Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222040 | XP_024637162.1 | 94.505 | 182 | 8 | 2 | 1 | 182 | 1 | 180 | 6.26e-121 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373110 | Msa1222040 | 0.804115 | 2.522170e-49 | -8.615850e-47 |
| Msa0373420 | Msa1222040 | 0.803745 | 3.011221e-49 | -8.615850e-47 |
| Msa0421480 | Msa1222040 | 0.801100 | 1.055647e-48 | -8.615850e-47 |
| Msa0467480 | Msa1222040 | 0.831345 | 1.759211e-55 | -8.615850e-47 |
| Msa1221500 | Msa1222040 | 0.992729 | 4.507434e-195 | -8.615850e-47 |
| Msa1222040 | Msa1445040 | -0.806033 | 1.001090e-49 | -8.615850e-47 |
| Msa0524730 | Msa1222040 | 0.802385 | 5.751999e-49 | -8.615850e-47 |
| Msa0906310 | Msa1222040 | 0.811131 | 8.161949e-51 | -8.615850e-47 |
| Msa0975460 | Msa1222040 | 0.807056 | 6.089879e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222040 | MtrunA17_Chr4g0073221 | 94.505 | 182 | 8 | 2 | 1 | 182 | 1 | 180 | 5.76e-125 | 349 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTTCCTTATCATTTCT+TGG | 0.158331 | 8_1:+86231944 | None:intergenic |
| CATAGTTGATGGAATCATTT+TGG | 0.169533 | 8_1:-86231408 | Msa1222040:exon |
| AAAAGAGAGGCACTGGTTTA+AGG | 0.190542 | 8_1:-86232978 | Msa1222040:CDS |
| TTTCCGCTGCGCTTATTAAT+TGG | 0.228675 | 8_1:+86233224 | None:intergenic |
| TTTGTATTGTAAACTTATTT+TGG | 0.274568 | 8_1:-86231255 | Msa1222040:three_prime_UTR |
| CTAAATTGCAGAACCTTTGC+AGG | 0.304960 | 8_1:-86231968 | Msa1222040:intron |
| ATAGAATATAATAACCTATA+CGG | 0.309711 | 8_1:-86231371 | Msa1222040:three_prime_UTR |
| CAACCAACAAGCTGATGATT+TGG | 0.322790 | 8_1:-86231890 | Msa1222040:CDS |
| AGATGTGTGTTTGAGGAATA+TGG | 0.344846 | 8_1:+86231842 | None:intergenic |
| ATTTGGAAAATTTGAACAAA+AGG | 0.378564 | 8_1:-86231873 | Msa1222040:CDS |
| TCTCCTCAACCCTCTGGCTC+TGG | 0.381273 | 8_1:-86233134 | Msa1222040:CDS |
| TTGAAGTTGTCCGACAAGTT+TGG | 0.396601 | 8_1:+86231770 | None:intergenic |
| TTTCCAAATCATCAGCTTGT+TGG | 0.398691 | 8_1:+86231887 | None:intergenic |
| TAAGGAGTATCTCAAATCTC+AGG | 0.410718 | 8_1:-86232960 | Msa1222040:CDS |
| TTTGAAACCTTTGAAGTTGT+TGG | 0.421383 | 8_1:+86233100 | None:intergenic |
| ATAAGGAAAGATGTTTCAAC+TGG | 0.421549 | 8_1:-86231934 | Msa1222040:CDS |
| AGTTTACAATACAAATTTGT+CGG | 0.426331 | 8_1:+86231263 | None:intergenic |
| CGATCAGAGATGTGTGTTTG+AGG | 0.434499 | 8_1:+86231835 | None:intergenic |
| GAAAGTGGAAGCTCAATAAC+AGG | 0.437471 | 8_1:+86232923 | None:intergenic |
| TTGAAACCTTTGAAGTTGTT+GGG | 0.441400 | 8_1:+86233101 | None:intergenic |
| TGATGAGAGCTCATAGTTGA+TGG | 0.447746 | 8_1:-86231419 | Msa1222040:exon |
| CTTCTTTCTCCTCAACCCTC+TGG | 0.450020 | 8_1:-86233140 | Msa1222040:CDS |
| CCATCACCCAACAACTTCAA+AGG | 0.455131 | 8_1:-86233107 | Msa1222040:intron |
| TAGAATATAATAACCTATAC+GGG | 0.458221 | 8_1:-86231370 | Msa1222040:three_prime_UTR |
| TGCAGGACCAAGAAATGATA+AGG | 0.469946 | 8_1:-86231951 | Msa1222040:CDS |
| CCTTTGAAGTTGTTGGGTGA+TGG | 0.474376 | 8_1:+86233107 | None:intergenic |
| CATCTCTGATCGCGTTACTC+AGG | 0.475344 | 8_1:-86231824 | Msa1222040:CDS |
| AAACCAGAGCCAGAGGGTTG+AGG | 0.485771 | 8_1:+86233131 | None:intergenic |
| CCTAAAACAACACCCCGTAT+AGG | 0.488150 | 8_1:+86231357 | None:intergenic |
| ATCATTTCTTGGTCCTGCAA+AGG | 0.488339 | 8_1:+86231955 | None:intergenic |
| AACCTATAAAAGAGAGGCAC+TGG | 0.490418 | 8_1:-86232985 | Msa1222040:CDS |
| TCGCGTTACTCAGGGACAAA+AGG | 0.514346 | 8_1:-86231815 | Msa1222040:CDS |
| ACACCGTGTACCAAACTTGT+CGG | 0.523677 | 8_1:-86231780 | Msa1222040:CDS |
