Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1445040 | sp|Q8S8E3|PYL6_ARATH | 58.571 | 210 | 79 | 3 | 1 | 203 | 1 | 209 | 1.61e-80 | 242 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1445040 | G7K772 | 95.610 | 205 | 9 | 0 | 1 | 205 | 1 | 205 | 1.03e-142 | 405 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0019570 | Msa1445040 | 0.810901 | 9.152409e-51 | -8.615850e-47 |
Msa1347030 | Msa1445040 | -0.808068 | 3.713779e-50 | -8.615850e-47 |
Msa1432460 | Msa1445040 | 0.806424 | 8.280646e-50 | -8.615850e-47 |
Msa1439590 | Msa1445040 | 0.805068 | 1.595279e-49 | -8.615850e-47 |
Msa1440160 | Msa1445040 | -0.804884 | 1.743484e-49 | -8.615850e-47 |
Msa1445040 | Msa1458530 | 0.828622 | 8.114996e-55 | -8.615850e-47 |
Msa0629220 | Msa1445040 | 0.900776 | 5.221873e-78 | -8.615850e-47 |
Msa0667010 | Msa1445040 | 0.915538 | 5.226537e-85 | -8.615850e-47 |
Msa0738680 | Msa1445040 | 0.809004 | 2.344688e-50 | -8.615850e-47 |
Msa0759610 | Msa1445040 | 0.807306 | 5.391105e-50 | -8.615850e-47 |
Msa0819150 | Msa1445040 | 0.803874 | 2.830472e-49 | -8.615850e-47 |
Msa0145090 | Msa1445040 | 0.802755 | 4.825289e-49 | -8.615850e-47 |
Msa0145200 | Msa1445040 | 0.802224 | 6.207928e-49 | -8.615850e-47 |
Msa1259560 | Msa1445040 | 0.801638 | 8.192313e-49 | -8.615850e-47 |
Msa1299280 | Msa1445040 | 0.801607 | 8.312570e-49 | -8.615850e-47 |
Msa0373110 | Msa1445040 | -0.815595 | 8.530228e-52 | -8.615850e-47 |
Msa0429050 | Msa1445040 | 0.807453 | 5.016846e-50 | -8.615850e-47 |
Msa0467480 | Msa1445040 | -0.827727 | 1.333759e-54 | -8.615850e-47 |
Msa1025270 | Msa1445040 | 0.805554 | 1.262165e-49 | -8.615850e-47 |
Msa1050140 | Msa1445040 | 0.839645 | 1.399506e-57 | -8.615850e-47 |
Msa1088460 | Msa1445040 | 0.841168 | 5.595970e-58 | -8.615850e-47 |
Msa1153000 | Msa1445040 | 0.836401 | 9.562965e-57 | -8.615850e-47 |
Msa1170840 | Msa1445040 | 0.982529 | 2.504896e-155 | -8.615850e-47 |
Msa1221500 | Msa1445040 | -0.820252 | 7.567091e-53 | -8.615850e-47 |
Msa1222040 | Msa1445040 | -0.806033 | 1.001090e-49 | -8.615850e-47 |
Msa0532210 | Msa1445040 | 0.916207 | 2.351225e-85 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1445040 | MtrunA17_Chr5g0437611 | 95.610 | 205 | 9 | 0 | 1 | 205 | 1 | 205 | 1.98e-146 | 405 |
Msa1445040 | MtrunA17_Chr3g0114121 | 62.946 | 224 | 62 | 5 | 1 | 204 | 1 | 223 | 4.31e-84 | 248 |
Msa1445040 | MtrunA17_Chr4g0005501 | 64.327 | 171 | 54 | 4 | 39 | 205 | 42 | 209 | 9.23e-72 | 216 |
