AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373110 MtrunA17_Chr7g0214451 81.416 113 21 0 5 117 76 188 1.66e-51 169
Msa0373110 MtrunA17_Chr1g0213631 78.448 116 25 0 2 117 25 140 7.15e-49 162
Msa0373110 MtrunA17_Chr1g0213611 78.761 113 24 0 5 117 121 233 1.61e-48 162
Msa0373110 MtrunA17_Chr2g0303731 63.393 112 41 0 5 116 69 180 1.96e-42 146
Msa0373110 MtrunA17_Chr8g0376611 61.818 110 42 0 7 116 4 113 3.12e-42 145
Msa0373110 MtrunA17_Chr2g0290181 69.643 112 34 0 5 116 70 181 8.20e-41 142
Msa0373110 MtrunA17_Chr8g0376631 66.372 113 38 0 5 117 69 181 3.27e-38 135
Msa0373110 MtrunA17_Chr2g0303701 62.500 112 42 0 5 116 69 180 5.46e-35 126
Msa0373110 MtrunA17_Chr8g0376601 57.522 113 48 0 5 117 69 181 2.23e-31 116
Msa0373110 MtrunA17_Chr5g0434231 55.435 92 41 0 1 92 1 92 3.24e-30 105
Msa0373110 MtrunA17_Chr2g0290161 68.182 88 28 0 5 92 3 90 2.36e-27 104
Msa0373110 MtrunA17_Chr3g0144261 45.098 102 56 0 7 108 46 147 2.55e-21 88.2
Msa0373110 MtrunA17_Chr1g0155221 46.364 110 58 1 9 118 93 201 1.04e-20 86.3
Msa0373110 MtrunA17_Chr4g0032021 46.154 104 56 0 7 110 145 248 1.33e-20 85.9
Msa0373110 MtrunA17_Chr4g0021771 38.596 114 70 0 2 115 92 205 3.99e-18 79.0
Msa0373110 MtrunA17_Chr6g0457781 42.727 110 61 2 7 115 149 257 1.06e-17 77.8
Msa0373110 MtrunA17_Chr8g0373181 43.269 104 59 0 9 112 91 194 1.31e-17 77.4
Msa0373110 MtrunA17_Chr2g0282031 37.931 116 72 0 2 117 90 205 1.31e-17 77.4
Msa0373110 MtrunA17_Chr7g0250881 44.681 94 52 0 7 100 109 202 3.27e-17 76.3
Msa0373110 MtrunA17_Chr5g0404191 41.346 104 61 0 9 112 94 197 3.59e-17 75.1
Msa0373110 MtrunA17_Chr7g0273281 40.909 110 64 1 9 118 106 214 1.09e-16 74.7
Msa0373110 MtrunA17_Chr4g0039651 41.237 97 57 0 7 103 94 190 1.10e-16 74.7
Msa0373110 MtrunA17_Chr2g0286721 40.196 102 61 0 9 110 93 194 1.82e-16 73.9
Msa0373110 MtrunA17_Chr5g0432581 42.268 97 56 0 15 111 69 165 4.37e-16 73.2
Msa0373110 MtrunA17_Chr7g0273271 37.273 110 68 1 9 118 71 179 5.25e-16 70.9
Msa0373110 MtrunA17_Chr4g0066581 41.176 102 60 0 9 110 96 197 7.48e-16 72.4
Msa0373110 MtrunA17_Chr8g0390521 35.537 121 77 1 2 122 55 174 1.80e-15 71.2
Msa0373110 MtrunA17_Chr4g0034681 33.628 113 75 0 5 117 70 182 2.04e-15 71.2
Msa0373110 MtrunA17_Chr6g0485661 36.134 119 75 1 2 120 95 212 2.36e-15 70.9
Msa0373110 MtrunA17_Chr3g0146061 39.216 102 62 0 7 108 48 149 2.75e-15 70.9
Msa0373110 MtrunA17_Chr5g0417611 33.019 106 71 0 13 118 92 197 3.21e-15 70.5
Msa0373110 MtrunA17_Chr4g0036021 34.653 101 66 0 17 117 79 179 4.98e-15 70.1
Msa0373110 MtrunA17_Chr3g0144361 34.513 113 74 0 5 117 68 180 1.16e-14 68.9
Msa0373110 MtrunA17_Chr8g0373191 41.509 106 42 1 9 114 83 168 2.27e-14 68.2
Msa0373110 MtrunA17_Chr5g0407441 32.692 104 70 0 7 110 48 151 2.81e-14 67.8
Msa0373110 MtrunA17_Chr1g0205681 33.898 118 74 1 1 118 84 197 3.94e-14 67.4
Msa0373110 MtrunA17_Chr3g0128171 33.945 109 69 1 10 118 44 149 6.92e-14 66.6
Msa0373110 MtrunA17_Chr8g0373531 39.175 97 59 0 15 111 69 165 2.88e-13 65.1
Msa0373110 MtrunA17_Chr4g0065324 30.769 117 77 1 3 119 90 202 1.07e-12 63.5
Msa0373110 MtrunA17_Chr3g0128081 32.479 117 75 2 2 118 84 196 1.10e-12 63.2
Msa0373110 MtrunA17_Chr8g0370141 33.654 104 69 0 7 110 48 151 1.34e-12 63.2
Msa0373110 MtrunA17_Chr8g0390261 33.333 90 60 0 30 119 111 200 1.64e-12 62.8
Msa0373110 MtrunA17_Chr5g0445601 31.579 95 65 0 25 119 106 200 1.80e-12 62.8
Msa0373110 MtrunA17_Chr4g0004821 35.294 85 55 0 7 91 80 164 2.06e-12 62.4
Msa0373110 MtrunA17_Chr6g0486681 34.444 90 59 0 30 119 111 200 2.79e-12 62.0
Msa0373110 MtrunA17_Chr6g0486671 34.444 90 59 0 30 119 111 200 2.79e-12 62.0
Msa0373110 MtrunA17_Chr4g0065311 31.579 95 65 0 25 119 100 194 3.02e-12 62.0
Msa0373110 MtrunA17_Chr4g0048051 31.915 94 64 0 25 118 103 196 3.32e-12 62.0
Msa0373110 MtrunA17_Chr6g0486021 36.471 85 54 0 7 91 94 178 3.89e-12 61.6
Msa0373110 MtrunA17_Chr3g0078791 34.615 104 65 1 15 118 41 141 5.18e-12 61.2
Msa0373110 MtrunA17_Chr1g0164851 31.818 110 71 1 2 111 85 190 9.90e-12 60.5
Msa0373110 MtrunA17_Chr7g0257631 30.526 95 66 0 25 119 140 234 9.90e-12 60.5
Msa0373110 MtrunA17_Chr1g0164871 31.818 110 71 1 2 111 85 190 1.24e-11 60.5
Msa0373110 MtrunA17_Chr4g0048411 32.979 94 63 0 25 118 103 196 2.06e-11 59.7
Msa0373110 MtrunA17_Chr7g0259471 37.255 102 64 0 9 110 84 185 2.90e-11 59.3
Msa0373110 MtrunA17_Chr1g0205671 34.545 110 68 1 2 111 84 189 3.52e-11 58.9
Msa0373110 MtrunA17_Chr5g0419321 31.731 104 71 0 7 110 76 179 4.54e-11 58.9
Msa0373110 MtrunA17_Chr5g0437021 36.145 83 53 0 29 111 108 190 6.43e-11 58.2
Msa0373110 MtrunA17_Chr5g0446681 35.955 89 54 1 17 105 61 146 6.62e-11 57.8
Msa0373110 MtrunA17_Chr3g0085971 36.585 82 52 0 30 111 107 188 9.21e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373110 AT2G43330.1 84.956 113 17 0 5 117 74 186 2.74e-46 156
Msa0373110 AT2G35740.1 65.179 112 39 0 5 116 69 180 2.76e-42 146
Msa0373110 AT1G30220.1 64.602 113 40 0 5 117 71 183 2.19e-37 133
Msa0373110 AT4G16480.2 64.865 111 39 0 6 116 71 181 4.09e-36 130
Msa0373110 AT4G16480.3 64.865 111 39 0 6 116 71 181 4.09e-36 130
Msa0373110 AT4G16480.1 64.865 111 39 0 6 116 71 181 4.09e-36 130
Msa0373110 AT4G35300.4 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0373110 AT4G35300.8 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0373110 AT4G35300.6 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0373110 AT4G35300.11 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0373110 AT4G35300.1 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0373110 AT4G35300.10 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0373110 AT4G35300.7 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0373110 AT4G35300.9 42.157 102 59 0 7 108 48 149 2.13e-19 82.8
Msa0373110 AT4G35300.2 42.157 102 59 0 7 108 48 149 2.13e-19 82.8
Msa0373110 AT4G35300.3 42.157 102 59 0 7 108 48 149 2.13e-19 82.8
Msa0373110 AT5G59250.1 42.308 104 60 0 7 110 147 250 3.74e-19 82.4
Msa0373110 AT3G51490.1 42.157 102 59 0 7 108 48 149 4.45e-19 82.0
Msa0373110 AT3G51490.2 42.157 102 59 0 7 108 48 149 4.64e-19 82.0
Msa0373110 AT3G51490.3 41.414 99 58 0 10 108 1 99 4.63e-18 79.3
Msa0373110 AT1G20840.2 39.216 102 62 0 7 108 46 147 8.50e-18 78.6
Msa0373110 AT1G20840.1 39.216 102 62 0 7 108 46 147 8.50e-18 78.6
Msa0373110 AT5G16150.2 46.316 95 49 2 7 100 149 242 1.19e-17 77.8
Msa0373110 AT5G16150.1 46.316 95 49 2 7 100 149 242 1.19e-17 77.8
Msa0373110 AT5G16150.3 46.316 95 49 2 7 100 149 242 1.19e-17 77.8
Msa0373110 AT2G20780.2 43.564 101 57 0 15 115 47 147 2.69e-17 77.0
Msa0373110 AT2G20780.1 43.564 101 57 0 15 115 105 205 3.69e-17 76.6
Msa0373110 AT1G75220.1 43.269 104 59 0 9 112 92 195 3.78e-17 76.6
Msa0373110 AT1G19450.1 43.269 104 59 0 9 112 93 196 7.77e-17 75.5