| CTCTCATCAGCTGTGCGTTG+AGG | 0.535770 | 8_1:+86231433 | None:intergenic |
| TACCTACCTTGAGTTGAAAG+TGG | 0.539797 | 8_1:+86232908 | None:intergenic |
| ATCTCTGATCGCGTTACTCA+GGG | 0.556344 | 8_1:-86231823 | Msa1222040:CDS |
| GAGCTTCCACTTTCAACTCA+AGG | 0.587387 | 8_1:-86232914 | Msa1222040:intron |
| AAGGAGTATCTCAAATCTCA+GGG | 0.605928 | 8_1:-86232959 | Msa1222040:CDS |
| GAGGGTTGAGGAGAAAGAAG+AGG | 0.618199 | 8_1:+86233143 | None:intergenic |
| GCGCAGCGGAAAGAAACCAT+TGG | 0.621480 | 8_1:-86233213 | Msa1222040:CDS |
| TGATGGAAAACCAGAGCCAG+AGG | 0.641831 | 8_1:+86233124 | None:intergenic |
| TGTCCGACAAGTTTGGTACA+CGG | 0.684798 | 8_1:+86231777 | None:intergenic |
| GATGGAAAACCAGAGCCAGA+GGG | 0.688074 | 8_1:+86233125 | None:intergenic |
| AAACCAATTAATAAGCGCAG+CGG | 0.695563 | 8_1:-86233227 | Msa1222040:CDS |
| AGAATATAATAACCTATACG+GGG | 0.782218 | 8_1:-86231369 | Msa1222040:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCTTGATAAAATCTAA+GGG | - | chr8_1:86232142-86232161 | Msa1222040:intron | 15.0% |
| !!! | TATAATTTTCAATGTCATAT+AGG | + | chr8_1:86232341-86232360 | None:intergenic | 15.0% |
| !! | AAAATTAGATTCAATGTTAA+TGG | - | chr8_1:86232875-86232894 | Msa1222040:intron | 15.0% |
| !!! | TAATTAAGAATTATTTTGGA+TGG | - | chr8_1:86233037-86233056 | Msa1222040:intron | 15.0% |
| !! | ATAGAATATAATAACCTATA+CGG | - | chr8_1:86233163-86233182 | Msa1222040:CDS | 15.0% |
| !!! | TTTGTATTGTAAACTTATTT+TGG | - | chr8_1:86233279-86233298 | Msa1222040:exon | 15.0% |
| !! | AATTTCTTGATAAAATCTAA+GGG | - | chr8_1:86232142-86232161 | Msa1222040:intron | 15.0% |
| !!! | TATAATTTTCAATGTCATAT+AGG | + | chr8_1:86232341-86232360 | None:intergenic | 15.0% |
| !! | AAAATTAGATTCAATGTTAA+TGG | - | chr8_1:86232875-86232894 | Msa1222040:intron | 15.0% |
| !!! | TAATTAAGAATTATTTTGGA+TGG | - | chr8_1:86233037-86233056 | Msa1222040:intron | 15.0% |
| !! | ATAGAATATAATAACCTATA+CGG | - | chr8_1:86233163-86233182 | Msa1222040:CDS | 15.0% |
| !!! | TTTGTATTGTAAACTTATTT+TGG | - | chr8_1:86233279-86233298 | Msa1222040:exon | 15.0% |
| !!! | TTCTACTTTAATTGTTGTTA+TGG | - | chr8_1:86231671-86231690 | Msa1222040:intron | 20.0% |
| !!! | TTTAATTGTTGTTATGGATA+TGG | - | chr8_1:86231677-86231696 | Msa1222040:intron | 20.0% |
| !!! | GTGTATAATCATTTGTTAAT+TGG | - | chr8_1:86231805-86231824 | Msa1222040:CDS | 20.0% |
| !!! | AGAGACAATTTTAAAAGAAA+TGG | - | chr8_1:86231840-86231859 | Msa1222040:CDS | 20.0% |
| !! | CAATTTCTTGATAAAATCTA+AGG | - | chr8_1:86232141-86232160 | Msa1222040:intron | 20.0% |
| !!! | TTTAATTTACTCGTTCATAT+TGG | + | chr8_1:86232255-86232274 | None:intergenic | 20.0% |
| !!! | CTATATACACTAAATCTTTT+GGG | + | chr8_1:86232318-86232337 | None:intergenic | 20.0% |
| !!! | TTTTATGTTTCTTCTCAAAT+AGG | + | chr8_1:86232491-86232510 | None:intergenic | 20.0% |
| !! | TTTAGCAGAAATGAATAATT+AGG | + | chr8_1:86232551-86232570 | None:intergenic | 20.0% |
| !! | ATTTGGAAAATTTGAACAAA+AGG | - | chr8_1:86232661-86232680 | Msa1222040:intron | 20.0% |
| !! | TAGAATATAATAACCTATAC+GGG | - | chr8_1:86233164-86233183 | Msa1222040:CDS | 20.0% |
| !! | AGTTTACAATACAAATTTGT+CGG | + | chr8_1:86233274-86233293 | None:intergenic | 20.0% |
| !!! | TTCTACTTTAATTGTTGTTA+TGG | - | chr8_1:86231671-86231690 | Msa1222040:intron | 20.0% |
| !!! | TTTAATTGTTGTTATGGATA+TGG | - | chr8_1:86231677-86231696 | Msa1222040:intron | 20.0% |
| !!! | GTGTATAATCATTTGTTAAT+TGG | - | chr8_1:86231805-86231824 | Msa1222040:CDS | 20.0% |
