Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521620 | XP_013461948.1 | 91.295 | 471 | 11 | 2 | 1 | 442 | 1 | 470 | 0.0 | 809 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521620 | sp|Q8L7A0|TAUE3_ARATH | 69.574 | 470 | 104 | 5 | 6 | 441 | 11 | 475 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521620 | G7ZWM6 | 91.295 | 471 | 11 | 2 | 1 | 442 | 1 | 470 | 0.0 | 809 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140510 | Msa0521620 | -0.811240 | 7.728595e-51 | -8.615850e-47 |
| Msa0175050 | Msa0521620 | 0.803490 | 3.401012e-49 | -8.615850e-47 |
| Msa0180990 | Msa0521620 | -0.804187 | 2.436279e-49 | -8.615850e-47 |
| Msa0183010 | Msa0521620 | -0.856113 | 4.005585e-62 | -8.615850e-47 |
| Msa0230640 | Msa0521620 | -0.856218 | 3.732848e-62 | -8.615850e-47 |
| Msa0381600 | Msa0521620 | -0.814570 | 1.440321e-51 | -8.615850e-47 |
| Msa0387280 | Msa0521620 | 0.822059 | 2.900670e-53 | -8.615850e-47 |
| Msa0392040 | Msa0521620 | -0.822757 | 1.997253e-53 | -8.615850e-47 |
| Msa0457510 | Msa0521620 | 0.800876 | 1.173203e-48 | -8.615850e-47 |
| Msa0469940 | Msa0521620 | -0.808949 | 2.408334e-50 | -8.615850e-47 |
| Msa0279210 | Msa0521620 | -0.820782 | 5.718756e-53 | -8.615850e-47 |
| Msa0279250 | Msa0521620 | -0.802748 | 4.842984e-49 | -8.615850e-47 |
| Msa0318970 | Msa0521620 | -0.817011 | 4.113788e-52 | -8.615850e-47 |
| Msa0521620 | Msa0521740 | 0.832794 | 7.711359e-56 | -8.615850e-47 |
| Msa0521620 | Msa0532810 | -0.801263 | 9.779653e-49 | -8.615850e-47 |
| Msa0521620 | Msa0613460 | 0.811481 | 6.853510e-51 | -8.615850e-47 |
| Msa0521620 | Msa0743120 | -0.816487 | 5.391923e-52 | -8.615850e-47 |
| Msa0521620 | Msa0818110 | 0.802842 | 4.629639e-49 | -8.615850e-47 |
| Msa0521620 | Msa0862800 | -0.845269 | 4.511051e-59 | -8.615850e-47 |
| Msa0521620 | Msa0864470 | -0.819833 | 9.436143e-53 | -8.615850e-47 |
| Msa0521620 | Msa0881210 | -0.807424 | 5.089294e-50 | -8.615850e-47 |
| Msa0521620 | Msa0942550 | -0.818594 | 1.806726e-52 | -8.615850e-47 |
| Msa0521620 | Msa1029080 | -0.815536 | 8.791052e-52 | -8.615850e-47 |
| Msa0521620 | Msa1131670 | -0.814320 | 1.636387e-51 | -8.615850e-47 |
| Msa0521620 | Msa1144720 | -0.820024 | 8.535228e-53 | -8.615850e-47 |
| Msa0521620 | Msa1156170 | -0.810049 | 1.398461e-50 | -8.615850e-47 |
| Msa0521620 | Msa1171730 | 0.817350 | 3.450693e-52 | -8.615850e-47 |
| Msa0521620 | Msa1177780 | 0.824313 | 8.635344e-54 | -8.615850e-47 |
| Msa0521620 | Msa1208650 | -0.839929 | 1.180531e-57 | -8.615850e-47 |
| Msa0521620 | Msa1217770 | -0.801057 | 1.077249e-48 | -8.615850e-47 |
| Msa0521620 | Msa1222280 | 0.801449 | 8.956792e-49 | -8.615850e-47 |
| Msa0521620 | Msa1224580 | -0.840694 | 7.452828e-58 | -8.615850e-47 |
| Msa0521620 | Msa1228160 | -0.800090 | 1.696336e-48 | -8.615850e-47 |
| Msa0521620 | Msa1257800 | -0.806280 | 8.879669e-50 | -8.615850e-47 |
| Msa0521620 | Msa1262990 | -0.812411 | 4.297335e-51 | -8.615850e-47 |
| Msa0521620 | Msa1264860 | -0.804466 | 2.131805e-49 | -8.615850e-47 |
| Msa0521620 | Msa1317480 | -0.808365 | 3.210435e-50 | -8.615850e-47 |
| Msa0521620 | Msa1352540 | -0.803858 | 2.851548e-49 | -8.615850e-47 |
| Msa0521620 | Msa1381540 | 0.981404 | 1.656992e-152 | -8.615850e-47 |
| Msa0521620 | Msa1387590 | 0.992866 | 6.106512e-196 | -8.615850e-47 |
| Msa0521620 | Msa1404240 | -0.804749 | 1.860469e-49 | -8.615850e-47 |
| Msa0521620 | Msa1417810 | -0.801025 | 1.093981e-48 | -8.615850e-47 |
| Msa0521620 | Msa1420270 | 0.803805 | 2.925495e-49 | -8.615850e-47 |
| Msa0521620 | Msa1445400 | -0.805186 | 1.507468e-49 | -8.615850e-47 |
| Msa0521620 | Msa1451620 | -0.819843 | 9.384400e-53 | -8.615850e-47 |
| Msa0521620 | Msa1463650 | -0.803251 | 3.810414e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521620 | MtrunA17_Chr3g0139541 | 91.295 | 471 | 11 | 2 | 1 | 442 | 1 | 470 | 0.0 | 809 |
| Msa0521620 | MtrunA17_Chr5g0403901 | 59.695 | 459 | 146 | 5 | 11 | 438 | 18 | 468 | 1.56e-166 | 476 |
| Msa0521620 | MtrunA17_Chr8g0373471 | 59.770 | 435 | 141 | 3 | 41 | 442 | 36 | 469 | 3.41e-164 | 471 |
| Msa0521620 | MtrunA17_Chr8g0380211 | 59.709 | 412 | 129 | 2 | 67 | 441 | 67 | 478 | 4.64e-145 | 422 |
| Msa0521620 | MtrunA17_Chr1g0157751 | 50.318 | 471 | 180 | 4 | 6 | 438 | 1 | 455 | 3.79e-144 | 419 |
| Msa0521620 | MtrunA17_Chr8g0380191 | 61.465 | 314 | 114 | 2 | 127 | 440 | 10 | 316 | 1.16e-120 | 354 |
| Msa0521620 | MtrunA17_Chr7g0265481 | 49.539 | 434 | 176 | 5 | 44 | 438 | 30 | 459 | 2.66e-118 | 353 |
| Msa0521620 | MtrunA17_Chr1g0179621 | 49.157 | 415 | 171 | 4 | 64 | 438 | 48 | 462 | 4.43e-111 | 335 |
| Msa0521620 | MtrunA17_Chr3g0139621 | 72.269 | 119 | 11 | 1 | 273 | 369 | 27 | 145 | 2.00e-39 | 139 |
| Msa0521620 | MtrunA17_Chr2g0280401 | 26.753 | 385 | 226 | 6 | 105 | 438 | 87 | 466 | 8.04e-37 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521620 | AT2G25737.1 | 69.574 | 470 | 104 | 5 | 6 | 441 | 11 | 475 | 0.0 | 589 |
| Msa0521620 | AT2G25737.2 | 65.027 | 366 | 89 | 5 | 6 | 337 | 11 | 371 | 8.09e-145 | 418 |
| Msa0521620 | AT2G36630.1 | 47.229 | 415 | 181 | 6 | 62 | 438 | 42 | 456 | 1.07e-108 | 329 |
| Msa0521620 | AT1G11540.2 | 32.172 | 373 | 214 | 8 | 104 | 438 | 79 | 450 | 2.96e-39 | 147 |
| Msa0521620 | AT1G11540.1 | 32.337 | 368 | 210 | 8 | 109 | 438 | 1 | 367 | 3.46e-39 | 145 |
| Msa0521620 | AT1G61740.1 | 28.293 | 410 | 249 | 6 | 72 | 438 | 51 | 458 | 1.76e-35 | 137 |
| Msa0521620 | AT4G21250.1 | 29.557 | 406 | 239 | 5 | 73 | 438 | 51 | 449 | 5.60e-31 | 124 |