Msa0373110 AT1G08930.1 41.176 102 60 0 9 110 102 203 6.44e-16 72.8
Msa0373110 AT1G08930.2 41.176 102 60 0 9 110 102 203 6.44e-16 72.8
Msa0373110 AT5G17010.1 42.268 97 56 0 7 103 96 192 8.31e-16 72.8
Msa0373110 AT5G17010.3 42.268 97 56 0 7 103 96 192 8.31e-16 72.8
Msa0373110 AT5G17010.4 42.268 97 56 0 7 103 96 192 8.31e-16 72.8
Msa0373110 AT5G17010.2 42.268 97 56 0 7 103 97 193 8.90e-16 72.4
Msa0373110 AT3G18830.1 38.835 103 63 0 15 117 86 188 1.71e-15 71.6
Msa0373110 AT2G18480.1 39.806 103 62 0 15 117 72 174 7.18e-15 70.1
Msa0373110 AT3G03090.1 38.614 101 58 1 7 103 96 196 1.44e-14 68.9
Msa0373110 AT4G36670.1 38.835 103 63 0 15 117 67 169 2.08e-14 68.6
Msa0373110 AT5G18840.1 36.434 129 70 2 9 125 88 216 5.09e-14 67.4
Msa0373110 AT1G08920.1 39.216 102 62 0 9 110 76 177 1.36e-13 66.2
Msa0373110 AT1G08920.2 39.216 102 62 0 9 110 76 177 1.42e-13 66.2
Msa0373110 AT1G08920.3 39.216 102 62 0 9 110 76 177 1.73e-13 65.9
Msa0373110 AT5G27360.3 37.624 101 63 0 9 109 127 227 2.64e-13 65.5
Msa0373110 AT5G27360.4 37.624 101 63 0 9 109 79 179 3.02e-13 65.5
Msa0373110 AT3G05150.1 36.667 120 69 1 13 125 83 202 3.60e-13 65.1
Msa0373110 AT3G05150.3 36.667 120 69 1 13 125 83 202 3.60e-13 65.1
Msa0373110 AT3G05150.2 36.667 120 69 1 13 125 83 202 3.69e-13 65.1
Msa0373110 AT5G27360.1 37.624 101 63 0 9 109 79 179 3.71e-13 65.1
Msa0373110 AT1G77210.2 33.333 96 64 0 24 119 105 200 4.17e-13 65.1
Msa0373110 AT1G77210.1 33.333 96 64 0 24 119 105 200 4.17e-13 65.1
Msa0373110 AT3G05165.6 36.082 97 62 0 13 109 78 174 4.47e-13 64.7
Msa0373110 AT3G05400.1 38.947 95 58 0 9 103 70 164 6.35e-13 64.3
Msa0373110 AT3G05165.4 36.082 97 62 0 13 109 78 174 7.58e-13 64.3
Msa0373110 AT3G05165.5 36.082 97 62 0 13 109 78 174 7.58e-13 64.3
Msa0373110 AT3G05165.3 36.082 97 62 0 13 109 78 174 8.27e-13 63.9
Msa0373110 AT3G05165.2 36.082 97 62 0 13 109 78 174 8.27e-13 63.9
Msa0373110 AT3G05165.1 36.082 97 62 0 13 109 78 174 8.27e-13 63.9
Msa0373110 AT1G50310.1 36.559 93 59 0 25 117 105 197 1.46e-12 63.5
Msa0373110 AT1G54730.10 38.235 102 63 0 9 110 76 177 1.90e-12 62.8
Msa0373110 AT1G54730.6 38.235 102 63 0 9 110 76 177 1.90e-12 62.8
Msa0373110 AT1G54730.8 38.235 102 63 0 9 110 76 177 2.35e-12 62.8
Msa0373110 AT1G54730.2 38.235 102 63 0 9 110 76 177 2.36e-12 62.8
Msa0373110 AT1G54730.9 38.235 102 63 0 9 110 76 177 2.59e-12 62.8
Msa0373110 AT1G54730.7 38.235 102 63 0 9 110 76 177 2.59e-12 62.8
Msa0373110 AT1G54730.5 38.235 102 63 0 9 110 76 177 2.60e-12 62.8
Msa0373110 AT1G54730.3 38.235 102 63 0 9 110 76 177 2.81e-12 62.4
Msa0373110 AT1G54730.11 38.235 102 63 0 9 110 76 177 2.82e-12 62.4
Msa0373110 AT1G54730.4 38.235 102 63 0 9 110 76 177 2.94e-12 62.4
Msa0373110 AT1G05030.2 38.372 86 53 0 7 92 71 156 2.95e-12 62.4
Msa0373110 AT3G20460.1 33.673 98 65 0 13 110 101 198 3.97e-12 62.0
Msa0373110 AT1G05030.1 38.372 86 53 0 7 92 123 208 4.06e-12 62.0
Msa0373110 AT2G16120.1 33.981 103 68 0 15 117 76 178 9.57e-12 61.2
Msa0373110 AT3G05155.1 38.947 95 58 0 9 103 71 165 1.55e-11 60.5
Msa0373110 AT3G05155.2 38.947 95 58 0 9 103 71 165 1.56e-11 60.1
Msa0373110 AT3G19940.1 37.931 87 54 0 25 111 105 191 2.75e-11 59.7
Msa0373110 AT5G26250.1 29.412 119 80 1 1 119 81 195 3.30e-11 59.7
Msa0373110 AT2G48020.3 36.275 102 65 0 9 110 72 173 3.43e-11 59.3
Msa0373110 AT2G48020.4 36.275 102 65 0 9 110 72 173 3.45e-11 59.3
Msa0373110 AT1G08890.1 37.895 95 59 0 9 103 71 165 3.55e-11 59.3
Msa0373110 AT3G05160.1 34.021 97 64 0 13 109 69 165 3.58e-11 59.3
Msa0373110 AT4G21480.1 30.476 105 73 0 13 117 91 195 3.60e-11 59.3
Msa0373110 AT2G48020.2 36.275 102 65 0 9 110 72 173 3.62e-11 59.3
Msa0373110 AT2G48020.1 36.275 102 65 0 9 110 72 173 3.62e-11 59.3
Msa0373110 AT3G05160.3 34.021 97 64 0 13 109 20 116 3.66e-11 59.3
Msa0373110 AT3G05160.2 34.021 97 64 0 13 109 20 116 3.66e-11 59.3
Msa0373110 AT1G11260.1 29.808 104 73 0 15 118 93 196 3.84e-11 59.3
Msa0373110 AT5G27350.1 34.653 101 66 0 9 109 75 175 4.77e-11 58.9
Msa0373110 AT4G04760.3 38.554 83 51 0 9 91 16 98 5.12e-11 58.9
Msa0373110 AT4G04760.1 38.554 83 51 0 9 91 75 157 6.14e-11 58.9
Msa0373110 AT1G08900.3 37.363 91 57 0 9 99 61 151 6.26e-11 58.5
Msa0373110 AT1G08900.5 37.363 91 57 0 9 99 27 117 6.72e-11 58.5
Msa0373110 AT4G04760.2 38.554 83 51 0 9 91 75 157 6.89e-11 58.5
Msa0373110 AT1G08900.4 37.363 91 57 0 9 99 69 159 7.32e-11 58.5
Msa0373110 AT1G08900.1 37.363 91 57 0 9 99 69 159 7.93e-11 58.5
Msa0373110 AT1G08900.2 37.363 91 57 0 9 99 69 159 7.93e-11 58.5
Msa0373110 AT2G16130.1 33.981 103 68 0 15 117 76 178 8.22e-11 58.5

Find 208 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCCTAATTTAGTGATTTA+TGG 0.074783 3_1:+72098073 Msa0373110:three_prime_UTR
TTCTTAATGAACTTGTTTAA+TGG 0.149554 3_1:+72098410 Msa0373110:three_prime_UTR
GAATCACCATGTACTCAAAT+TGG 0.177630 3_1:+72098798 Msa0373110:three_prime_UTR
TATGGGTGGTTAGCAATTAT+TGG 0.221949 3_1:+72100100 Msa0373110:three_prime_UTR
TATCGTTACAAAGACATTAT+TGG 0.223834 3_1:+72100602 Msa0373110:three_prime_UTR
CATATAGTTTAAGTCATTAA+AGG 0.241745 3_1:+72098739 Msa0373110:three_prime_UTR
TTTAATCTGGTTGGGAATAT+AGG 0.242155 3_1:+72098640 Msa0373110:three_prime_UTR
TGTCATAAGTGATAAACTTT+TGG 0.244195 3_1:+72097852 Msa0373110:three_prime_UTR
AGTTGTTAGCTGCCACATTA+TGG 0.246628 3_1:+72100544 Msa0373110:three_prime_UTR
CTGTCTCTCTTACATATAAA+AGG 0.248859 3_1:+72098127 Msa0373110:three_prime_UTR
GCATTGGTTGGTGCAATTAT+TGG 0.255758 3_1:+72097203 Msa0373110:CDS
ATTCCCATCAAGATATATAT+TGG 0.255970 3_1:+72098016 Msa0373110:three_prime_UTR
TACCTCTTTAAACTTCTAAA+TGG 0.263710 3_1:-72097671 None:intergenic
TAACCATAAATCACTAAATT+AGG 0.277820 3_1:-72098076 None:intergenic
AATCCTCACCATCAGAAATA+AGG 0.280399 3_1:+72097417 Msa0373110:CDS
TTGTATTGCTGTTACCTGTT+AGG 0.291991 3_1:+72098933 Msa0373110:three_prime_UTR
GGTGGTAGTTTCGTGATTCT+TGG 0.293372 3_1:+72100304 Msa0373110:three_prime_UTR
CTTTAATGACTTAAACTATA+TGG 0.295951 3_1:-72098738 None:intergenic
CAGATTCGCAAAGGATGGTT+TGG 0.300888 3_1:-72098246 None:intergenic
TTAGCCTTTCACTATGATAA+TGG 0.307196 3_1:-72098875 None:intergenic
TACTCTTGGATCAGTTGTTA+TGG 0.307618 3_1:+72097298 Msa0373110:CDS
ATAGTATGTAGGAATGTATC+TGG 0.312784 3_1:+72097629 Msa0373110:three_prime_UTR
CATGGCACCGGTCCCATTCC+TGG 0.314241 3_1:-72100151 None:intergenic
CTAAATTTGATACTTTAATC+TGG 0.315213 3_1:+72098627 Msa0373110:three_prime_UTR
GGTAATTGACTTCATCTTCT+AGG 0.316687 3_1:-72099288 None:intergenic
CTTCTATCTCTCATCGTTGC+TGG 0.319739 3_1:+72099923 Msa0373110:three_prime_UTR
TTATGCAATTTAAGCTCATT+TGG 0.320123 3_1:-72098483 None:intergenic
TTTGTGAGCTGCAGTATTAT+TGG 0.321156 3_1:+72100489 Msa0373110:three_prime_UTR
