AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1214710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1214710 MtrunA17_Chr4g0063841 94.720 625 33 0 4 628 9 633 0.0 1146
Msa1214710 MtrunA17_Chr1g0149351 61.228 619 230 4 16 628 29 643 0.0 735
Msa1214710 MtrunA17_Chr3g0137771 55.648 602 259 3 29 627 44 640 0.0 639
Msa1214710 MtrunA17_Chr4g0063861 82.564 390 68 0 239 628 1 390 0.0 621
Msa1214710 MtrunA17_Chr4g0063861 24.812 399 242 9 162 531 2 371 5.89e-19 89.4
Msa1214710 MtrunA17_Chr4g0063861 23.729 295 190 7 147 409 92 383 4.06e-11 65.5
Msa1214710 MtrunA17_Chr4g0063851 82.530 166 16 3 7 166 12 170 5.53e-85 265
Msa1214710 MtrunA17_Chr2g0286991 26.552 580 365 16 59 592 11 575 8.56e-40 154
Msa1214710 MtrunA17_Chr2g0286991 26.407 462 300 10 162 620 153 577 3.59e-35 140
Msa1214710 MtrunA17_Chr2g0286991 27.873 409 283 11 214 620 127 525 6.67e-25 109
Msa1214710 MtrunA17_Chr2g0286991 29.856 278 160 5 139 413 340 585 7.78e-24 106
Msa1214710 MtrunA17_Chr2g0286991 28.435 313 210 6 162 469 281 584 7.07e-22 100
Msa1214710 MtrunA17_Chr7g0272131 28.764 445 282 11 149 581 184 605 5.36e-30 125
Msa1214710 MtrunA17_Chr7g0272131 26.496 468 274 14 177 615 135 561 1.98e-21 99.0
Msa1214710 MtrunA17_Chr7g0272131 26.263 297 186 6 160 455 399 663 3.55e-19 91.7
Msa1214710 MtrunA17_Chr1g0212071 24.706 425 277 11 57 473 18 407 8.43e-26 110
Msa1214710 MtrunA17_Chr1g0212071 25.587 426 280 11 90 503 10 410 9.24e-18 86.3
Msa1214710 MtrunA17_Chr1g0212071 23.469 294 195 6 344 609 94 385 3.67e-16 81.3
Msa1214710 MtrunA17_Chr1g0212071 31.122 196 131 4 423 617 94 286 5.26e-16 80.5
Msa1214710 MtrunA17_Chr4g0004901 27.021 470 299 16 124 578 179 619 1.66e-25 112
Msa1214710 MtrunA17_Chr4g0004901 26.250 480 316 15 162 614 135 603 1.77e-24 108
Msa1214710 MtrunA17_Chr4g0004901 29.204 339 203 10 161 498 366 668 2.91e-21 98.6
Msa1214710 MtrunA17_Chr8g0347711 27.174 368 223 10 55 398 11 357 5.27e-20 92.4
Msa1214710 MtrunA17_Chr3g0125671 31.183 186 102 2 196 381 123 282 7.10e-18 85.9
Msa1214710 MtrunA17_Chr3g0125671 32.877 146 71 3 129 250 140 282 7.83e-11 64.3
Msa1214710 MtrunA17_Chr4g0008501 22.719 581 389 21 44 592 30 582 4.04e-17 85.1
Msa1214710 MtrunA17_Chr1g0150971 24.883 426 245 15 174 578 339 710 6.81e-16 81.6
Msa1214710 MtrunA17_Chr1g0176031 30.204 245 153 5 160 394 90 326 1.14e-15 79.0
Msa1214710 MtrunA17_Chr1g0176031 21.321 333 198 8 175 501 52 326 1.45e-14 75.5
Msa1214710 MtrunA17_Chr1g0176031 29.918 244 160 8 330 572 107 340 1.63e-14 75.5
Msa1214710 MtrunA17_Chr1g0152951 24.444 360 207 10 210 565 134 432 1.34e-13 73.9
Msa1214710 MtrunA17_Chr1g0152951 37.190 121 72 3 163 281 320 438 4.93e-11 65.5
Msa1214710 MtrunA17_Chr1g0159531 33.333 153 95 3 129 280 128 274 1.69e-13 72.4
Msa1214710 MtrunA17_Chr1g0159531 28.505 214 141 3 159 360 100 313 7.38e-13 70.5
Msa1214710 MtrunA17_Chr4g0070541 26.744 258 181 7 331 585 397 649 1.72e-13 73.9
Msa1214710 MtrunA17_Chr8g0352431 23.617 470 296 17 166 603 131 569 3.36e-12 69.3
Msa1214710 MtrunA17_Chr8g0342371 23.649 444 307 15 166 592 136 564 3.51e-12 69.3
Msa1214710 MtrunA17_Chr4g0018891 25.532 329 208 13 214 540 189 482 8.86e-12 67.8
Msa1214710 MtrunA17_Chr5g0436511 25.000 392 221 18 161 513 145 502 1.53e-11 67.4
Msa1214710 MtrunA17_Chr1g0150991 23.472 409 246 15 174 578 155 500 1.73e-11 67.4
Msa1214710 MtrunA17_Chr5g0446541 23.640 478 316 14 167 620 98 550 2.17e-11 67.0
Msa1214710 MtrunA17_Chr3g0079141 22.836 543 311 21 18 539 11 466 2.19e-11 66.6
Msa1214710 MtrunA17_Chr2g0300611 24.324 259 164 5 355 585 400 654 2.46e-11 67.0
Msa1214710 MtrunA17_Chr4g0070521 24.254 268 185 7 331 585 28 290 2.89e-11 65.5
Msa1214710 MtrunA17_Chr7g0251831 28.780 205 121 9 182 369 315 511 5.34e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1214710 AT2G25490.1 51.975 633 281 7 2 628 13 628 0.0 642
Msa1214710 AT5G25350.1 52.456 631 280 7 2 627 7 622 0.0 606
Msa1214710 AT4G15475.1 28.328 586 347 19 59 592 11 575 3.50e-43 164
Msa1214710 AT4G15475.1 27.378 347 214 6 124 469 275 584 1.18e-27 118
Msa1214710 AT4G15475.1 26.957 345 220 6 162 506 281 593 2.98e-23 104
Msa1214710 AT4G15475.1 24.118 340 223 9 304 614 109 442 3.25e-16 82.8
Msa1214710 AT4G15475.1 30.769 156 103 3 138 293 443 593 5.57e-12 69.3
Msa1214710 AT5G27920.1 24.665 523 332 12 146 616 90 602 9.24e-28 119
Msa1214710 AT5G23340.1 24.941 421 280 8 57 473 8 396 7.30e-24 104
Msa1214710 AT5G23340.1 26.804 291 203 6 291 575 85 371 3.32e-21 97.1
Msa1214710 AT5G23340.1 31.658 199 132 4 423 620 84 279 1.13e-18 89.4
Msa1214710 AT5G01720.1 26.200 500 298 17 162 605 85 569 1.63e-22 102
Msa1214710 AT5G01720.1 23.604 394 236 5 161 531 238 589 2.77e-20 95.9
Msa1214710 AT5G01720.1 29.412 170 89 2 187 331 443 606 4.02e-11 66.6
Msa1214710 AT5G01720.1 20.924 368 236 9 157 500 260 596 4.69e-11 66.2
Msa1214710 AT1G21410.2 28.351 194 113 2 188 381 104 271 7.08e-17 83.2