| Msa0521620 | AT4G21260.1 | 26.157 | 432 | 243 | 13 | 6 | 419 | 1 | 374 | 1.23e-29 | 119 |
Find 143 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGCTGTTGATTTCTTA+TGG | 0.163433 | 3_4:+74541963 | Msa0521620:CDS |
| CCTATGCTCAGTCTTATTAT+TGG | 0.208963 | 3_4:+74542340 | Msa0521620:CDS |
| TCAACAAAAGCATTCTTAAA+AGG | 0.210652 | 3_4:+74543773 | Msa0521620:CDS |
| GATTGCCGATCATGAATATA+TGG | 0.212904 | 3_4:+74545425 | Msa0521620:CDS |
| AATAAAAGAACACAATAATT+TGG | 0.213975 | 3_4:-74541497 | None:intergenic |
| CTACTTGCTGAAACGATTTC+CGG | 0.245240 | 3_4:+74545115 | Msa0521620:CDS |
| GAGATAGCAGTCGATGATTT+AGG | 0.245570 | 3_4:-74542370 | None:intergenic |
| TATATAACAAGCTAAATTAT+TGG | 0.256353 | 3_4:-74545761 | None:intergenic |
| CACATGCATCTTAATCTAAA+TGG | 0.262348 | 3_4:-74545678 | None:intergenic |
| CGGTATAATCGGTGGATTGC+TGG | 0.273239 | 3_4:+74544870 | Msa0521620:CDS |
| TGAAAATGAGATCCATATTA+TGG | 0.284097 | 3_4:+74541816 | Msa0521620:CDS |
| TGGAGTTGGCATTTCAAATA+TGG | 0.298396 | 3_4:+74545395 | Msa0521620:CDS |
| TAAGGAAACCATAATGAAAA+AGG | 0.303076 | 3_4:+74543811 | Msa0521620:CDS |
| AGAAGGCTGATCATCCTATT+TGG | 0.303986 | 3_4:+74545309 | Msa0521620:CDS |
| TAGCAACATCATCCATAATA+TGG | 0.305835 | 3_4:-74541828 | None:intergenic |
| ACTAGGAGGCGGATTTGTTA+TGG | 0.306710 | 3_4:+74544894 | Msa0521620:CDS |
| GTATTAGTAACATTAAAATT+TGG | 0.315047 | 3_4:-74541908 | None:intergenic |
| AAACGATTTCCGGTTCCTTA+TGG | 0.322506 | 3_4:+74545125 | Msa0521620:CDS |
| TTGGGTACTGAACTTGTTAC+AGG | 0.324749 | 3_4:+74544558 | Msa0521620:CDS |
| ATGTTGCAGGAAATGGAATT+TGG | 0.334185 | 3_4:+74542229 | Msa0521620:intron |
| TTTATCAGTGCAATCTCATT+AGG | 0.334595 | 3_4:+74545372 | Msa0521620:CDS |
| CTACATGTTCTGCAGCATAT+TGG | 0.346236 | 3_4:+74544539 | Msa0521620:CDS |
| TACATGTTCTGCAGCATATT+GGG | 0.353310 | 3_4:+74544540 | Msa0521620:CDS |
| TCAACGTTGTATTTCCTGAT+TGG | 0.361915 | 3_4:+74543613 | Msa0521620:CDS |
| AGGGCTTGAGACATGGAATA+AGG | 0.370713 | 3_4:+74543793 | Msa0521620:CDS |
| GCAGTTACCCCAACTGCAAT+TGG | 0.371672 | 3_4:-74544733 | None:intergenic |
| TTATTTCTTATCCTGATAGA+AGG | 0.371902 | 3_4:+74545573 | Msa0521620:three_prime_UTR |
| CTAGTCATCTATTGTGTGTT+TGG | 0.378183 | 3_4:+74544838 | Msa0521620:CDS |
| GTTTGGTGAAGAAGAAAATT+CGG | 0.390433 | 3_4:-74541697 | None:intergenic |
| GGTGGCTACTATTGCAGCCT+TGG | 0.391624 | 3_4:+74545269 | Msa0521620:CDS |
| CTCATCATCTTTATTCTAGC+TGG | 0.396070 | 3_4:+74545342 | Msa0521620:CDS |
| ATAGCATGAGGGAGGTTTAC+CGG | 0.404366 | 3_4:+74545844 | Msa0521620:three_prime_UTR |
| ATGAAAATTTGACAATAATC+CGG | 0.404677 | 3_4:+74545727 | Msa0521620:three_prime_UTR |
| CTATTGTGTGTTTGGTGTGC+TGG | 0.405285 | 3_4:+74544846 | Msa0521620:CDS |
| CTAGGAGGCGGATTTGTTAT+GGG | 0.410693 | 3_4:+74544895 | Msa0521620:CDS |
| ACCATTTGATTCTTGTCTCC+TGG | 0.412224 | 3_4:-74543999 | None:intergenic |
| GAATATAAAGCTCTTCCAAC+TGG | 0.413552 | 3_4:+74544122 | Msa0521620:CDS |
| AATATAGTGACAAGCCAATC+AGG | 0.423808 | 3_4:-74543627 | None:intergenic |
| TGGATGATGTTGCTATTGTT+TGG | 0.424677 | 3_4:+74541836 | Msa0521620:CDS |
| TGCAGATCCCAATTGCAGTT+GGG | 0.427147 | 3_4:+74544725 | Msa0521620:intron |
| GCCAACTTAGCTCTTGGCCT+CGG | 0.430451 | 3_4:-74545541 | None:intergenic |
| TGAGAGATGCTCTTCCAAAT+AGG | 0.430670 | 3_4:-74545323 | None:intergenic |
| TCCACAGAAAATAAAGGAGC+AGG | 0.431843 | 3_4:-74541630 | None:intergenic |
| ACCAAGACTCGTGTTCTGTT+TGG | 0.434467 | 3_4:-74541714 | None:intergenic |
| GTTGGAGGTGTAGGTGGTGG+TGG | 0.435918 | 3_4:+74542307 | Msa0521620:CDS |
| GGTGTGCTGGCCGGTATAAT+CGG | 0.438441 | 3_4:+74544859 | Msa0521620:CDS |
| CAACAAAAGCATTCTTAAAA+GGG | 0.441289 | 3_4:+74543774 | Msa0521620:CDS |
| GCTACTATTGCAGCCTTGGT+TGG | 0.446086 | 3_4:+74545273 | Msa0521620:CDS |
| CTTCACGACGTTGGCGTGAA+GGG | 0.452707 | 3_4:-74541594 | None:intergenic |
| TGCATAAGTAGCCGAGTAAA+CGG | 0.452785 | 3_4:+74541405 | Msa0521620:five_prime_UTR |
| GCTAAATCATAGTCAATGAT+TGG | 0.453065 | 3_4:-74543540 | None:intergenic |
| GTTTGTTTCAGGTATGATCA+TGG | 0.467366 | 3_4:+74543458 | Msa0521620:intron |
| AAATGAAAATTGAGATTGAA+AGG | 0.468829 | 3_4:-74541543 | None:intergenic |
| ATTATTGGCAATGTACAAAC+CGG | 0.472551 | 3_4:-74545746 | None:intergenic |
| TAATTTGGTTTGCAAAATGA+AGG | 0.474766 | 3_4:-74541482 | None:intergenic |
| ACCAAACAGAACACGAGTCT+TGG | 0.476954 | 3_4:+74541713 | Msa0521620:five_prime_UTR |
| CACAGCTCTTTACTTGAGCC+TGG | 0.479609 | 3_4:+74545248 | Msa0521620:intron |
| GGAAGTGTTGGAGGTGTAGG+TGG | 0.480918 | 3_4:+74542301 | Msa0521620:CDS |
| TTTGGAAGTGTTGGAGGTGT+AGG | 0.483068 | 3_4:+74542298 | Msa0521620:CDS |
| TTATGGAAATCAGATGGATC+GGG | 0.484509 | 3_4:+74541980 | Msa0521620:CDS |
| ATTCATTCTAGGAGGCTGCC+AGG | 0.485158 | 3_4:+74543981 | Msa0521620:intron |
| GAGGCAACTGCATTGTTCAC+AGG | 0.489298 | 3_4:+74544760 | Msa0521620:CDS |
| TATTCAGAGTTCCGTTTACT+CGG | 0.493138 | 3_4:-74541416 | None:intergenic |
| ACCGAGGCCAAGAGCTAAGT+TGG | 0.495274 | 3_4:+74545540 | Msa0521620:three_prime_UTR |
| ATCACGGCCAACTTAGCTCT+TGG | 0.504666 | 3_4:-74545547 | None:intergenic |
| TCTTCACGACGTTGGCGTGA+AGG | 0.504828 | 3_4:-74541595 | None:intergenic |
| CTTATGGAAATCAGATGGAT+CGG | 0.504898 | 3_4:+74541979 | Msa0521620:CDS |
| GGTATAATCGGTGGATTGCT+GGG | 0.505907 | 3_4:+74544871 | Msa0521620:CDS |
| AGTGTTGGAGGTGTAGGTGG+TGG | 0.506773 | 3_4:+74542304 | Msa0521620:CDS |
| ACCAAATGTTGCCATTGAAA+AGG | 0.507227 | 3_4:+74544145 | Msa0521620:CDS |
| ATAGCTTCTACTGGTGATCA+AGG | 0.508677 | 3_4:+74544793 | Msa0521620:CDS |
| CTCATGCTTGGTATCAGCAT+TGG | 0.509084 | 3_4:+74543582 | Msa0521620:CDS |
