Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110360 | XP_024632154.1 | 77.740 | 292 | 10 | 2 | 53 | 289 | 1 | 292 | 5.67e-141 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110360 | sp|Q6NM73|PDLP2_ARATH | 49.669 | 302 | 78 | 7 | 61 | 289 | 7 | 307 | 1.11e-76 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110360 | A0A396JQZ9 | 77.740 | 292 | 10 | 2 | 53 | 289 | 1 | 292 | 2.71e-141 | 409 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa0110360 | 0.878563 | 2.538234e-69 | -8.615850e-47 |
| Msa0044020 | Msa0110360 | 0.803049 | 4.195657e-49 | -8.615850e-47 |
| Msa0073670 | Msa0110360 | 0.809059 | 2.281529e-50 | -8.615850e-47 |
| Msa0074320 | Msa0110360 | 0.818376 | 2.024610e-52 | -8.615850e-47 |
| Msa0077200 | Msa0110360 | 0.807781 | 4.274580e-50 | -8.615850e-47 |
| Msa0103000 | Msa0110360 | 0.805983 | 1.025756e-49 | -8.615850e-47 |
| Msa0110360 | Msa0110970 | 0.843443 | 1.396988e-58 | -8.615850e-47 |
| Msa0110360 | Msa0115160 | 0.816335 | 5.830166e-52 | -8.615850e-47 |
| Msa0110360 | Msa0118570 | 0.808452 | 3.075533e-50 | -8.615850e-47 |
| Msa0110360 | Msa0124340 | 0.819726 | 9.985030e-53 | -8.615850e-47 |
| Msa0110360 | Msa0124990 | 0.811445 | 6.977569e-51 | -8.615850e-47 |
| Msa0110360 | Msa0134180 | 0.820185 | 7.838827e-53 | -8.615850e-47 |
| Msa0110360 | Msa0186890 | 0.805987 | 1.023506e-49 | -8.615850e-47 |
| Msa0110360 | Msa0187690 | 0.813565 | 2.400653e-51 | -8.615850e-47 |
| Msa0110360 | Msa0222920 | 0.803406 | 3.540108e-49 | -8.615850e-47 |
| Msa0110360 | Msa0241800 | 0.812073 | 5.092410e-51 | -8.615850e-47 |
| Msa0110360 | Msa0264870 | 0.809634 | 1.716970e-50 | -8.615850e-47 |
| Msa0110360 | Msa0292400 | 0.835696 | 1.443929e-56 | -8.615850e-47 |
| Msa0110360 | Msa0302380 | 0.804886 | 1.742101e-49 | -8.615850e-47 |
| Msa0110360 | Msa0410500 | 0.803258 | 3.798668e-49 | -8.615850e-47 |
| Msa0110360 | Msa0422850 | 0.806620 | 7.530544e-50 | -8.615850e-47 |
| Msa0110360 | Msa0422930 | 0.800170 | 1.633983e-48 | -8.615850e-47 |
| Msa0110360 | Msa0434920 | 0.805615 | 1.225277e-49 | -8.615850e-47 |
| Msa0110360 | Msa0447370 | 0.806136 | 9.523958e-50 | -8.615850e-47 |
| Msa0110360 | Msa0485990 | 0.812278 | 4.595407e-51 | -8.615850e-47 |
| Msa0110360 | Msa0541860 | 0.802276 | 6.057482e-49 | -8.615850e-47 |
| Msa0110360 | Msa0555910 | 0.831526 | 1.587963e-55 | -8.615850e-47 |
| Msa0110360 | Msa0574890 | 0.810321 | 1.221953e-50 | -8.615850e-47 |
| Msa0110360 | Msa0586690 | 0.801151 | 1.030698e-48 | -8.615850e-47 |
| Msa0110360 | Msa0609450 | 0.841298 | 5.173891e-58 | -8.615850e-47 |
| Msa0110360 | Msa0618040 | 0.824929 | 6.185219e-54 | -8.615850e-47 |
| Msa0110360 | Msa0620990 | 0.810707 | 1.008310e-50 | -8.615850e-47 |
| Msa0110360 | Msa0650090 | 0.838946 | 2.125851e-57 | -8.615850e-47 |
| Msa0110360 | Msa0664610 | 0.810861 | 9.339879e-51 | -8.615850e-47 |
| Msa0110360 | Msa0677290 | 0.810679 | 1.022387e-50 | -8.615850e-47 |
| Msa0110360 | Msa0684500 | 0.811590 | 6.489331e-51 | -8.615850e-47 |
| Msa0110360 | Msa0692080 | 0.857796 | 1.278205e-62 | -8.615850e-47 |
| Msa0110360 | Msa0701280 | 0.808581 | 2.886899e-50 | -8.615850e-47 |
| Msa0110360 | Msa0702340 | 0.803992 | 2.675141e-49 | -8.615850e-47 |
| Msa0110360 | Msa0702660 | 0.803684 | 3.100127e-49 | -8.615850e-47 |
| Msa0110360 | Msa0703230 | 0.809004 | 2.344504e-50 | -8.615850e-47 |
| Msa0110360 | Msa0738040 | 0.817185 | 3.760463e-52 | -8.615850e-47 |
| Msa0110360 | Msa0754520 | 0.805870 | 1.083546e-49 | -8.615850e-47 |
| Msa0110360 | Msa0760380 | 0.801275 | 9.721702e-49 | -8.615850e-47 |
| Msa0110360 | Msa0825020 | 0.807762 | 4.314407e-50 | -8.615850e-47 |
| Msa0110360 | Msa0833220 | 0.805534 | 1.274710e-49 | -8.615850e-47 |
| Msa0110360 | Msa0930780 | 0.835807 | 1.353567e-56 | -8.615850e-47 |
| Msa0110360 | Msa1012700 | 0.827714 | 1.343380e-54 | -8.615850e-47 |
| Msa0110360 | Msa1012810 | 0.824320 | 8.605639e-54 | -8.615850e-47 |
| Msa0110360 | Msa1054240 | 0.827636 | 1.402440e-54 | -8.615850e-47 |
| Msa0110360 | Msa1066490 | 0.803770 | 2.974409e-49 | -8.615850e-47 |