Msa1214710 AT1G21410.2 27.004 237 110 5 162 371 130 330 7.26e-14 73.9
Msa1214710 AT1G21410.1 28.351 194 113 2 188 381 104 271 7.08e-17 83.2
Msa1214710 AT1G21410.1 27.004 237 110 5 162 371 130 330 7.26e-14 73.9
Msa1214710 AT1G80630.1 22.222 414 274 10 176 554 108 508 7.90e-16 81.3
Msa1214710 AT3G58530.1 27.132 258 154 7 140 394 102 328 2.21e-15 78.6
Msa1214710 AT3G58530.1 21.557 334 197 7 175 501 53 328 1.13e-13 73.2
Msa1214710 AT3G58530.1 26.749 243 151 7 385 603 112 351 4.39e-12 68.6
Msa1214710 AT1G47056.1 26.239 343 190 12 187 501 116 423 2.93e-15 79.3
Msa1214710 AT1G47056.1 33.918 171 102 5 119 287 260 421 1.37e-13 73.9
Msa1214710 AT1G77000.2 28.947 228 143 5 162 371 104 330 2.54e-14 75.5
Msa1214710 AT1G77000.2 28.877 187 121 6 446 623 99 282 4.34e-11 65.5
Msa1214710 AT1G77000.1 28.947 228 143 5 162 371 104 330 2.54e-14 75.5
Msa1214710 AT1G77000.1 28.877 187 121 6 446 623 99 282 4.34e-11 65.5
Msa1214710 AT3G07550.1 23.098 368 239 8 47 403 6 340 3.21e-13 72.4
Msa1214710 AT3G07550.2 23.098 368 239 8 47 403 6 340 3.21e-13 72.4
Msa1214710 AT3G07550.3 24.167 360 218 8 47 403 6 313 7.02e-13 70.9
Msa1214710 AT4G30640.1 29.808 208 127 5 46 251 10 200 2.29e-12 68.6
Msa1214710 AT1G77000.3 28.324 173 98 2 188 360 104 250 1.44e-11 65.9
Msa1214710 AT1G77000.4 28.324 173 98 2 188 360 104 250 1.44e-11 65.9
Msa1214710 AT5G67250.1 23.913 368 196 10 211 565 117 413 3.61e-11 66.6
Msa1214710 AT4G07400.1 37.008 127 76 3 163 287 330 454 7.77e-11 65.5

Find 169 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGCATGATTCAATGTTTA+AGG 0.094544 8_1:-75444735 None:intergenic
CGCTGGCCTTCTCCCTCTTT+TGG 0.142205 8_1:+75445480 Msa1214710:CDS
AGTTTCTCGTGGAGAATTTA+TGG 0.177171 8_1:+75445887 Msa1214710:CDS
CTGGCTGTTATTGGCCATTA+TGG 0.192129 8_1:+75444929 Msa1214710:CDS
CGCGATGGAACTGCTGAATA+AGG 0.264291 8_1:+75445932 Msa1214710:three_prime_UTR
ATGTTTAAGGTTGTCAAGTT+AGG 0.283107 8_1:-75444722 None:intergenic
TGTGTCTTGTTTGCTATATT+CGG 0.319855 8_1:+75444853 Msa1214710:CDS
TCGTTACTGCCTTTCCATAA+TGG 0.327153 8_1:-75444943 None:intergenic
GAATATTACTGATGCAAGTT+TGG 0.327338 8_1:+75445630 Msa1214710:CDS
TTTATGGAGATGTGATATTC+TGG 0.332414 8_1:+75445903 Msa1214710:CDS
CTGGAGAGATCTTGTGCATT+TGG 0.332649 8_1:-75445182 None:intergenic
CTCTCTATGTCTGACTGTTC+AGG 0.334066 8_1:+75445766 Msa1214710:CDS
AACTTGCATCAGTAATATTC+TGG 0.336340 8_1:-75445627 None:intergenic
TGTTATATTCTGTTTGTTGT+AGG 0.345967 8_1:+75446267 Msa1214710:three_prime_UTR
TGTCCTCTTGTTGGAGATCA+TGG 0.346783 8_1:+75444830 Msa1214710:CDS
ATTCAAAACTGTCCTGGTTT+CGG 0.358584 8_1:+75445376 Msa1214710:CDS
CTTGTCAAGGTGAACCTTGC+AGG 0.363717 8_1:+75445520 Msa1214710:CDS
AGGTGAACCTTGCAGGTTGC+TGG 0.365852 8_1:+75445527 Msa1214710:CDS
GCTGAATAAGGAAATGCTAA+TGG 0.368749 8_1:+75445944 Msa1214710:three_prime_UTR
GTGCCTTTCCTGGTGAAATT+AGG 0.368798 8_1:+75445805 Msa1214710:CDS
ACTCTAGATCGCACATTGCC+TGG 0.374175 8_1:+75446222 Msa1214710:three_prime_UTR
TGCGAAGGCACATCTGCTTC+AGG 0.374917 8_1:-75445120 None:intergenic
ATTTACACTTGTGAAGTGTA+TGG 0.378579 8_1:+75445288 Msa1214710:CDS
ATCAGTGCCTCATTTACCTT+TGG 0.379132 8_1:+75444140 Msa1214710:CDS
GGCTTGCTGCTATTGCTGTT+GGG 0.383869 8_1:+75444444 Msa1214710:CDS
GAAATTAGGCCAGGCGTTGT+CGG 0.389515 8_1:+75445819 Msa1214710:CDS
GCTGCTATTGCTGTTGGGAC+TGG 0.389778 8_1:+75444449 Msa1214710:CDS
CTGTGGAATGTGTCTTCTAT+TGG 0.391657 8_1:+75444587 Msa1214710:CDS
TATTGCAATCAAACCCTTGT+TGG 0.403057 8_1:-75444687 None:intergenic
TGTGTCTTCTATTGGTGATA+AGG 0.403727 8_1:+75444595 Msa1214710:CDS
ACTGGTTGCCGTGGTGGACT+TGG 0.405676 8_1:+75444467 Msa1214710:CDS
GTGTCTTCTATTGGTGATAA+GGG 0.408571 8_1:+75444596 Msa1214710:CDS
GAACAAGTGTGTGCCTTTCC+TGG 0.410656 8_1:+75445795 Msa1214710:CDS
ATTGAATCATGCTCGATGAT+TGG 0.411828 8_1:+75444743 Msa1214710:CDS
CAGATCAACATGCTGAAGTT+GGG 0.413419 8_1:-75445434 None:intergenic
TCCCTTCCAAACGCCTTGTA+AGG 0.414436 8_1:-75444403 None:intergenic
TCAGCAGTTCCATCGCGATT+AGG 0.414562 8_1:-75445926 None:intergenic
AGGCTTGCTGCTATTGCTGT+TGG 0.416928 8_1:+75444443 Msa1214710:CDS
CTTGGAAAGCTATCTATTAG+AGG 0.419353 8_1:+75444485 Msa1214710:CDS
TGGCTACCTTACAAGGCGTT+TGG 0.422778 8_1:+75444397 Msa1214710:CDS
TCATGGAACTATAGCCAAAA+GGG 0.423795 8_1:-75446165 None:intergenic
GAGCTTCTCTCTTTGCCACT+TGG 0.430900 8_1:-75444257 None:intergenic
CTCATGGAACTATAGCCAAA+AGG 0.433792 8_1:-75446166 None:intergenic
TCCATGTTGGCCAGGCTACA+TGG 0.434359 8_1:+75445571 Msa1214710:CDS
TGTTTAAGGTTGTCAAGTTA+GGG 0.434609 8_1:-75444721 None:intergenic
ATCAAGGATTGTCCTCTTGT+TGG 0.435290 8_1:+75444821 Msa1214710:CDS
GGTAATGATGAATTGCATCC+TGG 0.437251 8_1:+75444053 Msa1214710:intron
TGCGGCGCGGTTTGTTGACT+CGG 0.438068 8_1:+75446057 Msa1214710:three_prime_UTR
GTTGATCTGACTGGACTTTG+CGG 0.440114 8_1:+75445448 Msa1214710:CDS
GACTATCAAGTGTGGATTTG+CGG 0.442563 8_1:+75446039 Msa1214710:three_prime_UTR
TGTTGGTGATCGACGAAGAA+TGG 0.444320 8_1:-75444670 None:intergenic