| GATTTCTTATGGAAATCAGA+TGG | 0.512178 | 3_4:+74541974 | Msa0521620:CDS |
| CAGTTACCCCAACTGCAATT+GGG | 0.512495 | 3_4:-74544732 | None:intergenic |
| ATTGCCGATCATGAATATAT+GGG | 0.513117 | 3_4:+74545426 | Msa0521620:CDS |
| ATGCAGATCCCAATTGCAGT+TGG | 0.515311 | 3_4:+74544724 | Msa0521620:intron |
| GGAGCTGCGTTTGGAAGTGT+TGG | 0.516172 | 3_4:+74542289 | Msa0521620:CDS |
| GCAATCTCATTAGGTGGAGT+TGG | 0.517080 | 3_4:+74545381 | Msa0521620:CDS |
| ACGGGAGGGAGAACATTGTA+TGG | 0.519337 | 3_4:+74545797 | Msa0521620:three_prime_UTR |
| ATGGCAACATTTGGTCCAGT+TGG | 0.520257 | 3_4:-74544137 | None:intergenic |
| TTTGGTTGGCAAATTGTGTT+GGG | 0.522022 | 3_4:+74542247 | Msa0521620:CDS |
| ATTTGGTTGGCAAATTGTGT+TGG | 0.522888 | 3_4:+74542246 | Msa0521620:CDS |
| TTTGTTTCAGGTATGATCAT+GGG | 0.526377 | 3_4:+74543459 | Msa0521620:intron |
| CGGAACGAACCATAAGGAAC+CGG | 0.527270 | 3_4:-74545134 | None:intergenic |
| CAGCAATCCACCGATTATAC+CGG | 0.529187 | 3_4:-74544869 | None:intergenic |
| AATGAAAATTGAGATTGAAA+GGG | 0.530652 | 3_4:-74541542 | None:intergenic |
| GGGTTATCAACACGTGTGGC+CGG | 0.530852 | 3_4:+74542000 | Msa0521620:CDS |
| TTTGAGAATATCTGCAAGTA+CGG | 0.532267 | 3_4:+74545450 | Msa0521620:CDS |
| ATATATATCTTCACAATCAC+GGG | 0.532934 | 3_4:+74545779 | Msa0521620:three_prime_UTR |
| TCTTAAAAGGGCTTGAGACA+TGG | 0.533780 | 3_4:+74543786 | Msa0521620:CDS |
| AGGTAGGATGTCTCAGCCTA+AGG | 0.536545 | 3_4:-74543509 | None:intergenic |
| TATATATATCTTCACAATCA+CGG | 0.537445 | 3_4:+74545778 | Msa0521620:three_prime_UTR |
| GATTGAAAGGGAAGAAATGA+TGG | 0.537920 | 3_4:-74541530 | None:intergenic |
| TGTGTGTTTGGTGTGCTGGC+CGG | 0.542939 | 3_4:+74544850 | Msa0521620:CDS |
| TAATAATTTCTTCACGACGT+TGG | 0.544698 | 3_4:-74541603 | None:intergenic |
| AGAAGAGTGATAGCTTCTAC+TGG | 0.546881 | 3_4:+74544784 | Msa0521620:CDS |
| TACGGAATCACTCCATCACT+TGG | 0.549675 | 3_4:-74545614 | None:intergenic |
| GCCAGGAGACAAGAATCAAA+TGG | 0.550110 | 3_4:+74543998 | Msa0521620:CDS |
| GGATTGCTGGGACTAGGAGG+CGG | 0.552188 | 3_4:+74544883 | Msa0521620:CDS |
| CACAATATGTTGTCCAACCA+AGG | 0.555321 | 3_4:-74545286 | None:intergenic |
| ATAAGTTTCTGAGTTTCCTA+CGG | 0.556116 | 3_4:-74545632 | None:intergenic |
| GGAGAATGTCATTGCGAAAG+TGG | 0.557248 | 3_4:-74545069 | None:intergenic |
| CTCCTCGTCTATGTCTGTTG+TGG | 0.560055 | 3_4:+74545088 | Msa0521620:CDS |
| TGCAGGAAATGGAATTTGGT+TGG | 0.562713 | 3_4:+74542233 | Msa0521620:intron |
| GCAGATCCCAATTGCAGTTG+GGG | 0.562723 | 3_4:+74544726 | Msa0521620:intron |
| CAAGGGAAAGCATTTACAGT+TGG | 0.564981 | 3_4:+74544811 | Msa0521620:CDS |
| ATTCAACCTATGCTCATGCT+TGG | 0.566741 | 3_4:+74543570 | Msa0521620:CDS |
| GTTTGAAACTTACTTGAGGA+GGG | 0.568900 | 3_4:-74544942 | None:intergenic |
| CAACTGTCTACTACAACCTT+AGG | 0.569715 | 3_4:+74543493 | Msa0521620:CDS |
| ATCGGTGGATTGCTGGGACT+AGG | 0.570311 | 3_4:+74544877 | Msa0521620:CDS |
| AAATCCCATATATTCATGAT+CGG | 0.571395 | 3_4:-74545430 | None:intergenic |
| ACACACAATAGATGACTAGC+TGG | 0.573367 | 3_4:-74544834 | None:intergenic |
| GCTGCGTTTGGAAGTGTTGG+AGG | 0.574281 | 3_4:+74542292 | Msa0521620:CDS |
| GTGAAGAAGAAAATTCGGAC+AGG | 0.578014 | 3_4:-74541692 | None:intergenic |
| ATCAGTGCAATCTCATTAGG+TGG | 0.579952 | 3_4:+74545375 | Msa0521620:CDS |
| AGGCAACTGCATTGTTCACA+GGG | 0.582240 | 3_4:+74544761 | Msa0521620:CDS |
| AGTTTGAAACTTACTTGAGG+AGG | 0.587517 | 3_4:-74544943 | None:intergenic |
| GTCAATGATTGGCATATCCA+AGG | 0.593318 | 3_4:-74543529 | None:intergenic |
| TTACATCCTCGCATAGCATG+AGG | 0.594594 | 3_4:+74545832 | Msa0521620:three_prime_UTR |
| TGTCATTGCGAAAGTGGCTG+TGG | 0.598176 | 3_4:-74545063 | None:intergenic |
| GGTGGATTGCTGGGACTAGG+AGG | 0.603818 | 3_4:+74544880 | Msa0521620:CDS |
| GGATAAGAAATAATCTATCA+CGG | 0.610056 | 3_4:-74545563 | None:intergenic |
| ATGATTGGCATATCCAAGGT+AGG | 0.612586 | 3_4:-74543525 | None:intergenic |
| CTGATACCAAGCATGAGCAT+AGG | 0.621971 | 3_4:-74543576 | None:intergenic |
| TATTCAAAAGCTGCGAACCG+AGG | 0.622984 | 3_4:+74545524 | Msa0521620:three_prime_UTR |
| TAGGCTGAGACATCCTACCT+TGG | 0.634297 | 3_4:+74543512 | Msa0521620:CDS |
| AGGCTGCAATAGTAGCCACC+AGG | 0.634890 | 3_4:-74545266 | None:intergenic |
| AGTTGGGGTAACTGCGTACG+AGG | 0.636664 | 3_4:+74544741 | Msa0521620:CDS |
| TACATCCTCGCATAGCATGA+GGG | 0.639154 | 3_4:+74545833 | Msa0521620:three_prime_UTR |
| AACCTCCCTCATGCTATGCG+AGG | 0.640641 | 3_4:-74545838 | None:intergenic |
| TATATCTTCACAATCACGGG+AGG | 0.644652 | 3_4:+74545782 | Msa0521620:three_prime_UTR |
| CCAATAATAAGACTGAGCAT+AGG | 0.644853 | 3_4:-74542340 | None:intergenic |
| TAGCTTCTACTGGTGATCAA+GGG | 0.646261 | 3_4:+74544794 | Msa0521620:CDS |
| TTGGACAACATATTGTGAGA+AGG | 0.670015 | 3_4:+74545292 | Msa0521620:CDS |
| GATCGGGTTATCAACACGTG+TGG | 0.675635 | 3_4:+74541996 | Msa0521620:CDS |
| ATATCTTCACAATCACGGGA+GGG | 0.676303 | 3_4:+74545783 | Msa0521620:three_prime_UTR |
| GTGCTGGCCGGTATAATCGG+TGG | 0.677338 | 3_4:+74544862 | Msa0521620:CDS |
| ATCCTCGCATAGCATGAGGG+AGG | 0.678812 | 3_4:+74545836 | Msa0521620:three_prime_UTR |
| AAGTGATGGAGTGATTCCGT+AGG | 0.682504 | 3_4:+74545616 | Msa0521620:three_prime_UTR |
| AGCTCTTTACTTGAGCCTGG+TGG | 0.686286 | 3_4:+74545251 | Msa0521620:intron |
| TGCCATTGAAAAGGAAAACG+AGG | 0.701492 | 3_4:+74544154 | Msa0521620:CDS |
| TTCCACAACAGACATAGACG+AGG | 0.749880 | 3_4:-74545090 | None:intergenic |
| GGAACTCTGAATATCACACG+CGG | 0.790116 | 3_4:+74541426 | Msa0521620:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAATAATTTAAAAAAA+AGG | + | chr3_4:74542873-74542892 | Msa0521620:intron | 0.0% |