| Msa0110360 | Msa1082700 | 0.805593 | 1.238816e-49 | -8.615850e-47 |
| Msa0110360 | Msa1091520 | 0.800362 | 1.493636e-48 | -8.615850e-47 |
| Msa0110360 | Msa1094420 | 0.820409 | 6.963832e-53 | -8.615850e-47 |
| Msa0110360 | Msa1097640 | 0.806191 | 9.273046e-50 | -8.615850e-47 |
| Msa0110360 | Msa1126510 | 0.800995 | 1.109298e-48 | -8.615850e-47 |
| Msa0110360 | Msa1127890 | 0.801703 | 7.946888e-49 | -8.615850e-47 |
| Msa0110360 | Msa1127950 | 0.802281 | 6.042977e-49 | -8.615850e-47 |
| Msa0110360 | Msa1139810 | 0.813147 | 2.964931e-51 | -8.615850e-47 |
| Msa0110360 | Msa1200370 | 0.802983 | 4.330646e-49 | -8.615850e-47 |
| Msa0110360 | Msa1201650 | 0.804505 | 2.092069e-49 | -8.615850e-47 |
| Msa0110360 | Msa1213930 | 0.801931 | 7.132136e-49 | -8.615850e-47 |
| Msa0110360 | Msa1226620 | 0.816401 | 5.635782e-52 | -8.615850e-47 |
| Msa0110360 | Msa1232710 | 0.809825 | 1.562437e-50 | -8.615850e-47 |
| Msa0110360 | Msa1236100 | 0.800533 | 1.378539e-48 | -8.615850e-47 |
| Msa0110360 | Msa1252190 | 0.847412 | 1.175322e-59 | -8.615850e-47 |
| Msa0110360 | Msa1274060 | 0.802314 | 5.949537e-49 | -8.615850e-47 |
| Msa0110360 | Msa1274280 | 0.800684 | 1.283822e-48 | -8.615850e-47 |
| Msa0110360 | Msa1292830 | 0.841066 | 5.950752e-58 | -8.615850e-47 |
| Msa0110360 | Msa1313300 | 0.814476 | 1.510747e-51 | -8.615850e-47 |
| Msa0110360 | Msa1351760 | 0.802072 | 6.673454e-49 | -8.615850e-47 |
| Msa0110360 | Msa1358550 | 0.802276 | 6.056642e-49 | -8.615850e-47 |
| Msa0110360 | Msa1406040 | 0.805989 | 1.022693e-49 | -8.615850e-47 |
| Msa0110360 | Msa1438740 | 0.807853 | 4.125519e-50 | -8.615850e-47 |
| Msa0110360 | Msa1459380 | 0.801502 | 8.737725e-49 | -8.615850e-47 |
| Msa0110360 | Msa1466990 | 0.837656 | 4.569891e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110360 | MtrunA17_Chr1g0168311 | 77.740 | 292 | 10 | 2 | 53 | 289 | 1 | 292 | 5.22e-145 | 409 |
| Msa0110360 | MtrunA17_Chr1g0186151 | 54.804 | 281 | 56 | 6 | 76 | 287 | 20 | 298 | 5.55e-73 | 227 |
| Msa0110360 | MtrunA17_Chr7g0262011 | 35.354 | 297 | 127 | 7 | 47 | 287 | 68 | 355 | 6.64e-46 | 158 |
| Msa0110360 | MtrunA17_Chr1g0190321 | 26.545 | 275 | 136 | 8 | 78 | 289 | 24 | 295 | 2.32e-22 | 94.4 |
| Msa0110360 | MtrunA17_Chr8g0391511 | 28.947 | 266 | 127 | 7 | 80 | 286 | 25 | 287 | 1.15e-21 | 92.4 |
| Msa0110360 | MtrunA17_Chr3g0110311 | 28.571 | 287 | 134 | 9 | 49 | 282 | 2 | 270 | 5.19e-21 | 90.1 |
| Msa0110360 | MtrunA17_Chr5g0434531 | 27.757 | 263 | 130 | 7 | 80 | 287 | 20 | 277 | 5.30e-21 | 90.1 |
| Msa0110360 | MtrunA17_Chr7g0230381 | 25.095 | 263 | 125 | 6 | 62 | 264 | 17 | 267 | 3.41e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110360 | AT1G04520.1 | 49.669 | 302 | 78 | 7 | 61 | 289 | 7 | 307 | 1.13e-77 | 238 |
| Msa0110360 | AT2G33330.1 | 47.195 | 303 | 90 | 7 | 55 | 289 | 4 | 304 | 1.86e-74 | 230 |
| Msa0110360 | AT5G43980.1 | 32.857 | 280 | 116 | 6 | 81 | 289 | 22 | 300 | 3.89e-36 | 131 |
| Msa0110360 | AT3G60720.3 | 27.481 | 262 | 117 | 5 | 87 | 285 | 29 | 280 | 8.76e-22 | 92.8 |
| Msa0110360 | AT3G60720.1 | 27.519 | 258 | 114 | 5 | 87 | 281 | 29 | 276 | 2.96e-21 | 91.3 |
| Msa0110360 | AT2G01660.3 | 26.316 | 285 | 139 | 7 | 55 | 278 | 2 | 276 | 2.33e-20 | 89.0 |
| Msa0110360 | AT2G01660.1 | 26.316 | 285 | 139 | 7 | 55 | 278 | 2 | 276 | 2.70e-20 | 89.0 |
| Msa0110360 | AT5G37660.2 | 26.962 | 293 | 153 | 5 | 51 | 289 | 4 | 289 | 2.11e-19 | 86.7 |
| Msa0110360 | AT3G04370.1 | 35.507 | 138 | 75 | 2 | 61 | 184 | 8 | 145 | 2.97e-19 | 86.3 |
| Msa0110360 | AT3G04370.1 | 38.889 | 108 | 61 | 2 | 181 | 288 | 216 | 318 | 5.12e-17 | 80.1 |
| Msa0110360 | AT3G04370.2 | 35.507 | 138 | 75 | 2 | 61 | 184 | 8 | 145 | 3.25e-19 | 86.3 |
| Msa0110360 | AT3G04370.2 | 38.889 | 108 | 61 | 2 | 181 | 288 | 215 | 317 | 5.02e-17 | 80.1 |
| Msa0110360 | AT5G37660.1 | 25.830 | 271 | 140 | 5 | 51 | 267 | 4 | 267 | 1.29e-18 | 84.3 |
| Msa0110360 | AT1G70690.1 | 24.399 | 291 | 152 | 7 | 61 | 288 | 9 | 294 | 5.12e-15 | 74.3 |
| Msa0110360 | AT2G01660.2 | 24.400 | 250 | 121 | 7 | 55 | 246 | 2 | 241 | 9.44e-15 | 72.8 |
