Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1214780 | XP_003609343.2 | 95.103 | 633 | 31 | 0 | 1 | 633 | 1 | 633 | 0.0 | 1169 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1214780 | sp|Q9SKK0|EBF1_ARATH | 51.724 | 638 | 279 | 7 | 8 | 633 | 8 | 628 | 0.0 | 642 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0029700 | Msa1214780 | 0.838142 | 3.427054e-57 | -8.615850e-47 |
Msa0080020 | Msa1214780 | 0.832940 | 7.097257e-56 | -8.615850e-47 |
Msa0110240 | Msa1214780 | 0.817089 | 3.951318e-52 | -8.615850e-47 |
Msa0124960 | Msa1214780 | 0.835248 | 1.873924e-56 | -8.615850e-47 |
Msa0154730 | Msa1214780 | 0.843129 | 1.694437e-58 | -8.615850e-47 |
Msa0191260 | Msa1214780 | 0.803563 | 3.283831e-49 | -8.615850e-47 |
Msa0267230 | Msa1214780 | 0.812975 | 3.235233e-51 | -8.615850e-47 |
Msa1128720 | Msa1214780 | 0.817481 | 3.224646e-52 | -8.615850e-47 |
Msa1165010 | Msa1214780 | 0.801588 | 8.389842e-49 | -8.615850e-47 |
Msa1214710 | Msa1214780 | 0.964736 | 1.054615e-123 | -8.615850e-47 |
Msa1214780 | Msa1262420 | 0.939535 | 1.079234e-99 | -8.615850e-47 |
Msa1214780 | Msa1300730 | 0.987263 | 1.243465e-169 | -8.615850e-47 |
Msa1214780 | Msa1393930 | 0.808662 | 2.773998e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1214780 | MtrunA17_Chr4g0063841 | 95.103 | 633 | 31 | 0 | 1 | 633 | 1 | 633 | 0.0 | 1169 |
Msa1214780 | MtrunA17_Chr1g0149351 | 61.389 | 619 | 229 | 4 | 21 | 633 | 29 | 643 | 0.0 | 739 |
Msa1214780 | MtrunA17_Chr3g0137771 | 55.814 | 602 | 258 | 3 | 34 | 632 | 44 | 640 | 0.0 | 642 |
Msa1214780 | MtrunA17_Chr4g0063861 | 82.564 | 390 | 68 | 0 | 244 | 633 | 1 | 390 | 0.0 | 622 |
Msa1214780 | MtrunA17_Chr4g0063861 | 24.812 | 399 | 242 | 9 | 167 | 536 | 2 | 371 | 1.52e-18 | 88.2 |
Msa1214780 | MtrunA17_Chr4g0063861 | 23.729 | 295 | 190 | 7 | 152 | 414 | 92 | 383 | 4.99e-11 | 65.1 |
Msa1214780 | MtrunA17_Chr4g0063851 | 81.921 | 177 | 19 | 3 | 1 | 171 | 1 | 170 | 5.84e-91 | 281 |
Msa1214780 | MtrunA17_Chr2g0286991 | 25.990 | 581 | 367 | 16 | 64 | 597 | 11 | 575 | 8.29e-40 | 154 |
Msa1214780 | MtrunA17_Chr2g0286991 | 26.407 | 462 | 300 | 10 | 167 | 625 | 153 | 577 | 2.65e-35 | 141 |
Msa1214780 | MtrunA17_Chr2g0286991 | 27.873 | 409 | 283 | 11 | 219 | 625 | 127 | 525 | 4.34e-25 | 110 |
Msa1214780 | MtrunA17_Chr2g0286991 | 29.856 | 278 | 160 | 5 | 144 | 418 | 340 | 585 | 6.72e-24 | 106 |
Msa1214780 | MtrunA17_Chr2g0286991 | 28.435 | 313 | 210 | 6 | 167 | 474 | 281 | 584 | 5.20e-22 | 100 |
Msa1214780 | MtrunA17_Chr7g0272131 | 28.764 | 445 | 282 | 11 | 154 | 586 | 184 | 605 | 8.23e-30 | 125 |
Msa1214780 | MtrunA17_Chr7g0272131 | 26.496 | 468 | 274 | 14 | 182 | 620 | 135 | 561 | 2.80e-21 | 98.6 |
Msa1214780 | MtrunA17_Chr7g0272131 | 26.263 | 297 | 186 | 6 | 165 | 460 | 399 | 663 | 3.20e-19 | 92.0 |
Msa1214780 | MtrunA17_Chr4g0004901 | 27.021 | 470 | 299 | 16 | 129 | 583 | 179 | 619 | 8.32e-26 | 112 |
Msa1214780 | MtrunA17_Chr4g0004901 | 26.250 | 480 | 316 | 15 | 167 | 619 | 135 | 603 | 9.45e-25 | 109 |
Msa1214780 | MtrunA17_Chr4g0004901 | 29.204 | 339 | 203 | 10 | 166 | 503 | 366 | 668 | 2.54e-21 | 98.6 |
Msa1214780 | MtrunA17_Chr1g0212071 | 24.706 | 425 | 277 | 11 | 62 | 478 | 18 | 407 | 1.18e-25 | 110 |
Msa1214780 | MtrunA17_Chr1g0212071 | 25.587 | 426 | 280 | 11 | 95 | 508 | 10 | 410 | 1.23e-17 | 85.9 |
Msa1214780 | MtrunA17_Chr1g0212071 | 23.469 | 294 | 195 | 6 | 349 | 614 | 94 | 385 | 3.37e-16 | 81.3 |
Msa1214780 | MtrunA17_Chr1g0212071 | 31.122 | 196 | 131 | 4 | 428 | 622 | 94 | 286 | 5.94e-16 | 80.5 |
Msa1214780 | MtrunA17_Chr8g0347711 | 27.174 | 368 | 223 | 10 | 60 | 403 | 11 | 357 | 4.21e-20 | 92.8 |
Msa1214780 | MtrunA17_Chr3g0125671 | 31.183 | 186 | 102 | 2 | 201 | 386 | 123 | 282 | 5.94e-18 | 86.3 |
Msa1214780 | MtrunA17_Chr3g0125671 | 32.877 | 146 | 71 | 3 | 134 | 255 | 140 | 282 | 6.87e-11 | 64.3 |
Msa1214780 | MtrunA17_Chr4g0008501 | 22.625 | 579 | 392 | 21 | 49 | 597 | 30 | 582 | 7.38e-17 | 84.3 |
Msa1214780 | MtrunA17_Chr1g0176031 | 30.204 | 245 | 153 | 5 | 165 | 399 | 90 | 326 | 8.16e-16 | 79.3 |
Msa1214780 | MtrunA17_Chr1g0176031 | 21.321 | 333 | 198 | 8 | 180 | 506 | 52 | 326 | 1.05e-14 | 75.9 |
Msa1214780 | MtrunA17_Chr1g0176031 | 29.918 | 244 | 160 | 8 | 335 | 577 | 107 | 340 | 1.49e-14 | 75.5 |
Msa1214780 | MtrunA17_Chr1g0150971 | 24.883 | 426 | 245 | 15 | 179 | 583 | 339 | 710 | 8.82e-16 | 81.3 |
Msa1214780 | MtrunA17_Chr1g0152951 | 24.444 | 360 | 207 | 10 | 215 | 570 | 134 | 432 | 1.13e-13 | 73.9 |
Msa1214780 | MtrunA17_Chr1g0152951 | 37.190 | 121 | 72 | 3 | 168 | 286 | 320 | 438 | 5.22e-11 | 65.5 |
Msa1214780 | MtrunA17_Chr4g0070541 | 26.744 | 258 | 181 | 7 | 336 | 590 | 397 | 649 | 1.14e-13 | 74.3 |
Msa1214780 | MtrunA17_Chr1g0159531 | 33.333 | 153 | 95 | 3 | 134 | 285 | 128 | 274 | 1.61e-13 | 72.4 |
Msa1214780 | MtrunA17_Chr1g0159531 | 28.505 | 214 | 141 | 3 | 164 | 365 | 100 | 313 | 8.11e-13 | 70.5 |
Msa1214780 | MtrunA17_Chr4g0018891 | 25.532 | 329 | 208 | 13 | 219 | 545 | 189 | 482 | 6.32e-12 | 68.2 |
Msa1214780 | MtrunA17_Chr8g0352431 | 23.965 | 459 | 286 | 17 | 171 | 597 | 131 | 558 | 8.79e-12 | 68.2 |
Msa1214780 | MtrunA17_Chr8g0342371 | 23.649 | 444 | 307 | 15 | 171 | 597 | 136 | 564 | 1.03e-11 | 67.8 |
Msa1214780 | MtrunA17_Chr1g0150991 | 23.472 | 409 | 246 | 15 | 179 | 583 | 155 | 500 | 1.62e-11 | 67.4 |
Msa1214780 | MtrunA17_Chr2g0300611 | 24.324 | 259 | 164 | 5 | 360 | 590 | 400 | 654 | 1.74e-11 | 67.4 |
Msa1214780 | MtrunA17_Chr3g0079141 | 22.652 | 543 | 312 | 21 | 23 | 544 | 11 | 466 | 2.44e-11 | 66.6 |
Msa1214780 | MtrunA17_Chr4g0070521 | 24.254 | 268 | 185 | 7 | 336 | 590 | 28 | 290 | 2.84e-11 | 65.5 |
Msa1214780 | MtrunA17_Chr5g0436511 | 25.526 | 380 | 210 | 18 | 166 | 506 | 145 | 490 | 3.71e-11 | 66.2 |
Msa1214780 | MtrunA17_Chr7g0251831 | 28.780 | 205 | 121 | 9 | 187 | 374 | 315 | 511 | 4.71e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1214780 | AT2G25490.1 | 51.724 | 638 | 279 | 7 | 8 | 633 | 8 | 628 | 0.0 | 642 |