AAATTAGGCCAGGCGTTGTC+GGG 0.445281 8_1:+75445820 Msa1214710:CDS
TGGAAAGGCAGTAACGAATC+TGG 0.449057 8_1:+75444949 Msa1214710:CDS
GCCTACCATTGAGATCCTTC+CGG 0.449888 8_1:+75444202 Msa1214710:CDS
AGTTACTGAGTCTTGGTTGA+TGG 0.456016 8_1:+75446194 Msa1214710:three_prime_UTR
GTTACATTCAATCTGTATCA+AGG 0.456342 8_1:+75444805 Msa1214710:CDS
AAGCTTTACCTTTGACAAGT+TGG 0.456600 8_1:-75444879 None:intergenic
TATTCAAGCCCGACAACGCC+TGG 0.460376 8_1:-75445828 None:intergenic
AGTGGCAAAGAGAGAAGCTC+AGG 0.464804 8_1:+75444260 Msa1214710:CDS
CTCTAGATCGCACATTGCCT+GGG 0.467454 8_1:+75446223 Msa1214710:three_prime_UTR
AGACATCTAGATCATTCAAC+AGG 0.469504 8_1:-75445675 None:intergenic
TCAGATCAACATGCTGAAGT+TGG 0.473467 8_1:-75445435 None:intergenic
GGTCTTTGTGAGATTGCAAA+AGG 0.475591 8_1:+75444617 Msa1214710:CDS
TTAACCATTCAAAACTGTCC+TGG 0.477543 8_1:+75445370 Msa1214710:CDS
GGCATAGAAAATCCCACATT+GGG 0.478588 8_1:-75445236 None:intergenic
ACTCTTCCAACTGCAAGCTC+TGG 0.480930 8_1:-75445201 None:intergenic
GATACAGATTGAATGTAACT+TGG 0.482768 8_1:-75444801 None:intergenic
TTCAGCGAGCTCTTGAGCAC+GGG 0.483184 8_1:+75444168 Msa1214710:CDS
CAGGTGCCTGTGTATCAAAA+AGG 0.484862 8_1:+75444279 Msa1214710:CDS
GCCTCACAATTCTCCAAAAG+AGG 0.487248 8_1:-75445493 None:intergenic
TTTCCTGGTGAAATTAGGCC+AGG 0.489686 8_1:+75445810 Msa1214710:CDS
GAGAGTTCCACCATGTAGCC+TGG 0.492311 8_1:-75445581 None:intergenic
CTTTGTATCCGACATTGGAC+TGG 0.492327 8_1:+75445150 Msa1214710:CDS
ACATAGTTTCCATGTTGGCC+AGG 0.504234 8_1:+75445563 Msa1214710:CDS
GGCACATCTGCTTCAGGTGT+GGG 0.504975 8_1:-75445114 None:intergenic
CTTCAGCGAGCTCTTGAGCA+CGG 0.505562 8_1:+75444167 Msa1214710:CDS
TGGTTTCGGCAGTGCTAGCA+TGG 0.505703 8_1:+75445390 Msa1214710:CDS
AGTGCTAGCATGGCTGTGGT+TGG 0.506787 8_1:+75445400 Msa1214710:CDS
ATGCTCGATGATTGGAAATG+AGG 0.506806 8_1:+75444751 Msa1214710:CDS
TGCTCGCATCGGTTACCCCT+TGG 0.507539 8_1:-75445069 None:intergenic
TGCTCGATGATTGGAAATGA+GGG 0.508764 8_1:+75444752 Msa1214710:CDS
CGCATCGGTTACCCCTTGGC+AGG 0.510702 8_1:-75445065 None:intergenic
AAGTGTGCAATCACTGATGC+AGG 0.512250 8_1:+75445700 Msa1214710:CDS
GGTCTCTCAGCAGTTGCTCA+TGG 0.513210 8_1:+75444539 Msa1214710:CDS
GGAGGAAAGCCACTGATGTA+AGG 0.514553 8_1:+75444423 Msa1214710:CDS
ATCTCTCCAGAGCTTGCAGT+TGG 0.514820 8_1:+75445195 Msa1214710:CDS
TGCGTCATGGGAGTTGCTCA+AGG 0.518086 8_1:+75445010 Msa1214710:CDS
ACCATGTAGCCTGGCCAACA+TGG 0.519235 8_1:-75445572 None:intergenic
AAGGTGATGGCTACCTTACA+AGG 0.519297 8_1:+75444390 Msa1214710:CDS
GGAAACAAACCAAAACTCCT+TGG 0.519774 8_1:-75446087 None:intergenic
GTGCTAGCATGGCTGTGGTT+GGG 0.523567 8_1:+75445401 Msa1214710:CDS
TACCTTACAAGGCGTTTGGA+AGG 0.525492 8_1:+75444401 Msa1214710:CDS
AGCATCGAAGCCATGGGTAA+AGG 0.526861 8_1:+75445088 Msa1214710:CDS
TTTACACTTGTGAAGTGTAT+GGG 0.528626 8_1:+75445289 Msa1214710:CDS
TGTAGCTTTGTATCCGACAT+TGG 0.531778 8_1:+75445145 Msa1214710:CDS
CTTCAGCATGTTGATCTGAC+TGG 0.536194 8_1:+75445439 Msa1214710:CDS
TGCAAAAGGATGTCATATGT+TGG 0.540414 8_1:+75444631 Msa1214710:CDS
CTGATTCTAGTTCGCTTCGT+AGG 0.543276 8_1:-75444122 None:intergenic
AGATTACATAGTTTCCATGT+TGG 0.543872 8_1:+75445558 Msa1214710:CDS
GTTGGGACTGGTTGCCGTGG+TGG 0.544249 8_1:+75444461 Msa1214710:CDS
GTAATGATGAATTGCATCCT+GGG 0.545999 8_1:+75444054 Msa1214710:CDS
ATCTCAAAGAGACATTCGTC+CGG 0.551142 8_1:-75444221 None:intergenic
ACTCAGTAACTGCATTCTCA+TGG 0.552061 8_1:-75446182 None:intergenic
TTCGGCTTCCAACTTGTCAA+AGG 0.552626 8_1:+75444871 Msa1214710:CDS
ATGCTAGCACTGCCGAAACC+AGG 0.554879 8_1:-75445388 None:intergenic
CGGCAGTGCTAGCATGGCTG+TGG 0.556009 8_1:+75445396 Msa1214710:CDS
ATTAATAATGAAGCAGCAGA+TGG 0.557908 8_1:+75445984 Msa1214710:three_prime_UTR
ATACAGATTGAATGTAACTT+GGG 0.559199 8_1:-75444800 None:intergenic
AGGCACATCTGCTTCAGGTG+TGG 0.560606 8_1:-75445115 None:intergenic
AGAATGCAGTTACTGAGTCT+TGG 0.560746 8_1:+75446187 Msa1214710:three_prime_UTR
GTGAAAGTGATCTGAGAGAA+GGG 0.561763 8_1:-75444565 None:intergenic
TGGCCTAATTTCACCAGGAA+AGG 0.564441 8_1:-75445808 None:intergenic
ATGATCAGCACGAGAGAGAA+CGG 0.564713 8_1:-75445728 None:intergenic
ACCTTACAAGGCGTTTGGAA+GGG 0.565254 8_1:+75444402 Msa1214710:CDS
AGCTCGCTGAAGAGCTCCAA+AGG 0.565614 8_1:-75444156 None:intergenic
TAACTATTACTTCCTGCCAA+GGG 0.575789 8_1:+75445053 Msa1214710:CDS
AAGAGCTCCAAAGGTAAATG+AGG 0.576760 8_1:-75444147 None:intergenic
GGTTTGATTGCAATAGCTGA+AGG 0.577016 8_1:+75444695 Msa1214710:CDS
CTCGAAATACTAAACCTCGA+TGG 0.579655 8_1:+75445601 Msa1214710:CDS
CAAAGAGACATTCGTCCGGA+AGG 0.580269 8_1:-75444217 None:intergenic
GTGTGGGAAACCTTTACCCA+TGG 0.581206 8_1:-75445098 None:intergenic
AGCAGCAAGCCTTACATCAG+TGG 0.584954 8_1:-75444432 None:intergenic
GGGCATAGAAAATCCCACAT+TGG 0.585502 8_1:-75445237 None:intergenic
CAATGCAATTGAGTTTCTCG+TGG 0.586036 8_1:+75445876 Msa1214710:CDS
TTCTTCGTCGATCACCAACA+AGG 0.587327 8_1:+75444673 Msa1214710:CDS