| Msa0110360 | AT3G60720.2 | 25.221 | 226 | 100 | 4 | 87 | 253 | 29 | 244 | 1.16e-14 | 72.4 |
Find 70 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTAGTGGATGAAAATTT+TGG | 0.094651 | 1_3:-23183647 | Msa0110360:three_prime_UTR |
| AAATCTGCATACCTGATATT+TGG | 0.131490 | 1_3:+23185762 | None:intergenic |
| TTCATTGACTTTAATGCTTT+TGG | 0.167176 | 1_3:-23183561 | Msa0110360:three_prime_UTR |
| GCACATGTCCTAAGGCTTTA+AGG | 0.191959 | 1_3:-23186321 | Msa0110360:CDS |
| CAAAATTTGTTGGACAAAAT+TGG | 0.199965 | 1_3:+23185854 | None:intergenic |
| TAGAATAAATGAAAGAAATA+TGG | 0.209647 | 1_3:+23186153 | None:intergenic |
| TACATTTCAGCTTATTTATA+AGG | 0.222399 | 1_3:-23183819 | Msa0110360:three_prime_UTR |
| GCTGCAAGAGTTCAACTTCT+TGG | 0.248312 | 1_3:-23185818 | Msa0110360:CDS |
| GAATGTGGCAACTCTATTTC+TGG | 0.253750 | 1_3:-23184739 | Msa0110360:CDS |
| ACAAACCAGTTATACTGTTT+TGG | 0.290553 | 1_3:+23185933 | None:intergenic |
| TTGTAATTACATAGATCTTC+TGG | 0.294494 | 1_3:-23183709 | Msa0110360:three_prime_UTR |
| CATAAGTGTTTCATTAGTTA+TGG | 0.313486 | 1_3:-23184703 | Msa0110360:CDS |
| TATCTTCCACAGATTATTGA+TGG | 0.332558 | 1_3:-23183897 | Msa0110360:intron |
| CCAACTAGTATAAATCAAAA+AGG | 0.366973 | 1_3:+23183423 | None:intergenic |
| GCACAATGTGAAGGTGATAT+TGG | 0.371110 | 1_3:-23184814 | Msa0110360:intron |
| AATCTGCATACCTGATATTT+GGG | 0.386006 | 1_3:+23185763 | None:intergenic |
| GCTGGTTATACCCAAATATC+AGG | 0.389407 | 1_3:-23185773 | Msa0110360:intron |
| CACATGGCTCAACAAGGATA+TGG | 0.389422 | 1_3:+23183622 | None:intergenic |
| AGTGGCCAAAACAGTATAAC+TGG | 0.391004 | 1_3:-23185938 | Msa0110360:CDS |
| GTTTGTGAGTATATTCCATT+TGG | 0.392368 | 1_3:+23186031 | None:intergenic |
| TATCTACTATATGAAGTTGC+TGG | 0.393316 | 1_3:-23185791 | Msa0110360:CDS |
| TTGGATAGCCTTAAAGCCTT+AGG | 0.394887 | 1_3:+23186313 | None:intergenic |
| TGTCTAGATGGAACTCCATT+AGG | 0.401134 | 1_3:+23184673 | None:intergenic |
| TCTATGATTCTATGTATTTG+AGG | 0.408904 | 1_3:+23183463 | None:intergenic |
| CTATGATTCTATGTATTTGA+GGG | 0.421975 | 1_3:+23183464 | None:intergenic |
| TATTATTTGACATTCCTTAG+TGG | 0.425284 | 1_3:-23183660 | Msa0110360:three_prime_UTR |
| AGTTATGGCTATTATCCTAA+TGG | 0.427351 | 1_3:-23184688 | Msa0110360:CDS |
| CAAACACTTTCTACACTCCT+TGG | 0.431163 | 1_3:-23186013 | Msa0110360:CDS |
| TAAATAGAGCTTGACTGGTT+TGG | 0.437808 | 1_3:-23183769 | Msa0110360:three_prime_UTR |
| AGAATAAATGAAAGAAATAT+GGG | 0.443988 | 1_3:+23186154 | None:intergenic |
| GCAATGACAGGGCAAGATCC+AGG | 0.447894 | 1_3:-23184105 | Msa0110360:intron |
| TGTGGTAAATAGAGCTTGAC+TGG | 0.450225 | 1_3:-23183774 | Msa0110360:three_prime_UTR |
| ATAATACTAGGAGGAATTGC+TGG | 0.462780 | 1_3:-23184069 | Msa0110360:CDS |
| TTATAAGGATGAATGAAAGC+TGG | 0.467474 | 1_3:-23183804 | Msa0110360:three_prime_UTR |
| GAATATGAAGAATGTCTAGA+TGG | 0.470370 | 1_3:+23184661 | None:intergenic |
| GTAGAGAAAGACATAAAGCT+AGG | 0.475389 | 1_3:+23183487 | None:intergenic |
| AAATTCTATAAAACCACTAC+TGG | 0.477222 | 1_3:-23185962 | Msa0110360:CDS |
| GTTCTTACCTGAAGAAAATG+AGG | 0.485674 | 1_3:+23184639 | None:intergenic |
| TTATATTCTTGCTATTTGCT+AGG | 0.498339 | 1_3:-23184032 | Msa0110360:CDS |
| CTGGTTTGTTCCAATGTAGA+GGG | 0.509794 | 1_3:-23185919 | Msa0110360:CDS |
| ATCCATCTGCACATGTCCTA+AGG | 0.525034 | 1_3:-23186329 | Msa0110360:CDS |
| GATATTGGTGATTCTGATTG+TGG | 0.528519 | 1_3:-23184799 | Msa0110360:CDS |
| GGAAGTGCTAAATGTTCAGA+AGG | 0.528755 | 1_3:-23183688 | Msa0110360:three_prime_UTR |
| AAAACAGCTGCTATAATACT+AGG | 0.532912 | 1_3:-23184081 | Msa0110360:CDS |
| TATAAAACCACTACTGGTAG+TGG | 0.547424 | 1_3:-23185956 | Msa0110360:CDS |
| ACATAGAATCATAGAAGTTG+AGG | 0.548149 | 1_3:-23183455 | Msa0110360:three_prime_UTR |
| CATATCCTTGTTGAGCCATG+TGG | 0.554260 | 1_3:-23183621 | Msa0110360:three_prime_UTR |
| ACATGTGCAGATGGATGAGT+TGG | 0.556192 | 1_3:+23186336 | None:intergenic |
| ACTGGTTTGTTCCAATGTAG+AGG | 0.558068 | 1_3:-23185920 | Msa0110360:CDS |
| GAAGAAGATTCTGCAAAATG+AGG | 0.561722 | 1_3:+23186106 | None:intergenic |
| GAAGATTCTGCAAAATGAGG+TGG | 0.568669 | 1_3:+23186109 | None:intergenic |
