AlfalfaGEDB | Msa0373110

M. sativa cultivar zhongmu-4 / Msa0373110

KEGG: K08150
GO: GO:0000325 GO:0003674 GO:0005215 GO:0005365 GO:0005366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901618 GO:1902600
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373110	RHN69157.1	97.368	114	3	0	5	118	71	184	1.72e-68	214

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373110	sp\|Q8VZR6\|INT1_ARATH	84.956	113	17	0	5	117	74	186	2.69e-45	156

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373110	A0A396J1R6	97.368	114	3	0	5	118	71	184	8.20e-69	214

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0373110	0.808808	2.581616e-50	-8.615850e-47
Msa0021980	Msa0373110	0.810358	1.199327e-50	-8.615850e-47
Msa0026670	Msa0373110	0.828525	8.567442e-55	-8.615850e-47
Msa0039780	Msa0373110	0.841535	4.479892e-58	-8.615850e-47
Msa0046860	Msa0373110	0.807338	5.306662e-50	-8.615850e-47
Msa0057270	Msa0373110	0.813308	2.733303e-51	-8.615850e-47
Msa0087130	Msa0373110	0.808593	2.870211e-50	-8.615850e-47
Msa0087370	Msa0373110	0.847025	1.500986e-59	-8.615850e-47
Msa0089410	Msa0373110	0.829841	4.108469e-55	-8.615850e-47
Msa0090350	Msa0373110	0.821102	4.826986e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373110	MtrunA17_Chr7g0214451	81.416	113	21	5	117	76	188	1.66e-51	169
Msa0373110	MtrunA17_Chr1g0213631	78.448	116	25	2	117	25	140	7.15e-49	162
Msa0373110	MtrunA17_Chr1g0213611	78.761	113	24	5	117	121	233	1.61e-48	162
Msa0373110	MtrunA17_Chr2g0303731	63.393	112	41	5	116	69	180	1.96e-42	146
Msa0373110	MtrunA17_Chr8g0376611	61.818	110	42	7	116	4	113	3.12e-42	145
Msa0373110	MtrunA17_Chr2g0290181	69.643	112	34	5	116	70	181	8.20e-41	142
Msa0373110	MtrunA17_Chr8g0376631	66.372	113	38	5	117	69	181	3.27e-38	135
Msa0373110	MtrunA17_Chr2g0303701	62.500	112	42	5	116	69	180	5.46e-35	126
Msa0373110	MtrunA17_Chr8g0376601	57.522	113	48	5	117	69	181	2.23e-31	116
Msa0373110	MtrunA17_Chr5g0434231	55.435	92	41	1	92	1	92	3.24e-30	105

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373110	AT2G43330.1	84.956	113	17	5	117	74	186	2.74e-46	156
Msa0373110	AT2G35740.1	65.179	112	39	5	116	69	180	2.76e-42	146
Msa0373110	AT1G30220.1	64.602	113	40	5	117	71	183	2.19e-37	133
Msa0373110	AT4G16480.2	64.865	111	39	6	116	71	181	4.09e-36	130
Msa0373110	AT4G16480.3	64.865	111	39	6	116	71	181	4.09e-36	130
Msa0373110	AT4G16480.1	64.865	111	39	6	116	71	181	4.09e-36	130
Msa0373110	AT4G35300.4	42.157	102	59	7	108	48	149	1.94e-19	83.2
Msa0373110	AT4G35300.8	42.157	102	59	7	108	48	149	1.94e-19	83.2
Msa0373110	AT4G35300.6	42.157	102	59	7	108	48	149	1.94e-19	83.2
Msa0373110	AT4G35300.11	42.157	102	59	7	108	48	149	1.94e-19	83.2