AGAGCAGTGCACATCAACAT+TGG 0.587717 8_1:-75444099 None:intergenic
GTCTCTTTGAGATATTCAGA+CGG 0.588078 8_1:+75444231 Msa1214710:CDS
GGGAATTAAAGACATTGATG+TGG 0.591377 8_1:+75445309 Msa1214710:CDS
TTACAAGGCGTTTGGAAGGG+AGG 0.593323 8_1:+75444405 Msa1214710:CDS
CCTCACAATTCTCCAAAAGA+GGG 0.598079 8_1:-75445492 None:intergenic
ATATTCTGGCCTAATCGCGA+TGG 0.598949 8_1:+75445917 Msa1214710:exon
TGTTATTGGCCATTATGGAA+AGG 0.600886 8_1:+75444934 Msa1214710:CDS
CTCTCAGATCACTTTCACTG+TGG 0.601821 8_1:+75444570 Msa1214710:CDS
AGTGAAAGTGATCTGAGAGA+AGG 0.602549 8_1:-75444566 None:intergenic
CATGGCTTCGATGCTCGCAT+CGG 0.603091 8_1:-75445080 None:intergenic
GATGAAGATGCTGAAGGTGA+TGG 0.605262 8_1:+75444377 Msa1214710:CDS
AGGCAATGTGCGATCTAGAG+TGG 0.606144 8_1:-75446220 None:intergenic
TGTAACAGATTCACCCAATG+TGG 0.606794 8_1:+75445223 Msa1214710:CDS
AGATCAACATGCTGAAGTTG+GGG 0.609536 8_1:-75445433 None:intergenic
CTAACTATTACTTCCTGCCA+AGG 0.610927 8_1:+75445052 Msa1214710:CDS
ACACCATGATCTCCAACAAG+AGG 0.615650 8_1:-75444833 None:intergenic
TCTTCGTCGATCACCAACAA+GGG 0.621934 8_1:+75444674 Msa1214710:CDS
AAATGCTGCCAGTCCAATGT+CGG 0.622406 8_1:-75445158 None:intergenic
AATTCTCCAAAAGAGGGAGA+AGG 0.622832 8_1:-75445486 None:intergenic
GATGCGAGCATCGAAGCCAT+GGG 0.623164 8_1:+75445082 Msa1214710:CDS
TTCGTCCGGAAGGATCTCAA+TGG 0.627959 8_1:-75444207 None:intergenic
ATACAAAGCTACATCTGCGA+AGG 0.636036 8_1:-75445135 None:intergenic
TCAAGTGTGGATTTGCGGCG+CGG 0.636183 8_1:+75446044 Msa1214710:three_prime_UTR
GTAACGAATCTGGTTCTAAG+TGG 0.640999 8_1:+75444959 Msa1214710:CDS
TAATGATGAATTGCATCCTG+GGG 0.643262 8_1:+75444055 Msa1214710:CDS
GCTGTTGGGACTGGTTGCCG+TGG 0.645340 8_1:+75444458 Msa1214710:CDS
TCAAGTTCCAGCAACCTGCA+AGG 0.650087 8_1:-75445534 None:intergenic
TTGTGAGGCTGGACTTGTCA+AGG 0.655559 8_1:+75445507 Msa1214710:CDS
GCTGATATGACTATCAAGTG+TGG 0.658205 8_1:+75446031 Msa1214710:three_prime_UTR
AACTATTACTTCCTGCCAAG+GGG 0.659376 8_1:+75445054 Msa1214710:CDS
GAGCAACTGCTGAGAGACCG+CGG 0.662248 8_1:-75444535 None:intergenic
TAATATTCTGGCATCCATCG+AGG 0.665697 8_1:-75445615 None:intergenic
CATGGAACTATAGCCAAAAG+GGG 0.666185 8_1:-75446164 None:intergenic
GTAACAGATTCACCCAATGT+GGG 0.667862 8_1:+75445224 Msa1214710:CDS
GAGAGTGATGAAGATGCTGA+AGG 0.668726 8_1:+75444371 Msa1214710:CDS
TCCGGAAGGATCTCAATGGT+AGG 0.673037 8_1:-75444203 None:intergenic
AGAGGAAACAACTCGACTCG+AGG 0.676030 8_1:+75444503 Msa1214710:CDS
AAAGATCGAAGAGACTTGCA+AGG 0.680643 8_1:-75445349 None:intergenic
AGTGATACAAAGTAAAACCC+AGG 0.687051 8_1:-75446240 None:intergenic
ATATTCAGACGGCTTCCAAG+TGG 0.698602 8_1:+75444242 Msa1214710:CDS
ATGTTGGCCAGGCTACATGG+TGG 0.717767 8_1:+75445574 Msa1214710:CDS
ACTCGAGGTGTTACAGACCG+CGG 0.719268 8_1:+75444518 Msa1214710:CDS
AATGATGAATTGCATCCTGG+GGG 0.735856 8_1:+75444056 Msa1214710:CDS
ATAGCTTTCCAAGTCCACCA+CGG 0.754154 8_1:-75444475 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTATATCATTATATTATA+TGG + chr8_1:75443691-75443710 Msa1214710:intron 10.0%
!!! GAAGTTAATTTTTTTTTTTT+TGG + chr8_1:75443816-75443835 Msa1214710:intron 10.0%
!!! CATTAAAAAAATCGATTTTA+AGG + chr8_1:75443129-75443148 Msa1214710:intron 15.0%
!!! TTTTTAAGTTTTCTAGTTTA+TGG + chr8_1:75443611-75443630 Msa1214710:intron 15.0%
!! AAGAATAACAAAGAAAATAT+TGG + chr8_1:75443759-75443778 Msa1214710:intron 15.0%
!! TGGAAATAGAAAAAAATCTT+AGG - chr8_1:75443216-75443235 None:intergenic 20.0%
!! ACTAGAAAACTTAAAAATTG+AGG - chr8_1:75443608-75443627 None:intergenic 20.0%
!!! TTTCTTTGTTATTCTTACTA+AGG - chr8_1:75443755-75443774 None:intergenic 20.0%
!! TTGTAATGATAAGTTGTAAT+TGG + chr8_1:75443977-75443996 Msa1214710:intron 20.0%
!! TTAAAAATGCTTGCAAAAAA+GGG - chr8_1:75446120-75446139 None:intergenic 20.0%
!! ATTAAAAATGCTTGCAAAAA+AGG - chr8_1:75446121-75446140 None:intergenic 20.0%
!!! TTATGGTTTTAATTGATCCT+AGG + chr8_1:75443628-75443647 Msa1214710:intron 25.0%
! TTATGTTATGCTATAATCCT+AGG - chr8_1:75443648-75443667 None:intergenic 25.0%
! TATGGATGTTATATATCTTG+TGG + chr8_1:75443709-75443728 Msa1214710:intron 25.0%
!!! AGAACCCTTTTTATTTTCTT+TGG + chr8_1:75443848-75443867 Msa1214710:intron 25.0%
! TCCACCAAAGAAAATAAAAA+GGG - chr8_1:75443855-75443874 None:intergenic 25.0%
! TTCCACCAAAGAAAATAAAA+AGG - chr8_1:75443856-75443875 None:intergenic 25.0%
!!! TTTTATTTTCTTTGGTGGAA+TGG + chr8_1:75443856-75443875 Msa1214710:intron 25.0%
!!! AGATAGTGAATTTTGTTTCT+AGG + chr8_1:75443946-75443965 Msa1214710:intron 25.0%
!!! GATAGTGAATTTTGTTTCTA+GGG + chr8_1:75443947-75443966 Msa1214710:intron 25.0%
! ATACAGATTGAATGTAACTT+GGG - chr8_1:75444803-75444822 None:intergenic 25.0%
! TTAAAAATGTAAGCGAAAGA+GGG + chr8_1:75444984-75445003 Msa1214710:CDS 25.0%
!!! TGTTATATTCTGTTTGTTGT+AGG + chr8_1:75446267-75446286 Msa1214710:three_prime_UTR 25.0%
GTAACATTGTACTTATTCTG+TGG + chr8_1:75443183-75443202 Msa1214710:intron 30.0%
! ACAAAGCGGTTTTTATATGT+TGG - chr8_1:75443236-75443255 None:intergenic 30.0%
