AlfalfaGEDB | Msa1074810

M. sativa cultivar zhongmu-4 / Msa1074810

KEGG: K19036
GO: GO:0000049 GO:0000122 GO:0000166 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003008 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003690 GO:0003697 GO:0003700 GO:0003723 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0008026 GO:0008094 GO:0008134 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0021510 GO:0021515 GO:0021517 GO:0021522 GO:0021953 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0030424 GO:0030426 GO:0030427 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032574 GO:0032575 GO:0032991 GO:0033267 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0036477 GO:0042623 GO:0042995 GO:0043005 GO:0043021 GO:0043022 GO:0043025 GO:0043043 GO:0043139 GO:0043141 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043603 GO:0043604 GO:0043621 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0045892 GO:0045934 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050905 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051260 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097367 GO:0097458 GO:0120025 GO:0120038 GO:0140097 GO:0140098 GO:0140110 GO:0150034 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:1990904 GO:1990955 GO:2000112 GO:2000113 GO:2001141
PFAM: PF13086.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1074810	sp\|Q60560\|SMBP2_MESAU	47.597	645	316	10	12	642	5	641	0.0	551

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1074810	G7KTL0	99.535	645	3	0	1	645	1	645	0.0	1313

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa1074810	0.825836	3.772132e-54	-8.615850e-47
Msa0007480	Msa1074810	0.825055	5.774044e-54	-8.615850e-47
Msa0016670	Msa1074810	0.809413	1.915834e-50	-8.615850e-47
Msa0017510	Msa1074810	0.815668	8.215656e-52	-8.615850e-47
Msa0026130	Msa1074810	0.808545	2.938541e-50	-8.615850e-47
Msa0027230	Msa1074810	0.842429	2.600794e-58	-8.615850e-47
Msa0040240	Msa1074810	0.800525	1.383710e-48	-8.615850e-47
Msa0043670	Msa1074810	-0.802948	4.403045e-49	-8.615850e-47
Msa0047070	Msa1074810	0.815441	9.229208e-52	-8.615850e-47
Msa0075220	Msa1074810	0.848267	6.835321e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1074810	MtrunA17_Chr7g0257921	99.535	645	3	0	1	645	1	645	0.0	1313
Msa1074810	MtrunA17_Chr1g0165651	34.402	686	373	17	13	634	256	928	1.44e-107	347
Msa1074810	MtrunA17_Chr5g0400101	32.735	446	274	11	195	633	477	903	3.64e-61	221
Msa1074810	MtrunA17_Chr5g0394941	27.855	578	336	20	91	640	296	820	1.22e-43	168
Msa1074810	MtrunA17_Chr2g0304151	27.682	578	337	20	91	640	296	820	3.56e-43	167
Msa1074810	MtrunA17_Chr7g0228141	28.947	532	295	14	107	611	277	752	1.14e-42	164
Msa1074810	MtrunA17_Chr2g0334291	29.691	485	227	17	240	620	1579	2053	1.42e-38	153
Msa1074810	MtrunA17_Chr8g0343741	37.857	280	151	11	351	617	975	1244	1.87e-34	140
Msa1074810	MtrunA17_Chr5g0433321	34.521	365	201	14	300	641	507	856	9.34e-34	138
Msa1074810	MtrunA17_Chr3g0109541	34.062	320	157	12	352	641	585	880	4.84e-33	135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1074810	AT2G03270.1	82.520	635	110	1	11	644	5	639	0.0	1080
Msa1074810	AT5G35970.1	34.532	695	394	13	1	639	252	941	3.09e-109	352
Msa1074810	AT5G47010.1	32.960	446	273	11	195	633	489	915	2.74e-62	225
Msa1074810	AT1G08840.1	30.818	477	265	10	168	633	861	1283	1.04e-48	184
Msa1074810	AT1G08840.3	30.818	477	265	10	168	633	896	1318	1.25e-48	184
Msa1074810	AT1G08840.4	30.818	477	265	10	168	633	893	1315	1.32e-48	184
Msa1074810	AT1G08840.2	30.818	477	265	10	168	633	880	1302	1.45e-48	184
Msa1074810	AT4G15570.2	33.103	435	210	16	229	632	276	660	3.52e-42	163
Msa1074810	AT4G15570.4	33.103	435	210	16	229	632	276	660	3.52e-42	163
Msa1074810	AT4G15570.3	33.103	435	210	16	229	632	365	749	8.82e-42	162