Msa1214780 | AT5G25350.1 | 52.276 | 637 | 284 | 7 | 1 | 632 | 1 | 622 | 0.0 | 606 |
Msa1214780 | AT4G15475.1 | 28.328 | 586 | 347 | 19 | 64 | 597 | 11 | 575 | 3.69e-43 | 164 |
Msa1214780 | AT4G15475.1 | 27.378 | 347 | 214 | 6 | 129 | 474 | 275 | 584 | 1.25e-27 | 118 |
Msa1214780 | AT4G15475.1 | 26.575 | 365 | 232 | 7 | 167 | 531 | 281 | 609 | 1.65e-23 | 105 |
Msa1214780 | AT4G15475.1 | 24.118 | 340 | 223 | 9 | 309 | 619 | 109 | 442 | 3.37e-16 | 82.8 |
Msa1214780 | AT4G15475.1 | 30.769 | 156 | 103 | 3 | 143 | 298 | 443 | 593 | 6.26e-12 | 68.9 |
Msa1214780 | AT5G27920.1 | 24.665 | 523 | 332 | 12 | 151 | 621 | 90 | 602 | 4.36e-28 | 120 |
Msa1214780 | AT5G27920.1 | 29.268 | 246 | 168 | 5 | 167 | 411 | 364 | 604 | 1.73e-17 | 87.0 |
Msa1214780 | AT5G23340.1 | 24.941 | 421 | 280 | 8 | 62 | 478 | 8 | 396 | 6.12e-24 | 105 |
Msa1214780 | AT5G23340.1 | 24.684 | 316 | 207 | 4 | 296 | 610 | 85 | 370 | 3.53e-21 | 96.7 |
Msa1214780 | AT5G23340.1 | 31.658 | 199 | 132 | 4 | 428 | 625 | 84 | 279 | 7.14e-19 | 89.7 |
Msa1214780 | AT5G01720.1 | 26.200 | 500 | 298 | 17 | 167 | 610 | 85 | 569 | 1.81e-22 | 102 |
Msa1214780 | AT5G01720.1 | 23.604 | 394 | 236 | 5 | 166 | 536 | 238 | 589 | 1.49e-20 | 96.7 |
Msa1214780 | AT5G01720.1 | 20.924 | 368 | 236 | 9 | 162 | 505 | 260 | 596 | 4.48e-11 | 66.6 |
Msa1214780 | AT5G01720.1 | 29.412 | 170 | 89 | 2 | 192 | 336 | 443 | 606 | 4.72e-11 | 66.2 |
Msa1214780 | AT1G21410.2 | 28.351 | 194 | 113 | 2 | 193 | 386 | 104 | 271 | 6.43e-17 | 83.2 |
Msa1214780 | AT1G21410.2 | 27.004 | 237 | 110 | 5 | 167 | 376 | 130 | 330 | 8.27e-14 | 73.9 |
Msa1214780 | AT1G21410.1 | 28.351 | 194 | 113 | 2 | 193 | 386 | 104 | 271 | 6.43e-17 | 83.2 |
Msa1214780 | AT1G21410.1 | 27.004 | 237 | 110 | 5 | 167 | 376 | 130 | 330 | 8.27e-14 | 73.9 |
Msa1214780 | AT3G58530.1 | 27.132 | 258 | 154 | 7 | 145 | 399 | 102 | 328 | 1.83e-15 | 79.0 |
Msa1214780 | AT3G58530.1 | 21.557 | 334 | 197 | 7 | 180 | 506 | 53 | 328 | 1.24e-13 | 73.2 |
Msa1214780 | AT3G58530.1 | 25.000 | 244 | 154 | 5 | 390 | 608 | 112 | 351 | 1.09e-11 | 67.4 |
Msa1214780 | AT1G47056.1 | 25.962 | 416 | 216 | 12 | 192 | 604 | 116 | 442 | 3.30e-15 | 79.3 |
Msa1214780 | AT1G47056.1 | 33.918 | 171 | 102 | 5 | 124 | 292 | 260 | 421 | 1.61e-13 | 73.9 |
Msa1214780 | AT1G80630.1 | 21.981 | 414 | 275 | 10 | 181 | 559 | 108 | 508 | 5.59e-15 | 78.6 |
Msa1214780 | AT1G77000.2 | 28.947 | 228 | 143 | 5 | 167 | 376 | 104 | 330 | 2.77e-14 | 75.5 |
Msa1214780 | AT1G77000.1 | 28.947 | 228 | 143 | 5 | 167 | 376 | 104 | 330 | 2.77e-14 | 75.5 |
Msa1214780 | AT3G07550.1 | 23.098 | 368 | 239 | 8 | 52 | 408 | 6 | 340 | 2.27e-13 | 72.8 |
Msa1214780 | AT3G07550.2 | 23.098 | 368 | 239 | 8 | 52 | 408 | 6 | 340 | 2.27e-13 | 72.8 |
Msa1214780 | AT3G07550.3 | 24.167 | 360 | 218 | 8 | 52 | 408 | 6 | 313 | 5.01e-13 | 71.6 |
Msa1214780 | AT4G30640.1 | 29.808 | 208 | 127 | 5 | 51 | 256 | 10 | 200 | 2.04e-12 | 68.9 |
Msa1214780 | AT1G77000.3 | 28.324 | 173 | 98 | 2 | 193 | 365 | 104 | 250 | 1.44e-11 | 65.9 |
Msa1214780 | AT1G77000.4 | 28.324 | 173 | 98 | 2 | 193 | 365 | 104 | 250 | 1.44e-11 | 65.9 |
Msa1214780 | AT5G67250.1 | 23.913 | 368 | 196 | 10 | 216 | 570 | 117 | 413 | 4.31e-11 | 66.2 |
Msa1214780 | AT4G07400.1 | 37.008 | 127 | 76 | 3 | 168 | 292 | 330 | 454 | 6.85e-11 | 65.9 |
Find 196 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGCATGATTCAATGTTTA+AGG | 0.123906 | 8_1:-75559769 | None:intergenic |
CGCTGGCCTTCTCCCTCTTT+TGG | 0.142205 | 8_1:+75560514 | Msa1214780:CDS |
AGTTTCTCGTGGAGAATTTA+TGG | 0.177171 | 8_1:+75560921 | Msa1214780:CDS |
CTGGCTGTTATTGGCCATTA+TGG | 0.192129 | 8_1:+75559963 | Msa1214780:CDS |
TGAAGAGCTCCAAAGGTAAA+TGG | 0.215306 | 8_1:-75559183 | None:intergenic |
CGCGATGGAACTGCTGAATA+AGG | 0.264291 | 8_1:+75560966 | Msa1214780:three_prime_UTR |
ATGTTTAAGGTTGTCAAGTT+AGG | 0.283107 | 8_1:-75559756 | None:intergenic |
AGAAATATAAAGAGTGGTTT+TGG | 0.296107 | 8_1:+75558039 | Msa1214780:five_prime_UTR |
TCAATATCAAAGTACAAATA+TGG | 0.313413 | 8_1:+75557896 | Msa1214780:five_prime_UTR |
TGTTATATTCTGTTTGTTGC+AGG | 0.317403 | 8_1:+75561301 | Msa1214780:three_prime_UTR |
TGTGTCTTGTTTGCTATATT+CGG | 0.319855 | 8_1:+75559887 | Msa1214780:CDS |
TCGTTACTGCCTTTCCATAA+TGG | 0.327153 | 8_1:-75559977 | None:intergenic |
GAATATTACTGATGCAAGTT+TGG | 0.327338 | 8_1:+75560664 | Msa1214780:CDS |
TTTATGGAGATGTGATATTC+TGG | 0.332414 | 8_1:+75560937 | Msa1214780:CDS |
CTGGAGAGATCTTGTGCATT+TGG | 0.332649 | 8_1:-75560216 | None:intergenic |
CTCTCTATGTCTGACTGTTC+AGG | 0.334066 | 8_1:+75560800 | Msa1214780:CDS |
AACTTGCATCAGTAATATTC+TGG | 0.336340 | 8_1:-75560661 | None:intergenic |
TGTCCTCTTGTTGGAGATCA+TGG | 0.346783 | 8_1:+75559864 | Msa1214780:CDS |
ATTCAAAACTGTCCTGGTTT+CGG | 0.358584 | 8_1:+75560410 | Msa1214780:CDS |
CTGTTTCTTGTGCTCATGCC+TGG | 0.359324 | 8_1:+75558478 | Msa1214780:exon |
CTTGTCAAGGTGAACCTTGC+AGG | 0.363717 | 8_1:+75560554 | Msa1214780:CDS |
AGGTGAACCTTGCAGGTTGC+TGG | 0.365852 | 8_1:+75560561 | Msa1214780:CDS |
GCTGAATAAGGAAATGCTAA+TGG | 0.368749 | 8_1:+75560978 | Msa1214780:three_prime_UTR |
GTGCCTTTCCTGGTGAAATT+AGG | 0.368798 | 8_1:+75560839 | Msa1214780:CDS |
GTTGATCTGACTGGACTTTG+TGG | 0.370762 | 8_1:+75560482 | Msa1214780:CDS |
ACTCTAGATCGCACATTGCC+TGG | 0.374175 | 8_1:+75561256 | Msa1214780:three_prime_UTR |
TGCGAAGGCACATCTGCTTC+AGG | 0.374917 | 8_1:-75560154 | None:intergenic |
ATTTACACTTGTGAAGTGTA+TGG | 0.378579 | 8_1:+75560322 | Msa1214780:CDS |
GGCTTGCTGCTATTGCTGTT+GGG | 0.383869 | 8_1:+75559478 | Msa1214780:CDS |
ATCAGTGCCCCATTTACCTT+TGG | 0.383910 | 8_1:+75559174 | Msa1214780:CDS |
GAAATTAGGCCAGGCGTTGT+CGG | 0.389515 | 8_1:+75560853 | Msa1214780:CDS |
GCTGCTATTGCTGTTGGGAC+TGG | 0.389778 | 8_1:+75559483 | Msa1214780:CDS |
CTGTGGAATGTGTCTTCTAT+TGG | 0.391657 | 8_1:+75559621 | Msa1214780:CDS |
GAAGAGCTCCAAAGGTAAAT+GGG | 0.401450 | 8_1:-75559182 | None:intergenic |
TGTGTCTTCTATTGGTGATA+AGG | 0.403727 | 8_1:+75559629 | Msa1214780:CDS |
ACCATGTAGCCTGGCCAACT+TGG | 0.404543 | 8_1:-75560606 | None:intergenic |