| !!! | AGAGACAATTTTAAAAGAAA+TGG | - | chr8_1:86231840-86231859 | Msa1222040:CDS | 20.0% |
| !! | CAATTTCTTGATAAAATCTA+AGG | - | chr8_1:86232141-86232160 | Msa1222040:intron | 20.0% |
| !!! | TTTAATTTACTCGTTCATAT+TGG | + | chr8_1:86232255-86232274 | None:intergenic | 20.0% |
| !!! | CTATATACACTAAATCTTTT+GGG | + | chr8_1:86232318-86232337 | None:intergenic | 20.0% |
| !!! | TTTTATGTTTCTTCTCAAAT+AGG | + | chr8_1:86232491-86232510 | None:intergenic | 20.0% |
| !! | TTTAGCAGAAATGAATAATT+AGG | + | chr8_1:86232551-86232570 | None:intergenic | 20.0% |
| !! | ATTTGGAAAATTTGAACAAA+AGG | - | chr8_1:86232661-86232680 | Msa1222040:intron | 20.0% |
| !! | TAGAATATAATAACCTATAC+GGG | - | chr8_1:86233164-86233183 | Msa1222040:CDS | 20.0% |
| !! | AGTTTACAATACAAATTTGT+CGG | + | chr8_1:86233274-86233293 | None:intergenic | 20.0% |
| ! | AATTGAAAAAGAAGCAATGA+AGG | + | chr8_1:86231488-86231507 | None:intergenic | 25.0% |
| !!! | TTCATTGCTTCTTTTTCAAT+TGG | - | chr8_1:86231487-86231506 | Msa1222040:intron | 25.0% |
| !!! | TCATTGCTTCTTTTTCAATT+GGG | - | chr8_1:86231488-86231507 | Msa1222040:intron | 25.0% |
| !!! | TAATTTGTTTATGATCACAG+TGG | - | chr8_1:86231514-86231533 | Msa1222040:intron | 25.0% |
| ! | TGAAAAAACCTATAAAAGAG+AGG | - | chr8_1:86231543-86231562 | Msa1222040:intron | 25.0% |
| ! | TAAAGATTATGTTAGCATTG+AGG | - | chr8_1:86231762-86231781 | Msa1222040:intron | 25.0% |
| !!! | GACAATTTTAAAAGAAATGG+TGG | - | chr8_1:86231843-86231862 | Msa1222040:CDS | 25.0% |
| ! | AAAAGTTGAATCATTGAGTA+AGG | - | chr8_1:86232287-86232306 | Msa1222040:intron | 25.0% |
| !! | GCTATATACACTAAATCTTT+TGG | + | chr8_1:86232319-86232338 | None:intergenic | 25.0% |
| !! | ATTTTACTGATACTATGTTG+TGG | - | chr8_1:86232410-86232429 | Msa1222040:intron | 25.0% |
| ! | AGAATATAATAACCTATACG+GGG | - | chr8_1:86233165-86233184 | Msa1222040:CDS | 25.0% |
| !! | TATCATCTTTGTCTTTTGAT+AGG | - | chr8_1:86233239-86233258 | Msa1222040:CDS | 25.0% |
| ! | AATTGAAAAAGAAGCAATGA+AGG | + | chr8_1:86231488-86231507 | None:intergenic | 25.0% |
| !!! | TTCATTGCTTCTTTTTCAAT+TGG | - | chr8_1:86231487-86231506 | Msa1222040:intron | 25.0% |
| !!! | TCATTGCTTCTTTTTCAATT+GGG | - | chr8_1:86231488-86231507 | Msa1222040:intron | 25.0% |
| !!! | TAATTTGTTTATGATCACAG+TGG | - | chr8_1:86231514-86231533 | Msa1222040:intron | 25.0% |
| ! | TGAAAAAACCTATAAAAGAG+AGG | - | chr8_1:86231543-86231562 | Msa1222040:intron | 25.0% |
| ! | TAAAGATTATGTTAGCATTG+AGG | - | chr8_1:86231762-86231781 | Msa1222040:intron | 25.0% |
| !!! | GACAATTTTAAAAGAAATGG+TGG | - | chr8_1:86231843-86231862 | Msa1222040:CDS | 25.0% |
| ! | AAAAGTTGAATCATTGAGTA+AGG | - | chr8_1:86232287-86232306 | Msa1222040:intron | 25.0% |
| !! | GCTATATACACTAAATCTTT+TGG | + | chr8_1:86232319-86232338 | None:intergenic | 25.0% |
| !! | ATTTTACTGATACTATGTTG+TGG | - | chr8_1:86232410-86232429 | Msa1222040:intron | 25.0% |
| ! | AGAATATAATAACCTATACG+GGG | - | chr8_1:86233165-86233184 | Msa1222040:CDS | 25.0% |
| !! | TATCATCTTTGTCTTTTGAT+AGG | - | chr8_1:86233239-86233258 | Msa1222040:CDS | 25.0% |
| GAAGAAGAAGAAGAAGAAAA+TGG | - | chr8_1:86231249-86231268 | Msa1222040:three_prime_UTR | 30.0% | |
| !! | TTGAAACCTTTGAAGTTGTT+GGG | + | chr8_1:86231436-86231455 | None:intergenic | 30.0% |
| !! | TTTGAAACCTTTGAAGTTGT+TGG | + | chr8_1:86231437-86231456 | None:intergenic | 30.0% |
| ! | TTATGTTAGCATTGAGGATT+TGG | - | chr8_1:86231768-86231787 | Msa1222040:CDS | 30.0% |