TTGTCATGTAACAAACAAAG+CGG - chr8_1:75443250-75443269 None:intergenic 30.0%
GGAGCAAAAAAATGCAAAAA+AGG - chr8_1:75443337-75443356 None:intergenic 30.0%
!!! TTGCATTTTTTTGCTCCTTA+AGG + chr8_1:75443340-75443359 Msa1214710:intron 30.0%
GAGGTATATAACAGAGAAAA+GGG - chr8_1:75443392-75443411 None:intergenic 30.0%
! AGAGGTATATAACAGAGAAA+AGG - chr8_1:75443393-75443412 None:intergenic 30.0%
GAATAATGAACAAGAAAGAG+AGG - chr8_1:75443411-75443430 None:intergenic 30.0%
TGTGATATTCAGCTTATACT+TGG + chr8_1:75443445-75443464 Msa1214710:intron 30.0%
!!! ACCCTTTTTATTTTCTTTGG+TGG + chr8_1:75443851-75443870 Msa1214710:intron 30.0%
!! ATTGTGTGAATGACTTTTTC+AGG + chr8_1:75444032-75444051 Msa1214710:intron 30.0%
! TGTTTAAGGTTGTCAAGTTA+GGG - chr8_1:75444724-75444743 None:intergenic 30.0%
! ATGTTTAAGGTTGTCAAGTT+AGG - chr8_1:75444725-75444744 None:intergenic 30.0%
GATACAGATTGAATGTAACT+TGG - chr8_1:75444804-75444823 None:intergenic 30.0%
GTTACATTCAATCTGTATCA+AGG + chr8_1:75444805-75444824 Msa1214710:CDS 30.0%
!! TGTGTCTTGTTTGCTATATT+CGG + chr8_1:75444853-75444872 Msa1214710:CDS 30.0%
!!! GAATATCACTGATTTTTCTC+TGG + chr8_1:75444910-75444929 Msa1214710:CDS 30.0%
CTTAAAAATGTAAGCGAAAG+AGG + chr8_1:75444983-75445002 Msa1214710:CDS 30.0%
!! CTTCGTTTTGATGTTTGAAA+GGG - chr8_1:75445260-75445279 None:intergenic 30.0%
!! ACTTCGTTTTGATGTTTGAA+AGG - chr8_1:75445261-75445280 None:intergenic 30.0%
ATTTACACTTGTGAAGTGTA+TGG + chr8_1:75445288-75445307 Msa1214710:CDS 30.0%
TTTACACTTGTGAAGTGTAT+GGG + chr8_1:75445289-75445308 Msa1214710:CDS 30.0%
AGATTACATAGTTTCCATGT+TGG + chr8_1:75445558-75445577 Msa1214710:CDS 30.0%
AACTTGCATCAGTAATATTC+TGG - chr8_1:75445630-75445649 None:intergenic 30.0%
GAATATTACTGATGCAAGTT+TGG + chr8_1:75445630-75445649 Msa1214710:CDS 30.0%
TTTATGGAGATGTGATATTC+TGG + chr8_1:75445903-75445922 Msa1214710:CDS 30.0%
ATTAATAATGAAGCAGCAGA+TGG + chr8_1:75445984-75446003 Msa1214710:three_prime_UTR 30.0%
!! ACATTCAGCATACTTGTTTT+TGG + chr8_1:75446009-75446028 Msa1214710:three_prime_UTR 30.0%
!!! TTGTTTTTTACAACCCCTTT+TGG + chr8_1:75446151-75446170 Msa1214710:three_prime_UTR 30.0%
!!! TGCTCCTTAAGGAGTTTTTT+TGG + chr8_1:75443351-75443370 Msa1214710:intron 35.0%
GATGCCAAAAAAACTCCTTA+AGG - chr8_1:75443358-75443377 None:intergenic 35.0%
GTAATGATGAATTGCATCCT+GGG + chr8_1:75444054-75444073 Msa1214710:CDS 35.0%
TAATGATGAATTGCATCCTG+GGG + chr8_1:75444055-75444074 Msa1214710:CDS 35.0%
!! GTCTCTTTGAGATATTCAGA+CGG + chr8_1:75444231-75444250 Msa1214710:CDS 35.0%
CTTGGAAAGCTATCTATTAG+AGG + chr8_1:75444485-75444504 Msa1214710:CDS 35.0%
! TGTGTCTTCTATTGGTGATA+AGG + chr8_1:75444595-75444614 Msa1214710:CDS 35.0%
! GTGTCTTCTATTGGTGATAA+GGG + chr8_1:75444596-75444615 Msa1214710:CDS 35.0%
TGCAAAAGGATGTCATATGT+TGG + chr8_1:75444631-75444650 Msa1214710:CDS 35.0%
TATTGCAATCAAACCCTTGT+TGG - chr8_1:75444690-75444709 None:intergenic 35.0%
CGAGCATGATTCAATGTTTA+AGG - chr8_1:75444738-75444757 None:intergenic 35.0%
ATTGAATCATGCTCGATGAT+TGG + chr8_1:75444743-75444762 Msa1214710:CDS 35.0%
AAGCTTTACCTTTGACAAGT+TGG - chr8_1:75444882-75444901 None:intergenic 35.0%
! GATTTTTCTCTGGCTGTTAT+TGG + chr8_1:75444920-75444939 Msa1214710:CDS 35.0%
TGTTATTGGCCATTATGGAA+AGG + chr8_1:75444934-75444953 Msa1214710:CDS 35.0%
TAACTATTACTTCCTGCCAA+GGG + chr8_1:75445053-75445072 Msa1214710:CDS 35.0%
GGGAATTAAAGACATTGATG+TGG + chr8_1:75445309-75445328 Msa1214710:CDS 35.0%
TTAACCATTCAAAACTGTCC+TGG + chr8_1:75445370-75445389 Msa1214710:CDS 35.0%
ATTCAAAACTGTCCTGGTTT+CGG + chr8_1:75445376-75445395 Msa1214710:CDS 35.0%
AGACATCTAGATCATTCAAC+AGG - chr8_1:75445678-75445697 None:intergenic 35.0%
AGTTTCTCGTGGAGAATTTA+TGG + chr8_1:75445887-75445906 Msa1214710:CDS 35.0%
GCTGAATAAGGAAATGCTAA+TGG + chr8_1:75445944-75445963 Msa1214710:three_prime_UTR 35.0%
TCATGGAACTATAGCCAAAA+GGG - chr8_1:75446168-75446187 None:intergenic 35.0%
AGTGATACAAAGTAAAACCC+AGG - chr8_1:75446243-75446262 None:intergenic 35.0%
! TGGGTTTTACTTTGTATCAC+TGG + chr8_1:75446242-75446261 Msa1214710:three_prime_UTR 35.0%
AGTTACCACTCTGATTGACA+CGG - chr8_1:75443506-75443525 None:intergenic 40.0%
TGTGGCATGTTGTTGCAATA+AGG + chr8_1:75443727-75443746 Msa1214710:intron 40.0%
GTGGCATGTTGTTGCAATAA+GGG + chr8_1:75443728-75443747 Msa1214710:intron 40.0%
GGTAATGATGAATTGCATCC+TGG + chr8_1:75444053-75444072 Msa1214710:intron 40.0%
AATGATGAATTGCATCCTGG+GGG + chr8_1:75444056-75444075 Msa1214710:CDS 40.0%
ATCAGTGCCTCATTTACCTT+TGG + chr8_1:75444140-75444159 Msa1214710:CDS 40.0%
AAGAGCTCCAAAGGTAAATG+AGG - chr8_1:75444150-75444169 None:intergenic 40.0%
ATCTCAAAGAGACATTCGTC+CGG - chr8_1:75444224-75444243 None:intergenic 40.0%
! AAGCCACCTTTTTGATACAC+AGG - chr8_1:75444288-75444307 None:intergenic 40.0%
GTGAAAGTGATCTGAGAGAA+GGG - chr8_1:75444568-75444587 None:intergenic 40.0%
AGTGAAAGTGATCTGAGAGA+AGG - chr8_1:75444569-75444588 None:intergenic 40.0%