| TAGAGAAAGACATAAAGCTA+GGG | 0.570373 | 1_3:+23183488 | None:intergenic |
| AGCCTTAGGACATGTGCAGA+TGG | 0.576424 | 1_3:+23186327 | None:intergenic |
| TAGTGAGATCCCCTCTACAT+TGG | 0.590991 | 1_3:+23185909 | None:intergenic |
| TACACTACATTAGTCTACAA+AGG | 0.596329 | 1_3:-23186079 | Msa0110360:CDS |
| ACTAGGAGGAATTGCTGGAG+TGG | 0.599765 | 1_3:-23184064 | Msa0110360:CDS |
| AAGATTCTGCAAAATGAGGT+GGG | 0.604435 | 1_3:+23186110 | None:intergenic |
| CAATGACAGGGCAAGATCCA+GGG | 0.608246 | 1_3:-23184104 | Msa0110360:intron |
| TATGATTCTATGTATTTGAG+GGG | 0.618896 | 1_3:+23183465 | None:intergenic |
| CAAAGAGCTCAAGTTGAATG+TGG | 0.620507 | 1_3:-23184754 | Msa0110360:CDS |
| ATATCCTTGTTGAGCCATGT+GGG | 0.628446 | 1_3:-23183620 | Msa0110360:three_prime_UTR |
| ACAGCTGCTATAATACTAGG+AGG | 0.630493 | 1_3:-23184078 | Msa0110360:CDS |
| GTCACCCACATGGCTCAACA+AGG | 0.644411 | 1_3:+23183616 | None:intergenic |
| AAATAACAGTGTCACCCACA+TGG | 0.648812 | 1_3:+23183606 | None:intergenic |
| CATGTGCAGATGGATGAGTT+GGG | 0.649048 | 1_3:+23186337 | None:intergenic |
| GCTGAAAATAATTTGTGACA+AGG | 0.655558 | 1_3:-23183871 | Msa0110360:three_prime_UTR |
| TGGTTTGTTCCAATGTAGAG+GGG | 0.663909 | 1_3:-23185918 | Msa0110360:CDS |
| GAAGTGCTAAATGTTCAGAA+GGG | 0.686103 | 1_3:-23183687 | Msa0110360:three_prime_UTR |
| AATTTGACAAAGAAACACAA+TGG | 0.727029 | 1_3:-23184009 | Msa0110360:intron |
| ATTGTGAAACTAGTGAACCA+AGG | 0.728041 | 1_3:+23185996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATAATAATTTGAAAAAA+TGG | - | chr1_3:23184106-23184125 | Msa0110360:intron | 10.0% |
| !! | ATATATAAATATAATAAGTG+GGG | - | chr1_3:23184224-23184243 | Msa0110360:intron | 10.0% |
| !! | AGAATAAATGAAAGAAATAT+GGG | + | chr1_3:23183622-23183641 | None:intergenic | 15.0% |
| !! | TAGAATAAATGAAAGAAATA+TGG | + | chr1_3:23183623-23183642 | None:intergenic | 15.0% |
| !! | ATTATAAAAAAATTCAACGA+CGG | - | chr1_3:23184259-23184278 | Msa0110360:intron | 15.0% |
| !!! | TTTTTATACAACAAACTATA+TGG | - | chr1_3:23184922-23184941 | Msa0110360:intron | 15.0% |
| !!! | TAAAATATCAATTTAGTTCA+TGG | - | chr1_3:23185329-23185348 | Msa0110360:intron | 15.0% |
| !!! | TTTATAGAATTTTGTTTTGG+TGG | + | chr1_3:23183803-23183822 | None:intergenic | 20.0% |
| !!! | GGTTTTATAGAATTTTGTTT+TGG | + | chr1_3:23183806-23183825 | None:intergenic | 20.0% |
| !! | AGAGATTAAATTAAAGTTAG+TGG | + | chr1_3:23184201-23184220 | None:intergenic | 20.0% |
| !! | AAAATAAGTGTCAATTTGTA+TGG | - | chr1_3:23185207-23185226 | Msa0110360:intron | 20.0% |
| !!! | ATTTTGAAATATTGATGATG+TGG | - | chr1_3:23185547-23185566 | Msa0110360:intron | 20.0% |
| !! | TACATTTCAGCTTATTTATA+AGG | - | chr1_3:23185954-23185973 | Msa0110360:CDS | 20.0% |
| !! | AAAAACTAGAAAATTGAAGA+GGG | + | chr1_3:23186194-23186213 | None:intergenic | 20.0% |
| !!! | GTTGTTAAGGATTTGTTATA+TGG | + | chr1_3:23183521-23183540 | None:intergenic | 25.0% |
| !!! | GAAAATCTTTGAAGTTGTTA+AGG | + | chr1_3:23183534-23183553 | None:intergenic | 25.0% |
| !! | ATCAAATCATTGCAATTTTG+AGG | + | chr1_3:23183556-23183575 | None:intergenic | 25.0% |
| !! | TGAAAGAAATATGGGTTTTA+AGG | + | chr1_3:23183614-23183633 | None:intergenic | 25.0% |
| !! | GAAACTTTTATAGATCCAAA+TGG | - | chr1_3:23183727-23183746 | Msa0110360:three_prime_UTR | 25.0% |
| ! | AAATTCTATAAAACCACTAC+TGG | - | chr1_3:23183811-23183830 | Msa0110360:three_prime_UTR | 25.0% |
| !!! | CAAAATTTGTTGGACAAAAT+TGG | + | chr1_3:23183922-23183941 | None:intergenic | 25.0% |
| !! | ATTTTGTCCAACAAATTTTG+TGG | - | chr1_3:23183922-23183941 | Msa0110360:intron | 25.0% |
| ! | TTTAGTGTTTAAACTATCAG+TGG | - | chr1_3:23184056-23184075 | Msa0110360:CDS | 25.0% |
| !! | ATGTCATGAGTTTTTACTTT+CGG | + | chr1_3:23184298-23184317 | None:intergenic | 25.0% |
| ! | TTTCATAATTAGTGCTAAGA+TGG | - | chr1_3:23184319-23184338 | Msa0110360:intron | 25.0% |
| ! | ATAAAATCGGTCAAAATAGT+CGG | + | chr1_3:23184614-23184633 | None:intergenic | 25.0% |
| ! | GCGTATGAAGTATATAAAAT+CGG | + | chr1_3:23184627-23184646 | None:intergenic | 25.0% |