| !!! | ATAATAATATTTTATTAAAA+TGG | + | chr3_4:74542900-74542919 | Msa0521620:intron | 0.0% |
| !! | AAAAAAAAAAAATATTAATA+TGG | + | chr3_4:74543042-74543061 | Msa0521620:intron | 0.0% |
| !! | AAAAAATATTAATATGGTAA+AGG | + | chr3_4:74543048-74543067 | Msa0521620:intron | 10.0% |
| !! | TTCCATATTTAATAATAATT+TGG | + | chr3_4:74544211-74544230 | Msa0521620:intron | 10.0% |
| !! | TACCAAATTATTATTAAATA+TGG | - | chr3_4:74544216-74544235 | None:intergenic | 10.0% |
| !! | AATAAAAGAACACAATAATT+TGG | - | chr3_4:74541500-74541519 | None:intergenic | 15.0% |
| !! | GTATTAGTAACATTAAAATT+TGG | - | chr3_4:74541911-74541930 | None:intergenic | 15.0% |
| !! | AAAAGATAAATAGTAGTATT+TGG | + | chr3_4:74542091-74542110 | Msa0521620:intron | 15.0% |
| !! | AAATAATTATCTGAAAGTAA+CGG | - | chr3_4:74542536-74542555 | None:intergenic | 15.0% |
| !! | TTTCAAAAGAGATATTATAA+TGG | + | chr3_4:74542811-74542830 | Msa0521620:intron | 15.0% |
| !! | TTCAAAAGAGATATTATAAT+GGG | + | chr3_4:74542812-74542831 | Msa0521620:intron | 15.0% |
| !! | AATTGTTTACTAAATGATAA+GGG | - | chr3_4:74542849-74542868 | None:intergenic | 15.0% |
| !! | TAATTGTTTACTAAATGATA+AGG | - | chr3_4:74542850-74542869 | None:intergenic | 15.0% |
| !! | AATTGAATTATCTAAGAAAA+TGG | - | chr3_4:74543181-74543200 | None:intergenic | 15.0% |
| !!! | ATTTTCTTAGATAATTCAAT+TGG | + | chr3_4:74543180-74543199 | Msa0521620:intron | 15.0% |
| !!! | AATTTTTTTTACTCTTATGT+AGG | + | chr3_4:74543746-74543765 | Msa0521620:intron | 15.0% |
| !! | CTATAATTGAAAATGTATAT+TGG | + | chr3_4:74544366-74544385 | Msa0521620:intron | 15.0% |
| !! | ATTAATTGAAAGTTATAAAC+TGG | - | chr3_4:74544487-74544506 | None:intergenic | 15.0% |
| !!! | CTTTTTATAATATTCAGTTT+TGG | + | chr3_4:74545181-74545200 | Msa0521620:intron | 15.0% |
| !! | TATATAACAAGCTAAATTAT+TGG | - | chr3_4:74545764-74545783 | None:intergenic | 15.0% |
| !! | AATGAAAATTGAGATTGAAA+GGG | - | chr3_4:74541545-74541564 | None:intergenic | 20.0% |
| !! | AAATGAAAATTGAGATTGAA+AGG | - | chr3_4:74541546-74541565 | None:intergenic | 20.0% |
| !!! | TATTTTTCCACAGAAAATAA+AGG | - | chr3_4:74541639-74541658 | None:intergenic | 20.0% |
| !! | AATTCAAAGAACAAAAAACA+TGG | + | chr3_4:74541787-74541806 | Msa0521620:exon | 20.0% |
| !! | ATTCAAAGAACAAAAAACAT+GGG | + | chr3_4:74541788-74541807 | Msa0521620:exon | 20.0% |
| !!! | TTATTTCTTTCTGAATTCTA+TGG | + | chr3_4:74542126-74542145 | Msa0521620:intron | 20.0% |
| !! | TAATTATTTCAACCACTTAA+CGG | + | chr3_4:74542547-74542566 | Msa0521620:intron | 20.0% |
| !! | TTATATCTTATGTCCAAATT+TGG | - | chr3_4:74542661-74542680 | None:intergenic | 20.0% |
| !! | TAAGAGTAAAAAAAATTCAG+AGG | - | chr3_4:74543743-74543762 | None:intergenic | 20.0% |
| !! | AAACATTTATTTGTTCACAA+TGG | - | chr3_4:74543886-74543905 | None:intergenic | 20.0% |
| !!! | TACCTATTTTAATTCATTCT+AGG | + | chr3_4:74543970-74543989 | Msa0521620:intron | 20.0% |
| !!! | GAGTTTATTCAATTTCTTTT+TGG | + | chr3_4:74544087-74544106 | Msa0521620:intron | 20.0% |
| !!! | TATTCAATTTCTTTTTGGTT+AGG | + | chr3_4:74544092-74544111 | Msa0521620:intron | 20.0% |
| !! | AATTGAAAATGTATATTGGA+AGG | + | chr3_4:74544370-74544389 | Msa0521620:intron | 20.0% |
| !! | GTTACAAGTTACAAAAATAT+CGG | + | chr3_4:74544669-74544688 | Msa0521620:intron | 20.0% |
| !! | ATGAAAATTTGACAATAATC+CGG | + | chr3_4:74545727-74545746 | Msa0521620:three_prime_UTR | 20.0% |
| !! | TATATATATCTTCACAATCA+CGG | + | chr3_4:74545778-74545797 | Msa0521620:three_prime_UTR | 20.0% |
| !!! | TAATTTGGTTTGCAAAATGA+AGG | - | chr3_4:74541485-74541504 | None:intergenic | 25.0% |
| ! | TGAAAATGAGATCCATATTA+TGG | + | chr3_4:74541816-74541835 | Msa0521620:CDS | 25.0% |
| !! | TATTTTCACAAGCTTTCTTT+CGG | - | chr3_4:74541882-74541901 | None:intergenic | 25.0% |
| !!! | TTGTTTATTTGTTATGTTGC+AGG | + | chr3_4:74542216-74542235 | Msa0521620:intron | 25.0% |
| ! | TGAACCTTGTACAATTAAAT+TGG | + | chr3_4:74542464-74542483 | Msa0521620:intron | 25.0% |
| ! | AGAGAATTAAATGCTTATCA+AGG | + | chr3_4:74542586-74542605 | Msa0521620:intron | 25.0% |
| ! | CTTGTATGGTCAAAAAATTT+GGG | - | chr3_4:74542768-74542787 | None:intergenic | 25.0% |
| ! | TCTTGTATGGTCAAAAAATT+TGG | - | chr3_4:74542769-74542788 | None:intergenic | 25.0% |
| !! | CTAAATATATGACTCTTTTC+CGG | - | chr3_4:74543101-74543120 | None:intergenic | 25.0% |
| ! | GGAAAAGAGTCATATATTTA+GGG | + | chr3_4:74543100-74543119 | Msa0521620:intron | 25.0% |
| !!! | CAGGGATAATTTAGTTTTTA+AGG | - | chr3_4:74543366-74543385 | None:intergenic | 25.0% |
| !! | TTGCTTATTGTTCTTTTCTT+AGG | + | chr3_4:74543648-74543667 | Msa0521620:CDS | 25.0% |
| !!! | TCAACAAAAGCATTCTTAAA+AGG | + | chr3_4:74543773-74543792 | Msa0521620:CDS | 25.0% |
| !!! | CAACAAAAGCATTCTTAAAA+GGG | + | chr3_4:74543774-74543793 | Msa0521620:CDS | 25.0% |
| ! | TAAGGAAACCATAATGAAAA+AGG | + | chr3_4:74543811-74543830 | Msa0521620:CDS | 25.0% |
| !!! | AAATGAGACCTTTTTCATTA+TGG | - | chr3_4:74543822-74543841 | None:intergenic | 25.0% |
| ! | CTCCTAGAATGAATTAAAAT+AGG | - | chr3_4:74543975-74543994 | None:intergenic | 25.0% |
| !!! | CTATTTTAATTCATTCTAGG+AGG | + | chr3_4:74543973-74543992 | Msa0521620:intron | 25.0% |
| !!! | AGGACAACTTTATTTTGTTT+TGG | - | chr3_4:74544043-74544062 | None:intergenic | 25.0% |
| ! | AAAACAAAATAAAGTTGTCC+TGG | + | chr3_4:74544042-74544061 | Msa0521620:intron | 25.0% |
| ! | GTACAAGAGACTATTATATT+GGG | + | chr3_4:74544176-74544195 | Msa0521620:intron | 25.0% |
| ! | TACAAGAGACTATTATATTG+GGG | + | chr3_4:74544177-74544196 | Msa0521620:intron | 25.0% |
| ! | TCAATAATGTGTCAAATTAG+TGG | - | chr3_4:74544319-74544338 | None:intergenic | 25.0% |