| ! | CATTTGTTAATTGGATGCTA+AGG | - | chr8_1:86231814-86231833 | Msa1222040:CDS | 30.0% |
| TACCAATATGCTAGAAAAGA+GGG | + | chr8_1:86231934-86231953 | None:intergenic | 30.0% | |
| GAGACTTGAGTATAAACAAA+TGG | - | chr8_1:86231965-86231984 | Msa1222040:intron | 30.0% | |
| AGAAAGATTCAAGAATGACA+TGG | - | chr8_1:86232019-86232038 | Msa1222040:intron | 30.0% | |
| AGAAAGATTCAAGAATGACA+TGG | + | chr8_1:86232019-86232038 | None:intergenic | 30.0% | |
| CATCTTTCCTTATCATTTCT+TGG | + | chr8_1:86232593-86232612 | None:intergenic | 30.0% | |
| ATAAGGAAAGATGTTTCAAC+TGG | - | chr8_1:86232600-86232619 | Msa1222040:intron | 30.0% | |
| ATGGTAGACACAATATACTA+TGG | - | chr8_1:86232894-86232913 | Msa1222040:intron | 30.0% | |
| !!! | AGATTTTTTTGTCCTTCTGA+TGG | - | chr8_1:86232925-86232944 | Msa1222040:CDS | 30.0% |
| ! | AGGAAACTTGATCATTTTGA+TGG | - | chr8_1:86232963-86232982 | Msa1222040:CDS | 30.0% |
| TACTTCTATATATATGCTGC+AGG | - | chr8_1:86233069-86233088 | Msa1222040:intron | 30.0% | |
| !!! | CATAGTTGATGGAATCATTT+TGG | - | chr8_1:86233126-86233145 | Msa1222040:CDS | 30.0% |
| TTTACATGCAATGTGTAAGT+TGG | - | chr8_1:86233307-86233326 | Msa1222040:five_prime_UTR | 30.0% | |
| GAAGAAGAAGAAGAAGAAAA+TGG | - | chr8_1:86231249-86231268 | Msa1222040:three_prime_UTR | 30.0% | |
| !! | TTGAAACCTTTGAAGTTGTT+GGG | + | chr8_1:86231436-86231455 | None:intergenic | 30.0% |
| !! | TTTGAAACCTTTGAAGTTGT+TGG | + | chr8_1:86231437-86231456 | None:intergenic | 30.0% |
| ! | TTATGTTAGCATTGAGGATT+TGG | - | chr8_1:86231768-86231787 | Msa1222040:CDS | 30.0% |
| ! | CATTTGTTAATTGGATGCTA+AGG | - | chr8_1:86231814-86231833 | Msa1222040:CDS | 30.0% |
| TACCAATATGCTAGAAAAGA+GGG | + | chr8_1:86231934-86231953 | None:intergenic | 30.0% | |
| GAGACTTGAGTATAAACAAA+TGG | - | chr8_1:86231965-86231984 | Msa1222040:intron | 30.0% | |
| AGAAAGATTCAAGAATGACA+TGG | - | chr8_1:86232019-86232038 | Msa1222040:intron | 30.0% | |
| AGAAAGATTCAAGAATGACA+TGG | + | chr8_1:86232019-86232038 | None:intergenic | 30.0% | |
| CATCTTTCCTTATCATTTCT+TGG | + | chr8_1:86232593-86232612 | None:intergenic | 30.0% | |
| ATAAGGAAAGATGTTTCAAC+TGG | - | chr8_1:86232600-86232619 | Msa1222040:intron | 30.0% | |
| ATGGTAGACACAATATACTA+TGG | - | chr8_1:86232894-86232913 | Msa1222040:intron | 30.0% | |
| !!! | AGATTTTTTTGTCCTTCTGA+TGG | - | chr8_1:86232925-86232944 | Msa1222040:CDS | 30.0% |
| ! | AGGAAACTTGATCATTTTGA+TGG | - | chr8_1:86232963-86232982 | Msa1222040:CDS | 30.0% |
| TACTTCTATATATATGCTGC+AGG | - | chr8_1:86233069-86233088 | Msa1222040:intron | 30.0% | |
| !!! | CATAGTTGATGGAATCATTT+TGG | - | chr8_1:86233126-86233145 | Msa1222040:CDS | 30.0% |
| AAACCAATTAATAAGCGCAG+CGG | - | chr8_1:86231307-86231326 | Msa1222040:three_prime_UTR | 35.0% | |
| ! | ACCATTGGTGAAGAAGTTTT+TGG | - | chr8_1:86231336-86231355 | Msa1222040:three_prime_UTR | 35.0% |
| TCCAAAAACTTCTTCACCAA+TGG | + | chr8_1:86231340-86231359 | None:intergenic | 35.0% | |
| TTTGTTTATGATCACAGTGG+TGG | - | chr8_1:86231517-86231536 | Msa1222040:intron | 35.0% | |
| !! | TAAGGAGTATCTCAAATCTC+AGG | - | chr8_1:86231574-86231593 | Msa1222040:intron | 35.0% |
| !! | AAGGAGTATCTCAAATCTCA+GGG | - | chr8_1:86231575-86231594 | Msa1222040:intron | 35.0% |
| ! | AGCATTGAGGATTTGGAATT+AGG | - | chr8_1:86231775-86231794 | Msa1222040:CDS | 35.0% |
| ! | GAGGATTTGGAATTAGGAAA+AGG | - | chr8_1:86231781-86231800 | Msa1222040:CDS | 35.0% |
| !! | AACCCTCTTTTCTAGCATAT+TGG | - | chr8_1:86231929-86231948 | Msa1222040:CDS | 35.0% |