| !!! | ACAAGTTTTGTACAAATGTT+AGG | - | chr1_3:23184785-23184804 | Msa0110360:CDS | 25.0% |
| !! | CTATATGGCATTTTATGTTT+TGG | - | chr1_3:23184937-23184956 | Msa0110360:intron | 25.0% |
| ! | CATAAGTGTTTCATTAGTTA+TGG | - | chr1_3:23185070-23185089 | Msa0110360:intron | 25.0% |
| ! | TAACCAACATTTGTCATAAA+GGG | + | chr1_3:23185265-23185284 | None:intergenic | 25.0% |
| ! | TTAACCAACATTTGTCATAA+AGG | + | chr1_3:23185266-23185285 | None:intergenic | 25.0% |
| !!! | CTTATTTTTGGTGATCAATT+TGG | + | chr1_3:23185368-23185387 | None:intergenic | 25.0% |
| !!! | TACATCCACTTACTTATTTT+TGG | + | chr1_3:23185380-23185399 | None:intergenic | 25.0% |
| ! | AAATAAGTAAGTGGATGTAA+TGG | - | chr1_3:23185381-23185400 | Msa0110360:intron | 25.0% |
| !! | ATGTAATGGTTGATATTTGT+AGG | - | chr1_3:23185395-23185414 | Msa0110360:intron | 25.0% |
| !! | AAGATGAATTTGAAACTAAG+TGG | - | chr1_3:23185447-23185466 | Msa0110360:intron | 25.0% |
| !! | TTGATAATAATTTCAAACCG+AGG | - | chr1_3:23185488-23185507 | Msa0110360:intron | 25.0% |
| ! | TGATAATAATTTCAAACCGA+GGG | - | chr1_3:23185489-23185508 | Msa0110360:intron | 25.0% |
| ! | CTTAACCATTGGAAAATTTA+GGG | + | chr1_3:23185602-23185621 | None:intergenic | 25.0% |
| !!! | TTATATTCTTGCTATTTGCT+AGG | - | chr1_3:23185741-23185760 | Msa0110360:intron | 25.0% |
| ! | AATTTGACAAAGAAACACAA+TGG | - | chr1_3:23185764-23185783 | Msa0110360:intron | 25.0% |
| ! | TTGTAATTACATAGATCTTC+TGG | - | chr1_3:23186064-23186083 | Msa0110360:CDS | 25.0% |
| ! | TATTATTTGACATTCCTTAG+TGG | - | chr1_3:23186113-23186132 | Msa0110360:CDS | 25.0% |
| ! | GAAAAACTAGAAAATTGAAG+AGG | + | chr1_3:23186195-23186214 | None:intergenic | 25.0% |
| !!! | TTCATTGACTTTAATGCTTT+TGG | - | chr1_3:23186212-23186231 | Msa0110360:CDS | 25.0% |
| ! | TATGATTCTATGTATTTGAG+GGG | + | chr1_3:23186311-23186330 | None:intergenic | 25.0% |
| ! | CTATGATTCTATGTATTTGA+GGG | + | chr1_3:23186312-23186331 | None:intergenic | 25.0% |
| ! | TCTATGATTCTATGTATTTG+AGG | + | chr1_3:23186313-23186332 | None:intergenic | 25.0% |
| ! | CCAACTAGTATAAATCAAAA+AGG | + | chr1_3:23186353-23186372 | None:intergenic | 25.0% |
| !!! | CCTTTTTGATTTATACTAGT+TGG | - | chr1_3:23186350-23186369 | Msa0110360:CDS | 25.0% |
| ! | AGGTGGGATTAAATTTTCTT+TGG | + | chr1_3:23183482-23183501 | None:intergenic | 30.0% |
| !!! | TTTGTTATATGGTTTTGTGG+TGG | + | chr1_3:23183510-23183529 | None:intergenic | 30.0% |
| !!! | GGATTTGTTATATGGTTTTG+TGG | + | chr1_3:23183513-23183532 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTGTGTAGTAGTA+AGG | + | chr1_3:23183580-23183599 | None:intergenic | 30.0% |
| ! | TACACTACATTAGTCTACAA+AGG | - | chr1_3:23183694-23183713 | Msa0110360:three_prime_UTR | 30.0% |
| GTTTGTGAGTATATTCCATT+TGG | + | chr1_3:23183745-23183764 | None:intergenic | 30.0% | |
| ! | ACAAACCAGTTATACTGTTT+TGG | + | chr1_3:23183843-23183862 | None:intergenic | 30.0% |
| ! | AGTTTTGCCACAAAATTTGT+TGG | + | chr1_3:23183932-23183951 | None:intergenic | 30.0% |
| TATCTACTATATGAAGTTGC+TGG | - | chr1_3:23183982-23184001 | Msa0110360:intron | 30.0% | |
| AATCTGCATACCTGATATTT+GGG | + | chr1_3:23184013-23184032 | None:intergenic | 30.0% | |
| AAATCTGCATACCTGATATT+TGG | + | chr1_3:23184014-23184033 | None:intergenic | 30.0% | |
| TTCCAATTGTAAAAATGACG+AGG | - | chr1_3:23184425-23184444 | Msa0110360:intron | 30.0% | |
| TATGGACAACTGCTTAAAAT+AGG | + | chr1_3:23184509-23184528 | None:intergenic | 30.0% | |
| TAAAATCGGTCAAAATAGTC+GGG | + | chr1_3:23184613-23184632 | None:intergenic | 30.0% | |
| TAGAACGACTCAATTGAAAA+GGG | - | chr1_3:23184662-23184681 | Msa0110360:CDS | 30.0% | |
| ACATAGTTCAAATTCTTACG+AGG | + | chr1_3:23184725-23184744 | None:intergenic | 30.0% | |
| AGTTATGGCTATTATCCTAA+TGG | - | chr1_3:23185085-23185104 | Msa0110360:intron | 30.0% | |
| GAATATGAAGAATGTCTAGA+TGG | + | chr1_3:23185115-23185134 | None:intergenic | 30.0% | |
| ! | TCATATTCCTCATTTTCTTC+AGG | - | chr1_3:23185127-23185146 | Msa0110360:intron | 30.0% |
| CTAATGTTAAAACCTACAGA+TGG | - | chr1_3:23185156-23185175 | Msa0110360:intron | 30.0% | |
| ! | CTTTTCCAAACACCAAATTT+TGG | + | chr1_3:23185184-23185203 | None:intergenic | 30.0% |