ATTGCTTATTTCATATTTGC+TGG 0.322622 3_1:+72097955 Msa0373110:three_prime_UTR
AACGCTGCTGGAACAATTCT+TGG 0.326350 3_1:+72099950 Msa0373110:three_prime_UTR
GCGTTCATAGTTATAGATAT+TGG 0.330173 3_1:-72099266 None:intergenic
TTCCCATCAAGATATATATT+GGG 0.332169 3_1:+72098017 Msa0373110:three_prime_UTR
GGCTGGATTAATGATGCTTT+TGG 0.333762 3_1:+72097239 Msa0373110:CDS
GGAATGTGTTCTTGGCAAAT+AGG 0.334285 3_1:+72100866 Msa0373110:three_prime_UTR
TAAGAGATGGAATGTGTTCT+TGG 0.339227 3_1:+72100858 Msa0373110:three_prime_UTR
AAGTGATAGCATATATTGTT+AGG 0.342922 3_1:+72097818 Msa0373110:three_prime_UTR
GCTGATGTTGTCTTTACTCT+TGG 0.351449 3_1:+72097284 Msa0373110:CDS
ATTTCTGATTCCGTTGGCCT+TGG 0.355335 3_1:+72100283 Msa0373110:three_prime_UTR
TGCTTTATTAAAATTTCATT+AGG 0.361378 3_1:-72098983 None:intergenic
ATATTTACGAGGAGATTTAA+AGG 0.363149 3_1:-72097544 None:intergenic
ATGGGTGGTTAGCAATTATT+GGG 0.363703 3_1:+72100101 Msa0373110:three_prime_UTR
AATGTCAATCCTTTCGTCTC+TGG 0.364858 3_1:-72100370 None:intergenic
TAGGAAAGATGAAGCTATTT+CGG 0.365028 3_1:+72099237 Msa0373110:three_prime_UTR
ATCTAGCATTCTGTTTCAAC+AGG 0.368827 3_1:-72097884 None:intergenic
TTGGCCCTCTCAAGCTTGTC+AGG 0.369336 3_1:+72100007 Msa0373110:three_prime_UTR
ATCCTCACCATCAGAAATAA+GGG 0.369499 3_1:+72097418 Msa0373110:CDS
TGTTTGCTACTTCCGAAGTT+AGG 0.369759 3_1:+72100810 Msa0373110:three_prime_UTR
TTTGATACTTTAATCTGGTT+GGG 0.375716 3_1:+72098632 Msa0373110:three_prime_UTR
ATAAGAATTAAGCGAAATAA+TGG 0.383788 3_1:+72100712 Msa0373110:three_prime_UTR
AGATGGATGCTGGGAGTTGC+TGG 0.385326 3_1:+72099022 Msa0373110:three_prime_UTR
TATGCAATTTAAGCTCATTT+GGG 0.389233 3_1:-72098482 None:intergenic
GCATGTCAGCTACTGTAAAC+TGG 0.392246 3_1:+72100224 Msa0373110:three_prime_UTR
GACTCCACAAATACAACCTA+TGG 0.396278 3_1:+72100082 Msa0373110:three_prime_UTR
CTTTCAATTTCTGATTCCGT+TGG 0.399504 3_1:+72100277 Msa0373110:three_prime_UTR
ATTTGATACTTTAATCTGGT+TGG 0.403195 3_1:+72098631 Msa0373110:three_prime_UTR
GGGATCTCTTCTTCCATATG+AGG 0.405698 3_1:-72100405 None:intergenic
TAGTCTAAAGCTTCTATTCA+CGG 0.415250 3_1:+72098182 Msa0373110:three_prime_UTR
CCCACAATCATTCAAATGGC+TGG 0.417824 3_1:+72099875 Msa0373110:three_prime_UTR
TGGGACATGGAGATGGATGC+TGG 0.419380 3_1:+72099012 Msa0373110:three_prime_UTR
ACAAATGAAACATTTAGAAC+TGG 0.419687 3_1:-72100471 None:intergenic
AGATTCGCAAAGGATGGTTT+GGG 0.420208 3_1:-72098245 None:intergenic
CATACACCTCGGAACTCTTC+AGG 0.420694 3_1:-72100196 None:intergenic
CTTACTAAATTAACTACTCT+TGG 0.421275 3_1:-72100839 None:intergenic
GGCCGTCTTCTAGTTGGCAT+TGG 0.421699 3_1:+72097353 Msa0373110:CDS
CTCTATTTCGACTTTCCAAT+AGG 0.423581 3_1:+72097699 Msa0373110:three_prime_UTR
GCAGAGAAAACTACAGGAAA+TGG 0.427348 3_1:-72098277 None:intergenic
GTTGTTAGCTGCCACATTAT+GGG 0.428047 3_1:+72100545 Msa0373110:three_prime_UTR
TAAAGGAAGCAAAGAAAGAT+AGG 0.428138 3_1:-72097527 None:intergenic
TGCCCCAATATATATCTTGA+TGG 0.428959 3_1:-72098020 None:intergenic
AAACATCTCTTCAATTGAAA+AGG 0.430989 3_1:-72100792 None:intergenic
TTGAAGAAGTGGCCCTCATA+TGG 0.431500 3_1:+72100392 Msa0373110:three_prime_UTR
AGAAGACAAAGAAATGTAAA+GGG 0.439859 3_1:-72098321 None:intergenic
GCGCTGGCAATCCTTTCTGC+AGG 0.440540 3_1:+72100040 Msa0373110:three_prime_UTR
ACAAATGTGCTTATGATAAC+TGG 0.441016 3_1:+72097455 Msa0373110:CDS
GTAAATATGCTTCTGATACT+TGG 0.446122 3_1:+72097559 Msa0373110:three_prime_UTR
CCACCCATAGGTTGTATTTG+TGG 0.446371 3_1:-72100086 None:intergenic
TCTGATTCCGTTGGCCTTGG+TGG 0.448962 3_1:+72100286 Msa0373110:three_prime_UTR
GTTTACCCAATTTGAGTACA+TGG 0.449821 3_1:-72098804 None:intergenic
GTAGTTAATTTAGTAAGAGA+TGG 0.450293 3_1:+72100845 Msa0373110:three_prime_UTR
ATACTTGGCCGTCTTCTAGT+TGG 0.451275 3_1:+72097347 Msa0373110:CDS
GCAATTATTGGAGCAGCAAC+AGG 0.451312 3_1:+72097215 Msa0373110:CDS
AATCACCATGTACTCAAATT+GGG 0.453387 3_1:+72098799 Msa0373110:three_prime_UTR
CCCAGCCATTTGAATGATTG+TGG 0.454065 3_1:-72099876 None:intergenic
GAGGATTCTGCAATATATAC+AGG 0.455999 3_1:-72097401 None:intergenic
CACCATTTAGAAGTTTAAAG+AGG 0.456962 3_1:+72097669 Msa0373110:three_prime_UTR
TTGGAGCAGCAACAGGTGGC+TGG 0.458266 3_1:+72097222 Msa0373110:CDS
CAGTTCTGATTTCCGTTGAT+CGG 0.461506 3_1:-72099372 None:intergenic
TTAACCATGTATCCCGACTT+TGG 0.462032 3_1:+72100762 Msa0373110:three_prime_UTR
AAGAAGACAAAGAAATGTAA+AGG 0.465109 3_1:-72098322 None:intergenic
CCATGCAGGGCGAAGGAAGT+TGG 0.466366 3_1:+72099988 Msa0373110:three_prime_UTR
CTTCTAGTTGGCATTGGTGT+GGG 0.473241 3_1:+72097359 Msa0373110:CDS
AACTATTGTAAGCATGGCAT+TGG 0.474373 3_1:+72097187 Msa0373110:CDS
GTTGCTGGCATGAACGCTGC+TGG 0.476142 3_1:+72099938 Msa0373110:three_prime_UTR
TAGAAGAAGAGCTAACTGAT+TGG 0.476853 3_1:-72099906 None:intergenic
ATTTATCTAATTGACCATGC+AGG 0.482142 3_1:+72099974 Msa0373110:three_prime_UTR
TTGTGGAGTCAGATGATTGA+AGG 0.486137 3_1:-72100069 None:intergenic
GTGGCAGCTAACAACTCAAA+TGG 0.489208 3_1:-72100537 None:intergenic
GATGCATATGTTCTCATACT+TGG 0.489491 3_1:+72097332 Msa0373110:CDS
GAAGAGTTCCGAGGTGTATG+TGG 0.491124 3_1:+72100199 Msa0373110:three_prime_UTR
AGTATTATTGGACGCGAGCT+AGG 0.499495 3_1:+72100501 Msa0373110:three_prime_UTR
ACTTTCCAATAGGTCAGAAA+AGG 0.500603 3_1:+72097709 Msa0373110:three_prime_UTR
CCAGCCATTTGAATGATTGT+GGG 0.501345 3_1:-72099875 None:intergenic
GTCAGGTGCAACTGTAGCGC+TGG 0.505055 3_1:+72100024 Msa0373110:three_prime_UTR
CAGCCCCACAATCATTCAAA+TGG 0.506355 3_1:+72099871 Msa0373110:three_prime_UTR
AAAAGCCACCTTGGAGACTC+AGG 0.507127 3_1:-72099085 None:intergenic
GCGAAATAATGGTTCGTGGT+TGG 0.508139 3_1:+72100723 Msa0373110:three_prime_UTR
TGTCTCAATAACCTGAAGTC+CGG 0.508881 3_1:-72099410 None:intergenic
CTACTCTCTAAAGTAGAGGT+TGG 0.514834 3_1:-72098668 None:intergenic
AACGAACCCCTTATTTCTGA+TGG 0.515934 3_1:-72097425 None:intergenic
CCACAATCATTCAAATGGCT+GGG 0.517577 3_1:+72099876 Msa0373110:three_prime_UTR
AAATCATGGAAAGAAATGTC+AGG 0.518031 3_1:+72098361 Msa0373110:three_prime_UTR
AGTATGAGAACATATGCATC+TGG 0.518488 3_1:-72097329 None:intergenic
AAAAGGTTATCAACCAAAGT+CGG 0.519224 3_1:-72100775 None:intergenic
TCTTCTAGTTGGCATTGGTG+TGG 0.520316 3_1:+72097358 Msa0373110:CDS
TATAAGTGGCATGTTGTTTG+TGG 0.520344 3_1:+72098564 Msa0373110:three_prime_UTR
CAGGAATGGGACCGGTGCCA+TGG 0.520356 3_1:+72100152 Msa0373110:three_prime_UTR
AGTAACTAATAAGCTATAAG+TGG 0.521664 3_1:+72098550 Msa0373110:three_prime_UTR
AGGATTGACATTTGAAGAAG+TGG 0.524140 3_1:+72100381 Msa0373110:three_prime_UTR
CCAACTTCCTTCGCCCTGCA+TGG 0.525071 3_1:-72099988 None:intergenic
TTTCGCTCCAGGAATGGGAC+CGG 0.526032 3_1:+72100144 Msa0373110:three_prime_UTR
GGTGCCATGGACTGTGAACT+CGG 0.526228 3_1:+72100165 Msa0373110:three_prime_UTR
AAAGGTTATCAACCAAAGTC+GGG 0.528916 3_1:-72100774 None:intergenic
TGGTATGTATGATTGATATG+TGG 0.529093 3_1:+72100622 Msa0373110:three_prime_UTR