| CTACCAATATGCTAGAAAAG+AGG | + | chr8_1:86231935-86231954 | None:intergenic | 35.0% | |
| !! | GCATATTGGTAGCTTTATGT+TGG | - | chr8_1:86231943-86231962 | Msa1222040:CDS | 35.0% |
| ACTCGTTCATATTGGACTAT+TGG | + | chr8_1:86232247-86232266 | None:intergenic | 35.0% | |
| TTACTGATACTATGTTGTGG+AGG | - | chr8_1:86232413-86232432 | Msa1222040:intron | 35.0% | |
| TTTCCAAATCATCAGCTTGT+TGG | + | chr8_1:86232650-86232669 | None:intergenic | 35.0% | |
| AGATGTGTGTTTGAGGAATA+TGG | + | chr8_1:86232695-86232714 | None:intergenic | 35.0% | |
| ! | TTCCAAGTTGACTTAGCATA+AGG | - | chr8_1:86232997-86233016 | Msa1222040:CDS | 35.0% |
| TTCCTTATGCTAAGTCAACT+TGG | + | chr8_1:86233002-86233021 | None:intergenic | 35.0% | |
| AAACCAATTAATAAGCGCAG+CGG | - | chr8_1:86231307-86231326 | Msa1222040:three_prime_UTR | 35.0% | |
| ! | ACCATTGGTGAAGAAGTTTT+TGG | - | chr8_1:86231336-86231355 | Msa1222040:three_prime_UTR | 35.0% |
| TCCAAAAACTTCTTCACCAA+TGG | + | chr8_1:86231340-86231359 | None:intergenic | 35.0% | |
| TTTGTTTATGATCACAGTGG+TGG | - | chr8_1:86231517-86231536 | Msa1222040:intron | 35.0% | |
| !! | TAAGGAGTATCTCAAATCTC+AGG | - | chr8_1:86231574-86231593 | Msa1222040:intron | 35.0% |
| !! | AAGGAGTATCTCAAATCTCA+GGG | - | chr8_1:86231575-86231594 | Msa1222040:intron | 35.0% |
| ! | AGCATTGAGGATTTGGAATT+AGG | - | chr8_1:86231775-86231794 | Msa1222040:CDS | 35.0% |
| ! | GAGGATTTGGAATTAGGAAA+AGG | - | chr8_1:86231781-86231800 | Msa1222040:CDS | 35.0% |
| !! | AACCCTCTTTTCTAGCATAT+TGG | - | chr8_1:86231929-86231948 | Msa1222040:CDS | 35.0% |
| CTACCAATATGCTAGAAAAG+AGG | + | chr8_1:86231935-86231954 | None:intergenic | 35.0% | |
| !! | GCATATTGGTAGCTTTATGT+TGG | - | chr8_1:86231943-86231962 | Msa1222040:CDS | 35.0% |
| ACTCGTTCATATTGGACTAT+TGG | + | chr8_1:86232247-86232266 | None:intergenic | 35.0% | |
| TTACTGATACTATGTTGTGG+AGG | - | chr8_1:86232413-86232432 | Msa1222040:intron | 35.0% | |
| TTTCCAAATCATCAGCTTGT+TGG | + | chr8_1:86232650-86232669 | None:intergenic | 35.0% | |
| AGATGTGTGTTTGAGGAATA+TGG | + | chr8_1:86232695-86232714 | None:intergenic | 35.0% | |
| ! | TTCCAAGTTGACTTAGCATA+AGG | - | chr8_1:86232997-86233016 | Msa1222040:CDS | 35.0% |
| TTCCTTATGCTAAGTCAACT+TGG | + | chr8_1:86233002-86233021 | None:intergenic | 35.0% | |
| TTTCCGCTGCGCTTATTAAT+TGG | + | chr8_1:86231313-86231332 | None:intergenic | 40.0% | |
| ! | AACCTATAAAAGAGAGGCAC+TGG | - | chr8_1:86231549-86231568 | Msa1222040:intron | 40.0% |
| ! | AACCAGTGCCTCTCTTTTAT+AGG | + | chr8_1:86231554-86231573 | None:intergenic | 40.0% |
| !! | AAAAGAGAGGCACTGGTTTA+AGG | - | chr8_1:86231556-86231575 | Msa1222040:intron | 40.0% |
| GAAAGTGGAAGCTCAATAAC+AGG | + | chr8_1:86231614-86231633 | None:intergenic | 40.0% | |
| TTCCACTTTCAACTCAAGGT+AGG | - | chr8_1:86231624-86231643 | Msa1222040:intron | 40.0% | |
| !! | TACCTACCTTGAGTTGAAAG+TGG | + | chr8_1:86231629-86231648 | None:intergenic | 40.0% |
| TAGCTGCTGAATTTGTGTCA+TGG | - | chr8_1:86231731-86231750 | Msa1222040:intron | 40.0% | |
| AATCATGGTGCGGAAATCAT+GGG | + | chr8_1:86232079-86232098 | None:intergenic | 40.0% | |
| CAATAAAATCTCAGCCTGAC+CGG | + | chr8_1:86232102-86232121 | None:intergenic | 40.0% | |
| GTGAGACAAGGTAACAATGT+TGG | + | chr8_1:86232379-86232398 | None:intergenic | 40.0% | |
| TCATACGAAGAAGTGAGACA+AGG | + | chr8_1:86232391-86232410 | None:intergenic | 40.0% | |
| CTAAATTGCAGAACCTTTGC+AGG | - | chr8_1:86232566-86232585 | Msa1222040:intron | 40.0% | |