Msa1445040 | MtrunA17_Chr7g0243271 | 68.000 | 175 | 46 | 4 | 39 | 205 | 6 | 178 | 1.56e-70 | 213 |
Msa1445040 | MtrunA17_Chr5g0411391 | 55.488 | 164 | 66 | 3 | 46 | 203 | 44 | 206 | 1.70e-60 | 188 |
Msa1445040 | MtrunA17_Chr8g0347191 | 52.353 | 170 | 73 | 4 | 41 | 205 | 66 | 232 | 9.87e-58 | 182 |
Msa1445040 | MtrunA17_Chr3g0126471 | 51.534 | 163 | 73 | 3 | 44 | 203 | 19 | 178 | 2.31e-57 | 179 |
Msa1445040 | MtrunA17_Chr1g0158871 | 50.909 | 165 | 75 | 2 | 44 | 205 | 17 | 178 | 6.83e-57 | 178 |
Msa1445040 | MtrunA17_Chr1g0151661 | 52.795 | 161 | 69 | 3 | 46 | 202 | 39 | 196 | 1.47e-54 | 172 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1445040 | AT2G40330.1 | 58.571 | 210 | 79 | 3 | 1 | 203 | 1 | 209 | 1.63e-81 | 242 |
Msa1445040 | AT5G05440.1 | 60.396 | 202 | 74 | 3 | 1 | 200 | 1 | 198 | 7.90e-77 | 229 |
Msa1445040 | AT2G38310.1 | 65.285 | 193 | 60 | 3 | 13 | 203 | 8 | 195 | 2.27e-73 | 221 |
Msa1445040 | AT1G01360.1 | 52.147 | 163 | 72 | 2 | 46 | 205 | 21 | 180 | 1.86e-60 | 187 |
Msa1445040 | AT4G27920.1 | 50.909 | 165 | 76 | 2 | 44 | 205 | 12 | 174 | 1.16e-57 | 180 |
Msa1445040 | AT4G01026.1 | 52.201 | 159 | 70 | 3 | 50 | 205 | 27 | 182 | 3.58e-56 | 177 |
Msa1445040 | AT5G53160.2 | 50.909 | 165 | 75 | 3 | 44 | 205 | 17 | 178 | 3.98e-56 | 176 |
Msa1445040 | AT4G17870.1 | 50.610 | 164 | 77 | 2 | 45 | 205 | 16 | 178 | 3.94e-53 | 169 |
Msa1445040 | AT2G26040.1 | 49.383 | 162 | 75 | 3 | 46 | 202 | 22 | 181 | 1.39e-50 | 162 |
Msa1445040 | AT1G73000.1 | 47.619 | 168 | 77 | 3 | 46 | 202 | 37 | 204 | 1.03e-49 | 160 |
Msa1445040 | AT5G46790.2 | 51.765 | 170 | 75 | 2 | 42 | 205 | 40 | 208 | 9.28e-49 | 159 |
Msa1445040 | AT5G46790.1 | 51.765 | 170 | 75 | 2 | 42 | 205 | 40 | 208 | 9.28e-49 | 159 |
Msa1445040 | AT5G45860.1 | 58.389 | 149 | 58 | 3 | 59 | 205 | 10 | 156 | 1.20e-46 | 151 |
Msa1445040 | AT5G45870.1 | 56.954 | 151 | 62 | 3 | 56 | 205 | 7 | 155 | 2.18e-45 | 148 |
Msa1445040 | AT4G18620.1 | 46.914 | 162 | 79 | 2 | 51 | 205 | 1 | 162 | 1.23e-35 | 123 |
Msa1445040 | AT5G53160.1 | 46.667 | 105 | 53 | 2 | 44 | 148 | 17 | 118 | 5.55e-28 | 103 |
Find 59 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTGGTTTGCAACCGTTTC+TGG | 0.080678 | tig0030914:-5597 | None:intergenic |
CGTGAAGTTCGACTTGTTTC+CGG | 0.131980 | tig0030914:+5795 | Msa1445040:CDS |
AAACGGAGGCCTTGATGGTT+TGG | 0.349101 | tig0030914:-5662 | None:intergenic |