| !! | CAAAATTTGGTGTTTGGAAA+AGG | - | chr1_3:23185182-23185201 | Msa0110360:intron | 30.0% |
| GATCACCAAAAATAAGTAAG+TGG | - | chr1_3:23185372-23185391 | Msa0110360:intron | 30.0% | |
| CCTTAACCATTGGAAAATTT+AGG | + | chr1_3:23185603-23185622 | None:intergenic | 30.0% | |
| ! | CCTAAATTTTCCAATGGTTA+AGG | - | chr1_3:23185600-23185619 | Msa0110360:intron | 30.0% |
| ! | TTTTCCAATGGTTAAGGAAA+AGG | - | chr1_3:23185606-23185625 | Msa0110360:intron | 30.0% |
| !! | TATTGATTTGATGCAATGAC+AGG | - | chr1_3:23185656-23185675 | Msa0110360:intron | 30.0% |
| !! | ATTGATTTGATGCAATGACA+GGG | - | chr1_3:23185657-23185676 | Msa0110360:intron | 30.0% |
| AAAACAGCTGCTATAATACT+AGG | - | chr1_3:23185692-23185711 | Msa0110360:intron | 30.0% | |
| TATCTTCCACAGATTATTGA+TGG | - | chr1_3:23185876-23185895 | Msa0110360:CDS | 30.0% | |
| ! | GCTGAAAATAATTTGTGACA+AGG | - | chr1_3:23185902-23185921 | Msa0110360:CDS | 30.0% |
| TTATAAGGATGAATGAAAGC+TGG | - | chr1_3:23185969-23185988 | Msa0110360:CDS | 30.0% | |
| ! | ATGAAAGCTGGAAATTTTTG+TGG | - | chr1_3:23185981-23186000 | Msa0110360:CDS | 30.0% |
| !! | TCCTTAGTGGATGAAAATTT+TGG | - | chr1_3:23186126-23186145 | Msa0110360:CDS | 30.0% |
| !! | CCTTAGTGGATGAAAATTTT+GGG | - | chr1_3:23186127-23186146 | Msa0110360:CDS | 30.0% |
| !! | CTTAGTGGATGAAAATTTTG+GGG | - | chr1_3:23186128-23186147 | Msa0110360:CDS | 30.0% |
| !!! | TTGTTTTTGAGCAATGCTTT+TGG | - | chr1_3:23186242-23186261 | Msa0110360:intron | 30.0% |
| TAGAGAAAGACATAAAGCTA+GGG | + | chr1_3:23186288-23186307 | None:intergenic | 30.0% | |
| ACATAGAATCATAGAAGTTG+AGG | - | chr1_3:23186318-23186337 | Msa0110360:CDS | 30.0% | |
| AAGATTCTGCAAAATGAGGT+GGG | + | chr1_3:23183666-23183685 | None:intergenic | 35.0% | |
| GAAGAAGATTCTGCAAAATG+AGG | + | chr1_3:23183670-23183689 | None:intergenic | 35.0% | |
| ATTGTGAAACTAGTGAACCA+AGG | + | chr1_3:23183780-23183799 | None:intergenic | 35.0% | |
| TATAAAACCACTACTGGTAG+TGG | - | chr1_3:23183817-23183836 | Msa0110360:three_prime_UTR | 35.0% | |
| AGTGTTTAAACTATCAGTGG+TGG | - | chr1_3:23184059-23184078 | Msa0110360:CDS | 35.0% | |
| ! | AAACTATCAGTGGTGGAAAA+TGG | - | chr1_3:23184066-23184085 | Msa0110360:CDS | 35.0% |
| ! | AACTATCAGTGGTGGAAAAT+GGG | - | chr1_3:23184067-23184086 | Msa0110360:CDS | 35.0% |
| !!! | GTCCTCGTCATTTTTACAAT+TGG | + | chr1_3:23184430-23184449 | None:intergenic | 35.0% |
| ! | CTCTTGGTAGTAGATGTTAA+TGG | + | chr1_3:23184452-23184471 | None:intergenic | 35.0% |
| ! | TTTTAAGCAGTTGTCCATAG+TGG | - | chr1_3:23184510-23184529 | Msa0110360:intron | 35.0% |
| ATATAGACCTCCTTCATAAG+TGG | + | chr1_3:23184537-23184556 | None:intergenic | 35.0% | |
| ! | GTCTCTGAAGAATGTGTAAT+CGG | - | chr1_3:23184577-23184596 | Msa0110360:intron | 35.0% |
| GAATGTGTAATCGGTCAATT+TGG | - | chr1_3:23184586-23184605 | Msa0110360:intron | 35.0% | |
| GTAGAACGACTCAATTGAAA+AGG | - | chr1_3:23184661-23184680 | Msa0110360:CDS | 35.0% | |
| AGAACGACTCAATTGAAAAG+GGG | - | chr1_3:23184663-23184682 | Msa0110360:CDS | 35.0% | |
| CTTACAAGATCGAACTCTTT+CGG | - | chr1_3:23184754-23184773 | Msa0110360:CDS | 35.0% | |
| AGATGCTCTATAAGACTTGT+GGG | - | chr1_3:23184813-23184832 | Msa0110360:intron | 35.0% | |
| ATAACAAATGTTGCTGGAAG+TGG | - | chr1_3:23184836-23184855 | Msa0110360:intron | 35.0% | |
| CTTTATCAGCGATGGAAAAT+GGG | - | chr1_3:23184882-23184901 | Msa0110360:intron | 35.0% | |
| TTTATCAGCGATGGAAAATG+GGG | - | chr1_3:23184883-23184902 | Msa0110360:intron | 35.0% | |
| !!! | TATGTTTTGGCACAATGTGA+AGG | - | chr1_3:23184950-23184969 | Msa0110360:intron | 35.0% |
| ! | GATATTGGTGATTCTGATTG+TGG | - | chr1_3:23184974-23184993 | Msa0110360:intron | 35.0% |
| GTTCTTACCTGAAGAAAATG+AGG | + | chr1_3:23185137-23185156 | None:intergenic | 35.0% | |
| !!! | CAAATTTTGGTTCCATCTGT+AGG | + | chr1_3:23185171-23185190 | None:intergenic | 35.0% |
| CTACAGATGGAACCAAAATT+TGG | - | chr1_3:23185169-23185188 | Msa0110360:intron | 35.0% | |
| !! | TGGAACCAAAATTTGGTGTT+TGG | - | chr1_3:23185176-23185195 | Msa0110360:intron | 35.0% |