| ! | ATAATAATTCGTTCAATTGC+AGG | + | chr3_4:74544340-74544359 | Msa0521620:intron | 25.0% |
| ! | AAATCCCATATATTCATGAT+CGG | - | chr3_4:74545433-74545452 | None:intergenic | 25.0% |
| ! | GGATAAGAAATAATCTATCA+CGG | - | chr3_4:74545566-74545585 | None:intergenic | 25.0% |
| !! | TTATTTCTTATCCTGATAGA+AGG | + | chr3_4:74545573-74545592 | Msa0521620:three_prime_UTR | 25.0% |
| ! | AAAAAATTACACCTTCTATC+AGG | - | chr3_4:74545587-74545606 | None:intergenic | 25.0% |
| !! | TTTTTATTATTGCCAAGTGA+TGG | + | chr3_4:74545602-74545621 | Msa0521620:three_prime_UTR | 25.0% |
| ! | ATATATATCTTCACAATCAC+GGG | + | chr3_4:74545779-74545798 | Msa0521620:three_prime_UTR | 25.0% |
| ! | AAAAAATGTGCATAATGATC+CGG | - | chr3_4:74545866-74545885 | None:intergenic | 25.0% |
| TAATAATTTCTTCACGACGT+TGG | - | chr3_4:74541606-74541625 | None:intergenic | 30.0% | |
| ! | GTTTGGTGAAGAAGAAAATT+CGG | - | chr3_4:74541700-74541719 | None:intergenic | 30.0% |
| TAGCAACATCATCCATAATA+TGG | - | chr3_4:74541831-74541850 | None:intergenic | 30.0% | |
| !! | CAAAAGCTGTTGATTTCTTA+TGG | + | chr3_4:74541963-74541982 | Msa0521620:CDS | 30.0% |
| GATTTCTTATGGAAATCAGA+TGG | + | chr3_4:74541974-74541993 | Msa0521620:CDS | 30.0% | |
| ACAGAAAAGTGAAATCTTAC+CGG | - | chr3_4:74542022-74542041 | None:intergenic | 30.0% | |
| !! | GTAAGATTTCACTTTTCTGT+TGG | + | chr3_4:74542022-74542041 | Msa0521620:intron | 30.0% |
| !! | ATTTGTTATGTTGCAGGAAA+TGG | + | chr3_4:74542222-74542241 | Msa0521620:intron | 30.0% |
| !!! | ATTGTGTTGGGTAGTTTTAT+TGG | + | chr3_4:74542259-74542278 | Msa0521620:CDS | 30.0% |
| !!! | GGTAGTTTTATTGGATTTTG+TGG | + | chr3_4:74542268-74542287 | Msa0521620:CDS | 30.0% |
| GAGACCAATTTAATTGTACA+AGG | - | chr3_4:74542471-74542490 | None:intergenic | 30.0% | |
| AGTACTCCAAAATACTTGTA+TGG | + | chr3_4:74542634-74542653 | Msa0521620:intron | 30.0% | |
| ! | TTTGGACCATACAAGTATTT+TGG | - | chr3_4:74542643-74542662 | None:intergenic | 30.0% |
| ATACTTGTATGGTCCAAATT+TGG | + | chr3_4:74542645-74542664 | Msa0521620:intron | 30.0% | |
| AGTATAGAGAAACTCTTGTA+TGG | - | chr3_4:74542782-74542801 | None:intergenic | 30.0% | |
| CTTAGAGTATGTTTCTTACA+AGG | + | chr3_4:74542987-74543006 | Msa0521620:intron | 30.0% | |
| TGTTCATAGTAGATACATTC+CGG | + | chr3_4:74543079-74543098 | Msa0521620:intron | 30.0% | |
| CGGAAAAGAGTCATATATTT+AGG | + | chr3_4:74543099-74543118 | Msa0521620:intron | 30.0% | |
| AAGCTAATGATTGAAGAAGT+TGG | + | chr3_4:74543206-74543225 | Msa0521620:intron | 30.0% | |
| ATTGAAGAAGTTGGAAAATC+CGG | + | chr3_4:74543215-74543234 | Msa0521620:intron | 30.0% | |
| TTTAGTATTGTTCCTGAATC+CGG | - | chr3_4:74543237-74543256 | None:intergenic | 30.0% | |
| AGCTTATTTATGCTTGTTTG+TGG | - | chr3_4:74543334-74543353 | None:intergenic | 30.0% | |
| CTCTCTTTGATTAATGTTCA+GGG | - | chr3_4:74543384-74543403 | None:intergenic | 30.0% | |
| TCTCTCTTTGATTAATGTTC+AGG | - | chr3_4:74543385-74543404 | None:intergenic | 30.0% | |
| ! | TTTGTTTCAGGTATGATCAT+GGG | + | chr3_4:74543459-74543478 | Msa0521620:intron | 30.0% |
| GCTAAATCATAGTCAATGAT+TGG | - | chr3_4:74543543-74543562 | None:intergenic | 30.0% | |
| GAAGAAGACAGTTGAATTAA+TGG | - | chr3_4:74543677-74543696 | None:intergenic | 30.0% | |
| TCTGACATCAGGAAAAATAA+TGG | - | chr3_4:74544069-74544088 | None:intergenic | 30.0% | |
| ATTGAATAAACTCTGACATC+AGG | - | chr3_4:74544080-74544099 | None:intergenic | 30.0% | |
| !!! | ATTTCTTTTTGGTTAGGTTC+AGG | + | chr3_4:74544098-74544117 | Msa0521620:intron | 30.0% |
| GGTACAAGAGACTATTATAT+TGG | + | chr3_4:74544175-74544194 | Msa0521620:intron | 30.0% | |
| ACAAGAGACTATTATATTGG+GGG | + | chr3_4:74544178-74544197 | Msa0521620:intron | 30.0% | |
| !! | TTAGTGTCACTTTGATCAAA+TGG | - | chr3_4:74544243-74544262 | None:intergenic | 30.0% |
| TTTGATCAAAGTGACACTAA+TGG | + | chr3_4:74544243-74544262 | Msa0521620:intron | 30.0% | |
| AATGTATATTGGAAGGAGTT+TGG | + | chr3_4:74544377-74544396 | Msa0521620:intron | 30.0% | |
| ATGTATATTGGAAGGAGTTT+GGG | + | chr3_4:74544378-74544397 | Msa0521620:intron | 30.0% | |
| AGCATGATTCCTAATTGAAT+CGG | + | chr3_4:74545015-74545034 | Msa0521620:intron | 30.0% | |
| ! | TCACATTTCAAAAAGTGCAT+TGG | - | chr3_4:74545226-74545245 | None:intergenic | 30.0% |
| TTTATCAGTGCAATCTCATT+AGG | + | chr3_4:74545372-74545391 | Msa0521620:CDS | 30.0% | |
| ATTGCCGATCATGAATATAT+GGG | + | chr3_4:74545426-74545445 | Msa0521620:CDS | 30.0% | |
| TTTGAGAATATCTGCAAGTA+CGG | + | chr3_4:74545450-74545469 | Msa0521620:CDS | 30.0% | |
| ATAAGTTTCTGAGTTTCCTA+CGG | - | chr3_4:74545635-74545654 | None:intergenic | 30.0% | |
| CACATGCATCTTAATCTAAA+TGG | - | chr3_4:74545681-74545700 | None:intergenic | 30.0% | |
| ATTATTGGCAATGTACAAAC+CGG | - | chr3_4:74545749-74545768 | None:intergenic | 30.0% | |
| TATTCAGAGTTCCGTTTACT+CGG | - | chr3_4:74541419-74541438 | None:intergenic | 35.0% | |
| GATTGAAAGGGAAGAAATGA+TGG | - | chr3_4:74541533-74541552 | None:intergenic | 35.0% | |
| ! | ACAGGTAGAACTGAATTTTC+GGG | - | chr3_4:74541677-74541696 | None:intergenic | 35.0% |
| ! | GACAGGTAGAACTGAATTTT+CGG | - | chr3_4:74541678-74541697 | None:intergenic | 35.0% |
| ! | TGGATGATGTTGCTATTGTT+TGG | + | chr3_4:74541836-74541855 | Msa0521620:CDS | 35.0% |
| CTTATGGAAATCAGATGGAT+CGG | + | chr3_4:74541979-74541998 | Msa0521620:CDS | 35.0% | |
| TTATGGAAATCAGATGGATC+GGG | + | chr3_4:74541980-74541999 | Msa0521620:CDS | 35.0% | |
| TTCGTCAGTTATTGTAGCTT+TGG | + | chr3_4:74542182-74542201 | Msa0521620:intron | 35.0% | |