GTGTTGTTGGTGGTGTTCAT+AGG | 0.363891 | tig0030914:+5886 | Msa1445040:CDS |
TCTAACACCGCCATGACTAA+TGG | 0.405607 | tig0030914:+5504 | Msa1445040:CDS |
GTTATTAGTTTCAGTGTTGT+TGG | 0.408321 | tig0030914:+5873 | Msa1445040:CDS |
TTCATAGGTGTAGGAATTAC+CGG | 0.411086 | tig0030914:+5901 | Msa1445040:CDS |
AGGCCTCCGTTTCAACTGTC+TGG | 0.430513 | tig0030914:+5673 | Msa1445040:CDS |
CGACACGCTTGAATTTGTTT+CGG | 0.430906 | tig0030914:-5537 | None:intergenic |
AGTTGAAACGGAGGCCTTGA+TGG | 0.442287 | tig0030914:-5667 | None:intergenic |
TAGGTGTAATTTGCAGTCAC+TGG | 0.448044 | tig0030914:+6043 | Msa1445040:CDS |
GGTGGTTTGCAACCGTTTCT+GGG | 0.462922 | tig0030914:-5596 | None:intergenic |
AACGTAGTTGCCTCCGGTGA+TGG | 0.485651 | tig0030914:+5753 | Msa1445040:CDS |
AACCGTTTCTGTCCCAGAAA+CGG | 0.488981 | tig0030914:+5584 | Msa1445040:CDS |
AGCTGCAACGTAGTTGCCTC+CGG | 0.500297 | tig0030914:+5747 | Msa1445040:CDS |
GCTTGAAACGGCAGGTAGAC+CGG | 0.502003 | tig0030914:-5814 | None:intergenic |
CAACCTCTCCATGCTTGAAA+CGG | 0.516613 | tig0030914:-5826 | None:intergenic |
GGATCACGACGGAGTAGCAC+TGG | 0.520709 | tig0030914:-5641 | None:intergenic |
AACCGTTTCTGGGACAGAAA+CGG | 0.521454 | tig0030914:-5586 | None:intergenic |
GTGACGACGTTGCACGGTGA+TGG | 0.524987 | tig0030914:+5927 | Msa1445040:CDS |
CGTTTCAAGCATGGAGAGGT+TGG | 0.529991 | tig0030914:+5827 | Msa1445040:CDS |
TCGAACCGTTGAAATTGAAC+CGG | 0.530260 | tig0030914:-5480 | None:intergenic |
CGTTGAAATTGAACCGGTGA+AGG | 0.532412 | tig0030914:-5474 | None:intergenic |
ACCGACACGAATGCCATCAC+CGG | 0.534492 | tig0030914:-5766 | None:intergenic |
AACGGACCAGACAGTTGAAA+CGG | 0.535986 | tig0030914:-5679 | None:intergenic |
CAAAATAGAAATGCCTTCAC+CGG | 0.537348 | tig0030914:+5461 | None:intergenic |
CTTCACCGGTTCAATTTCAA+CGG | 0.537786 | tig0030914:+5475 | Msa1445040:CDS |
CTCTCCATGCTTGAAACGGC+AGG | 0.544665 | tig0030914:-5822 | None:intergenic |
ACAAAGTGTTTGTAGCCTTG+TGG | 0.546590 | tig0030914:-5720 | None:intergenic |
TCTACCTGCCGTTTCAAGCA+TGG | 0.550915 | tig0030914:+5818 | Msa1445040:CDS |
CGGTCAGTGACGACGTTGCA+CGG | 0.551799 | tig0030914:+5921 | Msa1445040:CDS |
ATACGTTGTTGATGTACCAC+AGG | 0.556769 | tig0030914:+5977 | Msa1445040:CDS |
TTGGTGGTGTTCATAGGTGT+AGG | 0.559793 | tig0030914:+5892 | Msa1445040:CDS |
ATTAGTTTCAGTGTTGTTGG+TGG | 0.561597 | tig0030914:+5876 | Msa1445040:CDS |
CGTCGTGATCCAAACCATCA+AGG | 0.571418 | tig0030914:+5653 | Msa1445040:CDS |
