45.0% | |
| TAGGGAGCTAGTTATGTGGA+AGG | + | chr4_3:66313059-66313078 | None:intergenic | 45.0% | |
| TATCATTGCCCCTACCATTG+GGG | + | chr4_3:66313225-66313244 | None:intergenic | 45.0% | |
| TTGATATGCAAGGTTGAGGC+AGG | - | chr4_3:66313262-66313281 | Msa0656950:intron | 45.0% | |
| TTACTACACACTTCAAGGGG+TGG | - | chr4_3:66313498-66313517 | Msa0656950:CDS | 45.0% | |
| TACTACACACTTCAAGGGGT+GGG | - | chr4_3:66313499-66313518 | Msa0656950:CDS | 45.0% | |
| !!! | GGGAGATGAAGGTGTTGTTT+TGG | - | chr4_3:66313519-66313538 | Msa0656950:CDS | 45.0% |
| !!! | TGTTTTAAATAAAAATTTTA+AGG | - | chr4_3:66308071-66308090 | Msa0656950:CDS | 5.0% |
| ! | AGAGTATCTTCAGTTGGGCC+AGG | - | chr4_3:66307227-66307246 | Msa0656950:three_prime_UTR | 50.0% |
| GTGAAAAACATCCGACCCAG+TGG | + | chr4_3:66307258-66307277 | None:intergenic | 50.0% | |
| GTATTGCTAACCAATGCCCC+CGG | + | chr4_3:66310787-66310806 | None:intergenic | 50.0% | |
| TGGGACTGACCTTAATGGAG+GGG | + | chr4_3:66311175-66311194 | None:intergenic | 50.0% | |
| GTGGGACTGACCTTAATGGA+GGG | + | chr4_3:66311176-66311195 | None:intergenic | 50.0% | |
| TGTGGGACTGACCTTAATGG+AGG | + | chr4_3:66311177-66311196 | None:intergenic | 50.0% | |
| ! | TGTGCATGAGAGTATGTGCG+AGG | - | chr4_3:66312031-66312050 | Msa0656950:intron | 50.0% |
| GGATTTCATTGGGCCTTAGC+TGG | - | chr4_3:66312816-66312835 | Msa0656950:intron | 50.0% | |
| CTTAGCTGGGCCCATGTTAT+GGG | - | chr4_3:66312830-66312849 | Msa0656950:intron | 50.0% | |
| TTAGCTGGGCCCATGTTATG+GGG | - | chr4_3:66312831-66312850 | Msa0656950:intron | 50.0% | |
| ATGTGGGTCCCCCATAACAT+GGG | + | chr4_3:66312843-66312862 | None:intergenic | 50.0% | |
| AATGTGGGTCCCCCATAACA+TGG | + | chr4_3:66312844-66312863 | None:intergenic | 50.0% | |
| !! | TTTAAACGGGTTGACCCGGT+TGG | - | chr4_3:66312989-66313008 | Msa0656950:intron | 50.0% |
| !! | TTGACCCGGTTGGTGATCAT+TGG | - | chr4_3:66312999-66313018 | Msa0656950:intron | 50.0% |
| GGATCCAATGATCACCAACC+GGG | + | chr4_3:66313006-66313025 | None:intergenic | 50.0% | |
| GGGATCCAATGATCACCAAC+CGG | + | chr4_3:66313007-66313026 | None:intergenic | 50.0% | |
| ! | GGAGGGGTTTGTTCAACACT+TGG | + | chr4_3:66313112-66313131 | None:intergenic | 50.0% |
| TTCGGATCCTTCTCGAACTC+GGG | + | chr4_3:66313173-66313192 | None:intergenic | 50.0% | |
| GTTCGGATCCTTCTCGAACT+CGG | + | chr4_3:66313174-66313193 | None:intergenic | 50.0% | |
| AACTGTCACGGTTGTGGGTT+CGG | + | chr4_3:66313191-66313210 | None:intergenic | 50.0% | |
| CGACAAACTGTCACGGTTGT+GGG | + | chr4_3:66313196-66313215 | None:intergenic | 50.0% | |
| TCGACAAACTGTCACGGTTG+TGG | + | chr4_3:66313197-66313216 | None:intergenic | 50.0% | |
| GCTAGCATGCTTGTGGATCA+AGG | - | chr4_3:66313325-66313344 | Msa0656950:intron | 50.0% | |
| !! | TTTGACTCTGAGGCCGCACA+AGG | - | chr4_3:66307335-66307354 | Msa0656950:CDS | 55.0% |
| CAGATTCCGATCGCCGGAAT+CGG | + | chr4_3:66307427-66307446 | None:intergenic | 55.0% | |
| TTGACGGTCGGTCTCAACCA+AGG | + | chr4_3:66309121-66309140 | None:intergenic | 55.0% | |
| CCATAACATGGGCCCAGCTA+AGG | + | chr4_3:66312832-66312851 | None:intergenic | 55.0% | |
| CCTTAGCTGGGCCCATGTTA+TGG | - | chr4_3:66312829-66312848 | Msa0656950:intron | 55.0% | |
| TAGCTGGGCCCATGTTATGG+GGG | - | chr4_3:66312832-66312851 | Msa0656950:intron | 55.0% | |