AGAGGTATATAACAGAGAAA+AGG | 0.404807 | 8_1:-75558388 | None:intergenic |
ACTGGTTGCCGTGGTGGACT+TGG | 0.405676 | 8_1:+75559501 | Msa1214780:CDS |
GTGTCTTCTATTGGTGATAA+GGG | 0.408571 | 8_1:+75559630 | Msa1214780:CDS |
ATTGAATCATGCTCTATGAT+TGG | 0.408866 | 8_1:+75559777 | Msa1214780:CDS |
GAACAAGTGTGTGCCTTTCC+TGG | 0.410656 | 8_1:+75560829 | Msa1214780:CDS |
CAGATCAACATGCTGAAGTT+GGG | 0.413419 | 8_1:-75560468 | None:intergenic |
TCCCTTCCAAACGCCTTGTA+AGG | 0.414436 | 8_1:-75559437 | None:intergenic |
TCAGCAGTTCCATCGCGATT+AGG | 0.414562 | 8_1:-75560960 | None:intergenic |
AGGCTTGCTGCTATTGCTGT+TGG | 0.416928 | 8_1:+75559477 | Msa1214780:CDS |
CTTGGAAAGCTATCTATTAG+AGG | 0.419353 | 8_1:+75559519 | Msa1214780:CDS |
TGGCTACCTTACAAGGCGTT+TGG | 0.422778 | 8_1:+75559431 | Msa1214780:CDS |
TCATGGAACTATAGCCAAAA+GGG | 0.423795 | 8_1:-75561199 | None:intergenic |
GAGGTATATAACAGAGAAAA+GGG | 0.425382 | 8_1:-75558387 | None:intergenic |
GAGCTTCTCTCTTTGCCACT+TGG | 0.430900 | 8_1:-75559291 | None:intergenic |
CTCATGGAACTATAGCCAAA+AGG | 0.433792 | 8_1:-75561200 | None:intergenic |
TGTTTAAGGTTGTCAAGTTA+GGG | 0.434609 | 8_1:-75559755 | None:intergenic |
ATCAAGGATTGTCCTCTTGT+TGG | 0.435290 | 8_1:+75559855 | Msa1214780:CDS |
GGTAATGATGAATTGCATCC+TGG | 0.437251 | 8_1:+75559087 | Msa1214780:intron |
TGCGGCGCGGTTTGTTGACT+CGG | 0.438068 | 8_1:+75561091 | Msa1214780:three_prime_UTR |
TATTGCAATCAAACCCTTGT+TGG | 0.439489 | 8_1:-75559721 | None:intergenic |
GACTATCAAGTGTGGATTTG+CGG | 0.442563 | 8_1:+75561073 | Msa1214780:three_prime_UTR |
TGTTGGTGATCGACGAAGAA+TGG | 0.444320 | 8_1:-75559704 | None:intergenic |
AAATTAGGCCAGGCGTTGTC+GGG | 0.445281 | 8_1:+75560854 | Msa1214780:CDS |
ATTTGTACTTTGATATTGAC+CGG | 0.448862 | 8_1:-75557892 | None:intergenic |
TGGAAAGGCAGTAACGAATC+TGG | 0.449057 | 8_1:+75559983 | Msa1214780:CDS |
GCCTACCATTGAGATCCTTC+CGG | 0.449888 | 8_1:+75559236 | Msa1214780:CDS |
TTGAATAACCTTGCCTTACA+AGG | 0.450924 | 8_1:-75557926 | None:intergenic |
TCCAAGTTGGCCAGGCTACA+TGG | 0.454321 | 8_1:+75560605 | Msa1214780:CDS |
AGTTACTGAGTCTTGGTTGA+TGG | 0.456016 | 8_1:+75561228 | Msa1214780:three_prime_UTR |
GTTACATTCAATCTGTATCA+AGG | 0.456342 | 8_1:+75559839 | Msa1214780:CDS |
AAGCTTTACCTTTGACAAGT+TGG | 0.456600 | 8_1:-75559913 | None:intergenic |
TATTCAAGCCCGACAACGCC+TGG | 0.460376 | 8_1:-75560862 | None:intergenic |
AGTGGCAAAGAGAGAAGCTC+AGG | 0.464804 | 8_1:+75559294 | Msa1214780:CDS |
TGTGATATTCAGCTTATACT+TGG | 0.466407 | 8_1:+75558443 | Msa1214780:five_prime_UTR |
CTCTAGATCGCACATTGCCT+GGG | 0.467454 | 8_1:+75561257 | Msa1214780:three_prime_UTR |
AGACATCTAGATCATTCAAC+AGG | 0.469504 | 8_1:-75560709 | None:intergenic |
TCAGATCAACATGCTGAAGT+TGG | 0.473467 | 8_1:-75560469 | None:intergenic |
GGTCTTTGTGAGATTGCAAA+AGG | 0.475591 | 8_1:+75559651 | Msa1214780:CDS |
TTAACCATTCAAAACTGTCC+TGG | 0.477543 | 8_1:+75560404 | Msa1214780:CDS |
GGCATAGAAAATCCCACATT+GGG | 0.478588 | 8_1:-75560270 | None:intergenic |
ATATGGTTAACCTCCTTGTA+AGG | 0.479102 | 8_1:+75557913 | Msa1214780:five_prime_UTR |
ACTCTTCCAACTGCAAGCTC+TGG | 0.480930 | 8_1:-75560235 | None:intergenic |
GATACAGATTGAATGTAACT+TGG | 0.482768 | 8_1:-75559835 | None:intergenic |
TTCAGCGAGCTCTTGAGCAC+GGG | 0.483184 | 8_1:+75559202 | Msa1214780:CDS |
CAGGTGCCTGTGTATCAAAA+AGG | 0.484862 | 8_1:+75559313 | Msa1214780:CDS |
GCCTCACAATTCTCCAAAAG+AGG | 0.487248 | 8_1:-75560527 | None:intergenic |
ATGCTCTATGATTGGAAATG+AGG | 0.488753 | 8_1:+75559785 | Msa1214780:CDS |
TTTCCTGGTGAAATTAGGCC+AGG | 0.489686 | 8_1:+75560844 | Msa1214780:CDS |
GAGAGTTCCACCATGTAGCC+TGG | 0.492311 | 8_1:-75560615 | None:intergenic |
CTTTGTATCCGACATTGGAC+TGG | 0.492327 | 8_1:+75560184 | Msa1214780:CDS |
ACATAGTTTCCAAGTTGGCC+AGG | 0.504234 | 8_1:+75560597 | Msa1214780:CDS |
GGCACATCTGCTTCAGGTGT+GGG | 0.504975 | 8_1:-75560148 | None:intergenic |
CTTCAGCGAGCTCTTGAGCA+CGG | 0.505562 | 8_1:+75559201 | Msa1214780:CDS |
TGGTTTCGGCAGTGCTAGCA+TGG | 0.505703 | 8_1:+75560424 | Msa1214780:CDS |
AGTGCTAGCATGGCTGTGGT+TGG | 0.506787 | 8_1:+75560434 | Msa1214780:CDS |
TGCTCGCATCGGTTACCCCT+TGG | 0.507539 | 8_1:-75560103 | None:intergenic |
AGATTACATAGTTTCCAAGT+TGG | 0.509911 | 8_1:+75560592 | Msa1214780:CDS |
CGCATCGGTTACCCCTTGGC+AGG | 0.510702 | 8_1:-75560099 | None:intergenic |
AAGTGTGCAATCACTGATGC+AGG | 0.512250 | 8_1:+75560734 | Msa1214780:CDS |
GGTCTCTCAGCAGTTGCTCA+TGG | 0.513210 | 8_1:+75559573 | Msa1214780:CDS |
GGAGGAAAGCCACTGATGTA+AGG | 0.514553 | 8_1:+75559457 | Msa1214780:CDS |
ATCTCTCCAGAGCTTGCAGT+TGG | 0.514820 | 8_1:+75560229 | Msa1214780:CDS |
TGCGTCATGGGAGTTGCTCA+AGG | 0.518086 | 8_1:+75560044 | Msa1214780:CDS |
AAGGTGATGGCTACCTTACA+AGG | 0.519297 | 8_1:+75559424 | Msa1214780:CDS |
GGAAACAAACCAAAACTCCT+TGG | 0.519774 | 8_1:-75561121 | None:intergenic |
TGCTCTATGATTGGAAATGA+GGG | 0.521873 | 8_1:+75559786 | Msa1214780:CDS |
GTGCTAGCATGGCTGTGGTT+GGG | 0.523567 | 8_1:+75560435 | Msa1214780:CDS |
CCACTCTGATTGACACGGCC+AGG | 0.524101 | 8_1:-75558496 | None:intergenic |
TACCTTACAAGGCGTTTGGA+AGG | 0.525492 | 8_1:+75559435 | Msa1214780:CDS |
AGCATCGAAGCCATGGGTAA+AGG | 0.526861 | 8_1:+75560122 | Msa1214780:CDS |
TTTACACTTGTGAAGTGTAT+GGG | 0.528626 | 8_1:+75560323 | Msa1214780:CDS |
TGTAGCTTTGTATCCGACAT+TGG | 0.531778 | 8_1:+75560179 | Msa1214780:CDS |
CTTCAGCATGTTGATCTGAC+TGG | 0.536194 | 8_1:+75560473 | Msa1214780:CDS |
ATGAAATTGGGCCGTTGAGG+AGG | 0.536524 | 8_1:-75557952 | None:intergenic |
TGCAAAAGGATGTCATATGT+TGG | 0.540414 | 8_1:+75559665 | Msa1214780:CDS |
GTGGTATTTGCTGAGGTGGT+TGG | 0.541778 | 8_1:+75558074 | Msa1214780:five_prime_UTR |
CTGATTCTAGTTCGCTTCGT+AGG | 0.543276 | 8_1:-75559156 | None:intergenic |
GTTGGGACTGGTTGCCGTGG+TGG | 0.544249 | 8_1:+75559495 | Msa1214780:CDS |
GTAACATTGTACTTATTCTG+TGG | 0.544585 | 8_1:+75558180 | Msa1214780:five_prime_UTR |
GTAATGATGAATTGCATCCT+GGG | 0.545999 | 8_1:+75559088 | Msa1214780:CDS |
ATCTCAAAGAGACATTCGTC+CGG | 0.551142 | 8_1:-75559255 | None:intergenic |