CGTGCAACGTCGTCACTGAC+CGG | 0.576112 | tig0030914:-5920 | None:intergenic |
CAACACTGAAACTAATAACA+TGG | 0.585088 | tig0030914:-5869 | None:intergenic |
ACAGTTAATGCCATTAGTCA+TGG | 0.586782 | tig0030914:-5514 | None:intergenic |
AGCCTTGTGGATTGTCGAAG+CGG | 0.601019 | tig0030914:-5707 | None:intergenic |
AACCACCACATGCACGTGGT+GGG | 0.602296 | tig0030914:+5612 | Msa1445040:CDS |
ACGTTGCACGGTGATGGAAA+CGG | 0.604152 | tig0030914:+5933 | Msa1445040:CDS |
TCCGGTGATGGCATTCGTGT+CGG | 0.606951 | tig0030914:+5765 | Msa1445040:CDS |
TGTACCACAGGGTAACACTA+AGG | 0.609377 | tig0030914:+5989 | Msa1445040:CDS |
CGCCGCTTCGACAATCCACA+AGG | 0.611657 | tig0030914:+5705 | Msa1445040:CDS |
AAACCACCACATGCACGTGG+TGG | 0.622421 | tig0030914:+5611 | Msa1445040:CDS |
GTCCCACCACGTGCATGTGG+TGG | 0.623392 | tig0030914:-5614 | None:intergenic |
CTGCCGTTTCAAGCATGGAG+AGG | 0.630256 | tig0030914:+5823 | Msa1445040:CDS |
ATTGTCGAAGCGGCGGACAA+CGG | 0.630831 | tig0030914:-5697 | None:intergenic |
CTGCAAATTACACCTAACAA+TGG | 0.632688 | tig0030914:-6036 | None:intergenic |
TGCAAACCACCACATGCACG+TGG | 0.642151 | tig0030914:+5608 | Msa1445040:CDS |
TTTGTCCCACCACGTGCATG+TGG | 0.645948 | tig0030914:-5617 | None:intergenic |
TCTTCCTTAGTGTTACCCTG+TGG | 0.656284 | tig0030914:-5993 | None:intergenic |
GACACGAATGCCATCACCGG+AGG | 0.657865 | tig0030914:-5763 | None:intergenic |
CTTGTGGATTGTCGAAGCGG+CGG | 0.689521 | tig0030914:-5704 | None:intergenic |
CTTGATGGTTTGGATCACGA+CGG | 0.697791 | tig0030914:-5652 | None:intergenic |
GGACCAGACAGTTGAAACGG+AGG | 0.712986 | tig0030914:-5676 | None:intergenic |
TACGTTGTTGATGTACCACA+GGG | 0.714710 | tig0030914:+5978 | Msa1445040:CDS |
TTGCACGGTGATGGAAACGG+AGG | 0.721827 | tig0030914:+5936 | Msa1445040:CDS |
GTTAATGCCATTAGTCATGG+CGG | 0.726535 | tig0030914:-5511 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
CAACACTGAAACTAATAACA+TGG | - | tig0030914:5872-5891 | None:intergenic | 30.0% | |
! | GTTATTAGTTTCAGTGTTGT+TGG | + | tig0030914:5873-5892 | Msa1445040:CDS | 30.0% |
!! | GTTTTGTTGATACCATTGTT+AGG | + | tig0030914:6024-6043 | Msa1445040:CDS | 30.0% |
ACAGTTAATGCCATTAGTCA+TGG | - | tig0030914:5517-5536 | None:intergenic | 35.0% | |
! | ATTAGTTTCAGTGTTGTTGG+TGG | + | tig0030914:5876-5895 | Msa1445040:CDS | 35.0% |
TTCATAGGTGTAGGAATTAC+CGG | + | tig0030914:5901-5920 | Msa1445040:CDS | 35.0% | |
CTGCAAATTACACCTAACAA+TGG | - | tig0030914:6039-6058 | None:intergenic | 35.0% | |