| TCGTCAGTTATTGTAGCTTT+GGG | + | chr3_4:74542183-74542202 | Msa0521620:intron | 35.0% | |
| ATGTTGCAGGAAATGGAATT+TGG | + | chr3_4:74542229-74542248 | Msa0521620:intron | 35.0% | |
| ATTTGGTTGGCAAATTGTGT+TGG | + | chr3_4:74542246-74542265 | Msa0521620:CDS | 35.0% | |
| TTTGGTTGGCAAATTGTGTT+GGG | + | chr3_4:74542247-74542266 | Msa0521620:CDS | 35.0% | |
| CCAATAATAAGACTGAGCAT+AGG | - | chr3_4:74542343-74542362 | None:intergenic | 35.0% | |
| !! | CCTATGCTCAGTCTTATTAT+TGG | + | chr3_4:74542340-74542359 | Msa0521620:CDS | 35.0% |
| AGAATCACGTGTCTTACATT+TGG | - | chr3_4:74542395-74542414 | None:intergenic | 35.0% | |
| ATTCTCTACGTGTTCTCTTT+CGG | - | chr3_4:74542573-74542592 | None:intergenic | 35.0% | |
| TACAAGGTCTCAAATTCGAT+AGG | + | chr3_4:74543003-74543022 | Msa0521620:intron | 35.0% | |
| !! | TGTATCTCAAACTCTGGTTT+TGG | - | chr3_4:74543283-74543302 | None:intergenic | 35.0% |
| !! | GTTTGAGATACACTGGATTT+TGG | + | chr3_4:74543291-74543310 | Msa0521620:intron | 35.0% |
| TAGCGTGTTATGTTTGTTTC+AGG | + | chr3_4:74543447-74543466 | Msa0521620:intron | 35.0% | |
| ! | GTTTGTTTCAGGTATGATCA+TGG | + | chr3_4:74543458-74543477 | Msa0521620:intron | 35.0% |
| TCAACGTTGTATTTCCTGAT+TGG | + | chr3_4:74543613-74543632 | Msa0521620:CDS | 35.0% | |
| AATATAGTGACAAGCCAATC+AGG | - | chr3_4:74543630-74543649 | None:intergenic | 35.0% | |
| ATCAGGAAAAATAATGGTCC+AGG | - | chr3_4:74544063-74544082 | None:intergenic | 35.0% | |
| GAATATAAAGCTCTTCCAAC+TGG | + | chr3_4:74544122-74544141 | Msa0521620:CDS | 35.0% | |
| ACCAAATGTTGCCATTGAAA+AGG | + | chr3_4:74544145-74544164 | Msa0521620:CDS | 35.0% | |
| ! | TCCTTTTCAATGGCAACATT+TGG | - | chr3_4:74544149-74544168 | None:intergenic | 35.0% |
| ! | TACCTCGTTTTCCTTTTCAA+TGG | - | chr3_4:74544159-74544178 | None:intergenic | 35.0% |
| TTGTCCTTCTAATCCAATGA+CGG | - | chr3_4:74544289-74544308 | None:intergenic | 35.0% | |
| TACATGTTCTGCAGCATATT+GGG | + | chr3_4:74544540-74544559 | Msa0521620:CDS | 35.0% | |
| ACAGGTAAATTTACCTCTAG+TGG | + | chr3_4:74544576-74544595 | Msa0521620:intron | 35.0% | |
| AAGAAAAGCAAATCCACTAG+AGG | - | chr3_4:74544592-74544611 | None:intergenic | 35.0% | |
| CTAGTCATCTATTGTGTGTT+TGG | + | chr3_4:74544838-74544857 | Msa0521620:CDS | 35.0% | |
| ! | GTTTGAAACTTACTTGAGGA+GGG | - | chr3_4:74544945-74544964 | None:intergenic | 35.0% |
| ! | AGTTTGAAACTTACTTGAGG+AGG | - | chr3_4:74544946-74544965 | None:intergenic | 35.0% |
| ! | TGCAGTTTGAAACTTACTTG+AGG | - | chr3_4:74544949-74544968 | None:intergenic | 35.0% |
| AGAAGACATCCGATTCAATT+AGG | - | chr3_4:74545027-74545046 | None:intergenic | 35.0% | |
| AAGTAAGTTAGAAGCTATCG+CGG | - | chr3_4:74545157-74545176 | None:intergenic | 35.0% | |
| TTGGACAACATATTGTGAGA+AGG | + | chr3_4:74545292-74545311 | Msa0521620:CDS | 35.0% | |
| CTCATCATCTTTATTCTAGC+TGG | + | chr3_4:74545342-74545361 | Msa0521620:CDS | 35.0% | |
| TGGAGTTGGCATTTCAAATA+TGG | + | chr3_4:74545395-74545414 | Msa0521620:CDS | 35.0% | |
| GATTGCCGATCATGAATATA+TGG | + | chr3_4:74545425-74545444 | Msa0521620:CDS | 35.0% | |
| TGCATAAGTAGCCGAGTAAA+CGG | + | chr3_4:74541405-74541424 | Msa0521620:five_prime_UTR | 40.0% | |
| TCCACAGAAAATAAAGGAGC+AGG | - | chr3_4:74541633-74541652 | None:intergenic | 40.0% | |
| GTGAAGAAGAAAATTCGGAC+AGG | - | chr3_4:74541695-74541714 | None:intergenic | 40.0% | |
| !! | TATTGTAGCTTTGGGTGATG+TGG | + | chr3_4:74542191-74542210 | Msa0521620:intron | 40.0% |
| TGCAGGAAATGGAATTTGGT+TGG | + | chr3_4:74542233-74542252 | Msa0521620:intron | 40.0% | |
| GAGATAGCAGTCGATGATTT+AGG | - | chr3_4:74542373-74542392 | None:intergenic | 40.0% | |
| AAGTTGGAAAATCCGGATTC+AGG | + | chr3_4:74543222-74543241 | Msa0521620:intron | 40.0% | |
| !!! | CTCAAACTCTGGTTTTGGAT+AGG | - | chr3_4:74543278-74543297 | None:intergenic | 40.0% |
| ! | AACCAGAGTTTGAGATACAC+TGG | + | chr3_4:74543284-74543303 | Msa0521620:intron | 40.0% |
| ATCCAGTGTATCTCAAACTC+TGG | - | chr3_4:74543289-74543308 | None:intergenic | 40.0% | |
| AGAGAACATTTGCAGCTTCT+TGG | + | chr3_4:74543400-74543419 | Msa0521620:intron | 40.0% | |
| CAACTGTCTACTACAACCTT+AGG | + | chr3_4:74543493-74543512 | Msa0521620:CDS | 40.0% | |
| ATGATTGGCATATCCAAGGT+AGG | - | chr3_4:74543528-74543547 | None:intergenic | 40.0% | |
| GTCAATGATTGGCATATCCA+AGG | - | chr3_4:74543532-74543551 | None:intergenic | 40.0% | |
| ATTCAACCTATGCTCATGCT+TGG | + | chr3_4:74543570-74543589 | Msa0521620:CDS | 40.0% | |
| TCTTAAAAGGGCTTGAGACA+TGG | + | chr3_4:74543786-74543805 | Msa0521620:CDS | 40.0% | |
| ACCATTTGATTCTTGTCTCC+TGG | - | chr3_4:74544002-74544021 | None:intergenic | 40.0% | |
| TGCCATTGAAAAGGAAAACG+AGG | + | chr3_4:74544154-74544173 | Msa0521620:CDS | 40.0% | |
| AGAGACTATTATATTGGGGG+AGG | + | chr3_4:74544181-74544200 | Msa0521620:intron | 40.0% | |
| GAGACTATTATATTGGGGGA+GGG | + | chr3_4:74544182-74544201 | Msa0521620:intron | 40.0% | |
| AAAGTGACACTAATGGTCTC+TGG | + | chr3_4:74544250-74544269 | Msa0521620:intron | 40.0% | |
| AGGAATTTGAACTCCGTCAT+TGG | + | chr3_4:74544273-74544292 | Msa0521620:intron | 40.0% | |
| ! | AACTCCGTCATTGGATTAGA+AGG | + | chr3_4:74544282-74544301 | Msa0521620:intron | 40.0% |
| TGTGATGACAGAACAAACCT+TGG | - | chr3_4:74544447-74544466 | None:intergenic | 40.0% | |
| CTACATGTTCTGCAGCATAT+TGG | + | chr3_4:74544539-74544558 | Msa0521620:CDS | 40.0% | |
| !! | TTGGGTACTGAACTTGTTAC+AGG | + | chr3_4:74544558-74544577 | Msa0521620:CDS | 40.0% |
| AGAAGAGTGATAGCTTCTAC+TGG | + | chr3_4:74544784-74544803 | Msa0521620:CDS | 40.0% | |
| ATAGCTTCTACTGGTGATCA+AGG | + | chr3_4:74544793-74544812 | Msa0521620:CDS | 40.0% | |