ACTCAGTAACTGCATTCTCA+TGG | 0.552061 | 8_1:-75561216 | None:intergenic |
GAAAGTGGTATTTGCTGAGG+TGG | 0.552266 | 8_1:+75558070 | Msa1214780:five_prime_UTR |
TTCGGCTTCCAACTTGTCAA+AGG | 0.552626 | 8_1:+75559905 | Msa1214780:CDS |
ATGCTAGCACTGCCGAAACC+AGG | 0.554879 | 8_1:-75560422 | None:intergenic |
CGGCAGTGCTAGCATGGCTG+TGG | 0.556009 | 8_1:+75560430 | Msa1214780:CDS |
ATTAATAATGAAGCAGCAGA+TGG | 0.557908 | 8_1:+75561018 | Msa1214780:three_prime_UTR |
ATACAGATTGAATGTAACTT+GGG | 0.559199 | 8_1:-75559834 | None:intergenic |
AGGCACATCTGCTTCAGGTG+TGG | 0.560606 | 8_1:-75560149 | None:intergenic |
AGAATGCAGTTACTGAGTCT+TGG | 0.560746 | 8_1:+75561221 | Msa1214780:three_prime_UTR |
GTGAAAGTGATCTGAGAGAA+GGG | 0.561763 | 8_1:-75559599 | None:intergenic |
TGGCCTAATTTCACCAGGAA+AGG | 0.564441 | 8_1:-75560842 | None:intergenic |
ATGATCAGCACGAGAGAGAA+CGG | 0.564713 | 8_1:-75560762 | None:intergenic |
ACCTTACAAGGCGTTTGGAA+GGG | 0.565254 | 8_1:+75559436 | Msa1214780:CDS |
AGCTCGCTGAAGAGCTCCAA+AGG | 0.565614 | 8_1:-75559190 | None:intergenic |
GGTTTGATTGCAATAGCAGA+AGG | 0.570491 | 8_1:+75559729 | Msa1214780:CDS |
GTTAACCTCCTTGTAAGGCA+AGG | 0.573809 | 8_1:+75557918 | Msa1214780:five_prime_UTR |
TAACTATTACTTCCTGCCAA+GGG | 0.575789 | 8_1:+75560087 | Msa1214780:CDS |
TTTATGAAATTGGGCCGTTG+AGG | 0.576561 | 8_1:-75557955 | None:intergenic |
CTCGAAATACTAAACCTCGA+TGG | 0.579655 | 8_1:+75560635 | Msa1214780:CDS |
CAAAGAGACATTCGTCCGGA+AGG | 0.580269 | 8_1:-75559251 | None:intergenic |
GTGTGGGAAACCTTTACCCA+TGG | 0.581206 | 8_1:-75560132 | None:intergenic |
ATGTTGTTGAATAGATGAAT+CGG | 0.584105 | 8_1:+75557840 | None:intergenic |
AGCAGCAAGCCTTACATCAG+TGG | 0.584954 | 8_1:-75559466 | None:intergenic |
GGGCATAGAAAATCCCACAT+TGG | 0.585502 | 8_1:-75560271 | None:intergenic |
CAATGCAATTGAGTTTCTCG+TGG | 0.586036 | 8_1:+75560910 | Msa1214780:CDS |
TTCTTCGTCGATCACCAACA+AGG | 0.587327 | 8_1:+75559707 | Msa1214780:CDS |
AGAGCAGTGCACATCAACAT+TGG | 0.587717 | 8_1:-75559133 | None:intergenic |
TGTGAAAGTGGTATTTGCTG+AGG | 0.587833 | 8_1:+75558067 | Msa1214780:five_prime_UTR |
GTCTCTTTGAGATATTCAGA+CGG | 0.588078 | 8_1:+75559265 | Msa1214780:CDS |
GGGAATTAAAGACATTGATG+TGG | 0.591377 | 8_1:+75560343 | Msa1214780:CDS |
TTACAAGGCGTTTGGAAGGG+AGG | 0.593323 | 8_1:+75559439 | Msa1214780:CDS |
CCTCACAATTCTCCAAAAGA+GGG | 0.598079 | 8_1:-75560526 | None:intergenic |
ATATTCTGGCCTAATCGCGA+TGG | 0.598949 | 8_1:+75560951 | Msa1214780:exon |
TGTTATTGGCCATTATGGAA+AGG | 0.600886 | 8_1:+75559968 | Msa1214780:CDS |
CTCTCAGATCACTTTCACTG+TGG | 0.601821 | 8_1:+75559604 | Msa1214780:CDS |
AGTGAAAGTGATCTGAGAGA+AGG | 0.602549 | 8_1:-75559600 | None:intergenic |
CATGGCTTCGATGCTCGCAT+CGG | 0.603091 | 8_1:-75560114 | None:intergenic |
GATGAAGATGCTGAAGGTGA+TGG | 0.605262 | 8_1:+75559411 | Msa1214780:CDS |
AGGCAATGTGCGATCTAGAG+TGG | 0.606144 | 8_1:-75561254 | None:intergenic |
TGTAACAGATTCACCCAATG+TGG | 0.606794 | 8_1:+75560257 | Msa1214780:CDS |
AGATCAACATGCTGAAGTTG+GGG | 0.609536 | 8_1:-75560467 | None:intergenic |
CTAACTATTACTTCCTGCCA+AGG | 0.610927 | 8_1:+75560086 | Msa1214780:CDS |
ACACCATGATCTCCAACAAG+AGG | 0.615650 | 8_1:-75559867 | None:intergenic |
TCTTCGTCGATCACCAACAA+GGG | 0.621934 | 8_1:+75559708 | Msa1214780:CDS |
GAATAATGAACAAGAAAGAG+AGG | 0.622380 | 8_1:-75558406 | None:intergenic |
AAATGCTGCCAGTCCAATGT+CGG | 0.622406 | 8_1:-75560192 | None:intergenic |
AATTCTCCAAAAGAGGGAGA+AGG | 0.622832 | 8_1:-75560520 | None:intergenic |
GATGCGAGCATCGAAGCCAT+GGG | 0.623164 | 8_1:+75560116 | Msa1214780:CDS |
TTCGTCCGGAAGGATCTCAA+TGG | 0.627959 | 8_1:-75559241 | None:intergenic |
ATACAAAGCTACATCTGCGA+AGG | 0.636036 | 8_1:-75560169 | None:intergenic |
TCAAGTGTGGATTTGCGGCG+CGG | 0.636183 | 8_1:+75561078 | Msa1214780:three_prime_UTR |
TTATTCAACAACCTCCTCAA+CGG | 0.640721 | 8_1:+75557941 | Msa1214780:five_prime_UTR |
GTAACGAATCTGGTTCTAAG+TGG | 0.640999 | 8_1:+75559993 | Msa1214780:CDS |
TAATGATGAATTGCATCCTG+GGG | 0.643262 | 8_1:+75559089 | Msa1214780:CDS |
GCTGTTGGGACTGGTTGCCG+TGG | 0.645340 | 8_1:+75559492 | Msa1214780:CDS |
AAGAGCTCCAAAGGTAAATG+GGG | 0.648685 | 8_1:-75559181 | None:intergenic |
TCAAGTTCCAGCAACCTGCA+AGG | 0.650087 | 8_1:-75560568 | None:intergenic |
TTGTGAGGCTGGACTTGTCA+AGG | 0.655559 | 8_1:+75560541 | Msa1214780:CDS |
GCTGATATGACTATCAAGTG+TGG | 0.658205 | 8_1:+75561065 | Msa1214780:three_prime_UTR |
CTTTGTGGCATAACTGACGC+TGG | 0.659354 | 8_1:+75560497 | Msa1214780:CDS |
AACTATTACTTCCTGCCAAG+GGG | 0.659376 | 8_1:+75560088 | Msa1214780:CDS |
GAGCAACTGCTGAGAGACCG+CGG | 0.662248 | 8_1:-75559569 | None:intergenic |
TAATATTCTGGCATCCATCG+AGG | 0.665697 | 8_1:-75560649 | None:intergenic |
CATGGAACTATAGCCAAAAG+GGG | 0.666185 | 8_1:-75561198 | None:intergenic |
GTAACAGATTCACCCAATGT+GGG | 0.667862 | 8_1:+75560258 | Msa1214780:CDS |
TTGTCATGTAACAAACAAAG+CGG | 0.667882 | 8_1:-75558245 | None:intergenic |
GAGAGTGATGAAGATGCTGA+AGG | 0.668726 | 8_1:+75559405 | Msa1214780:CDS |
AATAACCTTGCCTTACAAGG+AGG | 0.669394 | 8_1:-75557923 | None:intergenic |
TCCGGAAGGATCTCAATGGT+AGG | 0.673037 | 8_1:-75559237 | None:intergenic |
AGAGGAAACAACTCGACTCG+AGG | 0.676030 | 8_1:+75559537 | Msa1214780:CDS |
AAAGATCGAAGAGACTTGCA+AGG | 0.680643 | 8_1:-75560383 | None:intergenic |
AGTGATACAAAGTAAAACCC+AGG | 0.687051 | 8_1:-75561274 | None:intergenic |
ATATTCAGACGGCTTCCAAG+TGG | 0.698602 | 8_1:+75559276 | Msa1214780:CDS |
AGTTACCACTCTGATTGACA+CGG | 0.709344 | 8_1:-75558501 | None:intergenic |
CCTGGCCGTGTCAATCAGAG+TGG | 0.712504 | 8_1:+75558496 | Msa1214780:CDS |
ACTCGAGGTGTTACAGACCG+CGG | 0.719268 | 8_1:+75559552 | Msa1214780:CDS |
AAGTTGGCCAGGCTACATGG+TGG | 0.728854 | 8_1:+75560608 | Msa1214780:CDS |
AATGATGAATTGCATCCTGG+GGG | 0.735856 | 8_1:+75559090 | Msa1214780:CDS |
ATAGCTTTCCAAGTCCACCA+CGG | 0.754154 | 8_1:-75559509 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTTTATATCATTATATTATA+TGG | + | chr8_1:75558692-75558711 | Msa1214780:intron | 10.0% |
!!! | TTTACCTTTTTTATGAAATT+GGG | - | chr8_1:75557967-75557986 | None:intergenic | 15.0% |