!! | CTTCACCGGTTCAATTTCAA+CGG | + | tig0030914:5475-5494 | Msa1445040:CDS | 40.0% |
TCGAACCGTTGAAATTGAAC+CGG | - | tig0030914:5483-5502 | None:intergenic | 40.0% | |
GTTAATGCCATTAGTCATGG+CGG | - | tig0030914:5514-5533 | None:intergenic | 40.0% | |
! | CGACACGCTTGAATTTGTTT+CGG | - | tig0030914:5540-5559 | None:intergenic | 40.0% |
! | ACAAAGTGTTTGTAGCCTTG+TGG | - | tig0030914:5723-5742 | None:intergenic | 40.0% |
ATACGTTGTTGATGTACCAC+AGG | + | tig0030914:5977-5996 | Msa1445040:CDS | 40.0% | |
TACGTTGTTGATGTACCACA+GGG | + | tig0030914:5978-5997 | Msa1445040:CDS | 40.0% | |
! | TAGGTGTAATTTGCAGTCAC+TGG | + | tig0030914:6043-6062 | Msa1445040:CDS | 40.0% |
CGTTGAAATTGAACCGGTGA+AGG | - | tig0030914:5477-5496 | None:intergenic | 45.0% | |
TCTAACACCGCCATGACTAA+TGG | + | tig0030914:5504-5523 | Msa1445040:CDS | 45.0% | |
AACCGTTTCTGTCCCAGAAA+CGG | + | tig0030914:5584-5603 | Msa1445040:CDS | 45.0% | |
!! | AACCGTTTCTGGGACAGAAA+CGG | - | tig0030914:5589-5608 | None:intergenic | 45.0% |
! | CTTGATGGTTTGGATCACGA+CGG | - | tig0030914:5655-5674 | None:intergenic | 45.0% |
AACGGACCAGACAGTTGAAA+CGG | - | tig0030914:5682-5701 | None:intergenic | 45.0% | |
! | CGTGAAGTTCGACTTGTTTC+CGG | + | tig0030914:5795-5814 | Msa1445040:CDS | 45.0% |
CAACCTCTCCATGCTTGAAA+CGG | - | tig0030914:5829-5848 | None:intergenic | 45.0% | |
!! | GTGTTGTTGGTGGTGTTCAT+AGG | + | tig0030914:5886-5905 | Msa1445040:CDS | 45.0% |
!! | TTGGTGGTGTTCATAGGTGT+AGG | + | tig0030914:5892-5911 | Msa1445040:CDS | 45.0% |
TGTACCACAGGGTAACACTA+AGG | + | tig0030914:5989-6008 | Msa1445040:CDS | 45.0% | |
TCTTCCTTAGTGTTACCCTG+TGG | - | tig0030914:5996-6015 | None:intergenic | 45.0% | |
! | GGTGGTTTGCAACCGTTTCT+GGG | - | tig0030914:5599-5618 | None:intergenic | 50.0% |
! | TGGTGGTTTGCAACCGTTTC+TGG | - | tig0030914:5600-5619 | None:intergenic | 50.0% |
CGTCGTGATCCAAACCATCA+AGG | + | tig0030914:5653-5672 | Msa1445040:CDS | 50.0% | |
! | AAACGGAGGCCTTGATGGTT+TGG | - | tig0030914:5665-5684 | None:intergenic | 50.0% |
AGTTGAAACGGAGGCCTTGA+TGG | - | tig0030914:5670-5689 | None:intergenic | 50.0% | |
! | AGCCTTGTGGATTGTCGAAG+CGG | - | tig0030914:5710-5729 | None:intergenic | 50.0% |
! | TCTACCTGCCGTTTCAAGCA+TGG | + | tig0030914:5818-5837 | Msa1445040:CDS | 50.0% |
CGTTTCAAGCATGGAGAGGT+TGG | + | tig0030914:5827-5846 | Msa1445040:CDS | 50.0% | |
!! | ACGTTGCACGGTGATGGAAA+CGG | + | tig0030914:5933-5952 | Msa1445040:CDS | 50.0% |