ATAGCTTATTAGTTACTGAC+TGG 0.529580 3_1:-72098544 None:intergenic
GATAGGCCTAACCTCGGTAA+AGG 0.531257 3_1:-72097510 None:intergenic
TAAAGCAGGTTCCTGGGACA+TGG 0.532937 3_1:+72098999 Msa0373110:three_prime_UTR
GGTATGTATGATTGATATGT+GGG 0.533355 3_1:+72100623 Msa0373110:three_prime_UTR
CTTATGATTGTTGCTGTGTG+AGG 0.534359 3_1:+72097791 Msa0373110:three_prime_UTR
TCAACCAAAGTCGGGATACA+TGG 0.534540 3_1:-72100766 None:intergenic
GCTGCCACATTATGGGATGA+TGG 0.538182 3_1:+72100552 Msa0373110:three_prime_UTR
ACCTTCAGGAAAAGCCACCT+TGG 0.540795 3_1:-72099094 None:intergenic
TCAATTGCAGAGAAAACTAC+AGG 0.541638 3_1:-72098283 None:intergenic
TAGAAGCTTTAGACTAGAGA+GGG 0.542612 3_1:-72098175 None:intergenic
ACCCCTTATTTCTGATGGTG+AGG 0.546053 3_1:-72097420 None:intergenic
GACCTAGTTTAATAGTATGT+AGG 0.546542 3_1:+72097618 Msa0373110:three_prime_UTR
GGATCTCTTCTTCCATATGA+GGG 0.549442 3_1:-72100404 None:intergenic
AGCATCCATCTCCATGTCCC+AGG 0.551573 3_1:-72099010 None:intergenic
ATTTCCGAGTTCACAGTCCA+TGG 0.551756 3_1:-72100169 None:intergenic
TAAATCAGATTCGCAAAGGA+TGG 0.552209 3_1:-72098251 None:intergenic
GCCACCTTGGAGACTCAGGC+AGG 0.552412 3_1:-72099081 None:intergenic
GTGAGTCATAATCTTTACCC+TGG 0.552440 3_1:-72100426 None:intergenic
AAGAGTTCCGAGGTGTATGT+GGG 0.553039 3_1:+72100200 Msa0373110:three_prime_UTR
GGATACATGGTTAATCGAGC+TGG 0.553877 3_1:-72100753 None:intergenic
GCAGGAAACTATTGTAAGCA+TGG 0.557552 3_1:+72097181 Msa0373110:intron
GCCCCAATATATATCTTGAT+GGG 0.562772 3_1:-72098019 None:intergenic
TGATAGCATATATTGTTAGG+AGG 0.567509 3_1:+72097821 Msa0373110:three_prime_UTR
GACTAGAGAGGGGACTGCAC+TGG 0.568609 3_1:-72098164 None:intergenic
TTGCACCTGACAAGCTTGAG+AGG 0.570360 3_1:-72100012 None:intergenic
TTTATCTAATTGACCATGCA+GGG 0.571092 3_1:+72099975 Msa0373110:three_prime_UTR
GGGACATGGAGATGGATGCT+GGG 0.571277 3_1:+72099013 Msa0373110:three_prime_UTR
AGGTTCCTGGGACATGGAGA+TGG 0.572155 3_1:+72099005 Msa0373110:three_prime_UTR
TTAAGCGAAATAATGGTTCG+TGG 0.574008 3_1:+72100719 Msa0373110:three_prime_UTR
ACGAAAGAACATTAGATACA+TGG 0.577039 3_1:+72099342 Msa0373110:three_prime_UTR
ACACAAAACTGAATAACAGC+TGG 0.577345 3_1:-72099049 None:intergenic
ATAAGTGGCATGTTGTTTGT+GGG 0.577891 3_1:+72098565 Msa0373110:three_prime_UTR
ATTGTAAGCATGGCATTGGT+TGG 0.582517 3_1:+72097191 Msa0373110:CDS
ACTGGCTTCCTCTCTCAAGA+AGG 0.585353 3_1:-72100453 None:intergenic
CGCTGGCAATCCTTTCTGCA+GGG 0.585990 3_1:+72100041 Msa0373110:three_prime_UTR
TTGTTTGTGCCAGAGACGAA+AGG 0.586090 3_1:+72100361 Msa0373110:three_prime_UTR
GATTCTTGGTGTTATATGTG+TGG 0.591951 3_1:+72100318 Msa0373110:three_prime_UTR
TAATTGACCATGCAGGGCGA+AGG 0.593131 3_1:+72099981 Msa0373110:three_prime_UTR
GAGTTCACAGTCCATGGCAC+CGG 0.593789 3_1:-72100163 None:intergenic
ATAGAAGCTTTAGACTAGAG+AGG 0.594943 3_1:-72098176 None:intergenic
TGAGTCATAATCTTTACCCT+GGG 0.594989 3_1:-72100425 None:intergenic
GTAACCATTATCATAGTGAA+AGG 0.597231 3_1:+72098871 Msa0373110:three_prime_UTR
CATATGGAAGAAGAGATCCC+AGG 0.601011 3_1:+72100408 Msa0373110:three_prime_UTR
ATCTTGCCTTTACCGAGGTT+AGG 0.602337 3_1:+72097504 Msa0373110:CDS
TATATATCTAAAGAATTGCG+AGG 0.603383 3_1:+72098831 Msa0373110:three_prime_UTR
TTCCTACATACTATTAAACT+AGG 0.605824 3_1:-72097620 None:intergenic
ACTCCACAAATACAACCTAT+GGG 0.605854 3_1:+72100083 Msa0373110:three_prime_UTR
GAAGGTAAGACCCTGCAGAA+AGG 0.609504 3_1:-72100051 None:intergenic
TCTTGGCAGATTCCTAACTT+CGG 0.609872 3_1:-72100822 None:intergenic
GCTTATTAGTTACTGACTGG+TGG 0.612036 3_1:-72098541 None:intergenic
TCCCATCAAGATATATATTG+GGG 0.615451 3_1:+72098018 Msa0373110:three_prime_UTR
CAAAGAAAATATCACTACCC+TGG 0.616662 3_1:-72100983 None:intergenic
TATTGGGGCAGCATCACTGA+AGG 0.622561 3_1:+72098033 Msa0373110:three_prime_UTR
GTGGTAAATCAGATTCGCAA+AGG 0.623756 3_1:-72098255 None:intergenic
GAGAAAACTACAGGAAATGG+TGG 0.625183 3_1:-72098274 None:intergenic
TAATGACTTAAACTATATGG+TGG 0.625870 3_1:-72098735 None:intergenic
CGTAAATCTTGCCTTTACCG+AGG 0.629817 3_1:+72097499 Msa0373110:CDS
ATATGGAAGAAGAGATCCCA+GGG 0.632244 3_1:+72100409 Msa0373110:three_prime_UTR
AGAAGCTTTAGACTAGAGAG+GGG 0.633416 3_1:-72098174 None:intergenic
TCACAGAACCTTCTTGAGAG+AGG 0.633499 3_1:+72100445 Msa0373110:three_prime_UTR
TGCACCTGACAAGCTTGAGA+GGG 0.634150 3_1:-72100011 None:intergenic
GACAACATCAGCACTAAGTG+TGG 0.634913 3_1:-72097273 None:intergenic
TCCTGCCTGAGTCTCCAAGG+TGG 0.636112 3_1:+72099080 Msa0373110:three_prime_UTR
ATATATCTAAAGAATTGCGA+GGG 0.637117 3_1:+72098832 Msa0373110:three_prime_UTR
GAAACTACCACCAAGGCCAA+CGG 0.643740 3_1:-72100293 None:intergenic
CACCAATGCCAACTAGAAGA+CGG 0.643763 3_1:-72097355 None:intergenic
TACTTGGTAGTCAACTTGAG+TGG 0.646316 3_1:+72097575 Msa0373110:three_prime_UTR
TCCTCACCATCAGAAATAAG+GGG 0.648202 3_1:+72097419 Msa0373110:CDS
AATAATTGCTAACCACCCAT+AGG 0.652891 3_1:-72100098 None:intergenic
ACAACCATCATCCCATAATG+TGG 0.657138 3_1:-72100556 None:intergenic
GAGTTCCGAGGTGTATGTGG+GGG 0.660731 3_1:+72100202 Msa0373110:three_prime_UTR
CAGCCATTTGAATGATTGTG+GGG 0.661560 3_1:-72099874 None:intergenic
ATTATTGGAGCAGCAACAGG+TGG 0.665008 3_1:+72097218 Msa0373110:CDS
GAGAACATATGCATCTGGTG+CGG 0.680847 3_1:-72097324 None:intergenic
AGAGTTCCGAGGTGTATGTG+GGG 0.681402 3_1:+72100201 Msa0373110:three_prime_UTR
AATGTGCTTATGATAACTGG+TGG 0.683650 3_1:+72097458 Msa0373110:CDS
ATCTATCCTGAAGAGTTCCG+AGG 0.687042 3_1:+72100190 Msa0373110:three_prime_UTR
CGGTAAAGGCAAGATTTACG+AGG 0.690136 3_1:-72097496 None:intergenic
AAGAAAGATAGGCCTAACCT+CGG 0.690515 3_1:-72097516 None:intergenic
CCACAAATACAACCTATGGG+TGG 0.700140 3_1:+72100086 Msa0373110:three_prime_UTR
CTTGCTCAGAAACAGCTGTG+AGG 0.709753 3_1:-72099309 None:intergenic
GAATCACGAAACTACCACCA+AGG 0.713908 3_1:-72100300 None:intergenic
GTATCAGAAGCATATTTACG+AGG 0.716037 3_1:-72097555 None:intergenic
GTTTAATGGATGTTAGACCA+TGG 0.717192 3_1:+72098424 Msa0373110:three_prime_UTR
CAGTAGAAGAGATAACACCA+TGG 0.775351 3_1:-72098441 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATCTTTAATATATAAAA+GGG - chr3_1:72096728-72096747 None:intergenic 10.0%
!! AATCATCTTTAATATATAAA+AGG - chr3_1:72096729-72096748 None:intergenic 10.0%
!! TATTAATCCATTAAATAAAT+GGG - chr3_1:72099497-72099516 None:intergenic 10.0%
!! AATTCAACAGTTAAAATTAT+GGG - chr3_1:72096843-72096862 None:intergenic 15.0%
!! TTAGTATAGAAAAAATGAAA+AGG - chr3_1:72097010-72097029 None:intergenic 15.0%
!!! GATATAAAAAGCATATATAA+TGG + chr3_1:72097739-72097758 Msa0373110:three_prime_UTR 15.0%
!!! ATATGAAATAAGCAATTTTT+GGG - chr3_1:72097951-72097970 None:intergenic 15.0%
!!! AATATGAAATAAGCAATTTT+TGG - chr3_1:72097952-72097971 None:intergenic 15.0%
!!! TTATTTGTTGAAGTTTTATT+TGG + chr3_1:72098905-72098924 Msa0373110:three_prime_UTR 15.0%