| !! | AGGGGTGTTGAGACGGATCT+TGG | + | chr4_3:66312938-66312957 | None:intergenic | 55.0% |
| TGCATAGCCCGAGTTCGAGA+AGG | - | chr4_3:66313163-66313182 | Msa0656950:intron | 55.0% | |
| GTCGGGTCGACAAACTGTCA+CGG | + | chr4_3:66313203-66313222 | None:intergenic | 55.0% | |
| ATTGCCCCTACCATTGGGGT+CGG | + | chr4_3:66313221-66313240 | None:intergenic | 55.0% | |
| CTTCAAGGGGTGGGAGATGA+AGG | - | chr4_3:66313508-66313527 | Msa0656950:CDS | 55.0% | |
| TTGGGCCAGGTCATGCCACT+GGG | - | chr4_3:66307240-66307259 | Msa0656950:three_prime_UTR | 60.0% | |
| ! | CAATCCGAACGGCTTGGACC+TGG | - | chr4_3:66307277-66307296 | Msa0656950:exon | 60.0% |
| ATGGCCAGGTCCAAGCCGTT+CGG | + | chr4_3:66307284-66307303 | None:intergenic | 60.0% | |
| ! | TCATCCCTTGCGGCCGATTC+CGG | - | chr4_3:66307411-66307430 | Msa0656950:CDS | 60.0% |
| CGATTCCGGCGATCGGAATC+TGG | - | chr4_3:66307425-66307444 | Msa0656950:CDS | 60.0% | |
| GTCGACCAGATTCCGATCGC+CGG | + | chr4_3:66307433-66307452 | None:intergenic | 60.0% | |
| GGTGGCCGGAATTCGAACTC+CGG | - | chr4_3:66309631-66309650 | Msa0656950:intron | 60.0% | |
| ! | AACTAGTGCTCCGGGGGCAT+TGG | - | chr4_3:66310774-66310793 | Msa0656950:intron | 60.0% |
| GTTTGTCGACCCGACCCCAA+TGG | - | chr4_3:66313208-66313227 | Msa0656950:intron | 60.0% | |
| TCGACCCGACCCCAATGGTA+GGG | - | chr4_3:66313213-66313232 | Msa0656950:intron | 60.0% | |
| TTGCCCCTACCATTGGGGTC+GGG | + | chr4_3:66313220-66313239 | None:intergenic | 60.0% | |
| GTTGGGCCAGGTCATGCCAC+TGG | - | chr4_3:66307239-66307258 | Msa0656950:three_prime_UTR | 65.0% | |
| GCCAGGTCATGCCACTGGGT+CGG | - | chr4_3:66307244-66307263 | Msa0656950:three_prime_UTR | 65.0% | |
| TCCGACCCAGTGGCATGACC+TGG | + | chr4_3:66307248-66307267 | None:intergenic | 65.0% | |
| ATCGCCGGAATCGGCCGCAA+GGG | + | chr4_3:66307418-66307437 | None:intergenic | 65.0% | |
| ! | TTGCGGCCGATTCCGGCGAT+CGG | - | chr4_3:66307418-66307437 | Msa0656950:CDS | 65.0% |
| GTCGACCCGACCCCAATGGT+AGG | - | chr4_3:66313212-66313231 | Msa0656950:intron | 65.0% | |
| CGACCCGACCCCAATGGTAG+GGG | - | chr4_3:66313214-66313233 | Msa0656950:intron | 65.0% | |
| GATCGCCGGAATCGGCCGCA+AGG | + | chr4_3:66307419-66307438 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 66307120 | 66313838 | 66307120 | ID=Msa0656950;Name=Msa0656950 |
| chr4_3 | mRNA | 66307120 | 66313838 | 66307120 | ID=Msa0656950-mRNA-1;Parent=Msa0656950;Name=Msa0656950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=62|1|1|1|1|1|2|175|434 |
| chr4_3 | exon | 66307120 | 66308164 | 66307120 | ID=Msa0656950-mRNA-1:exon:19060;Parent=Msa0656950-mRNA-1 |
| chr4_3 | exon | 66313342 | 66313838 | 66313342 | ID=Msa0656950-mRNA-1:exon:19059;Parent=Msa0656950-mRNA-1 |
| chr4_3 | five_prime_UTR | 66313777 | 66313838 | 66313777 | ID=Msa0656950-mRNA-1:five_prime_utr;Parent=Msa0656950-mRNA-1 |
| chr4_3 | CDS | 66313342 | 66313776 | 66313342 | ID=Msa0656950-mRNA-1:cds;Parent=Msa0656950-mRNA-1 |
| chr4_3 | CDS | 66307295 | 66308164 | 66307295 | ID=Msa0656950-mRNA-1:cds;Parent=Msa0656950-mRNA-1 |
| chr4_3 | three_prime_UTR | 66307120 | 66307294 | 66307120 | ID=Msa0656950-mRNA-1:three_prime_utr;Parent=Msa0656950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