| TAGCTTCTACTGGTGATCAA+GGG | + | chr3_4:74544794-74544813 | Msa0521620:CDS | 40.0% | |
| !! | CAAGGGAAAGCATTTACAGT+TGG | + | chr3_4:74544811-74544830 | Msa0521620:CDS | 40.0% |
| ACACACAATAGATGACTAGC+TGG | - | chr3_4:74544837-74544856 | None:intergenic | 40.0% | |
| !! | ACTCCTAGCTCTAGAAAAAG+TGG | - | chr3_4:74544922-74544941 | None:intergenic | 40.0% |
| TTTGATGAGCAGGATAAGAG+AGG | - | chr3_4:74544986-74545005 | None:intergenic | 40.0% | |
| TATCCTGCTCATCAAACAGT+TGG | + | chr3_4:74544990-74545009 | Msa0521620:intron | 40.0% | |
| TAACCAACTGTTTGATGAGC+AGG | - | chr3_4:74544996-74545015 | None:intergenic | 40.0% | |
| ! | CTACTTGCTGAAACGATTTC+CGG | + | chr3_4:74545115-74545134 | Msa0521620:CDS | 40.0% |
| AAACGATTTCCGGTTCCTTA+TGG | + | chr3_4:74545125-74545144 | Msa0521620:CDS | 40.0% | |
| CACAATATGTTGTCCAACCA+AGG | - | chr3_4:74545289-74545308 | None:intergenic | 40.0% | |
| AGAAGGCTGATCATCCTATT+TGG | + | chr3_4:74545309-74545328 | Msa0521620:CDS | 40.0% | |
| TGAGAGATGCTCTTCCAAAT+AGG | - | chr3_4:74545326-74545345 | None:intergenic | 40.0% | |
| ATCAGTGCAATCTCATTAGG+TGG | + | chr3_4:74545375-74545394 | Msa0521620:CDS | 40.0% | |
| TATATCTTCACAATCACGGG+AGG | + | chr3_4:74545782-74545801 | Msa0521620:three_prime_UTR | 40.0% | |
| ATATCTTCACAATCACGGGA+GGG | + | chr3_4:74545783-74545802 | Msa0521620:three_prime_UTR | 40.0% | |
| GGAACTCTGAATATCACACG+CGG | + | chr3_4:74541426-74541445 | Msa0521620:five_prime_UTR | 45.0% | |
| !!! | GCCTGCTCCTTTATTTTCTG+TGG | + | chr3_4:74541629-74541648 | Msa0521620:five_prime_UTR | 45.0% |
| ACCAAACAGAACACGAGTCT+TGG | + | chr3_4:74541713-74541732 | Msa0521620:five_prime_UTR | 45.0% | |
| ACCAAGACTCGTGTTCTGTT+TGG | - | chr3_4:74541717-74541736 | None:intergenic | 45.0% | |
| !! | TTTGGAAGTGTTGGAGGTGT+AGG | + | chr3_4:74542298-74542317 | Msa0521620:CDS | 45.0% |
| CTGATACCAAGCATGAGCAT+AGG | - | chr3_4:74543579-74543598 | None:intergenic | 45.0% | |
| CTCATGCTTGGTATCAGCAT+TGG | + | chr3_4:74543582-74543601 | Msa0521620:CDS | 45.0% | |
| AGGGCTTGAGACATGGAATA+AGG | + | chr3_4:74543793-74543812 | Msa0521620:CDS | 45.0% | |
| GCCAGGAGACAAGAATCAAA+TGG | + | chr3_4:74543998-74544017 | Msa0521620:CDS | 45.0% | |
| ATGGCAACATTTGGTCCAGT+TGG | - | chr3_4:74544140-74544159 | None:intergenic | 45.0% | |
| TTGGGCTACTAGCATTTGTG+TGG | + | chr3_4:74544396-74544415 | Msa0521620:intron | 45.0% | |
| ATGCAGATCCCAATTGCAGT+TGG | + | chr3_4:74544724-74544743 | Msa0521620:intron | 45.0% | |
| TGCAGATCCCAATTGCAGTT+GGG | + | chr3_4:74544725-74544744 | Msa0521620:intron | 45.0% | |
| CAGTTACCCCAACTGCAATT+GGG | - | chr3_4:74544735-74544754 | None:intergenic | 45.0% | |
| AGGCAACTGCATTGTTCACA+GGG | + | chr3_4:74544761-74544780 | Msa0521620:CDS | 45.0% | |
| !! | CTATTGTGTGTTTGGTGTGC+TGG | + | chr3_4:74544846-74544865 | Msa0521620:CDS | 45.0% |
| ! | CAGCAATCCACCGATTATAC+CGG | - | chr3_4:74544872-74544891 | None:intergenic | 45.0% |
| !! | GGTATAATCGGTGGATTGCT+GGG | + | chr3_4:74544871-74544890 | Msa0521620:CDS | 45.0% |
| !! | ACTAGGAGGCGGATTTGTTA+TGG | + | chr3_4:74544894-74544913 | Msa0521620:CDS | 45.0% |
| !! | CTAGGAGGCGGATTTGTTAT+GGG | + | chr3_4:74544895-74544914 | Msa0521620:CDS | 45.0% |
| !!! | GGTCCACTTTTTCTAGAGCT+AGG | + | chr3_4:74544916-74544935 | Msa0521620:CDS | 45.0% |
| GAATCGGATGTCTTCTGTGT+AGG | + | chr3_4:74545031-74545050 | Msa0521620:intron | 45.0% | |
| GGAGAATGTCATTGCGAAAG+TGG | - | chr3_4:74545072-74545091 | None:intergenic | 45.0% | |
| TTCCACAACAGACATAGACG+AGG | - | chr3_4:74545093-74545112 | None:intergenic | 45.0% | |
| GCAATCTCATTAGGTGGAGT+TGG | + | chr3_4:74545381-74545400 | Msa0521620:CDS | 45.0% | |
| TATTCAAAAGCTGCGAACCG+AGG | + | chr3_4:74545524-74545543 | Msa0521620:three_prime_UTR | 45.0% | |
| TACGGAATCACTCCATCACT+TGG | - | chr3_4:74545617-74545636 | None:intergenic | 45.0% | |
| ! | AAGTGATGGAGTGATTCCGT+AGG | + | chr3_4:74545616-74545635 | Msa0521620:three_prime_UTR | 45.0% |
| TTACATCCTCGCATAGCATG+AGG | + | chr3_4:74545832-74545851 | Msa0521620:three_prime_UTR | 45.0% | |
| TACATCCTCGCATAGCATGA+GGG | + | chr3_4:74545833-74545852 | Msa0521620:three_prime_UTR | 45.0% | |
| ATAGCATGAGGGAGGTTTAC+CGG | + | chr3_4:74545844-74545863 | Msa0521620:three_prime_UTR | 45.0% | |
| GATCGGGTTATCAACACGTG+TGG | + | chr3_4:74541996-74542015 | Msa0521620:CDS | 50.0% | |
| ! | GGATTTTGTGGAGCTGCGTT+TGG | + | chr3_4:74542280-74542299 | Msa0521620:CDS | 50.0% |
| GTTCTCTTTCGGCCGTTAAG+TGG | - | chr3_4:74542562-74542581 | None:intergenic | 50.0% | |
| AGGTAGGATGTCTCAGCCTA+AGG | - | chr3_4:74543512-74543531 | None:intergenic | 50.0% | |
| TAGGCTGAGACATCCTACCT+TGG | + | chr3_4:74543512-74543531 | Msa0521620:CDS | 50.0% | |
| ! | ATTCATTCTAGGAGGCTGCC+AGG | + | chr3_4:74543981-74544000 | Msa0521620:intron | 50.0% |
| GTGACACTAATGGTCTCTGG+AGG | + | chr3_4:74544253-74544272 | Msa0521620:intron | 50.0% | |
| CCTTGGCAATCTGTAGTGCA+AGG | - | chr3_4:74544430-74544449 | None:intergenic | 50.0% | |
| CCTTGCACTACAGATTGCCA+AGG | + | chr3_4:74544427-74544446 | Msa0521620:intron | 50.0% | |
| GCAGATCCCAATTGCAGTTG+GGG | + | chr3_4:74544726-74544745 | Msa0521620:intron | 50.0% | |
| GCAGTTACCCCAACTGCAAT+TGG | - | chr3_4:74544736-74544755 | None:intergenic | 50.0% | |
| GAGGCAACTGCATTGTTCAC+AGG | + | chr3_4:74544760-74544779 | Msa0521620:CDS | 50.0% | |
| !! | CGGTATAATCGGTGGATTGC+TGG | + | chr3_4:74544870-74544889 | Msa0521620:CDS | 50.0% |
| TGTCATTGCGAAAGTGGCTG+TGG | - | chr3_4:74545066-74545085 | None:intergenic | 50.0% | |
| CTCCTCGTCTATGTCTGTTG+TGG | + | chr3_4:74545088-74545107 | Msa0521620:CDS | 50.0% | |