| ATCATTTCTTGGTCCTGCAA+AGG | + | chr8_1:86232582-86232601 | None:intergenic | 40.0% | |
| TGCAGGACCAAGAAATGATA+AGG | - | chr8_1:86232583-86232602 | Msa1222040:intron | 40.0% | |
| CAACCAACAAGCTGATGATT+TGG | - | chr8_1:86232644-86232663 | Msa1222040:intron | 40.0% | |
| TTGAAGTTGTCCGACAAGTT+TGG | + | chr8_1:86232767-86232786 | None:intergenic | 40.0% | |
| !! | TAGTCTTGTCTTCCATCAGA+AGG | + | chr8_1:86232940-86232959 | None:intergenic | 40.0% |
| GACTTAGCATAAGGAATCTG+AGG | - | chr8_1:86233006-86233025 | Msa1222040:intron | 40.0% | |
| TGATGAGAGCTCATAGTTGA+TGG | - | chr8_1:86233115-86233134 | Msa1222040:CDS | 40.0% | |
| TTTCCGCTGCGCTTATTAAT+TGG | + | chr8_1:86231313-86231332 | None:intergenic | 40.0% | |
| ! | AACCTATAAAAGAGAGGCAC+TGG | - | chr8_1:86231549-86231568 | Msa1222040:intron | 40.0% |
| ! | AACCAGTGCCTCTCTTTTAT+AGG | + | chr8_1:86231554-86231573 | None:intergenic | 40.0% |
| !! | AAAAGAGAGGCACTGGTTTA+AGG | - | chr8_1:86231556-86231575 | Msa1222040:intron | 40.0% |
| GAAAGTGGAAGCTCAATAAC+AGG | + | chr8_1:86231614-86231633 | None:intergenic | 40.0% | |
| TTCCACTTTCAACTCAAGGT+AGG | - | chr8_1:86231624-86231643 | Msa1222040:intron | 40.0% | |
| !! | TACCTACCTTGAGTTGAAAG+TGG | + | chr8_1:86231629-86231648 | None:intergenic | 40.0% |
| TAGCTGCTGAATTTGTGTCA+TGG | - | chr8_1:86231731-86231750 | Msa1222040:intron | 40.0% | |
| AATCATGGTGCGGAAATCAT+GGG | + | chr8_1:86232079-86232098 | None:intergenic | 40.0% | |
| CAATAAAATCTCAGCCTGAC+CGG | + | chr8_1:86232102-86232121 | None:intergenic | 40.0% | |
| GTGAGACAAGGTAACAATGT+TGG | + | chr8_1:86232379-86232398 | None:intergenic | 40.0% | |
| TCATACGAAGAAGTGAGACA+AGG | + | chr8_1:86232391-86232410 | None:intergenic | 40.0% | |
| CTAAATTGCAGAACCTTTGC+AGG | - | chr8_1:86232566-86232585 | Msa1222040:intron | 40.0% | |
| ATCATTTCTTGGTCCTGCAA+AGG | + | chr8_1:86232582-86232601 | None:intergenic | 40.0% | |
| TGCAGGACCAAGAAATGATA+AGG | - | chr8_1:86232583-86232602 | Msa1222040:intron | 40.0% | |
| CAACCAACAAGCTGATGATT+TGG | - | chr8_1:86232644-86232663 | Msa1222040:intron | 40.0% | |
| TTGAAGTTGTCCGACAAGTT+TGG | + | chr8_1:86232767-86232786 | None:intergenic | 40.0% | |
| !! | TAGTCTTGTCTTCCATCAGA+AGG | + | chr8_1:86232940-86232959 | None:intergenic | 40.0% |
| GACTTAGCATAAGGAATCTG+AGG | - | chr8_1:86233006-86233025 | Msa1222040:intron | 40.0% | |
| TGATGAGAGCTCATAGTTGA+TGG | - | chr8_1:86233115-86233134 | Msa1222040:CDS | 40.0% | |
| !! | CCTTTGAAGTTGTTGGGTGA+TGG | + | chr8_1:86231430-86231449 | None:intergenic | 45.0% |
| CCATCACCCAACAACTTCAA+AGG | - | chr8_1:86231427-86231446 | Msa1222040:CDS | 45.0% | |
| GAGCTTCCACTTTCAACTCA+AGG | - | chr8_1:86231620-86231639 | Msa1222040:intron | 45.0% | |
| ! | GTGGTGGGACTGAAATCTAA+GGG | + | chr8_1:86232056-86232075 | None:intergenic | 45.0% |
| ATCATGGTGCGGAAATCATG+GGG | + | chr8_1:86232078-86232097 | None:intergenic | 45.0% | |
| GAATCATGGTGCGGAAATCA+TGG | + | chr8_1:86232080-86232099 | None:intergenic | 45.0% | |
| TGATTTCCGCACCATGATTC+CGG | - | chr8_1:86232080-86232099 | Msa1222040:intron | 45.0% | |
| ! | CGGTCAGGCTGAGATTTTAT+TGG | - | chr8_1:86232100-86232119 | Msa1222040:intron | 45.0% |
| ! | TTGTGGAGGCATATAAACCG+TGG | - | chr8_1:86232427-86232446 | Msa1222040:intron | 45.0% |
| CGATCAGAGATGTGTGTTTG+AGG | + | chr8_1:86232702-86232721 | None:intergenic | 45.0% | |
| ATCTCTGATCGCGTTACTCA+GGG | - | chr8_1:86232711-86232730 | Msa1222040:intron | 45.0% | |
| ACACCGTGTACCAAACTTGT+CGG | - | chr8_1:86232754-86232773 | Msa1222040:intron | 45.0% | |