CTGTGGAATGTGTCTTCTAT+TGG + chr8_1:75444587-75444606 Msa1214710:CDS 40.0%
GGTCTTTGTGAGATTGCAAA+AGG + chr8_1:75444617-75444636 Msa1214710:CDS 40.0%
GGTTTGATTGCAATAGCTGA+AGG + chr8_1:75444695-75444714 Msa1214710:CDS 40.0%
ATGCTCGATGATTGGAAATG+AGG + chr8_1:75444751-75444770 Msa1214710:CDS 40.0%
TGCTCGATGATTGGAAATGA+GGG + chr8_1:75444752-75444771 Msa1214710:CDS 40.0%
ATCAAGGATTGTCCTCTTGT+TGG + chr8_1:75444821-75444840 Msa1214710:CDS 40.0%
TCGTTACTGCCTTTCCATAA+TGG - chr8_1:75444946-75444965 None:intergenic 40.0%
!! GTAACGAATCTGGTTCTAAG+TGG + chr8_1:75444959-75444978 Msa1214710:CDS 40.0%
CTAACTATTACTTCCTGCCA+AGG + chr8_1:75445052-75445071 Msa1214710:CDS 40.0%
AACTATTACTTCCTGCCAAG+GGG + chr8_1:75445054-75445073 Msa1214710:CDS 40.0%
ATACAAAGCTACATCTGCGA+AGG - chr8_1:75445138-75445157 None:intergenic 40.0%
!! TGTAGCTTTGTATCCGACAT+TGG + chr8_1:75445145-75445164 Msa1214710:CDS 40.0%
TGTAACAGATTCACCCAATG+TGG + chr8_1:75445223-75445242 Msa1214710:CDS 40.0%
GTAACAGATTCACCCAATGT+GGG + chr8_1:75445224-75445243 Msa1214710:CDS 40.0%
GGCATAGAAAATCCCACATT+GGG - chr8_1:75445239-75445258 None:intergenic 40.0%
AAAGATCGAAGAGACTTGCA+AGG - chr8_1:75445352-75445371 None:intergenic 40.0%
!!! GAAACCAGGACAGTTTTGAA+TGG - chr8_1:75445377-75445396 None:intergenic 40.0%
AGATCAACATGCTGAAGTTG+GGG - chr8_1:75445436-75445455 None:intergenic 40.0%
CAGATCAACATGCTGAAGTT+GGG - chr8_1:75445437-75445456 None:intergenic 40.0%
TCAGATCAACATGCTGAAGT+TGG - chr8_1:75445438-75445457 None:intergenic 40.0%
AATTCTCCAAAAGAGGGAGA+AGG - chr8_1:75445489-75445508 None:intergenic 40.0%
CCTCACAATTCTCCAAAAGA+GGG - chr8_1:75445495-75445514 None:intergenic 40.0%
CTCGAAATACTAAACCTCGA+TGG + chr8_1:75445601-75445620 Msa1214710:CDS 40.0%
TAATATTCTGGCATCCATCG+AGG - chr8_1:75445618-75445637 None:intergenic 40.0%
CAATGCAATTGAGTTTCTCG+TGG + chr8_1:75445876-75445895 Msa1214710:CDS 40.0%
GCTGATATGACTATCAAGTG+TGG + chr8_1:75446031-75446050 Msa1214710:three_prime_UTR 40.0%
GACTATCAAGTGTGGATTTG+CGG + chr8_1:75446039-75446058 Msa1214710:three_prime_UTR 40.0%
!! GGTTGTTTTCCAAGGAGTTT+TGG + chr8_1:75446078-75446097 Msa1214710:three_prime_UTR 40.0%
GGAAACAAACCAAAACTCCT+TGG - chr8_1:75446090-75446109 None:intergenic 40.0%
! CTTGCAAAAAAGGGCTAGTA+AGG - chr8_1:75446111-75446130 None:intergenic 40.0%
CATGGAACTATAGCCAAAAG+GGG - chr8_1:75446167-75446186 None:intergenic 40.0%
CTCATGGAACTATAGCCAAA+AGG - chr8_1:75446169-75446188 None:intergenic 40.0%
ACTCAGTAACTGCATTCTCA+TGG - chr8_1:75446185-75446204 None:intergenic 40.0%
AGAATGCAGTTACTGAGTCT+TGG + chr8_1:75446187-75446206 Msa1214710:three_prime_UTR 40.0%
AGTTACTGAGTCTTGGTTGA+TGG + chr8_1:75446194-75446213 Msa1214710:three_prime_UTR 40.0%
! CTGTTTCTTGTGTTCATGCC+TGG + chr8_1:75443480-75443499 Msa1214710:intron 45.0%
AGAGCAGTGCACATCAACAT+TGG - chr8_1:75444102-75444121 None:intergenic 45.0%
!! CTGATTCTAGTTCGCTTCGT+AGG - chr8_1:75444125-75444144 None:intergenic 45.0%
ATATTCAGACGGCTTCCAAG+TGG + chr8_1:75444242-75444261 Msa1214710:CDS 45.0%
CAGGTGCCTGTGTATCAAAA+AGG + chr8_1:75444279-75444298 Msa1214710:CDS 45.0%
GTGCCTGTGTATCAAAAAGG+TGG + chr8_1:75444282-75444301 Msa1214710:CDS 45.0%
GAGAGTGATGAAGATGCTGA+AGG + chr8_1:75444371-75444390 Msa1214710:CDS 45.0%
GATGAAGATGCTGAAGGTGA+TGG + chr8_1:75444377-75444396 Msa1214710:CDS 45.0%
! AAGGTGATGGCTACCTTACA+AGG + chr8_1:75444390-75444409 Msa1214710:CDS 45.0%
! TACCTTACAAGGCGTTTGGA+AGG + chr8_1:75444401-75444420 Msa1214710:CDS 45.0%
! ACCTTACAAGGCGTTTGGAA+GGG + chr8_1:75444402-75444421 Msa1214710:CDS 45.0%
ATAGCTTTCCAAGTCCACCA+CGG - chr8_1:75444478-75444497 None:intergenic 45.0%
CTCTCAGATCACTTTCACTG+TGG + chr8_1:75444570-75444589 Msa1214710:CDS 45.0%
!! TGTTGGTGATCGACGAAGAA+TGG - chr8_1:75444673-75444692 None:intergenic 45.0%
TTCTTCGTCGATCACCAACA+AGG + chr8_1:75444673-75444692 Msa1214710:CDS 45.0%
TCTTCGTCGATCACCAACAA+GGG + chr8_1:75444674-75444693 Msa1214710:CDS 45.0%
TGTCCTCTTGTTGGAGATCA+TGG + chr8_1:75444830-75444849 Msa1214710:CDS 45.0%
ACACCATGATCTCCAACAAG+AGG - chr8_1:75444836-75444855 None:intergenic 45.0%
TTCGGCTTCCAACTTGTCAA+AGG + chr8_1:75444871-75444890 Msa1214710:CDS 45.0%
CTGGCTGTTATTGGCCATTA+TGG + chr8_1:75444929-75444948 Msa1214710:CDS 45.0%
TGGAAAGGCAGTAACGAATC+TGG + chr8_1:75444949-75444968 Msa1214710:CDS 45.0%
! GAAAGAGGGTTTTGCGTCAT+GGG + chr8_1:75444998-75445017 Msa1214710:CDS 45.0%
CTTTGTATCCGACATTGGAC+TGG + chr8_1:75445150-75445169 Msa1214710:CDS 45.0%
AAATGCTGCCAGTCCAATGT+CGG - chr8_1:75445161-75445180 None:intergenic 45.0%
CTGGAGAGATCTTGTGCATT+TGG - chr8_1:75445185-75445204 None:intergenic 45.0%
GGGCATAGAAAATCCCACAT+TGG - chr8_1:75445240-75445259 None:intergenic 45.0%
CTTCAGCATGTTGATCTGAC+TGG + chr8_1:75445439-75445458 Msa1214710:CDS 45.0%
GTTGATCTGACTGGACTTTG+CGG + chr8_1:75445448-75445467 Msa1214710:CDS 45.0%
!! CCCTCTTTTGGAGAATTGTG+AGG + chr8_1:75445492-75445511 Msa1214710:CDS 45.0%