!!! TGCTTTATTAAAATTTCATT+AGG - chr3_1:72098986-72099005 None:intergenic 15.0%
!!! TAATGAAATTTTAATAAAGC+AGG + chr3_1:72098985-72099004 Msa0373110:three_prime_UTR 15.0%
!! CTATTAATCCATTAAATAAA+TGG - chr3_1:72099498-72099517 None:intergenic 15.0%
!!! CATTTATTTAATGGATTAAT+AGG + chr3_1:72099496-72099515 Msa0373110:intron 15.0%
!! CAATTCAACAGTTAAAATTA+TGG - chr3_1:72096844-72096863 None:intergenic 20.0%
!!! CATAATTTTAACTGTTGAAT+TGG + chr3_1:72096842-72096861 Msa0373110:intron 20.0%
!!! AATTTTTTACAAGTAGTATG+CGG + chr3_1:72096927-72096946 Msa0373110:intron 20.0%
!!! TCATTTTTTCTATACTAATG+TGG + chr3_1:72097012-72097031 Msa0373110:intron 20.0%
!!! CATTTTTTCTATACTAATGT+GGG + chr3_1:72097013-72097032 Msa0373110:intron 20.0%
!!! ATTTTTTCTATACTAATGTG+GGG + chr3_1:72097014-72097033 Msa0373110:intron 20.0%
!! TAACCATAAATCACTAAATT+AGG - chr3_1:72098079-72098098 None:intergenic 20.0%
!!! TTCTTAATGAACTTGTTTAA+TGG + chr3_1:72098410-72098429 Msa0373110:three_prime_UTR 20.0%
!! CTAAATTTGATACTTTAATC+TGG + chr3_1:72098627-72098646 Msa0373110:three_prime_UTR 20.0%
!! CTTTAATGACTTAAACTATA+TGG - chr3_1:72098741-72098760 None:intergenic 20.0%
!! CATATAGTTTAAGTCATTAA+AGG + chr3_1:72098739-72098758 Msa0373110:three_prime_UTR 20.0%
!! AATTAAAGAAAAATCCTAAC+AGG - chr3_1:72098950-72098969 None:intergenic 20.0%
!!! TTTTTTTTATGCATTACGTT+TGG + chr3_1:72099138-72099157 Msa0373110:intron 20.0%
!!! TTTTTTTATGCATTACGTTT+GGG + chr3_1:72099139-72099158 Msa0373110:intron 20.0%
!!! AAACTGTTATTTGTGATTTT+AGG + chr3_1:72099530-72099549 Msa0373110:intron 20.0%
!!! AACTGTTATTTGTGATTTTA+GGG + chr3_1:72099531-72099550 Msa0373110:intron 20.0%
!!! CTAAAGAATTCTTTTTCAAA+TGG + chr3_1:72099675-72099694 Msa0373110:intron 20.0%
!! CTGCATAATAATGAAAATAT+GGG - chr3_1:72099810-72099829 None:intergenic 20.0%
!! AGCGAAAAAAATAATACAAA+GGG - chr3_1:72100131-72100150 None:intergenic 20.0%
!!! TTTTGGGAGAATTTTAATTT+AGG + chr3_1:72100665-72100684 Msa0373110:three_prime_UTR 20.0%
!! ATAAGAATTAAGCGAAATAA+TGG + chr3_1:72100712-72100731 Msa0373110:three_prime_UTR 20.0%
!!! AAGATGATTTTGATGATGTT+CGG + chr3_1:72096740-72096759 Msa0373110:intron 25.0%
! TTCTCATTATTCAATGTTGT+TGG + chr3_1:72096792-72096811 Msa0373110:intron 25.0%
!!! TTTTTTCTATACTAATGTGG+GGG + chr3_1:72097015-72097034 Msa0373110:intron 25.0%
! ATATTTACGAGGAGATTTAA+AGG - chr3_1:72097547-72097566 None:intergenic 25.0%
! TTCCTACATACTATTAAACT+AGG - chr3_1:72097623-72097642 None:intergenic 25.0%
! TACCTCTTTAAACTTCTAAA+TGG - chr3_1:72097674-72097693 None:intergenic 25.0%
!! AGCATAAATCACATATTTTG+AGG + chr3_1:72097762-72097781 Msa0373110:three_prime_UTR 25.0%
! AAGTGATAGCATATATTGTT+AGG + chr3_1:72097818-72097837 Msa0373110:three_prime_UTR 25.0%
!! TGTCATAAGTGATAAACTTT+TGG + chr3_1:72097852-72097871 Msa0373110:three_prime_UTR 25.0%
! ATTGCTTATTTCATATTTGC+TGG + chr3_1:72097955-72097974 Msa0373110:three_prime_UTR 25.0%
! ATTCCCATCAAGATATATAT+TGG + chr3_1:72098016-72098035 Msa0373110:three_prime_UTR 25.0%
! TTCCCATCAAGATATATATT+GGG + chr3_1:72098017-72098036 Msa0373110:three_prime_UTR 25.0%
! AGAAGACAAAGAAATGTAAA+GGG - chr3_1:72098324-72098343 None:intergenic 25.0%
! AAGAAGACAAAGAAATGTAA+AGG - chr3_1:72098325-72098344 None:intergenic 25.0%
! AGTGTAGAAAAAGAAAATCA+TGG + chr3_1:72098347-72098366 Msa0373110:three_prime_UTR 25.0%
! TATGCAATTTAAGCTCATTT+GGG - chr3_1:72098485-72098504 None:intergenic 25.0%
! TTATGCAATTTAAGCTCATT+TGG - chr3_1:72098486-72098505 None:intergenic 25.0%
! AGTAACTAATAAGCTATAAG+TGG + chr3_1:72098550-72098569 Msa0373110:three_prime_UTR 25.0%
! ATTTGATACTTTAATCTGGT+TGG + chr3_1:72098631-72098650 Msa0373110:three_prime_UTR 25.0%
! TTTGATACTTTAATCTGGTT+GGG + chr3_1:72098632-72098651 Msa0373110:three_prime_UTR 25.0%
! TAATGACTTAAACTATATGG+TGG - chr3_1:72098738-72098757 None:intergenic 25.0%
! TATATATCTAAAGAATTGCG+AGG + chr3_1:72098831-72098850 Msa0373110:three_prime_UTR 25.0%
! ATATATCTAAAGAATTGCGA+GGG + chr3_1:72098832-72098851 Msa0373110:three_prime_UTR 25.0%
! AAAAAAAGTTTATCACCTTC+AGG - chr3_1:72099111-72099130 None:intergenic 25.0%
! TGAAACACCCATTTATTTAA+TGG + chr3_1:72099487-72099506 Msa0373110:intron 25.0%
! ACTGTAGTTAATTAGAAAAC+TGG + chr3_1:72099598-72099617 Msa0373110:intron 25.0%
!! ACTTCCATTTCTTATTTCAA+TGG + chr3_1:72099638-72099657 Msa0373110:intron 25.0%
!! CTTCCATTTCTTATTTCAAT+GGG + chr3_1:72099639-72099658 Msa0373110:intron 25.0%
! CCTGCATAATAATGAAAATA+TGG - chr3_1:72099811-72099830 None:intergenic 25.0%
!! CCATATTTTCATTATTATGC+AGG + chr3_1:72099808-72099827 Msa0373110:intron 25.0%
! GAGCGAAAAAAATAATACAA+AGG - chr3_1:72100132-72100151 None:intergenic 25.0%
!! ACAAATGAAACATTTAGAAC+TGG - chr3_1:72100474-72100493 None:intergenic 25.0%
! TATCGTTACAAAGACATTAT+TGG + chr3_1:72100602-72100621 Msa0373110:three_prime_UTR 25.0%
! AAACATCTCTTCAATTGAAA+AGG - chr3_1:72100795-72100814 None:intergenic 25.0%
! CTTACTAAATTAACTACTCT+TGG - chr3_1:72100842-72100861 None:intergenic 25.0%
! GTAGTTAATTTAGTAAGAGA+TGG + chr3_1:72100845-72100864 Msa0373110:three_prime_UTR 25.0%
!!! TTTTTTGTTTTTGAAGACCA+GGG + chr3_1:72100966-72100985 Msa0373110:three_prime_UTR 25.0%
!! AGTTTTAACAGCTGAATTCT+TGG - chr3_1:72096884-72096903 None:intergenic 30.0%
GGCAATAAACATATGAATCT+TGG - chr3_1:72096962-72096981 None:intergenic 30.0%
GAGAAACATAACTATCTAAC+TGG + chr3_1:72097064-72097083 Msa0373110:intron 30.0%
TGTTCAATTATTGCCTACTT+TGG + chr3_1:72097129-72097148 Msa0373110:intron 30.0%
! AACAATCTAGAATCCAAAGT+AGG - chr3_1:72097145-72097164 None:intergenic 30.0%
ACAAATGTGCTTATGATAAC+TGG + chr3_1:72097455-72097474 Msa0373110:CDS 30.0%
TAAAGGAAGCAAAGAAAGAT+AGG - chr3_1:72097530-72097549 None:intergenic 30.0%
GTAAATATGCTTCTGATACT+TGG + chr3_1:72097559-72097578 Msa0373110:three_prime_UTR 30.0%
! TGAGTGGATAAAATTTTCTG+TGG + chr3_1:72097591-72097610 Msa0373110:three_prime_UTR 30.0%
GACCTAGTTTAATAGTATGT+AGG + chr3_1:72097618-72097637 Msa0373110:three_prime_UTR 30.0%
ATAGTATGTAGGAATGTATC+TGG + chr3_1:72097629-72097648 Msa0373110:three_prime_UTR 30.0%
CACCATTTAGAAGTTTAAAG+AGG + chr3_1:72097669-72097688 Msa0373110:three_prime_UTR 30.0%
TGATAGCATATATTGTTAGG+AGG + chr3_1:72097821-72097840 Msa0373110:three_prime_UTR 30.0%
TCCCATCAAGATATATATTG+GGG + chr3_1:72098018-72098037 Msa0373110:three_prime_UTR 30.0%
CTGCCTAATTTAGTGATTTA+TGG + chr3_1:72098073-72098092 Msa0373110:three_prime_UTR 30.0%
CTGTCTCTCTTACATATAAA+AGG + chr3_1:72098127-72098146 Msa0373110:three_prime_UTR 30.0%
! TAGTCTAAAGCTTCTATTCA+CGG + chr3_1:72098182-72098201 Msa0373110:three_prime_UTR 30.0%
AAATCATGGAAAGAAATGTC+AGG + chr3_1:72098361-72098380 Msa0373110:three_prime_UTR 30.0%
ATAGCTTATTAGTTACTGAC+TGG - chr3_1:72098547-72098566 None:intergenic 30.0%
TTTAATCTGGTTGGGAATAT+AGG + chr3_1:72098640-72098659 Msa0373110:three_prime_UTR 30.0%