| CGGAACGAACCATAAGGAAC+CGG | - | chr3_4:74545137-74545156 | None:intergenic | 50.0% | |
| CTATCGCGGAACGAACCATA+AGG | - | chr3_4:74545143-74545162 | None:intergenic | 50.0% | |
| CACAGCTCTTTACTTGAGCC+TGG | + | chr3_4:74545248-74545267 | Msa0521620:intron | 50.0% | |
| AGCTCTTTACTTGAGCCTGG+TGG | + | chr3_4:74545251-74545270 | Msa0521620:intron | 50.0% | |
| GCTACTATTGCAGCCTTGGT+TGG | + | chr3_4:74545273-74545292 | Msa0521620:CDS | 50.0% | |
| ! | ATCACGGCCAACTTAGCTCT+TGG | - | chr3_4:74545550-74545569 | None:intergenic | 50.0% |
| ACGGGAGGGAGAACATTGTA+TGG | + | chr3_4:74545797-74545816 | Msa0521620:three_prime_UTR | 50.0% | |
| CTTCACGACGTTGGCGTGAA+GGG | - | chr3_4:74541597-74541616 | None:intergenic | 55.0% | |
| TCTTCACGACGTTGGCGTGA+AGG | - | chr3_4:74541598-74541617 | None:intergenic | 55.0% | |
| GGGTTATCAACACGTGTGGC+CGG | + | chr3_4:74542000-74542019 | Msa0521620:CDS | 55.0% | |
| ! | GGAGCTGCGTTTGGAAGTGT+TGG | + | chr3_4:74542289-74542308 | Msa0521620:CDS | 55.0% |
| !! | GCTGCGTTTGGAAGTGTTGG+AGG | + | chr3_4:74542292-74542311 | Msa0521620:CDS | 55.0% |
| !! | GGAAGTGTTGGAGGTGTAGG+TGG | + | chr3_4:74542301-74542320 | Msa0521620:CDS | 55.0% |
| ! | AGTGTTGGAGGTGTAGGTGG+TGG | + | chr3_4:74542304-74542323 | Msa0521620:CDS | 55.0% |
| AGTTGGGGTAACTGCGTACG+AGG | + | chr3_4:74544741-74544760 | Msa0521620:CDS | 55.0% | |
| !! | TGTGTGTTTGGTGTGCTGGC+CGG | + | chr3_4:74544850-74544869 | Msa0521620:CDS | 55.0% |
| ! | GGTGTGCTGGCCGGTATAAT+CGG | + | chr3_4:74544859-74544878 | Msa0521620:CDS | 55.0% |
| !! | ATCGGTGGATTGCTGGGACT+AGG | + | chr3_4:74544877-74544896 | Msa0521620:CDS | 55.0% |
| AGGCTGCAATAGTAGCCACC+AGG | - | chr3_4:74545269-74545288 | None:intergenic | 55.0% | |
| GGTGGCTACTATTGCAGCCT+TGG | + | chr3_4:74545269-74545288 | Msa0521620:CDS | 55.0% | |
| ACCGAGGCCAAGAGCTAAGT+TGG | + | chr3_4:74545540-74545559 | Msa0521620:three_prime_UTR | 55.0% | |
| ! | GCCAACTTAGCTCTTGGCCT+CGG | - | chr3_4:74545544-74545563 | None:intergenic | 55.0% |
| ATCCTCGCATAGCATGAGGG+AGG | + | chr3_4:74545836-74545855 | Msa0521620:three_prime_UTR | 55.0% | |
| AACCTCCCTCATGCTATGCG+AGG | - | chr3_4:74545841-74545860 | None:intergenic | 55.0% | |
| ! | GTTGGAGGTGTAGGTGGTGG+TGG | + | chr3_4:74542307-74542326 | Msa0521620:CDS | 60.0% |
| ! | GTGCTGGCCGGTATAATCGG+TGG | + | chr3_4:74544862-74544881 | Msa0521620:CDS | 60.0% |
| !! | GGTGGATTGCTGGGACTAGG+AGG | + | chr3_4:74544880-74544899 | Msa0521620:CDS | 60.0% |
| GGATTGCTGGGACTAGGAGG+CGG | + | chr3_4:74544883-74544902 | Msa0521620:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 74541381 | 74545912 | 74541381 | ID=Msa0521620;Name=Msa0521620 |
| chr3_4 | mRNA | 74541381 | 74545912 | 74541381 | ID=Msa0521620-mRNA-1;Parent=Msa0521620;Name=Msa0521620-mRNA-1;_AED=0.28;_eAED=0.28;_QI=425|0.9|1|1|0.9|0.81|11|412|442 |
| chr3_4 | exon | 74541381 | 74542021 | 74541381 | ID=Msa0521620-mRNA-1:exon:21089;Parent=Msa0521620-mRNA-1 |
| chr3_4 | exon | 74542238 | 74542397 | 74542238 | ID=Msa0521620-mRNA-1:exon:21090;Parent=Msa0521620-mRNA-1 |
| chr3_4 | exon | 74543469 | 74543669 | 74543469 | ID=Msa0521620-mRNA-1:exon:21091;Parent=Msa0521620-mRNA-1 |
| chr3_4 | exon | 74543768 | 74543832 | 74543768 | ID=Msa0521620-mRNA-1:exon:21092;Parent=Msa0521620-mRNA-1 |
| chr3_4 | exon | 74543992 | 74544019 | 74543992 | ID=Msa0521620-mRNA-1:exon:21093;Parent=Msa0521620-mRNA-1 |
| chr3_4 | exon | 74544114 | 74544175 | 74544114 | ID=Msa0521620-mRNA-1:exon:21094;Parent=Msa0521620-mRNA-1 |
| chr3_4 | exon | 74544526 | 74544579 | 74544526 | ID=Msa0521620-mRNA-1:exon:21095;Parent=Msa0521620-mRNA-1 |
| chr3_4 | exon | 74544730 | 74544951 | 74544730 | ID=Msa0521620-mRNA-1:exon:21096;Parent=Msa0521620-mRNA-1 |
| chr3_4 | exon | 74545053 | 74545146 | 74545053 | ID=Msa0521620-mRNA-1:exon:21097;Parent=Msa0521620-mRNA-1 |
| chr3_4 | exon | 74545253 | 74545484 | 74545253 | ID=Msa0521620-mRNA-1:exon:21098;Parent=Msa0521620-mRNA-1 |
| chr3_4 | exon | 74545506 | 74545912 | 74545506 | ID=Msa0521620-mRNA-1:exon:21099;Parent=Msa0521620-mRNA-1 |
| chr3_4 | five_prime_UTR | 74541381 | 74541805 | 74541381 | ID=Msa0521620-mRNA-1:five_prime_utr;Parent=Msa0521620-mRNA-1 |
| chr3_4 | CDS | 74541806 | 74542021 | 74541806 | ID=Msa0521620-mRNA-1:cds;Parent=Msa0521620-mRNA-1 |
| chr3_4 | CDS | 74542238 | 74542397 | 74542238 | ID=Msa0521620-mRNA-1:cds;Parent=Msa0521620-mRNA-1 |
| chr3_4 | CDS | 74543469 | 74543669 | 74543469 | ID=Msa0521620-mRNA-1:cds;Parent=Msa0521620-mRNA-1 |
| chr3_4 | CDS | 74543768 | 74543832 | 74543768 | ID=Msa0521620-mRNA-1:cds;Parent=Msa0521620-mRNA-1 |
| chr3_4 | CDS | 74543992 | 74544019 | 74543992 | ID=Msa0521620-mRNA-1:cds;Parent=Msa0521620-mRNA-1 |
| chr3_4 | CDS | 74544114 | 74544175 | 74544114 | ID=Msa0521620-mRNA-1:cds;Parent=Msa0521620-mRNA-1 |
| chr3_4 | CDS | 74544526 | 74544579 | 74544526 | ID=Msa0521620-mRNA-1:cds;Parent=Msa0521620-mRNA-1 |
| chr3_4 | CDS | 74544730 | 74544951 | 74544730 | ID=Msa0521620-mRNA-1:cds;Parent=Msa0521620-mRNA-1 |
| chr3_4 | CDS | 74545053 | 74545146 | 74545053 | ID=Msa0521620-mRNA-1:cds;Parent=Msa0521620-mRNA-1 |
| chr3_4 | CDS | 74545253 | 74545479 | 74545253 | ID=Msa0521620-mRNA-1:cds;Parent=Msa0521620-mRNA-1 |
| chr3_4 | three_prime_UTR | 74545480 | 74545484 | 74545480 | ID=Msa0521620-mRNA-1:three_prime_utr;Parent=Msa0521620-mRNA-1 |
| chr3_4 | three_prime_UTR | 74545506 | 74545912 | 74545506 | ID=Msa0521620-mRNA-1:three_prime_utr;Parent=Msa0521620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