GCCTCACAATTCTCCAAAAG+AGG - chr8_1:75445496-75445515 None:intergenic 45.0%
!! CTTTTGGAGAATTGTGAGGC+TGG + chr8_1:75445496-75445515 Msa1214710:CDS 45.0%
ACATAGTTTCCATGTTGGCC+AGG + chr8_1:75445563-75445582 Msa1214710:CDS 45.0%
AAGTGTGCAATCACTGATGC+AGG + chr8_1:75445700-75445719 Msa1214710:CDS 45.0%
ATGATCAGCACGAGAGAGAA+CGG - chr8_1:75445731-75445750 None:intergenic 45.0%
CTCTCTATGTCTGACTGTTC+AGG + chr8_1:75445766-75445785 Msa1214710:CDS 45.0%
GTGCCTTTCCTGGTGAAATT+AGG + chr8_1:75445805-75445824 Msa1214710:CDS 45.0%
TGGCCTAATTTCACCAGGAA+AGG - chr8_1:75445811-75445830 None:intergenic 45.0%
TTTCCTGGTGAAATTAGGCC+AGG + chr8_1:75445810-75445829 Msa1214710:CDS 45.0%
ATATTCTGGCCTAATCGCGA+TGG + chr8_1:75445917-75445936 Msa1214710:exon 45.0%
!!! GTTGACTCGGTTGTTTTCCA+AGG + chr8_1:75446070-75446089 Msa1214710:three_prime_UTR 45.0%
ATGAATTGCATCCTGGGGGT+AGG + chr8_1:75444060-75444079 Msa1214710:CDS 50.0%
TGAATTGCATCCTGGGGGTA+GGG + chr8_1:75444061-75444080 Msa1214710:CDS 50.0%
GCCTACCATTGAGATCCTTC+CGG + chr8_1:75444202-75444221 Msa1214710:CDS 50.0%
TCCGGAAGGATCTCAATGGT+AGG - chr8_1:75444206-75444225 None:intergenic 50.0%
TTCGTCCGGAAGGATCTCAA+TGG - chr8_1:75444210-75444229 None:intergenic 50.0%
CAAAGAGACATTCGTCCGGA+AGG - chr8_1:75444220-75444239 None:intergenic 50.0%
GAGCTTCTCTCTTTGCCACT+TGG - chr8_1:75444260-75444279 None:intergenic 50.0%
AGTGGCAAAGAGAGAAGCTC+AGG + chr8_1:75444260-75444279 Msa1214710:CDS 50.0%
! TGGCTACCTTACAAGGCGTT+TGG + chr8_1:75444397-75444416 Msa1214710:CDS 50.0%
TCCCTTCCAAACGCCTTGTA+AGG - chr8_1:75444406-75444425 None:intergenic 50.0%
! TTACAAGGCGTTTGGAAGGG+AGG + chr8_1:75444405-75444424 Msa1214710:CDS 50.0%
GGAGGAAAGCCACTGATGTA+AGG + chr8_1:75444423-75444442 Msa1214710:CDS 50.0%
AGCAGCAAGCCTTACATCAG+TGG - chr8_1:75444435-75444454 None:intergenic 50.0%
!! AGGCTTGCTGCTATTGCTGT+TGG + chr8_1:75444443-75444462 Msa1214710:CDS 50.0%
!! GGCTTGCTGCTATTGCTGTT+GGG + chr8_1:75444444-75444463 Msa1214710:CDS 50.0%
! AGAGGAAACAACTCGACTCG+AGG + chr8_1:75444503-75444522 Msa1214710:CDS 50.0%
! CGAAAGAGGGTTTTGCGTCA+TGG + chr8_1:75444997-75445016 Msa1214710:CDS 50.0%
! AGCATCGAAGCCATGGGTAA+AGG + chr8_1:75445088-75445107 Msa1214710:CDS 50.0%
GTGTGGGAAACCTTTACCCA+TGG - chr8_1:75445101-75445120 None:intergenic 50.0%
ATCTCTCCAGAGCTTGCAGT+TGG + chr8_1:75445195-75445214 Msa1214710:CDS 50.0%
ACTCTTCCAACTGCAAGCTC+TGG - chr8_1:75445204-75445223 None:intergenic 50.0%
TTGTGAGGCTGGACTTGTCA+AGG + chr8_1:75445507-75445526 Msa1214710:CDS 50.0%
CTTGTCAAGGTGAACCTTGC+AGG + chr8_1:75445520-75445539 Msa1214710:CDS 50.0%
TCAAGTTCCAGCAACCTGCA+AGG - chr8_1:75445537-75445556 None:intergenic 50.0%
GAACAAGTGTGTGCCTTTCC+TGG + chr8_1:75445795-75445814 Msa1214710:CDS 50.0%
! GAAATTAGGCCAGGCGTTGT+CGG + chr8_1:75445819-75445838 Msa1214710:CDS 50.0%
! AAATTAGGCCAGGCGTTGTC+GGG + chr8_1:75445820-75445839 Msa1214710:CDS 50.0%
TCAGCAGTTCCATCGCGATT+AGG - chr8_1:75445929-75445948 None:intergenic 50.0%
CGCGATGGAACTGCTGAATA+AGG + chr8_1:75445932-75445951 Msa1214710:three_prime_UTR 50.0%
AGGCAATGTGCGATCTAGAG+TGG - chr8_1:75446223-75446242 None:intergenic 50.0%
ACTCTAGATCGCACATTGCC+TGG + chr8_1:75446222-75446241 Msa1214710:three_prime_UTR 50.0%
CTCTAGATCGCACATTGCCT+GGG + chr8_1:75446223-75446242 Msa1214710:three_prime_UTR 50.0%
ATAGTGTACACCCTACCCCC+AGG - chr8_1:75444074-75444093 None:intergenic 55.0%
AGCTCGCTGAAGAGCTCCAA+AGG - chr8_1:75444159-75444178 None:intergenic 55.0%
CTTCAGCGAGCTCTTGAGCA+CGG + chr8_1:75444167-75444186 Msa1214710:CDS 55.0%
TTCAGCGAGCTCTTGAGCAC+GGG + chr8_1:75444168-75444187 Msa1214710:CDS 55.0%
! GCTGCTATTGCTGTTGGGAC+TGG + chr8_1:75444449-75444468 Msa1214710:CDS 55.0%
! ACTCGAGGTGTTACAGACCG+CGG + chr8_1:75444518-75444537 Msa1214710:CDS 55.0%
GGTCTCTCAGCAGTTGCTCA+TGG + chr8_1:75444539-75444558 Msa1214710:CDS 55.0%
TGCGTCATGGGAGTTGCTCA+AGG + chr8_1:75445010-75445029 Msa1214710:CDS 55.0%
CATGGCTTCGATGCTCGCAT+CGG - chr8_1:75445083-75445102 None:intergenic 55.0%
!! GATGCGAGCATCGAAGCCAT+GGG + chr8_1:75445082-75445101 Msa1214710:CDS 55.0%
GGCACATCTGCTTCAGGTGT+GGG - chr8_1:75445117-75445136 None:intergenic 55.0%
AGGCACATCTGCTTCAGGTG+TGG - chr8_1:75445118-75445137 None:intergenic 55.0%
! TGCGAAGGCACATCTGCTTC+AGG - chr8_1:75445123-75445142 None:intergenic 55.0%
ATGCTAGCACTGCCGAAACC+AGG - chr8_1:75445391-75445410 None:intergenic 55.0%
TGGTTTCGGCAGTGCTAGCA+TGG + chr8_1:75445390-75445409 Msa1214710:CDS 55.0%
AGTGCTAGCATGGCTGTGGT+TGG + chr8_1:75445400-75445419 Msa1214710:CDS 55.0%
GTGCTAGCATGGCTGTGGTT+GGG + chr8_1:75445401-75445420 Msa1214710:CDS 55.0%
CTTTGCGGCATAACTGACGC+TGG + chr8_1:75445463-75445482 Msa1214710:CDS 55.0%
AGGTGAACCTTGCAGGTTGC+TGG + chr8_1:75445527-75445546 Msa1214710:CDS 55.0%
TCCATGTTGGCCAGGCTACA+TGG + chr8_1:75445571-75445590 Msa1214710:CDS 55.0%
ACCATGTAGCCTGGCCAACA+TGG - chr8_1:75445575-75445594 None:intergenic 55.0%