!!! TTTTCTACTCTCTAAAGTAG+AGG - chr3_1:72098675-72098694 None:intergenic 30.0%
AATCACCATGTACTCAAATT+GGG + chr3_1:72098799-72098818 Msa0373110:three_prime_UTR 30.0%
GTAACCATTATCATAGTGAA+AGG + chr3_1:72098871-72098890 Msa0373110:three_prime_UTR 30.0%
! TTAGCCTTTCACTATGATAA+TGG - chr3_1:72098878-72098897 None:intergenic 30.0%
!! ATTTTAATAAAGCAGGTTCC+TGG + chr3_1:72098992-72099011 Msa0373110:three_prime_UTR 30.0%
! TTTTAATAAAGCAGGTTCCT+GGG + chr3_1:72098993-72099012 Msa0373110:three_prime_UTR 30.0%
AATGCTTTCCTTATGCTAAA+AGG + chr3_1:72099183-72099202 Msa0373110:intron 30.0%
GTATCTCTTATGTACAGAAT+AGG + chr3_1:72099218-72099237 Msa0373110:intron 30.0%
TAGGAAAGATGAAGCTATTT+CGG + chr3_1:72099237-72099256 Msa0373110:three_prime_UTR 30.0%
GCGTTCATAGTTATAGATAT+TGG - chr3_1:72099269-72099288 None:intergenic 30.0%
ACGAAAGAACATTAGATACA+TGG + chr3_1:72099342-72099361 Msa0373110:three_prime_UTR 30.0%
!!! ATCAGAACTGCTTTTTTTGT+TGG + chr3_1:72099385-72099404 Msa0373110:three_prime_UTR 30.0%
!!! TCAGAACTGCTTTTTTTGTT+GGG + chr3_1:72099386-72099405 Msa0373110:three_prime_UTR 30.0%
AATAAATGGGTGTTTCAGAT+TGG - chr3_1:72099484-72099503 None:intergenic 30.0%
!!! GATTTTAGGGCTATACTTTT+TGG + chr3_1:72099544-72099563 Msa0373110:intron 30.0%
TAGTTAATTAGAAAACTGGC+AGG + chr3_1:72099602-72099621 Msa0373110:intron 30.0%
AGTTAATTAGAAAACTGGCA+GGG + chr3_1:72099603-72099622 Msa0373110:intron 30.0%
ATGCCCATTGAAATAAGAAA+TGG - chr3_1:72099645-72099664 None:intergenic 30.0%
ATTTATCTAATTGACCATGC+AGG + chr3_1:72099974-72099993 Msa0373110:three_prime_UTR 30.0%
TTTATCTAATTGACCATGCA+GGG + chr3_1:72099975-72099994 Msa0373110:three_prime_UTR 30.0%
!!! TGTATTATTTTTTTCGCTCC+AGG + chr3_1:72100133-72100152 Msa0373110:three_prime_UTR 30.0%
TGGTATGTATGATTGATATG+TGG + chr3_1:72100622-72100641 Msa0373110:three_prime_UTR 30.0%
GGTATGTATGATTGATATGT+GGG + chr3_1:72100623-72100642 Msa0373110:three_prime_UTR 30.0%
! TTGATCTTCCATAGCTTTTT+GGG + chr3_1:72100649-72100668 Msa0373110:three_prime_UTR 30.0%
AAAATTCTCCCAAAAAGCTA+TGG - chr3_1:72100660-72100679 None:intergenic 30.0%
AAAAGGTTATCAACCAAAGT+CGG - chr3_1:72100778-72100797 None:intergenic 30.0%
!!! GTTTTTTGTTTTTGAAGACC+AGG + chr3_1:72100965-72100984 Msa0373110:three_prime_UTR 30.0%
CTGTTAAAACTTGAGTGCAT+CGG + chr3_1:72096893-72096912 Msa0373110:intron 35.0%
! TATTGCCTTTTCTGTTTTCC+TGG + chr3_1:72096975-72096994 Msa0373110:intron 35.0%
AAGAACCAGGAAAACAGAAA+AGG - chr3_1:72096983-72097002 None:intergenic 35.0%
! TTTTACATCCTTACGTTTGC+AGG + chr3_1:72097163-72097182 Msa0373110:intron 35.0%
AATAGTTTCCTGCAAACGTA+AGG - chr3_1:72097174-72097193 None:intergenic 35.0%
AACTATTGTAAGCATGGCAT+TGG + chr3_1:72097187-72097206 Msa0373110:CDS 35.0%
TACTCTTGGATCAGTTGTTA+TGG + chr3_1:72097298-72097317 Msa0373110:CDS 35.0%
AGTATGAGAACATATGCATC+TGG - chr3_1:72097332-72097351 None:intergenic 35.0%
GATGCATATGTTCTCATACT+TGG + chr3_1:72097332-72097351 Msa0373110:CDS 35.0%
GAGGATTCTGCAATATATAC+AGG - chr3_1:72097404-72097423 None:intergenic 35.0%
AATCCTCACCATCAGAAATA+AGG + chr3_1:72097417-72097436 Msa0373110:CDS 35.0%
ATCCTCACCATCAGAAATAA+GGG + chr3_1:72097418-72097437 Msa0373110:CDS 35.0%
AATGTGCTTATGATAACTGG+TGG + chr3_1:72097458-72097477 Msa0373110:CDS 35.0%
! GTATCAGAAGCATATTTACG+AGG - chr3_1:72097558-72097577 None:intergenic 35.0%
CTCTATTTCGACTTTCCAAT+AGG + chr3_1:72097699-72097718 Msa0373110:three_prime_UTR 35.0%
ACTTTCCAATAGGTCAGAAA+AGG + chr3_1:72097709-72097728 Msa0373110:three_prime_UTR 35.0%
! TTATGCCTTTTCTGACCTAT+TGG - chr3_1:72097717-72097736 None:intergenic 35.0%
ATCTAGCATTCTGTTTCAAC+AGG - chr3_1:72097887-72097906 None:intergenic 35.0%
GCCCCAATATATATCTTGAT+GGG - chr3_1:72098022-72098041 None:intergenic 35.0%
TGCCCCAATATATATCTTGA+TGG - chr3_1:72098023-72098042 None:intergenic 35.0%
!! TAGAAGCTTTAGACTAGAGA+GGG - chr3_1:72098178-72098197 None:intergenic 35.0%
!! ATAGAAGCTTTAGACTAGAG+AGG - chr3_1:72098179-72098198 None:intergenic 35.0%
TAAATCAGATTCGCAAAGGA+TGG - chr3_1:72098254-72098273 None:intergenic 35.0%
TCAATTGCAGAGAAAACTAC+AGG - chr3_1:72098286-72098305 None:intergenic 35.0%
! GTTTAATGGATGTTAGACCA+TGG + chr3_1:72098424-72098443 Msa0373110:three_prime_UTR 35.0%
! TATAAGTGGCATGTTGTTTG+TGG + chr3_1:72098564-72098583 Msa0373110:three_prime_UTR 35.0%
! ATAAGTGGCATGTTGTTTGT+GGG + chr3_1:72098565-72098584 Msa0373110:three_prime_UTR 35.0%
GAATCACCATGTACTCAAAT+TGG + chr3_1:72098798-72098817 Msa0373110:three_prime_UTR 35.0%
GTTTACCCAATTTGAGTACA+TGG - chr3_1:72098807-72098826 None:intergenic 35.0%
! TTGTATTGCTGTTACCTGTT+AGG + chr3_1:72098933-72098952 Msa0373110:three_prime_UTR 35.0%
ACACAAAACTGAATAACAGC+TGG - chr3_1:72099052-72099071 None:intergenic 35.0%
!! TAGCATAAGGAAAGCATTCA+AGG - chr3_1:72099181-72099200 None:intergenic 35.0%
! GTAAGACACCTTTTAGCATA+AGG - chr3_1:72099194-72099213 None:intergenic 35.0%
! GGTAATTGACTTCATCTTCT+AGG - chr3_1:72099291-72099310 None:intergenic 35.0%
!!! CAGAACTGCTTTTTTTGTTG+GGG + chr3_1:72099387-72099406 Msa0373110:three_prime_UTR 35.0%
TAGAAGAAGAGCTAACTGAT+TGG - chr3_1:72099909-72099928 None:intergenic 35.0%
ACTCCACAAATACAACCTAT+GGG + chr3_1:72100083-72100102 Msa0373110:three_prime_UTR 35.0%
AATAATTGCTAACCACCCAT+AGG - chr3_1:72100101-72100120 None:intergenic 35.0%
TATGGGTGGTTAGCAATTAT+TGG + chr3_1:72100100-72100119 Msa0373110:three_prime_UTR 35.0%
ATGGGTGGTTAGCAATTATT+GGG + chr3_1:72100101-72100120 Msa0373110:three_prime_UTR 35.0%
!!! TATTTTTTTCGCTCCAGGAA+TGG + chr3_1:72100138-72100157 Msa0373110:three_prime_UTR 35.0%
!!! ATTTTTTTCGCTCCAGGAAT+GGG + chr3_1:72100139-72100158 Msa0373110:three_prime_UTR 35.0%
CTTTCAATTTCTGATTCCGT+TGG + chr3_1:72100277-72100296 Msa0373110:three_prime_UTR 35.0%
!! GATTCTTGGTGTTATATGTG+TGG + chr3_1:72100318-72100337 Msa0373110:three_prime_UTR 35.0%
AGGATTGACATTTGAAGAAG+TGG + chr3_1:72100381-72100400 Msa0373110:three_prime_UTR 35.0%
TGAGTCATAATCTTTACCCT+GGG - chr3_1:72100428-72100447 None:intergenic 35.0%
TTTGTGAGCTGCAGTATTAT+TGG + chr3_1:72100489-72100508 Msa0373110:three_prime_UTR 35.0%
! CTTGATCTTCCATAGCTTTT+TGG + chr3_1:72100648-72100667 Msa0373110:three_prime_UTR 35.0%
TTAAGCGAAATAATGGTTCG+TGG + chr3_1:72100719-72100738 Msa0373110:three_prime_UTR 35.0%
AAAGGTTATCAACCAAAGTC+GGG - chr3_1:72100777-72100796 None:intergenic 35.0%
TAAGAGATGGAATGTGTTCT+TGG + chr3_1:72100858-72100877 Msa0373110:three_prime_UTR 35.0%
!! CTACTTTTGTGATGTACGTA+CGG + chr3_1:72100917-72100936 Msa0373110:three_prime_UTR 35.0%
CAAAGAAAATATCACTACCC+TGG - chr3_1:72100986-72101005 None:intergenic 35.0%
GAGAAAAAGCTTGTACCTGA+AGG - chr3_1:72096777-72096796 None:intergenic 40.0%
TTGGCTTCAGAATGCATAAG+AGG + chr3_1:72096811-72096830 Msa0373110:intron 40.0%