| TGTCCGACAAGTTTGGTACA+CGG | + | chr8_1:86232760-86232779 | None:intergenic | 45.0% | |
| ! | GATGGAAGACAAGACTAGCT+AGG | - | chr8_1:86232943-86232962 | Msa1222040:CDS | 45.0% |
| CCTAAAACAACACCCCGTAT+AGG | + | chr8_1:86233180-86233199 | None:intergenic | 45.0% | |
| !!! | CCTATACGGGGTGTTGTTTT+AGG | - | chr8_1:86233177-86233196 | Msa1222040:CDS | 45.0% |
| !! | CCTTTGAAGTTGTTGGGTGA+TGG | + | chr8_1:86231430-86231449 | None:intergenic | 45.0% |
| CCATCACCCAACAACTTCAA+AGG | - | chr8_1:86231427-86231446 | Msa1222040:CDS | 45.0% | |
| GAGCTTCCACTTTCAACTCA+AGG | - | chr8_1:86231620-86231639 | Msa1222040:intron | 45.0% | |
| ! | GTGGTGGGACTGAAATCTAA+GGG | + | chr8_1:86232056-86232075 | None:intergenic | 45.0% |
| ATCATGGTGCGGAAATCATG+GGG | + | chr8_1:86232078-86232097 | None:intergenic | 45.0% | |
| GAATCATGGTGCGGAAATCA+TGG | + | chr8_1:86232080-86232099 | None:intergenic | 45.0% | |
| TGATTTCCGCACCATGATTC+CGG | - | chr8_1:86232080-86232099 | Msa1222040:intron | 45.0% | |
| ! | CGGTCAGGCTGAGATTTTAT+TGG | - | chr8_1:86232100-86232119 | Msa1222040:intron | 45.0% |
| ! | TTGTGGAGGCATATAAACCG+TGG | - | chr8_1:86232427-86232446 | Msa1222040:intron | 45.0% |
| CGATCAGAGATGTGTGTTTG+AGG | + | chr8_1:86232702-86232721 | None:intergenic | 45.0% | |
| ATCTCTGATCGCGTTACTCA+GGG | - | chr8_1:86232711-86232730 | Msa1222040:intron | 45.0% | |
| ACACCGTGTACCAAACTTGT+CGG | - | chr8_1:86232754-86232773 | Msa1222040:intron | 45.0% | |
| TGTCCGACAAGTTTGGTACA+CGG | + | chr8_1:86232760-86232779 | None:intergenic | 45.0% | |
| ! | GATGGAAGACAAGACTAGCT+AGG | - | chr8_1:86232943-86232962 | Msa1222040:CDS | 45.0% |
| CCTAAAACAACACCCCGTAT+AGG | + | chr8_1:86233180-86233199 | None:intergenic | 45.0% | |
| !!! | CCTATACGGGGTGTTGTTTT+AGG | - | chr8_1:86233177-86233196 | Msa1222040:CDS | 45.0% |
| !!! | ATTTTAATTAAGAATTATTT+TGG | - | chr8_1:86233033-86233052 | Msa1222040:intron | 5.0% |
| !!! | ATTTTAATTAAGAATTATTT+TGG | - | chr8_1:86233033-86233052 | Msa1222040:intron | 5.0% |
| GAGGGTTGAGGAGAAAGAAG+AGG | + | chr8_1:86231394-86231413 | None:intergenic | 50.0% | |
| CTTCTTTCTCCTCAACCCTC+TGG | - | chr8_1:86231394-86231413 | Msa1222040:three_prime_UTR | 50.0% | |
| GATGGAAAACCAGAGCCAGA+GGG | + | chr8_1:86231412-86231431 | None:intergenic | 50.0% | |
| TGATGGAAAACCAGAGCCAG+AGG | + | chr8_1:86231413-86231432 | None:intergenic | 50.0% | |
| !! | GGTGGTGGGACTGAAATCTA+AGG | + | chr8_1:86232057-86232076 | None:intergenic | 50.0% |
| CATATAAACCGTGGCGCTCT+TGG | - | chr8_1:86232436-86232455 | Msa1222040:intron | 50.0% | |
| !! | ATCTATCACCAAGAGCGCCA+CGG | + | chr8_1:86232447-86232466 | None:intergenic | 50.0% |
| CATCTCTGATCGCGTTACTC+AGG | - | chr8_1:86232710-86232729 | Msa1222040:intron | 50.0% | |
| TCGCGTTACTCAGGGACAAA+AGG | - | chr8_1:86232719-86232738 | Msa1222040:intron | 50.0% | |
| GAGGGTTGAGGAGAAAGAAG+AGG | + | chr8_1:86231394-86231413 | None:intergenic | 50.0% | |
| CTTCTTTCTCCTCAACCCTC+TGG | - | chr8_1:86231394-86231413 | Msa1222040:three_prime_UTR | 50.0% | |
| GATGGAAAACCAGAGCCAGA+GGG | + | chr8_1:86231412-86231431 | None:intergenic | 50.0% | |
| TGATGGAAAACCAGAGCCAG+AGG | + | chr8_1:86231413-86231432 | None:intergenic | 50.0% | |
| !! | GGTGGTGGGACTGAAATCTA+AGG | + | chr8_1:86232057-86232076 | None:intergenic | 50.0% |
| CATATAAACCGTGGCGCTCT+TGG | - | chr8_1:86232436-86232455 | Msa1222040:intron | 50.0% | |
| !! | ATCTATCACCAAGAGCGCCA+CGG | + | chr8_1:86232447-86232466 | None:intergenic | 50.0% |