| AACATTTGTCATAAAGGGCA+AGG | + | chr1_3:23185260-23185279 | None:intergenic | 35.0% | |
| TTGCCCTTTATGACAAATGT+TGG | - | chr1_3:23185259-23185278 | Msa0110360:intron | 35.0% | |
| ! | TTTTAATCGAGTTTGTCCCT+CGG | + | chr1_3:23185508-23185527 | None:intergenic | 35.0% |
| ! | AGTACCTTTTCCTTAACCAT+TGG | + | chr1_3:23185613-23185632 | None:intergenic | 35.0% |
| ATAATACTAGGAGGAATTGC+TGG | - | chr1_3:23185704-23185723 | Msa0110360:intron | 35.0% | |
| ! | TAAATAGAGCTTGACTGGTT+TGG | - | chr1_3:23186004-23186023 | Msa0110360:CDS | 35.0% |
| ! | GAAGTGCTAAATGTTCAGAA+GGG | - | chr1_3:23186086-23186105 | Msa0110360:CDS | 35.0% |
| ! | CCCAAAATTTTCATCCACTA+AGG | + | chr1_3:23186130-23186149 | None:intergenic | 35.0% |
| GTAGAGAAAGACATAAAGCT+AGG | + | chr1_3:23186289-23186308 | None:intergenic | 35.0% | |
| ! | TTGGATAGCCTTAAAGCCTT+AGG | + | chr1_3:23183463-23183482 | None:intergenic | 40.0% |
| GAAGATTCTGCAAAATGAGG+TGG | + | chr1_3:23183667-23183686 | None:intergenic | 40.0% | |
| CAAACACTTTCTACACTCCT+TGG | - | chr1_3:23183760-23183779 | Msa0110360:three_prime_UTR | 40.0% | |
| AGTGGCCAAAACAGTATAAC+TGG | - | chr1_3:23183835-23183854 | Msa0110360:three_prime_UTR | 40.0% | |
| !! | ACTGGTTTGTTCCAATGTAG+AGG | - | chr1_3:23183853-23183872 | Msa0110360:three_prime_UTR | 40.0% |
| !! | CTGGTTTGTTCCAATGTAGA+GGG | - | chr1_3:23183854-23183873 | Msa0110360:three_prime_UTR | 40.0% |
| !! | TGGTTTGTTCCAATGTAGAG+GGG | - | chr1_3:23183855-23183874 | Msa0110360:three_prime_UTR | 40.0% |
| GCTGGTTATACCCAAATATC+AGG | - | chr1_3:23184000-23184019 | Msa0110360:intron | 40.0% | |
| ! | ACTATCAGTGGTGGAAAATG+GGG | - | chr1_3:23184068-23184087 | Msa0110360:CDS | 40.0% |
| GATGGTGACTAGATTGTTGT+TGG | - | chr1_3:23184337-23184356 | Msa0110360:intron | 40.0% | |
| GAACGACTCAATTGAAAAGG+GGG | - | chr1_3:23184664-23184683 | Msa0110360:CDS | 40.0% | |
| CAGATGCTCTATAAGACTTG+TGG | - | chr1_3:23184812-23184831 | Msa0110360:intron | 40.0% | |
| TGTGGGATAACAAATGTTGC+TGG | - | chr1_3:23184830-23184849 | Msa0110360:intron | 40.0% | |
| ! | AATGTTGCTGGAAGTGGTTT+TGG | - | chr1_3:23184842-23184861 | Msa0110360:intron | 40.0% |
| ! | ATGTTGCTGGAAGTGGTTTT+GGG | - | chr1_3:23184843-23184862 | Msa0110360:intron | 40.0% |
| GCTTTATCAGCGATGGAAAA+TGG | - | chr1_3:23184881-23184900 | Msa0110360:intron | 40.0% | |
| ATGGAAAATGGGGTTGTTAG+TGG | - | chr1_3:23184893-23184912 | Msa0110360:intron | 40.0% | |
| GCACAATGTGAAGGTGATAT+TGG | - | chr1_3:23184959-23184978 | Msa0110360:intron | 40.0% | |
| !! | CAAAGAGCTCAAGTTGAATG+TGG | - | chr1_3:23185019-23185038 | Msa0110360:intron | 40.0% |
| GAATGTGGCAACTCTATTTC+TGG | - | chr1_3:23185034-23185053 | Msa0110360:intron | 40.0% | |
| TGTCTAGATGGAACTCCATT+AGG | + | chr1_3:23185103-23185122 | None:intergenic | 40.0% | |
| ! | CTGCTCCCTAAATTTTCCAA+TGG | - | chr1_3:23185594-23185613 | Msa0110360:intron | 40.0% |
| !! | ATTATAGCAGCTGTTTTCCC+TGG | + | chr1_3:23185689-23185708 | None:intergenic | 40.0% |
| ACAGCTGCTATAATACTAGG+AGG | - | chr1_3:23185695-23185714 | Msa0110360:intron | 40.0% | |
| AGCATGCCATCAATAATCTG+TGG | + | chr1_3:23185885-23185904 | None:intergenic | 40.0% | |
| TGTGGTAAATAGAGCTTGAC+TGG | - | chr1_3:23185999-23186018 | Msa0110360:CDS | 40.0% | |
| !! | GGAAGTGCTAAATGTTCAGA+AGG | - | chr1_3:23186085-23186104 | Msa0110360:CDS | 40.0% |
| ATATCCTTGTTGAGCCATGT+GGG | - | chr1_3:23186153-23186172 | Msa0110360:CDS | 40.0% | |
| AAATAACAGTGTCACCCACA+TGG | + | chr1_3:23186170-23186189 | None:intergenic | 40.0% | |
| CATGTGCAGATGGATGAGTT+GGG | + | chr1_3:23183439-23183458 | None:intergenic | 45.0% | |
| ACATGTGCAGATGGATGAGT+TGG | + | chr1_3:23183440-23183459 | None:intergenic | 45.0% | |
| ATCCATCTGCACATGTCCTA+AGG | - | chr1_3:23183444-23183463 | Msa0110360:three_prime_UTR | 45.0% | |
| GCACATGTCCTAAGGCTTTA+AGG | - | chr1_3:23183452-23183471 | Msa0110360:three_prime_UTR | 45.0% | |
| !! | TTTTGTGGTGGTGAGAAGGT+GGG | + | chr1_3:23183498-23183517 | None:intergenic | 45.0% |
| !!! | ATGGTTTTGTGGTGGTGAGA+AGG | + | chr1_3:23183502-23183521 | None:intergenic | 45.0% |