!!! | TTTTACCTTTTTTATGAAAT+TGG | - | chr8_1:75557968-75557987 | None:intergenic | 15.0% |
!! | ATAAAAAGAAATATAAAGAG+TGG | + | chr8_1:75558033-75558052 | Msa1214780:five_prime_UTR | 15.0% |
!!! | CATTAAAAAAATCGATTTTA+AGG | + | chr8_1:75558126-75558145 | Msa1214780:five_prime_UTR | 15.0% |
!!! | TTTTTAAGTTTTCTAGTTTA+TGG | + | chr8_1:75558612-75558631 | Msa1214780:intron | 15.0% |
!! | AAGAATAACAAAGAAAATAT+TGG | + | chr8_1:75558791-75558810 | Msa1214780:intron | 15.0% |
!! | TCAATATCAAAGTACAAATA+TGG | + | chr8_1:75557896-75557915 | Msa1214780:five_prime_UTR | 20.0% |
!!! | TTTATGTCTTCAATTGTTTT+GGG | - | chr8_1:75558018-75558037 | None:intergenic | 20.0% |
!!! | TTTTATGTCTTCAATTGTTT+TGG | - | chr8_1:75558019-75558038 | None:intergenic | 20.0% |
!! | GGAAATAGAAAAAAAATCTT+AGG | - | chr8_1:75558213-75558232 | None:intergenic | 20.0% |
!! | ACTAGAAAACTTAAAAATTG+AGG | - | chr8_1:75558609-75558628 | None:intergenic | 20.0% |
!!! | TTTCTTTGTTATTCTTACTA+AGG | - | chr8_1:75558787-75558806 | None:intergenic | 20.0% |
!!! | AGAACCCTTTTTATTTTTTT+TGG | + | chr8_1:75558882-75558901 | Msa1214780:intron | 20.0% |
!! | TCCACCAAAAAAAATAAAAA+GGG | - | chr8_1:75558889-75558908 | None:intergenic | 20.0% |
!! | TTCCACCAAAAAAAATAAAA+AGG | - | chr8_1:75558890-75558909 | None:intergenic | 20.0% |
!!! | TTTTATTTTTTTTGGTGGAA+TGG | + | chr8_1:75558890-75558909 | Msa1214780:intron | 20.0% |
!! | TTGTAATGATAAGTTGTAAT+TGG | + | chr8_1:75559011-75559030 | Msa1214780:intron | 20.0% |
!! | TTAAAAATGCTTGCAAAAAA+GGG | - | chr8_1:75561154-75561173 | None:intergenic | 20.0% |
!! | ATTAAAAATGCTTGCAAAAA+AGG | - | chr8_1:75561155-75561174 | None:intergenic | 20.0% |
! | ATTTGTACTTTGATATTGAC+CGG | - | chr8_1:75557895-75557914 | None:intergenic | 25.0% |
!! | AGAAATATAAAGAGTGGTTT+TGG | + | chr8_1:75558039-75558058 | Msa1214780:five_prime_UTR | 25.0% |
!!! | TTATGGTTTTAATTGATCCT+AGG | + | chr8_1:75558629-75558648 | Msa1214780:intron | 25.0% |
! | TTATGTTATGCTATAATCCT+AGG | - | chr8_1:75558649-75558668 | None:intergenic | 25.0% |
! | TATGGATGTTATATATCTTG+TGG | + | chr8_1:75558710-75558729 | Msa1214780:intron | 25.0% |
!!! | ACCCTTTTTATTTTTTTTGG+TGG | + | chr8_1:75558885-75558904 | Msa1214780:intron | 25.0% |
!!! | AGATAGTGAATTTTGTTTCT+AGG | + | chr8_1:75558980-75558999 | Msa1214780:intron | 25.0% |
!!! | GATAGTGAATTTTGTTTCTA+GGG | + | chr8_1:75558981-75559000 | Msa1214780:intron | 25.0% |
! | ATACAGATTGAATGTAACTT+GGG | - | chr8_1:75559837-75559856 | None:intergenic | 25.0% |
! | TTAAAAATGTAAGCGAAAGA+GGG | + | chr8_1:75560018-75560037 | Msa1214780:CDS | 25.0% |
!!! | TTTCGTTTTGATGTTTGAAA+GGG | - | chr8_1:75560294-75560313 | None:intergenic | 25.0% |
!!! | ATTTCGTTTTGATGTTTGAA+AGG | - | chr8_1:75560295-75560314 | None:intergenic | 25.0% |
! | TCTTTTCTATGTTCATGTAC+CGG | + | chr8_1:75557873-75557892 | Msa1214780:five_prime_UTR | 30.0% |
!!! | GTTTTGGTTTTTTGTGAAAG+TGG | + | chr8_1:75558055-75558074 | Msa1214780:five_prime_UTR | 30.0% |
GTAACATTGTACTTATTCTG+TGG | + | chr8_1:75558180-75558199 | Msa1214780:five_prime_UTR | 30.0% | |
! | ACAAAGCGGTTTTTATATGT+TGG | - | chr8_1:75558234-75558253 | None:intergenic | 30.0% |
TTGTCATGTAACAAACAAAG+CGG | - | chr8_1:75558248-75558267 | None:intergenic | 30.0% | |
GGAGCAAAAAAATGCAAAAA+AGG | - | chr8_1:75558335-75558354 | None:intergenic | 30.0% | |
!!! | TTGCATTTTTTTGCTCCTTA+AGG | + | chr8_1:75558338-75558357 | Msa1214780:five_prime_UTR | 30.0% |
GAGGTATATAACAGAGAAAA+GGG | - | chr8_1:75558390-75558409 | None:intergenic | 30.0% | |
! | AGAGGTATATAACAGAGAAA+AGG | - | chr8_1:75558391-75558410 | None:intergenic | 30.0% |
GAATAATGAACAAGAAAGAG+AGG | - | chr8_1:75558409-75558428 | None:intergenic | 30.0% | |
TGTGATATTCAGCTTATACT+TGG | + | chr8_1:75558443-75558462 | Msa1214780:five_prime_UTR | 30.0% | |
CAACATGCTATAAGATAAGA+GGG | - | chr8_1:75558751-75558770 | None:intergenic | 30.0% | |
ACAACATGCTATAAGATAAG+AGG | - | chr8_1:75558752-75558771 | None:intergenic | 30.0% | |
TATAGCATGTTGTTGCAATA+AGG | + | chr8_1:75558759-75558778 | Msa1214780:intron | 30.0% | |
ATAGCATGTTGTTGCAATAA+GGG | + | chr8_1:75558760-75558779 | Msa1214780:intron | 30.0% | |
!! | ATTGTGTGAATGACTTTTTC+AGG | + | chr8_1:75559066-75559085 | Msa1214780:intron | 30.0% |
! | TGTTTAAGGTTGTCAAGTTA+GGG | - | chr8_1:75559758-75559777 | None:intergenic | 30.0% |
! | ATGTTTAAGGTTGTCAAGTT+AGG | - | chr8_1:75559759-75559778 | None:intergenic | 30.0% |
AGAGCATGATTCAATGTTTA+AGG | - | chr8_1:75559772-75559791 | None:intergenic | 30.0% | |
ATTGAATCATGCTCTATGAT+TGG | + | chr8_1:75559777-75559796 | Msa1214780:CDS | 30.0% | |
GATACAGATTGAATGTAACT+TGG | - | chr8_1:75559838-75559857 | None:intergenic | 30.0% | |
GTTACATTCAATCTGTATCA+AGG | + | chr8_1:75559839-75559858 | Msa1214780:CDS | 30.0% | |
!! | TGTGTCTTGTTTGCTATATT+CGG | + | chr8_1:75559887-75559906 | Msa1214780:CDS | 30.0% |
!!! | GAATATCACTGATTTTTCTC+TGG | + | chr8_1:75559944-75559963 | Msa1214780:CDS | 30.0% |
CTTAAAAATGTAAGCGAAAG+AGG | + | chr8_1:75560017-75560036 | Msa1214780:CDS | 30.0% | |
ATTTACACTTGTGAAGTGTA+TGG | + | chr8_1:75560322-75560341 | Msa1214780:CDS | 30.0% | |
TTTACACTTGTGAAGTGTAT+GGG | + | chr8_1:75560323-75560342 | Msa1214780:CDS | 30.0% | |
AGATTACATAGTTTCCAAGT+TGG | + | chr8_1:75560592-75560611 | Msa1214780:CDS | 30.0% | |
AACTTGCATCAGTAATATTC+TGG | - | chr8_1:75560664-75560683 | None:intergenic | 30.0% | |
GAATATTACTGATGCAAGTT+TGG | + | chr8_1:75560664-75560683 | Msa1214780:CDS | 30.0% | |
TTTATGGAGATGTGATATTC+TGG | + | chr8_1:75560937-75560956 | Msa1214780:CDS | 30.0% | |
ATTAATAATGAAGCAGCAGA+TGG | + | chr8_1:75561018-75561037 | Msa1214780:three_prime_UTR | 30.0% | |
!! | ACATTCAGCATACTTGTTTT+TGG | + | chr8_1:75561043-75561062 | Msa1214780:three_prime_UTR | 30.0% |
!!! | TTGTTTTTTACAACCCCTTT+TGG | + | chr8_1:75561185-75561204 | Msa1214780:three_prime_UTR | 30.0% |
! | TGTTATATTCTGTTTGTTGC+AGG | + | chr8_1:75561301-75561320 | Msa1214780:three_prime_UTR | 30.0% |