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Find 208 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCACCTTGGAGACTC+AGG	0.507127	3_1:-72099085	None:intergenic
AAAAGGTTATCAACCAAAGT+CGG	0.519224	3_1:-72100775	None:intergenic
AAACATCTCTTCAATTGAAA+AGG	0.430989	3_1:-72100792	None:intergenic
AAAGGTTATCAACCAAAGTC+GGG	0.528916	3_1:-72100774	None:intergenic
AAATCATGGAAAGAAATGTC+AGG	0.518031	3_1:+72098361	Msa0373110:three_prime_UTR
AACGAACCCCTTATTTCTGA+TGG	0.515934	3_1:-72097425	None:intergenic
AACGCTGCTGGAACAATTCT+TGG	0.326350	3_1:+72099950	Msa0373110:three_prime_UTR
AACTATTGTAAGCATGGCAT+TGG	0.474373	3_1:+72097187	Msa0373110:CDS
AAGAAAGATAGGCCTAACCT+CGG	0.690515	3_1:-72097516	None:intergenic
AAGAAGACAAAGAAATGTAA+AGG	0.465109	3_1:-72098322	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGCAATAAACATATGAATCT+TGG	-	chr3_1:72096962-72096981	None:intergenic	30.0%
GAGAAACATAACTATCTAAC+TGG	+	chr3_1:72097064-72097083	Msa0373110:intron	30.0%
TGTTCAATTATTGCCTACTT+TGG	+	chr3_1:72097129-72097148	Msa0373110:intron	30.0%
ACAAATGTGCTTATGATAAC+TGG	+	chr3_1:72097455-72097474	Msa0373110:CDS	30.0%
TAAAGGAAGCAAAGAAAGAT+AGG	-	chr3_1:72097530-72097549	None:intergenic	30.0%
GTAAATATGCTTCTGATACT+TGG	+	chr3_1:72097559-72097578	Msa0373110:three_prime_UTR	30.0%
GACCTAGTTTAATAGTATGT+AGG	+	chr3_1:72097618-72097637	Msa0373110:three_prime_UTR	30.0%
ATAGTATGTAGGAATGTATC+TGG	+	chr3_1:72097629-72097648	Msa0373110:three_prime_UTR	30.0%
CACCATTTAGAAGTTTAAAG+AGG	+	chr3_1:72097669-72097688	Msa0373110:three_prime_UTR	30.0%
TGATAGCATATATTGTTAGG+AGG	+	chr3_1:72097821-72097840	Msa0373110:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	72096613	72101005	72096613	ID=Msa0373110;Name=Msa0373110
chr3_1	mRNA	72096613	72101005	72096613	ID=Msa0373110-mRNA-1;Parent=Msa0373110;Name=Msa0373110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0.5\|0.6\|0.8\|1\|0.8\|5\|2926\|125
chr3_1	exon	72096613	72096618	72096613	ID=Msa0373110-mRNA-1:exon:15967;Parent=Msa0373110-mRNA-1
chr3_1	exon	72096943	72096948	72096943	ID=Msa0373110-mRNA-1:exon:15968;Parent=Msa0373110-mRNA-1
chr3_1	exon	72097185	72099114	72097185	ID=Msa0373110-mRNA-1:exon:15969;Parent=Msa0373110-mRNA-1
chr3_1	exon	72099235	72099420	72099235	ID=Msa0373110-mRNA-1:exon:15970;Parent=Msa0373110-mRNA-1
chr3_1	exon	72099830	72101005	72099830	ID=Msa0373110-mRNA-1:exon:15971;Parent=Msa0373110-mRNA-1
chr3_1	CDS	72096613	72096618	72096613	ID=Msa0373110-mRNA-1:cds;Parent=Msa0373110-mRNA-1
chr3_1	CDS	72096943	72096948	72096943	ID=Msa0373110-mRNA-1:cds;Parent=Msa0373110-mRNA-1
chr3_1	CDS	72097185	72097550	72097185	ID=Msa0373110-mRNA-1:cds;Parent=Msa0373110-mRNA-1
chr3_1	three_prime_UTR	72097551	72099114	72097551	ID=Msa0373110-mRNA-1:three_prime_utr;Parent=Msa0373110-mRNA-1
chr3_1	three_prime_UTR	72099235	72099420	72099235	ID=Msa0373110-mRNA-1:three_prime_utr;Parent=Msa0373110-mRNA-1
chr3_1	three_prime_UTR	72099830	72101005	72099830	ID=Msa0373110-mRNA-1:three_prime_utr;Parent=Msa0373110-mRNA-1

Gene Sequence	>Msa0373110 ATGATATATGCGGAAACTATTGTAAGCATGGCATTGGTTGGTGCAATTATTGGAGCAGCAACAGGTGGCTGGATTAATGATGCTTTTGGACGTAAGAAGGCCACACTTAGTGCTGATGTTGTCTTTACTCTTGGATCAGTTGTTATGGCTGCCGCACCAGATGCATATGTTCTCATACTTGGCCGTCTTCTAGTTGGCATTGGTGTGGGCGTAGCTTCTGTCACTGCTCCTGTATATATTGCAGAATCCTCACCATCAGAAATAAGGGGTTCGTTAGTTAGCACAAATGTGCTTATGATAACTGGTGGACAGTTTCTTTCTTACCTCGTAAATCTTGCCTTTACCGAGGTTAGGCCTATCTTTCTTTGCTTCCTTTAA
Protein sequence	>Msa0373110 MIYAETIVSMALVGAIIGAATGGWINDAFGRKKATLSADVVFTLGSVVMAAAPDAYVLILGRLLVGIGVGVASVTAPVYIAESSPSEIRGSLVSTNVLMITGGQFLSYLVNLAFTEVRPIFLCFL*