TGGCTTCAGAATGCATAAGA+GGG + chr3_1:72096812-72096831 Msa0373110:intron 40.0%
TTAAAACTTGAGTGCATCGG+TGG + chr3_1:72096896-72096915 Msa0373110:intron 40.0%
ATGAAAAGGACAGAAGAACC+AGG - chr3_1:72096996-72097015 None:intergenic 40.0%
TTCTATACTAATGTGGGGGT+TGG + chr3_1:72097019-72097038 Msa0373110:intron 40.0%
TCTATACTAATGTGGGGGTT+GGG + chr3_1:72097020-72097039 Msa0373110:intron 40.0%
GCAGGAAACTATTGTAAGCA+TGG + chr3_1:72097181-72097200 Msa0373110:intron 40.0%
!! ATTGTAAGCATGGCATTGGT+TGG + chr3_1:72097191-72097210 Msa0373110:CDS 40.0%
!! GCATTGGTTGGTGCAATTAT+TGG + chr3_1:72097203-72097222 Msa0373110:CDS 40.0%
! GGCTGGATTAATGATGCTTT+TGG + chr3_1:72097239-72097258 Msa0373110:CDS 40.0%
! TGATGCTTTTGGACGTAAGA+AGG + chr3_1:72097250-72097269 Msa0373110:CDS 40.0%
GCTGATGTTGTCTTTACTCT+TGG + chr3_1:72097284-72097303 Msa0373110:CDS 40.0%
TCCTCACCATCAGAAATAAG+GGG + chr3_1:72097419-72097438 Msa0373110:CDS 40.0%
!! AACGAACCCCTTATTTCTGA+TGG - chr3_1:72097428-72097447 None:intergenic 40.0%
AAGAAAGATAGGCCTAACCT+CGG - chr3_1:72097519-72097538 None:intergenic 40.0%
! TACTTGGTAGTCAACTTGAG+TGG + chr3_1:72097575-72097594 Msa0373110:three_prime_UTR 40.0%
CTTATGATTGTTGCTGTGTG+AGG + chr3_1:72097791-72097810 Msa0373110:three_prime_UTR 40.0%
!! ATTCCGTTTTTGCAGCTTGA+AGG + chr3_1:72097987-72098006 Msa0373110:three_prime_UTR 40.0%
!! TTCCGTTTTTGCAGCTTGAA+GGG + chr3_1:72097988-72098007 Msa0373110:three_prime_UTR 40.0%
!! AGAAGCTTTAGACTAGAGAG+GGG - chr3_1:72098177-72098196 None:intergenic 40.0%
AGATTCGCAAAGGATGGTTT+GGG - chr3_1:72098248-72098267 None:intergenic 40.0%
GTGGTAAATCAGATTCGCAA+AGG - chr3_1:72098258-72098277 None:intergenic 40.0%
GAGAAAACTACAGGAAATGG+TGG - chr3_1:72098277-72098296 None:intergenic 40.0%
GCAGAGAAAACTACAGGAAA+TGG - chr3_1:72098280-72098299 None:intergenic 40.0%
CAGTAGAAGAGATAACACCA+TGG - chr3_1:72098444-72098463 None:intergenic 40.0%
! GCTTATTAGTTACTGACTGG+TGG - chr3_1:72098544-72098563 None:intergenic 40.0%
!! CTACTCTCTAAAGTAGAGGT+TGG - chr3_1:72098671-72098690 None:intergenic 40.0%
!! AGGAAAGCATTCAAGGAATG+AGG - chr3_1:72099174-72099193 None:intergenic 40.0%
!! TGCTAAAAGGTGTCTTACAC+TGG + chr3_1:72099196-72099215 Msa0373110:intron 40.0%
! CATGGATGTTTTCCGATCAA+CGG + chr3_1:72099360-72099379 Msa0373110:three_prime_UTR 40.0%
! CAGTTCTGATTTCCGTTGAT+CGG - chr3_1:72099375-72099394 None:intergenic 40.0%
TGTCTCAATAACCTGAAGTC+CGG - chr3_1:72099413-72099432 None:intergenic 40.0%
CAGCCATTTGAATGATTGTG+GGG - chr3_1:72099877-72099896 None:intergenic 40.0%
CCAGCCATTTGAATGATTGT+GGG - chr3_1:72099878-72099897 None:intergenic 40.0%
CCACAATCATTCAAATGGCT+GGG + chr3_1:72099876-72099895 Msa0373110:three_prime_UTR 40.0%
TTGTGGAGTCAGATGATTGA+AGG - chr3_1:72100072-72100091 None:intergenic 40.0%
GACTCCACAAATACAACCTA+TGG + chr3_1:72100082-72100101 Msa0373110:three_prime_UTR 40.0%
AATGTCAATCCTTTCGTCTC+TGG - chr3_1:72100373-72100392 None:intergenic 40.0%
GGATCTCTTCTTCCATATGA+GGG - chr3_1:72100407-72100426 None:intergenic 40.0%
ATATGGAAGAAGAGATCCCA+GGG + chr3_1:72100409-72100428 Msa0373110:three_prime_UTR 40.0%
GTGAGTCATAATCTTTACCC+TGG - chr3_1:72100429-72100448 None:intergenic 40.0%
AGTTGTTAGCTGCCACATTA+TGG + chr3_1:72100544-72100563 Msa0373110:three_prime_UTR 40.0%
GTTGTTAGCTGCCACATTAT+GGG + chr3_1:72100545-72100564 Msa0373110:three_prime_UTR 40.0%
ACAACCATCATCCCATAATG+TGG - chr3_1:72100559-72100578 None:intergenic 40.0%
TTAACCATGTATCCCGACTT+TGG + chr3_1:72100762-72100781 Msa0373110:three_prime_UTR 40.0%
! TGTTTGCTACTTCCGAAGTT+AGG + chr3_1:72100810-72100829 Msa0373110:three_prime_UTR 40.0%
TCTTGGCAGATTCCTAACTT+CGG - chr3_1:72100825-72100844 None:intergenic 40.0%
GGAATGTGTTCTTGGCAAAT+AGG + chr3_1:72100866-72100885 Msa0373110:three_prime_UTR 40.0%
! TACTGTTATTTGCTCCGTGC+AGG + chr3_1:72096688-72096707 Msa0373110:intron 45.0%
! TCCGTGCAGGTGTTATATCA+GGG + chr3_1:72096701-72096720 Msa0373110:intron 45.0%
TCGGAAAAGTAGCTTCCTTC+AGG + chr3_1:72096759-72096778 Msa0373110:intron 45.0%
CTATACTAATGTGGGGGTTG+GGG + chr3_1:72097021-72097040 Msa0373110:intron 45.0%
GCAATTATTGGAGCAGCAAC+AGG + chr3_1:72097215-72097234 Msa0373110:CDS 45.0%
ATTATTGGAGCAGCAACAGG+TGG + chr3_1:72097218-72097237 Msa0373110:CDS 45.0%
GACAACATCAGCACTAAGTG+TGG - chr3_1:72097276-72097295 None:intergenic 45.0%
GAGAACATATGCATCTGGTG+CGG - chr3_1:72097327-72097346 None:intergenic 45.0%
ATACTTGGCCGTCTTCTAGT+TGG + chr3_1:72097347-72097366 Msa0373110:CDS 45.0%
CACCAATGCCAACTAGAAGA+CGG - chr3_1:72097358-72097377 None:intergenic 45.0%
!! TCTTCTAGTTGGCATTGGTG+TGG + chr3_1:72097358-72097377 Msa0373110:CDS 45.0%
!! CTTCTAGTTGGCATTGGTGT+GGG + chr3_1:72097359-72097378 Msa0373110:CDS 45.0%
!! ACCCCTTATTTCTGATGGTG+AGG - chr3_1:72097423-72097442 None:intergenic 45.0%
CGGTAAAGGCAAGATTTACG+AGG - chr3_1:72097499-72097518 None:intergenic 45.0%
CGTAAATCTTGCCTTTACCG+AGG + chr3_1:72097499-72097518 Msa0373110:CDS 45.0%
ATCTTGCCTTTACCGAGGTT+AGG + chr3_1:72097504-72097523 Msa0373110:CDS 45.0%
!! TCCGTTTTTGCAGCTTGAAG+GGG + chr3_1:72097989-72098008 Msa0373110:three_prime_UTR 45.0%
CAGATTCGCAAAGGATGGTT+TGG - chr3_1:72098249-72098268 None:intergenic 45.0%
!!! ACTGCTTTTTTTGTTGGGGC+CGG + chr3_1:72099391-72099410 Msa0373110:three_prime_UTR 45.0%
! TCCACTTTCTCATGACTTGC+TGG + chr3_1:72099457-72099476 Msa0373110:intron 45.0%
!! CCACTTTCTCATGACTTGCT+GGG + chr3_1:72099458-72099477 Msa0373110:intron 45.0%
CAGCCCCACAATCATTCAAA+TGG + chr3_1:72099871-72099890 Msa0373110:three_prime_UTR 45.0%
CCCACAATCATTCAAATGGC+TGG + chr3_1:72099875-72099894 Msa0373110:three_prime_UTR 45.0%
CCCAGCCATTTGAATGATTG+TGG - chr3_1:72099879-72099898 None:intergenic 45.0%
CTTCTATCTCTCATCGTTGC+TGG + chr3_1:72099923-72099942 Msa0373110:three_prime_UTR 45.0%
AACGCTGCTGGAACAATTCT+TGG + chr3_1:72099950-72099969 Msa0373110:three_prime_UTR 45.0%
CCACCCATAGGTTGTATTTG+TGG - chr3_1:72100089-72100108 None:intergenic 45.0%
CCACAAATACAACCTATGGG+TGG + chr3_1:72100086-72100105 Msa0373110:three_prime_UTR 45.0%
ATTTCCGAGTTCACAGTCCA+TGG - chr3_1:72100172-72100191 None:intergenic 45.0%
ATCTATCCTGAAGAGTTCCG+AGG + chr3_1:72100190-72100209 Msa0373110:three_prime_UTR 45.0%
AAGAGTTCCGAGGTGTATGT+GGG + chr3_1:72100200-72100219 Msa0373110:three_prime_UTR 45.0%
GCATGTCAGCTACTGTAAAC+TGG + chr3_1:72100224-72100243 Msa0373110:three_prime_UTR 45.0%
! ATTTCTGATTCCGTTGGCCT+TGG + chr3_1:72100283-72100302 Msa0373110:three_prime_UTR 45.0%
GAATCACGAAACTACCACCA+AGG - chr3_1:72100303-72100322 None:intergenic 45.0%
GGTGGTAGTTTCGTGATTCT+TGG + chr3_1:72100304-72100323 Msa0373110:three_prime_UTR 45.0%
TTGTTTGTGCCAGAGACGAA+AGG + chr3_1:72100361-72100380 Msa0373110:three_prime_UTR 45.0%
TTGAAGAAGTGGCCCTCATA+TGG + chr3_1:72100392-72100411 Msa0373110:three_prime_UTR 45.0%