ATATGGTTAACCTCCTTGTA+AGG | + | chr8_1:75557913-75557932 | Msa1214780:five_prime_UTR | 35.0% | |
TTGAATAACCTTGCCTTACA+AGG | - | chr8_1:75557929-75557948 | None:intergenic | 35.0% | |
TTATTCAACAACCTCCTCAA+CGG | + | chr8_1:75557941-75557960 | Msa1214780:five_prime_UTR | 35.0% | |
ACGGCCCAATTTCATAAAAA+AGG | + | chr8_1:75557960-75557979 | Msa1214780:five_prime_UTR | 35.0% | |
!!! | TGCTCCTTAAGGAGTTTTTT+TGG | + | chr8_1:75558349-75558368 | Msa1214780:five_prime_UTR | 35.0% |
GATGCCAAAAAAACTCCTTA+AGG | - | chr8_1:75558356-75558375 | None:intergenic | 35.0% | |
GTAATGATGAATTGCATCCT+GGG | + | chr8_1:75559088-75559107 | Msa1214780:CDS | 35.0% | |
TAATGATGAATTGCATCCTG+GGG | + | chr8_1:75559089-75559108 | Msa1214780:CDS | 35.0% | |
!! | GTCTCTTTGAGATATTCAGA+CGG | + | chr8_1:75559265-75559284 | Msa1214780:CDS | 35.0% |
CTTGGAAAGCTATCTATTAG+AGG | + | chr8_1:75559519-75559538 | Msa1214780:CDS | 35.0% | |
! | TGTGTCTTCTATTGGTGATA+AGG | + | chr8_1:75559629-75559648 | Msa1214780:CDS | 35.0% |
! | GTGTCTTCTATTGGTGATAA+GGG | + | chr8_1:75559630-75559649 | Msa1214780:CDS | 35.0% |
TGCAAAAGGATGTCATATGT+TGG | + | chr8_1:75559665-75559684 | Msa1214780:CDS | 35.0% | |
TATTGCAATCAAACCCTTGT+TGG | - | chr8_1:75559724-75559743 | None:intergenic | 35.0% | |
ATGCTCTATGATTGGAAATG+AGG | + | chr8_1:75559785-75559804 | Msa1214780:CDS | 35.0% | |
TGCTCTATGATTGGAAATGA+GGG | + | chr8_1:75559786-75559805 | Msa1214780:CDS | 35.0% | |
AAGCTTTACCTTTGACAAGT+TGG | - | chr8_1:75559916-75559935 | None:intergenic | 35.0% | |
! | GATTTTTCTCTGGCTGTTAT+TGG | + | chr8_1:75559954-75559973 | Msa1214780:CDS | 35.0% |
TGTTATTGGCCATTATGGAA+AGG | + | chr8_1:75559968-75559987 | Msa1214780:CDS | 35.0% | |
TAACTATTACTTCCTGCCAA+GGG | + | chr8_1:75560087-75560106 | Msa1214780:CDS | 35.0% | |
GGGAATTAAAGACATTGATG+TGG | + | chr8_1:75560343-75560362 | Msa1214780:CDS | 35.0% | |
TTAACCATTCAAAACTGTCC+TGG | + | chr8_1:75560404-75560423 | Msa1214780:CDS | 35.0% | |
ATTCAAAACTGTCCTGGTTT+CGG | + | chr8_1:75560410-75560429 | Msa1214780:CDS | 35.0% | |
AGACATCTAGATCATTCAAC+AGG | - | chr8_1:75560712-75560731 | None:intergenic | 35.0% | |
AGTTTCTCGTGGAGAATTTA+TGG | + | chr8_1:75560921-75560940 | Msa1214780:CDS | 35.0% | |
GCTGAATAAGGAAATGCTAA+TGG | + | chr8_1:75560978-75560997 | Msa1214780:three_prime_UTR | 35.0% | |
TCATGGAACTATAGCCAAAA+GGG | - | chr8_1:75561202-75561221 | None:intergenic | 35.0% | |
AGTGATACAAAGTAAAACCC+AGG | - | chr8_1:75561277-75561296 | None:intergenic | 35.0% | |
! | TGGGTTTTACTTTGTATCAC+TGG | + | chr8_1:75561276-75561295 | Msa1214780:three_prime_UTR | 35.0% |
AATAACCTTGCCTTACAAGG+AGG | - | chr8_1:75557926-75557945 | None:intergenic | 40.0% | |
TTTATGAAATTGGGCCGTTG+AGG | - | chr8_1:75557958-75557977 | None:intergenic | 40.0% | |
! | TGTGAAAGTGGTATTTGCTG+AGG | + | chr8_1:75558067-75558086 | Msa1214780:five_prime_UTR | 40.0% |
AGTTACCACTCTGATTGACA+CGG | - | chr8_1:75558504-75558523 | None:intergenic | 40.0% | |
ATATATCTTGTGGCATGCGT+AGG | + | chr8_1:75558720-75558739 | Msa1214780:intron | 40.0% | |
GGTAATGATGAATTGCATCC+TGG | + | chr8_1:75559087-75559106 | Msa1214780:intron | 40.0% | |
AATGATGAATTGCATCCTGG+GGG | + | chr8_1:75559090-75559109 | Msa1214780:CDS | 40.0% | |
AAGAGCTCCAAAGGTAAATG+GGG | - | chr8_1:75559184-75559203 | None:intergenic | 40.0% | |
GAAGAGCTCCAAAGGTAAAT+GGG | - | chr8_1:75559185-75559204 | None:intergenic | 40.0% | |
TGAAGAGCTCCAAAGGTAAA+TGG | - | chr8_1:75559186-75559205 | None:intergenic | 40.0% | |
ATCTCAAAGAGACATTCGTC+CGG | - | chr8_1:75559258-75559277 | None:intergenic | 40.0% | |
! | AAGCCACCTTTTTGATACAC+AGG | - | chr8_1:75559322-75559341 | None:intergenic | 40.0% |
GTGAAAGTGATCTGAGAGAA+GGG | - | chr8_1:75559602-75559621 | None:intergenic | 40.0% | |
AGTGAAAGTGATCTGAGAGA+AGG | - | chr8_1:75559603-75559622 | None:intergenic | 40.0% | |
CTGTGGAATGTGTCTTCTAT+TGG | + | chr8_1:75559621-75559640 | Msa1214780:CDS | 40.0% | |
GGTCTTTGTGAGATTGCAAA+AGG | + | chr8_1:75559651-75559670 | Msa1214780:CDS | 40.0% | |
GGTTTGATTGCAATAGCAGA+AGG | + | chr8_1:75559729-75559748 | Msa1214780:CDS | 40.0% | |
ATCAAGGATTGTCCTCTTGT+TGG | + | chr8_1:75559855-75559874 | Msa1214780:CDS | 40.0% | |
TCGTTACTGCCTTTCCATAA+TGG | - | chr8_1:75559980-75559999 | None:intergenic | 40.0% | |
!! | GTAACGAATCTGGTTCTAAG+TGG | + | chr8_1:75559993-75560012 | Msa1214780:CDS | 40.0% |
CTAACTATTACTTCCTGCCA+AGG | + | chr8_1:75560086-75560105 | Msa1214780:CDS | 40.0% | |
AACTATTACTTCCTGCCAAG+GGG | + | chr8_1:75560088-75560107 | Msa1214780:CDS | 40.0% | |
ATACAAAGCTACATCTGCGA+AGG | - | chr8_1:75560172-75560191 | None:intergenic | 40.0% | |
!! | TGTAGCTTTGTATCCGACAT+TGG | + | chr8_1:75560179-75560198 | Msa1214780:CDS | 40.0% |
TGTAACAGATTCACCCAATG+TGG | + | chr8_1:75560257-75560276 | Msa1214780:CDS | 40.0% | |
GTAACAGATTCACCCAATGT+GGG | + | chr8_1:75560258-75560277 | Msa1214780:CDS | 40.0% | |
GGCATAGAAAATCCCACATT+GGG | - | chr8_1:75560273-75560292 | None:intergenic | 40.0% | |
AAAGATCGAAGAGACTTGCA+AGG | - | chr8_1:75560386-75560405 | None:intergenic | 40.0% | |
!!! | GAAACCAGGACAGTTTTGAA+TGG | - | chr8_1:75560411-75560430 | None:intergenic | 40.0% |
AGATCAACATGCTGAAGTTG+GGG | - | chr8_1:75560470-75560489 | None:intergenic | 40.0% | |
CAGATCAACATGCTGAAGTT+GGG | - | chr8_1:75560471-75560490 | None:intergenic | 40.0% | |
TCAGATCAACATGCTGAAGT+TGG | - | chr8_1:75560472-75560491 | None:intergenic | 40.0% | |
AATTCTCCAAAAGAGGGAGA+AGG | - | chr8_1:75560523-75560542 | None:intergenic | 40.0% | |
CCTCACAATTCTCCAAAAGA+GGG | - | chr8_1:75560529-75560548 | None:intergenic | 40.0% | |
CTCGAAATACTAAACCTCGA+TGG | + | chr8_1:75560635-75560654 | Msa1214780:CDS | 40.0% | |
TAATATTCTGGCATCCATCG+AGG | - | chr8_1:75560652-75560671 | None:intergenic | 40.0% | |
CAATGCAATTGAGTTTCTCG+TGG | + | chr8_1:75560910-75560929 | Msa1214780:CDS | 40.0% | |
GCTGATATGACTATCAAGTG+TGG | + | chr8_1:75561065-75561084 | Msa1214780:three_prime_UTR | 40.0% | |
GACTATCAAGTGTGGATTTG+CGG | + | chr8_1:75561073-75561092 | Msa1214780:three_prime_UTR | 40.0% | |