| CATCTCTGATCGCGTTACTC+AGG | - | chr8_1:86232710-86232729 | Msa1222040:intron | 50.0% | |
| TCGCGTTACTCAGGGACAAA+AGG | - | chr8_1:86232719-86232738 | Msa1222040:intron | 50.0% | |
| GCGCAGCGGAAAGAAACCAT+TGG | - | chr8_1:86231321-86231340 | Msa1222040:three_prime_UTR | 55.0% | |
| AAACCAGAGCCAGAGGGTTG+AGG | + | chr8_1:86231406-86231425 | None:intergenic | 55.0% | |
| TGCGGAAATCATGGGGTGGT+GGG | + | chr8_1:86232071-86232090 | None:intergenic | 55.0% | |
| ATGGTGCGGAAATCATGGGG+TGG | + | chr8_1:86232075-86232094 | None:intergenic | 55.0% | |
| TCTCAGCCTGACCGGAATCA+TGG | + | chr8_1:86232094-86232113 | None:intergenic | 55.0% | |
| CTCTCATCAGCTGTGCGTTG+AGG | + | chr8_1:86233104-86233123 | None:intergenic | 55.0% | |
| GCGCAGCGGAAAGAAACCAT+TGG | - | chr8_1:86231321-86231340 | Msa1222040:three_prime_UTR | 55.0% | |
| AAACCAGAGCCAGAGGGTTG+AGG | + | chr8_1:86231406-86231425 | None:intergenic | 55.0% | |
| TGCGGAAATCATGGGGTGGT+GGG | + | chr8_1:86232071-86232090 | None:intergenic | 55.0% | |
| ATGGTGCGGAAATCATGGGG+TGG | + | chr8_1:86232075-86232094 | None:intergenic | 55.0% | |
| TCTCAGCCTGACCGGAATCA+TGG | + | chr8_1:86232094-86232113 | None:intergenic | 55.0% | |
| CTCTCATCAGCTGTGCGTTG+AGG | + | chr8_1:86233104-86233123 | None:intergenic | 55.0% | |
| ! | TCTCCTCAACCCTCTGGCTC+TGG | - | chr8_1:86231400-86231419 | Msa1222040:three_prime_UTR | 60.0% |
| GTGCGGAAATCATGGGGTGG+TGG | + | chr8_1:86232072-86232091 | None:intergenic | 60.0% | |
| TCCGCACCATGATTCCGGTC+AGG | - | chr8_1:86232085-86232104 | Msa1222040:intron | 60.0% | |
| GCCTGACCGGAATCATGGTG+CGG | + | chr8_1:86232089-86232108 | None:intergenic | 60.0% | |
| ! | TCTCCTCAACCCTCTGGCTC+TGG | - | chr8_1:86231400-86231419 | Msa1222040:three_prime_UTR | 60.0% |
| GTGCGGAAATCATGGGGTGG+TGG | + | chr8_1:86232072-86232091 | None:intergenic | 60.0% | |
| TCCGCACCATGATTCCGGTC+AGG | - | chr8_1:86232085-86232104 | Msa1222040:intron | 60.0% | |
| GCCTGACCGGAATCATGGTG+CGG | + | chr8_1:86232089-86232108 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 86231228 | 86233328 | 86231228 | ID=Msa1222040;Name=Msa1222040 |
| chr8_1 | mRNA | 86231228 | 86233328 | 86231228 | ID=Msa1222040-mRNA-1;Parent=Msa1222040;Name=Msa1222040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=40|1|1|1|0.33|0.75|4|194|182 |
| chr8_1 | exon | 86231228 | 86231465 | 86231228 | ID=Msa1222040-mRNA-1:exon:30987;Parent=Msa1222040-mRNA-1 |
| chr8_1 | exon | 86231764 | 86231979 | 86231764 | ID=Msa1222040-mRNA-1:exon:30986;Parent=Msa1222040-mRNA-1 |
| chr8_1 | exon | 86232915 | 86233022 | 86232915 | ID=Msa1222040-mRNA-1:exon:30985;Parent=Msa1222040-mRNA-1 |
| chr8_1 | exon | 86233108 | 86233328 | 86233108 | ID=Msa1222040-mRNA-1:exon:30984;Parent=Msa1222040-mRNA-1 |
| chr8_1 | five_prime_UTR | 86233289 | 86233328 | 86233289 | ID=Msa1222040-mRNA-1:five_prime_utr;Parent=Msa1222040-mRNA-1 |
| chr8_1 | CDS | 86233108 | 86233288 | 86233108 | ID=Msa1222040-mRNA-1:cds;Parent=Msa1222040-mRNA-1 |
| chr8_1 | CDS | 86232915 | 86233022 | 86232915 | ID=Msa1222040-mRNA-1:cds;Parent=Msa1222040-mRNA-1 |
| chr8_1 | CDS | 86231764 | 86231979 | 86231764 | ID=Msa1222040-mRNA-1:cds;Parent=Msa1222040-mRNA-1 |
| chr8_1 | CDS | 86231422 | 86231465 | 86231422 | ID=Msa1222040-mRNA-1:cds;Parent=Msa1222040-mRNA-1 |
| chr8_1 | three_prime_UTR | 86231228 | 86231421 | 86231228 | ID=Msa1222040-mRNA-1:three_prime_utr;Parent=Msa1222040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