GGGATCTCTTCTTCCATATG+AGG - chr3_1:72100408-72100427 None:intergenic 45.0%
CATATGGAAGAAGAGATCCC+AGG + chr3_1:72100408-72100427 Msa0373110:three_prime_UTR 45.0%
TCACAGAACCTTCTTGAGAG+AGG + chr3_1:72100445-72100464 Msa0373110:three_prime_UTR 45.0%
AGTATTATTGGACGCGAGCT+AGG + chr3_1:72100501-72100520 Msa0373110:three_prime_UTR 45.0%
GTGGCAGCTAACAACTCAAA+TGG - chr3_1:72100540-72100559 None:intergenic 45.0%
GCGAAATAATGGTTCGTGGT+TGG + chr3_1:72100723-72100742 Msa0373110:three_prime_UTR 45.0%
GGATACATGGTTAATCGAGC+TGG - chr3_1:72100756-72100775 None:intergenic 45.0%
TCAACCAAAGTCGGGATACA+TGG - chr3_1:72100769-72100788 None:intergenic 45.0%
! CTCCGTGCAGGTGTTATATC+AGG + chr3_1:72096700-72096719 Msa0373110:intron 50.0%
CCCCTGATATAACACCTGCA+CGG - chr3_1:72096705-72096724 None:intergenic 50.0%
! CCGTGCAGGTGTTATATCAG+GGG + chr3_1:72096702-72096721 Msa0373110:intron 50.0%
GATAGGCCTAACCTCGGTAA+AGG - chr3_1:72097513-72097532 None:intergenic 50.0%
GCCCCTTCAAGCTGCAAAAA+CGG - chr3_1:72097993-72098012 None:intergenic 50.0%
TATTGGGGCAGCATCACTGA+AGG + chr3_1:72098033-72098052 Msa0373110:three_prime_UTR 50.0%
TAAAGCAGGTTCCTGGGACA+TGG + chr3_1:72098999-72099018 Msa0373110:three_prime_UTR 50.0%
! TTTTCCTGCCTGAGTCTCCA+AGG + chr3_1:72099077-72099096 Msa0373110:three_prime_UTR 50.0%
AAAAGCCACCTTGGAGACTC+AGG - chr3_1:72099088-72099107 None:intergenic 50.0%
! TCCAAGGTGGCTTTTCCTGA+AGG + chr3_1:72099093-72099112 Msa0373110:three_prime_UTR 50.0%
ACCTTCAGGAAAAGCCACCT+TGG - chr3_1:72099097-72099116 None:intergenic 50.0%
CTTGCTCAGAAACAGCTGTG+AGG - chr3_1:72099312-72099331 None:intergenic 50.0%
CCCAGCAAGTCATGAGAAAG+TGG - chr3_1:72099461-72099480 None:intergenic 50.0%
! CAGGCTTTTCAGCAGTTCAC+TGG + chr3_1:72099827-72099846 Msa0373110:intron 50.0%
TAATTGACCATGCAGGGCGA+AGG + chr3_1:72099981-72100000 Msa0373110:three_prime_UTR 50.0%
TGCACCTGACAAGCTTGAGA+GGG - chr3_1:72100014-72100033 None:intergenic 50.0%
TTGCACCTGACAAGCTTGAG+AGG - chr3_1:72100015-72100034 None:intergenic 50.0%
GAAGGTAAGACCCTGCAGAA+AGG - chr3_1:72100054-72100073 None:intergenic 50.0%
CATACACCTCGGAACTCTTC+AGG - chr3_1:72100199-72100218 None:intergenic 50.0%
GAAGAGTTCCGAGGTGTATG+TGG + chr3_1:72100199-72100218 Msa0373110:three_prime_UTR 50.0%
AGAGTTCCGAGGTGTATGTG+GGG + chr3_1:72100201-72100220 Msa0373110:three_prime_UTR 50.0%
GAAACTACCACCAAGGCCAA+CGG - chr3_1:72100296-72100315 None:intergenic 50.0%
! ACTGGCTTCCTCTCTCAAGA+AGG - chr3_1:72100456-72100475 None:intergenic 50.0%
GCTGCCACATTATGGGATGA+TGG + chr3_1:72100552-72100571 Msa0373110:three_prime_UTR 50.0%
! GGCCGTCTTCTAGTTGGCAT+TGG + chr3_1:72097353-72097372 Msa0373110:CDS 55.0%
AGGTTCCTGGGACATGGAGA+TGG + chr3_1:72099005-72099024 Msa0373110:three_prime_UTR 55.0%
AGCATCCATCTCCATGTCCC+AGG - chr3_1:72099013-72099032 None:intergenic 55.0%
TGGGACATGGAGATGGATGC+TGG + chr3_1:72099012-72099031 Msa0373110:three_prime_UTR 55.0%
GGGACATGGAGATGGATGCT+GGG + chr3_1:72099013-72099032 Msa0373110:three_prime_UTR 55.0%
AGATGGATGCTGGGAGTTGC+TGG + chr3_1:72099022-72099041 Msa0373110:three_prime_UTR 55.0%
! TTTTGTTGGGGCCGGACTTC+AGG + chr3_1:72099399-72099418 Msa0373110:three_prime_UTR 55.0%
TTGGCCCTCTCAAGCTTGTC+AGG + chr3_1:72100007-72100026 Msa0373110:three_prime_UTR 55.0%
CGCTGGCAATCCTTTCTGCA+GGG + chr3_1:72100041-72100060 Msa0373110:three_prime_UTR 55.0%
TTTCGCTCCAGGAATGGGAC+CGG + chr3_1:72100144-72100163 Msa0373110:three_prime_UTR 55.0%
GAGTTCACAGTCCATGGCAC+CGG - chr3_1:72100166-72100185 None:intergenic 55.0%
! GGTGCCATGGACTGTGAACT+CGG + chr3_1:72100165-72100184 Msa0373110:three_prime_UTR 55.0%
GAGTTCCGAGGTGTATGTGG+GGG + chr3_1:72100202-72100221 Msa0373110:three_prime_UTR 55.0%
ACATGCCCCCACATACACCT+CGG - chr3_1:72100210-72100229 None:intergenic 55.0%
!! TCTGATTCCGTTGGCCTTGG+TGG + chr3_1:72100286-72100305 Msa0373110:three_prime_UTR 55.0%
TTGGAGCAGCAACAGGTGGC+TGG + chr3_1:72097222-72097241 Msa0373110:CDS 60.0%
GACTAGAGAGGGGACTGCAC+TGG - chr3_1:72098167-72098186 None:intergenic 60.0%
TCCTGCCTGAGTCTCCAAGG+TGG + chr3_1:72099080-72099099 Msa0373110:three_prime_UTR 60.0%
GTTGCTGGCATGAACGCTGC+TGG + chr3_1:72099938-72099957 Msa0373110:three_prime_UTR 60.0%
CCAACTTCCTTCGCCCTGCA+TGG - chr3_1:72099991-72100010 None:intergenic 60.0%
CCATGCAGGGCGAAGGAAGT+TGG + chr3_1:72099988-72100007 Msa0373110:three_prime_UTR 60.0%
GTCAGGTGCAACTGTAGCGC+TGG + chr3_1:72100024-72100043 Msa0373110:three_prime_UTR 60.0%
! GCGCTGGCAATCCTTTCTGC+AGG + chr3_1:72100040-72100059 Msa0373110:three_prime_UTR 60.0%
GCCACCTTGGAGACTCAGGC+AGG - chr3_1:72099084-72099103 None:intergenic 65.0%
!! CATGGCACCGGTCCCATTCC+TGG - chr3_1:72100154-72100173 None:intergenic 65.0%
! CAGGAATGGGACCGGTGCCA+TGG + chr3_1:72100152-72100171 Msa0373110:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72096613 72101005 72096613 ID=Msa0373110;Name=Msa0373110
chr3_1 mRNA 72096613 72101005 72096613 ID=Msa0373110-mRNA-1;Parent=Msa0373110;Name=Msa0373110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.6|0.8|1|0.8|5|2926|125
chr3_1 exon 72096613 72096618 72096613 ID=Msa0373110-mRNA-1:exon:15967;Parent=Msa0373110-mRNA-1
chr3_1 exon 72096943 72096948 72096943 ID=Msa0373110-mRNA-1:exon:15968;Parent=Msa0373110-mRNA-1
chr3_1 exon 72097185 72099114 72097185 ID=Msa0373110-mRNA-1:exon:15969;Parent=Msa0373110-mRNA-1
chr3_1 exon 72099235 72099420 72099235 ID=Msa0373110-mRNA-1:exon:15970;Parent=Msa0373110-mRNA-1
chr3_1 exon 72099830 72101005 72099830 ID=Msa0373110-mRNA-1:exon:15971;Parent=Msa0373110-mRNA-1
chr3_1 CDS 72096613 72096618 72096613 ID=Msa0373110-mRNA-1:cds;Parent=Msa0373110-mRNA-1
chr3_1 CDS 72096943 72096948 72096943 ID=Msa0373110-mRNA-1:cds;Parent=Msa0373110-mRNA-1
chr3_1 CDS 72097185 72097550 72097185 ID=Msa0373110-mRNA-1:cds;Parent=Msa0373110-mRNA-1
chr3_1 three_prime_UTR 72097551 72099114 72097551 ID=Msa0373110-mRNA-1:three_prime_utr;Parent=Msa0373110-mRNA-1
chr3_1 three_prime_UTR 72099235 72099420 72099235 ID=Msa0373110-mRNA-1:three_prime_utr;Parent=Msa0373110-mRNA-1
chr3_1 three_prime_UTR 72099830 72101005 72099830 ID=Msa0373110-mRNA-1:three_prime_utr;Parent=Msa0373110-mRNA-1
Gene Sequence

>Msa0373110

ATGATATATGCGGAAACTATTGTAAGCATGGCATTGGTTGGTGCAATTATTGGAGCAGCAACAGGTGGCTGGATTAATGATGCTTTTGGACGTAAGAAGGCCACACTTAGTGCTGATGTTGTCTTTACTCTTGGATCAGTTGTTATGGCTGCCGCACCAGATGCATATGTTCTCATACTTGGCCGTCTTCTAGTTGGCATTGGTGTGGGCGTAGCTTCTGTCACTGCTCCTGTATATATTGCAGAATCCTCACCATCAGAAATAAGGGGTTCGTTAGTTAGCACAAATGTGCTTATGATAACTGGTGGACAGTTTCTTTCTTACCTCGTAAATCTTGCCTTTACCGAGGTTAGGCCTATCTTTCTTTGCTTCCTTTAA
Protein sequence

>Msa0373110

MIYAETIVSMALVGAIIGAATGGWINDAFGRKKATLSADVVFTLGSVVMAAAPDAYVLILGRLLVGIGVGVASVTAPVYIAESSPSEIRGSLVSTNVLMITGGQFLSYLVNLAFTEVRPIFLCFL*