!! | GGTTGTTTTCCAAGGAGTTT+TGG | + | chr8_1:75561112-75561131 | Msa1214780:three_prime_UTR | 40.0% |
GGAAACAAACCAAAACTCCT+TGG | - | chr8_1:75561124-75561143 | None:intergenic | 40.0% | |
! | CTTGCAAAAAAGGGCTAGTA+AGG | - | chr8_1:75561145-75561164 | None:intergenic | 40.0% |
CATGGAACTATAGCCAAAAG+GGG | - | chr8_1:75561201-75561220 | None:intergenic | 40.0% | |
CTCATGGAACTATAGCCAAA+AGG | - | chr8_1:75561203-75561222 | None:intergenic | 40.0% | |
ACTCAGTAACTGCATTCTCA+TGG | - | chr8_1:75561219-75561238 | None:intergenic | 40.0% | |
AGAATGCAGTTACTGAGTCT+TGG | + | chr8_1:75561221-75561240 | Msa1214780:three_prime_UTR | 40.0% | |
AGTTACTGAGTCTTGGTTGA+TGG | + | chr8_1:75561228-75561247 | Msa1214780:three_prime_UTR | 40.0% | |
GTTAACCTCCTTGTAAGGCA+AGG | + | chr8_1:75557918-75557937 | Msa1214780:five_prime_UTR | 45.0% | |
! | GAAAGTGGTATTTGCTGAGG+TGG | + | chr8_1:75558070-75558089 | Msa1214780:five_prime_UTR | 45.0% |
AGAGCAGTGCACATCAACAT+TGG | - | chr8_1:75559136-75559155 | None:intergenic | 45.0% | |
!! | CTGATTCTAGTTCGCTTCGT+AGG | - | chr8_1:75559159-75559178 | None:intergenic | 45.0% |
ATCAGTGCCCCATTTACCTT+TGG | + | chr8_1:75559174-75559193 | Msa1214780:CDS | 45.0% | |
ATATTCAGACGGCTTCCAAG+TGG | + | chr8_1:75559276-75559295 | Msa1214780:CDS | 45.0% | |
CAGGTGCCTGTGTATCAAAA+AGG | + | chr8_1:75559313-75559332 | Msa1214780:CDS | 45.0% | |
GTGCCTGTGTATCAAAAAGG+TGG | + | chr8_1:75559316-75559335 | Msa1214780:CDS | 45.0% | |
GAGAGTGATGAAGATGCTGA+AGG | + | chr8_1:75559405-75559424 | Msa1214780:CDS | 45.0% | |
GATGAAGATGCTGAAGGTGA+TGG | + | chr8_1:75559411-75559430 | Msa1214780:CDS | 45.0% | |
! | AAGGTGATGGCTACCTTACA+AGG | + | chr8_1:75559424-75559443 | Msa1214780:CDS | 45.0% |
! | TACCTTACAAGGCGTTTGGA+AGG | + | chr8_1:75559435-75559454 | Msa1214780:CDS | 45.0% |
! | ACCTTACAAGGCGTTTGGAA+GGG | + | chr8_1:75559436-75559455 | Msa1214780:CDS | 45.0% |
ATAGCTTTCCAAGTCCACCA+CGG | - | chr8_1:75559512-75559531 | None:intergenic | 45.0% | |
CTCTCAGATCACTTTCACTG+TGG | + | chr8_1:75559604-75559623 | Msa1214780:CDS | 45.0% | |
!! | TGTTGGTGATCGACGAAGAA+TGG | - | chr8_1:75559707-75559726 | None:intergenic | 45.0% |
TTCTTCGTCGATCACCAACA+AGG | + | chr8_1:75559707-75559726 | Msa1214780:CDS | 45.0% | |
TCTTCGTCGATCACCAACAA+GGG | + | chr8_1:75559708-75559727 | Msa1214780:CDS | 45.0% | |
TGTCCTCTTGTTGGAGATCA+TGG | + | chr8_1:75559864-75559883 | Msa1214780:CDS | 45.0% | |
ACACCATGATCTCCAACAAG+AGG | - | chr8_1:75559870-75559889 | None:intergenic | 45.0% | |
TTCGGCTTCCAACTTGTCAA+AGG | + | chr8_1:75559905-75559924 | Msa1214780:CDS | 45.0% | |
CTGGCTGTTATTGGCCATTA+TGG | + | chr8_1:75559963-75559982 | Msa1214780:CDS | 45.0% | |
TGGAAAGGCAGTAACGAATC+TGG | + | chr8_1:75559983-75560002 | Msa1214780:CDS | 45.0% | |
! | GAAAGAGGGTTTTGCGTCAT+GGG | + | chr8_1:75560032-75560051 | Msa1214780:CDS | 45.0% |
CTTTGTATCCGACATTGGAC+TGG | + | chr8_1:75560184-75560203 | Msa1214780:CDS | 45.0% | |
AAATGCTGCCAGTCCAATGT+CGG | - | chr8_1:75560195-75560214 | None:intergenic | 45.0% | |
CTGGAGAGATCTTGTGCATT+TGG | - | chr8_1:75560219-75560238 | None:intergenic | 45.0% | |
GGGCATAGAAAATCCCACAT+TGG | - | chr8_1:75560274-75560293 | None:intergenic | 45.0% | |
CTTCAGCATGTTGATCTGAC+TGG | + | chr8_1:75560473-75560492 | Msa1214780:CDS | 45.0% | |
GTTGATCTGACTGGACTTTG+TGG | + | chr8_1:75560482-75560501 | Msa1214780:CDS | 45.0% | |
!! | CCCTCTTTTGGAGAATTGTG+AGG | + | chr8_1:75560526-75560545 | Msa1214780:CDS | 45.0% |
GCCTCACAATTCTCCAAAAG+AGG | - | chr8_1:75560530-75560549 | None:intergenic | 45.0% | |
!! | CTTTTGGAGAATTGTGAGGC+TGG | + | chr8_1:75560530-75560549 | Msa1214780:CDS | 45.0% |
! | ACATAGTTTCCAAGTTGGCC+AGG | + | chr8_1:75560597-75560616 | Msa1214780:CDS | 45.0% |
AAGTGTGCAATCACTGATGC+AGG | + | chr8_1:75560734-75560753 | Msa1214780:CDS | 45.0% | |
ATGATCAGCACGAGAGAGAA+CGG | - | chr8_1:75560765-75560784 | None:intergenic | 45.0% | |
CTCTCTATGTCTGACTGTTC+AGG | + | chr8_1:75560800-75560819 | Msa1214780:CDS | 45.0% | |
GTGCCTTTCCTGGTGAAATT+AGG | + | chr8_1:75560839-75560858 | Msa1214780:CDS | 45.0% | |
TGGCCTAATTTCACCAGGAA+AGG | - | chr8_1:75560845-75560864 | None:intergenic | 45.0% | |
TTTCCTGGTGAAATTAGGCC+AGG | + | chr8_1:75560844-75560863 | Msa1214780:CDS | 45.0% | |
ATATTCTGGCCTAATCGCGA+TGG | + | chr8_1:75560951-75560970 | Msa1214780:exon | 45.0% | |
!!! | GTTGACTCGGTTGTTTTCCA+AGG | + | chr8_1:75561104-75561123 | Msa1214780:three_prime_UTR | 45.0% |
!!! | AGTTAATTTTTTTTTTTTTT+TGG | + | chr8_1:75558850-75558869 | Msa1214780:intron | 5.0% |
ATGAAATTGGGCCGTTGAGG+AGG | - | chr8_1:75557955-75557974 | None:intergenic | 50.0% | |
! | GTGGTATTTGCTGAGGTGGT+TGG | + | chr8_1:75558074-75558093 | Msa1214780:five_prime_UTR | 50.0% |
! | CTGTTTCTTGTGCTCATGCC+TGG | + | chr8_1:75558478-75558497 | Msa1214780:exon | 50.0% |
ATGAATTGCATCCTGGGGGT+AGG | + | chr8_1:75559094-75559113 | Msa1214780:CDS | 50.0% | |
TGAATTGCATCCTGGGGGTA+GGG | + | chr8_1:75559095-75559114 | Msa1214780:CDS | 50.0% | |
GCCTACCATTGAGATCCTTC+CGG | + | chr8_1:75559236-75559255 | Msa1214780:CDS | 50.0% | |
TCCGGAAGGATCTCAATGGT+AGG | - | chr8_1:75559240-75559259 | None:intergenic | 50.0% | |
TTCGTCCGGAAGGATCTCAA+TGG | - | chr8_1:75559244-75559263 | None:intergenic | 50.0% | |
CAAAGAGACATTCGTCCGGA+AGG | - | chr8_1:75559254-75559273 | None:intergenic | 50.0% | |
GAGCTTCTCTCTTTGCCACT+TGG | - | chr8_1:75559294-75559313 | None:intergenic | 50.0% | |
AGTGGCAAAGAGAGAAGCTC+AGG | + | chr8_1:75559294-75559313 | Msa1214780:CDS | 50.0% | |
! | TGGCTACCTTACAAGGCGTT+TGG | + | chr8_1:75559431-75559450 | Msa1214780:CDS | 50.0% |
TCCCTTCCAAACGCCTTGTA+AGG | - | chr8_1:75559440-75559459 | None:intergenic | 50.0% | |
! | TTACAAGGCGTTTGGAAGGG+AGG | + | chr8_1:75559439-75559458 | Msa1214780:CDS | 50.0% |
GGAGGAAAGCCACTGATGTA+AGG | + | chr8_1:75559457-75559476 | Msa1214780:CDS | 50.0% | |
AGCAGCAAGCCTTACATCAG+TGG | - | chr8_1:75559469-75559488 | None:intergenic | 50.0% | |
!! | AGGCTTGCTGCTATTGCTGT+TGG | + | chr8_1:75559477-75559496 | Msa1214780:CDS | 50.0% |