ATGTTGGCCAGGCTACATGG+TGG + chr8_1:75445574-75445593 Msa1214710:CDS 55.0%
GAGAGTTCCACCATGTAGCC+TGG - chr8_1:75445584-75445603 None:intergenic 55.0%
ACGCCTGGCCTAATTTCACC+AGG - chr8_1:75445816-75445835 None:intergenic 55.0%
TATTCAAGCCCGACAACGCC+TGG - chr8_1:75445831-75445850 None:intergenic 55.0%
TCAAGTGTGGATTTGCGGCG+CGG + chr8_1:75446044-75446063 Msa1214710:three_prime_UTR 55.0%
CCACTCTGATTGACACGGCC+AGG - chr8_1:75443501-75443520 None:intergenic 60.0%
CCTGGCCGTGTCAATCAGAG+TGG + chr8_1:75443498-75443517 Msa1214710:intron 60.0%
!! ACTGGTTGCCGTGGTGGACT+TGG + chr8_1:75444467-75444486 Msa1214710:CDS 60.0%
GAGCAACTGCTGAGAGACCG+CGG - chr8_1:75444538-75444557 None:intergenic 60.0%
!! TGCTCGCATCGGTTACCCCT+TGG - chr8_1:75445072-75445091 None:intergenic 60.0%
!! CGATGCGAGCATCGAAGCCA+TGG + chr8_1:75445081-75445100 Msa1214710:CDS 60.0%
!!! CGCTGGCCTTCTCCCTCTTT+TGG + chr8_1:75445480-75445499 Msa1214710:CDS 60.0%
!! TGCGGCGCGGTTTGTTGACT+CGG + chr8_1:75446057-75446076 Msa1214710:three_prime_UTR 60.0%
!! GCTGTTGGGACTGGTTGCCG+TGG + chr8_1:75444458-75444477 Msa1214710:CDS 65.0%
!! GTTGGGACTGGTTGCCGTGG+TGG + chr8_1:75444461-75444480 Msa1214710:CDS 65.0%
!! CGCATCGGTTACCCCTTGGC+AGG - chr8_1:75445068-75445087 None:intergenic 65.0%
CGGCAGTGCTAGCATGGCTG+TGG + chr8_1:75445396-75445415 Msa1214710:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 75443121 75446369 75443121 ID=Msa1214710;Name=Msa1214710
chr8_1 mRNA 75443121 75446369 75443121 ID=Msa1214710-mRNA-1;Parent=Msa1214710;Name=Msa1214710-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0|0.33|0.66|1|1|3|439|628
chr8_1 exon 75443121 75443124 75443121 ID=Msa1214710-mRNA-1:exon:25919;Parent=Msa1214710-mRNA-1
chr8_1 exon 75443627 75443632 75443627 ID=Msa1214710-mRNA-1:exon:25920;Parent=Msa1214710-mRNA-1
chr8_1 exon 75444054 75446369 75444054 ID=Msa1214710-mRNA-1:exon:25921;Parent=Msa1214710-mRNA-1
chr8_1 CDS 75443121 75443124 75443121 ID=Msa1214710-mRNA-1:cds;Parent=Msa1214710-mRNA-1
chr8_1 CDS 75443627 75443632 75443627 ID=Msa1214710-mRNA-1:cds;Parent=Msa1214710-mRNA-1
chr8_1 CDS 75444054 75445930 75444054 ID=Msa1214710-mRNA-1:cds;Parent=Msa1214710-mRNA-1
chr8_1 three_prime_UTR 75445931 75446369 75445931 ID=Msa1214710-mRNA-1:three_prime_utr;Parent=Msa1214710-mRNA-1
Gene Sequence

>Msa1214710

ATGTTTTATGGTAATGATGAATTGCATCCTGGGGGTAGGGTGTACACTATTAGTTCCAATGTTGATGTGCACTGCTCTCCTACGAAGCGAACTAGAATCAGTGCCTCATTTACCTTTGGAGCTCTTCAGCGAGCTCTTGAGCACGGGCAAGATCTTAAGCCTACCATTGAGATCCTTCCGGACGAATGTCTCTTTGAGATATTCAGACGGCTTCCAAGTGGCAAAGAGAGAAGCTCAGGTGCCTGTGTATCAAAAAGGTGGCTTATGCTTATGAGCAGTATCTGCAAAGATGACATTGAATCTGATGTAGAAACAATCTCTTCAGATGAGAGTGATGAAGATGCTGAAGGTGATGGCTACCTTACAAGGCGTTTGGAAGGGAGGAAAGCCACTGATGTAAGGCTTGCTGCTATTGCTGTTGGGACTGGTTGCCGTGGTGGACTTGGAAAGCTATCTATTAGAGGAAACAACTCGACTCGAGGTGTTACAGACCGCGGTCTCTCAGCAGTTGCTCATGGTTGCCCTTCTCTCAGATCACTTTCACTGTGGAATGTGTCTTCTATTGGTGATAAGGGTCTTTGTGAGATTGCAAAAGGATGTCATATGTTGGAGACGCTCGACTTAAGCCATTCTTCGTCGATCACCAACAAGGGTTTGATTGCAATAGCTGAAGGTTGCCCTAACTTGACAACCTTAAACATTGAATCATGCTCGATGATTGGAAATGAGGGTCTGCAAGCTGTTGCAAAGTTATGTCCCAAGTTACATTCAATCTGTATCAAGGATTGTCCTCTTGTTGGAGATCATGGTGTGTCTTGTTTGCTATATTCGGCTTCCAACTTGTCAAAGGTAAAGCTTCAGATTTTGAATATCACTGATTTTTCTCTGGCTGTTATTGGCCATTATGGAAAGGCAGTAACGAATCTGGTTCTAAGTGGTCTTAAAAATGTAAGCGAAAGAGGGTTTTGCGTCATGGGAGTTGCTCAAGGTCTACAGAAATTGATGTCACTAACTATTACTTCCTGCCAAGGGGTAACCGATGCGAGCATCGAAGCCATGGGTAAAGGTTTCCCACACCTGAAGCAGATGTGCCTTCGCAGATGTAGCTTTGTATCCGACATTGGACTGGCAGCATTTGCCAAATGCACAAGATCTCTCCAGAGCTTGCAGTTGGAAGAGTGTAACAGATTCACCCAATGTGGGATTTTCTATGCCCTTTCAAACATCAAAACGAAGTTGAAATCATTTACACTTGTGAAGTGTATGGGAATTAAAGACATTGATGTGGAAGTATCTATGCTTTCACCTTGCAAGTCTCTTCGATCTTTAACCATTCAAAACTGTCCTGGTTTCGGCAGTGCTAGCATGGCTGTGGTTGGGAAATTGTGTCCCCAACTTCAGCATGTTGATCTGACTGGACTTTGCGGCATAACTGACGCTGGCCTTCTCCCTCTTTTGGAGAATTGTGAGGCTGGACTTGTCAAGGTGAACCTTGCAGGTTGCTGGAACTTGACAGATTACATAGTTTCCATGTTGGCCAGGCTACATGGTGGAACTCTCGAAATACTAAACCTCGATGGATGCCAGAATATTACTGATGCAAGTTTGGCTGCAGTTGCAGACGACTGCTTCCTGTTGAATGATCTAGATGTCTCAAAGTGTGCAATCACTGATGCAGGCATAGCCGTTCTCTCTCGTGCTGATCATCTTAGTATGCGAGTGCTCTCTATGTCTGACTGTTCAGGTATATCGAACAAGTGTGTGCCTTTCCTGGTGAAATTAGGCCAGGCGTTGTCGGGCTTGAATATTAAAAATTGCAATACAATTGACAGCAATGCAATTGAGTTTCTCGTGGAGAATTTATGGAGATGTGATATTCTGGCCTAA
Protein sequence

>Msa1214710

MFYGNDELHPGGRVYTISSNVDVHCSPTKRTRISASFTFGALQRALEHGQDLKPTIEILPDECLFEIFRRLPSGKERSSGACVSKRWLMLMSSICKDDIESDVETISSDESDEDAEGDGYLTRRLEGRKATDVRLAAIAVGTGCRGGLGKLSIRGNNSTRGVTDRGLSAVAHGCPSLRSLSLWNVSSIGDKGLCEIAKGCHMLETLDLSHSSSITNKGLIAIAEGCPNLTTLNIESCSMIGNEGLQAVAKLCPKLHSICIKDCPLVGDHGVSCLLYSASNLSKVKLQILNITDFSLAVIGHYGKAVTNLVLSGLKNVSERGFCVMGVAQGLQKLMSLTITSCQGVTDASIEAMGKGFPHLKQMCLRRCSFVSDIGLAAFAKCTRSLQSLQLEECNRFTQCGIFYALSNIKTKLKSFTLVKCMGIKDIDVEVSMLSPCKSLRSLTIQNCPGFGSASMAVVGKLCPQLQHVDLTGLCGITDAGLLPLLENCEAGLVKVNLAGCWNLTDYIVSMLARLHGGTLEILNLDGCQNITDASLAAVADDCFLLNDLDVSKCAITDAGIAVLSRADHLSMRVLSMSDCSGISNKCVPFLVKLGQALSGLNIKNCNTIDSNAIEFLVENLWRCDILA*