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Find 143 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCCAAAGGTTGTTA+AGG	0.396559	7_2:+72797490	Msa1074810:three_prime_UTR
AAACAAGGAGAACTCACTGA+AGG	0.636587	7_2:+72797088	Msa1074810:CDS
AAACTCAATAAGGCTGATTT+AGG	0.180161	7_2:+72791917	Msa1074810:CDS
AAAGCGATTGGTGCAAAGTG+GGG	0.741815	7_2:+72796884	Msa1074810:CDS
AACCCTTCTTCTCATAGACA+CGG	0.649534	7_2:+72796477	Msa1074810:CDS
AAGCACTTGAGGTTGCATGC+TGG	0.573130	7_2:+72795545	Msa1074810:CDS
AATATTAACTACTCTGATTG+GGG	0.572937	7_2:+72795462	Msa1074810:CDS
AATCCTCAATTTGAAGTGTG+TGG	0.602752	7_2:+72791101	Msa1074810:CDS
ACAATCGACAAATTGATCAA+TGG	0.537895	7_2:-72797525	None:intergenic
ACAGCAACCTTAACAACCTT+TGG	0.342411	7_2:-72797497	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAGAAAAGATGATGAATCA+TGG	+	chr7_2:72790959-72790978	Msa1074810:intron	30.0%
CAGAAACAAGAAAGAAGAAT+AGG	-	chr7_2:72791149-72791168	None:intergenic	30.0%
ATTTATTTGAGCTTAGCTAC+TGG	+	chr7_2:72791359-72791378	Msa1074810:intron	30.0%
TTATTTGCAGCTTATAACAC+TGG	-	chr7_2:72791556-72791575	None:intergenic	30.0%
ATCAATACCGTATTACTTTC+AGG	+	chr7_2:72791840-72791859	Msa1074810:intron	30.0%
AGGTGTAGTTTACAGATTAA+AGG	+	chr7_2:72791958-72791977	Msa1074810:CDS	30.0%
CTAATAAGAACTTACTGTGA+AGG	+	chr7_2:72792330-72792349	Msa1074810:intron	30.0%
GCATTAATACAGTTGAGTAA+AGG	+	chr7_2:72792526-72792545	Msa1074810:CDS	30.0%
TAAAAATCTTGATCACTCTC+AGG	+	chr7_2:72792645-72792664	Msa1074810:CDS	30.0%
ATTATAATTAAGGCCTCAAC+TGG	+	chr7_2:72792786-72792805	Msa1074810:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	72790599	72797716	72790599	ID=Msa1074810;Name=Msa1074810
chr7_2	mRNA	72790599	72797716	72790599	ID=Msa1074810-mRNA-1;Parent=Msa1074810;Name=Msa1074810-mRNA-1;_AED=0.10;_eAED=0.10;_QI=82\|1\|1\|1\|1\|1\|15\|229\|645
chr7_2	exon	72790599	72790764	72790599	ID=Msa1074810-mRNA-1:exon:16807;Parent=Msa1074810-mRNA-1
chr7_2	exon	72791027	72791131	72791027	ID=Msa1074810-mRNA-1:exon:16808;Parent=Msa1074810-mRNA-1
chr7_2	exon	72791695	72791763	72791695	ID=Msa1074810-mRNA-1:exon:16809;Parent=Msa1074810-mRNA-1
chr7_2	exon	72791890	72791979	72791890	ID=Msa1074810-mRNA-1:exon:16810;Parent=Msa1074810-mRNA-1
chr7_2	exon	72792093	72792176	72792093	ID=Msa1074810-mRNA-1:exon:16811;Parent=Msa1074810-mRNA-1
chr7_2	exon	72792502	72792666	72792502	ID=Msa1074810-mRNA-1:exon:16812;Parent=Msa1074810-mRNA-1
chr7_2	exon	72793621	72793808	72793621	ID=Msa1074810-mRNA-1:exon:16813;Parent=Msa1074810-mRNA-1
chr7_2	exon	72794902	72794974	72794902	ID=Msa1074810-mRNA-1:exon:16814;Parent=Msa1074810-mRNA-1
chr7_2	exon	72795054	72795107	72795054	ID=Msa1074810-mRNA-1:exon:16815;Parent=Msa1074810-mRNA-1
chr7_2	exon	72795325	72795582	72795325	ID=Msa1074810-mRNA-1:exon:16816;Parent=Msa1074810-mRNA-1
chr7_2	exon	72796014	72796220	72796014	ID=Msa1074810-mRNA-1:exon:16817;Parent=Msa1074810-mRNA-1
chr7_2	exon	72796400	72796503	72796400	ID=Msa1074810-mRNA-1:exon:16818;Parent=Msa1074810-mRNA-1
chr7_2	exon	72796806	72796950	72796806	ID=Msa1074810-mRNA-1:exon:16819;Parent=Msa1074810-mRNA-1
chr7_2	exon	72797065	72797199	72797065	ID=Msa1074810-mRNA-1:exon:16820;Parent=Msa1074810-mRNA-1
chr7_2	exon	72797311	72797716	72797311	ID=Msa1074810-mRNA-1:exon:16821;Parent=Msa1074810-mRNA-1
chr7_2	five_prime_UTR	72790599	72790680	72790599	ID=Msa1074810-mRNA-1:five_prime_utr;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72790681	72790764	72790681	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72791027	72791131	72791027	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72791695	72791763	72791695	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72791890	72791979	72791890	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72792093	72792176	72792093	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72792502	72792666	72792502	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72793621	72793808	72793621	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72794902	72794974	72794902	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72795054	72795107	72795054	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72795325	72795582	72795325	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72796014	72796220	72796014	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72796400	72796503	72796400	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72796806	72796950	72796806	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72797065	72797199	72797065	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	CDS	72797311	72797487	72797311	ID=Msa1074810-mRNA-1:cds;Parent=Msa1074810-mRNA-1
chr7_2	three_prime_UTR	72797488	72797716	72797488	ID=Msa1074810-mRNA-1:three_prime_utr;Parent=Msa1074810-mRNA-1