!! | GGCTTGCTGCTATTGCTGTT+GGG | + | chr8_1:75559478-75559497 | Msa1214780:CDS | 50.0% |
! | AGAGGAAACAACTCGACTCG+AGG | + | chr8_1:75559537-75559556 | Msa1214780:CDS | 50.0% |
! | CGAAAGAGGGTTTTGCGTCA+TGG | + | chr8_1:75560031-75560050 | Msa1214780:CDS | 50.0% |
! | AGCATCGAAGCCATGGGTAA+AGG | + | chr8_1:75560122-75560141 | Msa1214780:CDS | 50.0% |
GTGTGGGAAACCTTTACCCA+TGG | - | chr8_1:75560135-75560154 | None:intergenic | 50.0% | |
ATCTCTCCAGAGCTTGCAGT+TGG | + | chr8_1:75560229-75560248 | Msa1214780:CDS | 50.0% | |
ACTCTTCCAACTGCAAGCTC+TGG | - | chr8_1:75560238-75560257 | None:intergenic | 50.0% | |
CTTTGTGGCATAACTGACGC+TGG | + | chr8_1:75560497-75560516 | Msa1214780:CDS | 50.0% | |
TTGTGAGGCTGGACTTGTCA+AGG | + | chr8_1:75560541-75560560 | Msa1214780:CDS | 50.0% | |
CTTGTCAAGGTGAACCTTGC+AGG | + | chr8_1:75560554-75560573 | Msa1214780:CDS | 50.0% | |
TCAAGTTCCAGCAACCTGCA+AGG | - | chr8_1:75560571-75560590 | None:intergenic | 50.0% | |
GAACAAGTGTGTGCCTTTCC+TGG | + | chr8_1:75560829-75560848 | Msa1214780:CDS | 50.0% | |
! | GAAATTAGGCCAGGCGTTGT+CGG | + | chr8_1:75560853-75560872 | Msa1214780:CDS | 50.0% |
! | AAATTAGGCCAGGCGTTGTC+GGG | + | chr8_1:75560854-75560873 | Msa1214780:CDS | 50.0% |
TCAGCAGTTCCATCGCGATT+AGG | - | chr8_1:75560963-75560982 | None:intergenic | 50.0% | |
CGCGATGGAACTGCTGAATA+AGG | + | chr8_1:75560966-75560985 | Msa1214780:three_prime_UTR | 50.0% | |
AGGCAATGTGCGATCTAGAG+TGG | - | chr8_1:75561257-75561276 | None:intergenic | 50.0% | |
ACTCTAGATCGCACATTGCC+TGG | + | chr8_1:75561256-75561275 | Msa1214780:three_prime_UTR | 50.0% | |
CTCTAGATCGCACATTGCCT+GGG | + | chr8_1:75561257-75561276 | Msa1214780:three_prime_UTR | 50.0% | |
ATAGTGTACACCCTACCCCC+AGG | - | chr8_1:75559108-75559127 | None:intergenic | 55.0% | |
AGCTCGCTGAAGAGCTCCAA+AGG | - | chr8_1:75559193-75559212 | None:intergenic | 55.0% | |
CTTCAGCGAGCTCTTGAGCA+CGG | + | chr8_1:75559201-75559220 | Msa1214780:CDS | 55.0% | |
TTCAGCGAGCTCTTGAGCAC+GGG | + | chr8_1:75559202-75559221 | Msa1214780:CDS | 55.0% | |
! | GCTGCTATTGCTGTTGGGAC+TGG | + | chr8_1:75559483-75559502 | Msa1214780:CDS | 55.0% |
! | ACTCGAGGTGTTACAGACCG+CGG | + | chr8_1:75559552-75559571 | Msa1214780:CDS | 55.0% |
GGTCTCTCAGCAGTTGCTCA+TGG | + | chr8_1:75559573-75559592 | Msa1214780:CDS | 55.0% | |
TGCGTCATGGGAGTTGCTCA+AGG | + | chr8_1:75560044-75560063 | Msa1214780:CDS | 55.0% | |
CATGGCTTCGATGCTCGCAT+CGG | - | chr8_1:75560117-75560136 | None:intergenic | 55.0% | |
!! | GATGCGAGCATCGAAGCCAT+GGG | + | chr8_1:75560116-75560135 | Msa1214780:CDS | 55.0% |
GGCACATCTGCTTCAGGTGT+GGG | - | chr8_1:75560151-75560170 | None:intergenic | 55.0% | |
AGGCACATCTGCTTCAGGTG+TGG | - | chr8_1:75560152-75560171 | None:intergenic | 55.0% | |
! | TGCGAAGGCACATCTGCTTC+AGG | - | chr8_1:75560157-75560176 | None:intergenic | 55.0% |
ATGCTAGCACTGCCGAAACC+AGG | - | chr8_1:75560425-75560444 | None:intergenic | 55.0% | |
TGGTTTCGGCAGTGCTAGCA+TGG | + | chr8_1:75560424-75560443 | Msa1214780:CDS | 55.0% | |
AGTGCTAGCATGGCTGTGGT+TGG | + | chr8_1:75560434-75560453 | Msa1214780:CDS | 55.0% | |
GTGCTAGCATGGCTGTGGTT+GGG | + | chr8_1:75560435-75560454 | Msa1214780:CDS | 55.0% | |
AGGTGAACCTTGCAGGTTGC+TGG | + | chr8_1:75560561-75560580 | Msa1214780:CDS | 55.0% | |
! | TCCAAGTTGGCCAGGCTACA+TGG | + | chr8_1:75560605-75560624 | Msa1214780:CDS | 55.0% |
ACCATGTAGCCTGGCCAACT+TGG | - | chr8_1:75560609-75560628 | None:intergenic | 55.0% | |
AAGTTGGCCAGGCTACATGG+TGG | + | chr8_1:75560608-75560627 | Msa1214780:CDS | 55.0% | |
GAGAGTTCCACCATGTAGCC+TGG | - | chr8_1:75560618-75560637 | None:intergenic | 55.0% | |
ACGCCTGGCCTAATTTCACC+AGG | - | chr8_1:75560850-75560869 | None:intergenic | 55.0% | |
TATTCAAGCCCGACAACGCC+TGG | - | chr8_1:75560865-75560884 | None:intergenic | 55.0% | |
TCAAGTGTGGATTTGCGGCG+CGG | + | chr8_1:75561078-75561097 | Msa1214780:three_prime_UTR | 55.0% | |
CCACTCTGATTGACACGGCC+AGG | - | chr8_1:75558499-75558518 | None:intergenic | 60.0% | |
CCTGGCCGTGTCAATCAGAG+TGG | + | chr8_1:75558496-75558515 | Msa1214780:CDS | 60.0% | |
!! | ACTGGTTGCCGTGGTGGACT+TGG | + | chr8_1:75559501-75559520 | Msa1214780:CDS | 60.0% |
GAGCAACTGCTGAGAGACCG+CGG | - | chr8_1:75559572-75559591 | None:intergenic | 60.0% | |
!! | TGCTCGCATCGGTTACCCCT+TGG | - | chr8_1:75560106-75560125 | None:intergenic | 60.0% |
!! | CGATGCGAGCATCGAAGCCA+TGG | + | chr8_1:75560115-75560134 | Msa1214780:CDS | 60.0% |
!!! | CGCTGGCCTTCTCCCTCTTT+TGG | + | chr8_1:75560514-75560533 | Msa1214780:CDS | 60.0% |
!! | TGCGGCGCGGTTTGTTGACT+CGG | + | chr8_1:75561091-75561110 | Msa1214780:three_prime_UTR | 60.0% |
!! | GCTGTTGGGACTGGTTGCCG+TGG | + | chr8_1:75559492-75559511 | Msa1214780:CDS | 65.0% |
!! | GTTGGGACTGGTTGCCGTGG+TGG | + | chr8_1:75559495-75559514 | Msa1214780:CDS | 65.0% |
!! | CGCATCGGTTACCCCTTGGC+AGG | - | chr8_1:75560102-75560121 | None:intergenic | 65.0% |
CGGCAGTGCTAGCATGGCTG+TGG | + | chr8_1:75560430-75560449 | Msa1214780:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 75557844 | 75561405 | 75557844 | ID=Msa1214780;Name=Msa1214780 |
chr8_1 | mRNA | 75557844 | 75561405 | 75557844 | ID=Msa1214780-mRNA-1;Parent=Msa1214780;Name=Msa1214780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=649|1|1|1|0|0.5|2|441|633 |
chr8_1 | exon | 75557844 | 75558517 | 75557844 | ID=Msa1214780-mRNA-1:exon:25938;Parent=Msa1214780-mRNA-1 |
chr8_1 | exon | 75559088 | 75561405 | 75559088 | ID=Msa1214780-mRNA-1:exon:25939;Parent=Msa1214780-mRNA-1 |
chr8_1 | five_prime_UTR | 75557844 | 75558492 | 75557844 | ID=Msa1214780-mRNA-1:five_prime_utr;Parent=Msa1214780-mRNA-1 |
chr8_1 | CDS | 75558493 | 75558517 | 75558493 | ID=Msa1214780-mRNA-1:cds;Parent=Msa1214780-mRNA-1 |
chr8_1 | CDS | 75559088 | 75560964 | 75559088 | ID=Msa1214780-mRNA-1:cds;Parent=Msa1214780-mRNA-1 |
chr8_1 | three_prime_UTR | 75560965 | 75561405 | 75560965 | ID=Msa1214780-mRNA-1:three_prime_utr;Parent=Msa1214780-mRNA-1 |
Gene Sequence |
Protein sequence |