TGCAAACCACCACATGCACG+TGG | + | tig0030914:5608-5627 | Msa1445040:CDS | 55.0% | |
AAACCACCACATGCACGTGG+TGG | + | tig0030914:5611-5630 | Msa1445040:CDS | 55.0% | |
AACCACCACATGCACGTGGT+GGG | + | tig0030914:5612-5631 | Msa1445040:CDS | 55.0% | |
TTTGTCCCACCACGTGCATG+TGG | - | tig0030914:5620-5639 | None:intergenic | 55.0% | |
AGGCCTCCGTTTCAACTGTC+TGG | + | tig0030914:5673-5692 | Msa1445040:CDS | 55.0% | |
GGACCAGACAGTTGAAACGG+AGG | - | tig0030914:5679-5698 | None:intergenic | 55.0% | |
ATTGTCGAAGCGGCGGACAA+CGG | - | tig0030914:5700-5719 | None:intergenic | 55.0% | |
! | CTTGTGGATTGTCGAAGCGG+CGG | - | tig0030914:5707-5726 | None:intergenic | 55.0% |
AGCTGCAACGTAGTTGCCTC+CGG | + | tig0030914:5747-5766 | Msa1445040:CDS | 55.0% | |
AACGTAGTTGCCTCCGGTGA+TGG | + | tig0030914:5753-5772 | Msa1445040:CDS | 55.0% | |
! | TCCGGTGATGGCATTCGTGT+CGG | + | tig0030914:5765-5784 | Msa1445040:CDS | 55.0% |
ACCGACACGAATGCCATCAC+CGG | - | tig0030914:5769-5788 | None:intergenic | 55.0% | |
GCTTGAAACGGCAGGTAGAC+CGG | - | tig0030914:5817-5836 | None:intergenic | 55.0% | |
CTCTCCATGCTTGAAACGGC+AGG | - | tig0030914:5825-5844 | None:intergenic | 55.0% | |
! | CTGCCGTTTCAAGCATGGAG+AGG | + | tig0030914:5823-5842 | Msa1445040:CDS | 55.0% |
!! | TTGCACGGTGATGGAAACGG+AGG | + | tig0030914:5936-5955 | Msa1445040:CDS | 55.0% |
GGATCACGACGGAGTAGCAC+TGG | - | tig0030914:5644-5663 | None:intergenic | 60.0% | |
CGCCGCTTCGACAATCCACA+AGG | + | tig0030914:5705-5724 | Msa1445040:CDS | 60.0% | |
GACACGAATGCCATCACCGG+AGG | - | tig0030914:5766-5785 | None:intergenic | 60.0% | |
CGTGCAACGTCGTCACTGAC+CGG | - | tig0030914:5923-5942 | None:intergenic | 60.0% | |
CGGTCAGTGACGACGTTGCA+CGG | + | tig0030914:5921-5940 | Msa1445040:CDS | 60.0% | |
GTGACGACGTTGCACGGTGA+TGG | + | tig0030914:5927-5946 | Msa1445040:CDS | 60.0% | |
GTCCCACCACGTGCATGTGG+TGG | - | tig0030914:5617-5636 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0030914 | gene | 5471 | 6088 | 5471 | ID=Msa1445040;Name=Msa1445040 |
tig0030914 | mRNA | 5471 | 6088 | 5471 | ID=Msa1445040-mRNA-1;Parent=Msa1445040;Name=Msa1445040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|205 |
tig0030914 | exon | 5471 | 6088 | 5471 | ID=Msa1445040-mRNA-1:exon:14794;Parent=Msa1445040-mRNA-1 |
tig0030914 | CDS | 5471 | 6088 | 5471 | ID=Msa1445040-mRNA-1:cds;Parent=Msa1445040-mRNA-1 |
Gene Sequence |
Protein sequence |