| TAGTGAGATCCCCTCTACAT+TGG | + | chr1_3:23183867-23183886 | None:intergenic | 45.0% | |
| GCTGCAAGAGTTCAACTTCT+TGG | - | chr1_3:23183955-23183974 | Msa0110360:intron | 45.0% | |
| ACAGACATCACATCGTCTCT+TGG | + | chr1_3:23184468-23184487 | None:intergenic | 45.0% | |
| TGTGATGTCTGTCATAGACG+AGG | - | chr1_3:23184476-23184495 | Msa0110360:intron | 45.0% | |
| CCTTCATAAGTGGTCCACTA+TGG | + | chr1_3:23184527-23184546 | None:intergenic | 45.0% | |
| !! | CCATAGTGGACCACTTATGA+AGG | - | chr1_3:23184524-23184543 | Msa0110360:intron | 45.0% |
| ! | TAGTGGACCACTTATGAAGG+AGG | - | chr1_3:23184527-23184546 | Msa0110360:intron | 45.0% |
| !! | TGTTGCTGGAAGTGGTTTTG+GGG | - | chr1_3:23184844-23184863 | Msa0110360:intron | 45.0% |
| AATGGGGTTGTTAGTGGTCA+TGG | - | chr1_3:23184899-23184918 | Msa0110360:intron | 45.0% | |
| CACATGGCTCAACAAGGATA+TGG | + | chr1_3:23186154-23186173 | None:intergenic | 45.0% | |
| CATATCCTTGTTGAGCCATG+TGG | - | chr1_3:23186152-23186171 | Msa0110360:CDS | 45.0% | |
| !! | AAATATATAAATATAATAAG+TGG | - | chr1_3:23184222-23184241 | Msa0110360:intron | 5.0% |
| !! | AATATATAAATATAATAAGT+GGG | - | chr1_3:23184223-23184242 | Msa0110360:intron | 5.0% |
| AGCCTTAGGACATGTGCAGA+TGG | + | chr1_3:23183449-23183468 | None:intergenic | 50.0% | |
| !! | GTTTTGTGGTGGTGAGAAGG+TGG | + | chr1_3:23183499-23183518 | None:intergenic | 50.0% |
| !! | GTTTTGGCCACTACCAGTAG+TGG | + | chr1_3:23183827-23183846 | None:intergenic | 50.0% |
| !! | CACTTTTGATGGACGACGTG+TGG | + | chr1_3:23184169-23184188 | None:intergenic | 50.0% |
| ! | ACGTCGTCCATCAAAAGTGC+TGG | - | chr1_3:23184170-23184189 | Msa0110360:intron | 50.0% |
| !! | CGTCGTCCATCAAAAGTGCT+GGG | - | chr1_3:23184171-23184190 | Msa0110360:intron | 50.0% |
| !! | GTCGTCCATCAAAAGTGCTG+GGG | - | chr1_3:23184172-23184191 | Msa0110360:intron | 50.0% |
| ! | AGACGCTGCTTTATCAGCGA+TGG | - | chr1_3:23184874-23184893 | Msa0110360:intron | 50.0% |
| CAATGACAGGGCAAGATCCA+GGG | - | chr1_3:23185669-23185688 | Msa0110360:intron | 50.0% | |
| ACTAGGAGGAATTGCTGGAG+TGG | - | chr1_3:23185709-23185728 | Msa0110360:intron | 50.0% | |
| GTGATCACGCGTGTCTGTGT+CGG | - | chr1_3:23184140-23184159 | Msa0110360:intron | 55.0% | |
| ! | GGTAGCCCCAGCACTTTTGA+TGG | + | chr1_3:23184180-23184199 | None:intergenic | 55.0% |
| GCAATGACAGGGCAAGATCC+AGG | - | chr1_3:23185668-23185687 | Msa0110360:intron | 55.0% | |
| GTCACCCACATGGCTCAACA+AGG | + | chr1_3:23186160-23186179 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 23183406 | 23186389 | 23183406 | ID=Msa0110360;Name=Msa0110360 |
| chr1_3 | mRNA | 23183406 | 23186389 | 23183406 | ID=Msa0110360-mRNA-1;Parent=Msa0110360;Name=Msa0110360-mRNA-1;_AED=0.20;_eAED=0.20;_QI=15|0.75|0.8|1|0.5|0.4|5|494|289 |
| chr1_3 | exon | 23183406 | 23183907 | 23183406 | ID=Msa0110360-mRNA-1:exon:8126;Parent=Msa0110360-mRNA-1 |
| chr1_3 | exon | 23184010 | 23184117 | 23184010 | ID=Msa0110360-mRNA-1:exon:8125;Parent=Msa0110360-mRNA-1 |
| chr1_3 | exon | 23184647 | 23184823 | 23184647 | ID=Msa0110360-mRNA-1:exon:8124;Parent=Msa0110360-mRNA-1 |
| chr1_3 | exon | 23185774 | 23186249 | 23185774 | ID=Msa0110360-mRNA-1:exon:8123;Parent=Msa0110360-mRNA-1 |
| chr1_3 | exon | 23186274 | 23186389 | 23186274 | ID=Msa0110360-mRNA-1:exon:8122;Parent=Msa0110360-mRNA-1 |
| chr1_3 | five_prime_UTR | 23186375 | 23186389 | 23186375 | ID=Msa0110360-mRNA-1:five_prime_utr;Parent=Msa0110360-mRNA-1 |
| chr1_3 | CDS | 23186274 | 23186374 | 23186274 | ID=Msa0110360-mRNA-1:cds;Parent=Msa0110360-mRNA-1 |
| chr1_3 | CDS | 23185774 | 23186249 | 23185774 | ID=Msa0110360-mRNA-1:cds;Parent=Msa0110360-mRNA-1 |
| chr1_3 | CDS | 23184647 | 23184823 | 23184647 | ID=Msa0110360-mRNA-1:cds;Parent=Msa0110360-mRNA-1 |
| chr1_3 | CDS | 23184010 | 23184117 | 23184010 | ID=Msa0110360-mRNA-1:cds;Parent=Msa0110360-mRNA-1 |
| chr1_3 | CDS | 23183900 | 23183907 | 23183900 | ID=Msa0110360-mRNA-1:cds;Parent=Msa0110360-mRNA-1 |
| chr1_3 | three_prime_UTR | 23183406 | 23183899 | 23183406 | ID=Msa0110360-mRNA-1:three_prime_utr;Parent=Msa0110360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