Gene Sequence

>Msa1074810

ATGGAGAGTAAAAAGAAAGCATCATCACCTCTCTCTTTGGACCAATTCATCTCTATTACAACCCCTCTTCTCGACTTGGAAAAGGATGCTGAGATATCGAGCTCAATTGCCACTGGCGCGTCGAGGAATTTGGATACTGCTCAAAAGAGAGGATCAACAATCCTCAATTTGAAGTGTGTGGATGTTCAGACAGGGCTTATGGGAAAGTCTCTGATCGAGTTACAATCCACAAAAGCAGATGTGCTTCCTGCTCACAAGTTTGGCACTCATGATGTTGTTGTTTTAAAACTCAATAAGGCTGATTTAGGTTCTCCTGCTCTTGGGCAAGGTGTAGTTTACAGATTAAAGGACTCGTCAATTACTGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCACAGGATGAAAGATGCATTAATACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCTTCTGATCTAATTCCTGTCTTGTTTGGGGAGAGGCAACCAACAGTGTCCAAGAAGGATGTAGCTTTCACTTCCATTAATAAAAATCTTGATCACTCTCAGAAAGATGCAATTTCCAAAGCCCTATCGTCGAAGAATGTTTTCTTGCTACATGGACCTCCTGGAACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTTGACAACATCGTTGAGCGGCTAGTTCCACACAGAGTTAAGCTGGTGAGGATTGGTCATCCTGCACGTTTATTGCCTCAAGTGGTGGACAGTGCACTGGATGCCCAGGTACTTCGAGGAGATAATAGTGGTCTCGCAAATGACATTCGGAAAGAAATGAAGGTATTGAATGGAAAGCTGCTAAAAACCAAAGAAAAAAATACAAGGAGGGAGATACAGAAGGAACTTAGGACTCTATCCAGAGAAGAGCGGAAAAGGCAGCAGCTTGCTGTTACAGACGTGATTAAAACTTCAGATGTAATATTAACTACTCTGATTGGGGCTTCCTCTAAGAAACTTGGCAATACTTCATTTGATTTAGTGATTATTGACGAAGCTGCTCAAGCACTTGAGGTTGCATGCTGGATACCTCTGCTGAAGGGTACAAGATGTATACTTGCAGGAGACCATCTTCAACTTCCTCCAACGATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACCCTCTTTGAAAGACTTGCAGAACTGTATGGAGATGAAGTCACATCTATGCTTACTGTCCAGTACCGTATGCATCAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGGTCAAGGCTCATGCATGTGTTGCTGCACATATGCTATATGATCTTGAGGGCGTGAAGAAGACATCTTCAACTGAACCAACCCTTCTTCTCATAGACACGGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACCCTTAATGAAGGTGAATCTGAAGTTGCTATGGCTCATGCAAAGCGATTGGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTACTGAAGATGTTAAAAAACAAGGAGAACTCACTGAAGGATATTGAAATCTCAACAGTTGATGGTTTCCAGGGAAGAGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAGGAGGTGGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCCGTGACACGTGCAAGAAGACAATGCTGTATTGTCTGTGACACTGAGACAGTCAGTAGTGATGGATTTCTAAAGCGGTTGATTGAATATTTTGAAGAGCATGGCGAATATCAGAGTGCATCCGAGTACCAGAATGAATAG

Protein sequence

>Msa1074810

MESKKKASSPLSLDQFISITTPLLDLEKDAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIELQSTKADVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYHRMKDALIQLSKGVHKGPASDLIPVLFGERQPTVSKKDVAFTSINKNLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRIGHPARLLPQVVDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVTDVIKTSDVILTTLIGASSKKLGNTSFDLVIIDEAAQALEVACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVAAHMLYDLEGVKKTSSTEPTLLLIDTAGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDTETVSSDGFLKRLIEYFEEHGEYQSASEYQNE*