AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0347990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347990 MtrunA17_Chr3g0080351 98.341 844 14 0 1 844 1 844 0.0 1757
Msa0347990 MtrunA17_Chr1g0207551 49.879 824 366 9 49 844 7 811 0.0 795
Msa0347990 MtrunA17_Chr2g0329031 45.556 720 342 8 63 750 1 702 0.0 629
Msa0347990 MtrunA17_Chr5g0448761 35.277 669 377 11 68 696 52 704 6.40e-135 421
Msa0347990 MtrunA17_Chr1g0202341 33.175 630 378 9 74 673 49 665 2.19e-115 366
Msa0347990 MtrunA17_Chr2g0291581 34.510 623 365 8 76 673 71 675 1.92e-113 361
Msa0347990 MtrunA17_Chr2g0296781 35.417 576 324 8 80 625 1 558 1.58e-111 357
Msa0347990 MtrunA17_Chr5g0441581 32.899 614 367 11 75 662 31 625 3.01e-109 350
Msa0347990 MtrunA17_Chr5g0440451 32.569 654 352 11 75 675 42 659 4.36e-109 356
Msa0347990 MtrunA17_Chr1g0196541 32.143 644 385 7 80 693 1 622 2.61e-100 328
Msa0347990 MtrunA17_Chr6g0477261 39.855 414 241 3 219 625 35 447 4.93e-100 325
Msa0347990 MtrunA17_Chr3g0118611 35.484 465 290 5 224 684 107 565 3.43e-97 320
Msa0347990 MtrunA17_Chr5g0448511 34.961 512 317 7 231 733 7 511 5.68e-96 311
Msa0347990 MtrunA17_Chr2g0291591 31.440 493 297 4 75 544 63 537 3.61e-86 285
Msa0347990 MtrunA17_Chr2g0287061 30.547 622 365 14 74 675 181 755 1.53e-81 279
Msa0347990 MtrunA17_Chr3g0082121 29.302 645 407 15 59 675 24 647 1.28e-79 271
Msa0347990 MtrunA17_Chr1g0203721 28.754 626 402 5 79 673 66 678 2.37e-79 274
Msa0347990 MtrunA17_Chr8g0363841 29.655 580 351 11 79 623 20 577 1.78e-77 265
Msa0347990 MtrunA17_Chr2g0287651 29.276 649 392 17 80 688 79 700 9.94e-76 264
Msa0347990 MtrunA17_Chr6g0458391 27.549 559 378 6 76 624 225 766 2.39e-75 261
Msa0347990 MtrunA17_Chr2g0324011 26.891 595 393 8 67 633 1 581 3.66e-73 251
Msa0347990 MtrunA17_Chr1g0198761 29.244 595 361 18 79 636 50 621 7.94e-72 251
Msa0347990 MtrunA17_Chr1g0203051 29.289 577 347 15 68 610 72 621 1.07e-65 231
Msa0347990 MtrunA17_Chr2g0294841 27.393 606 383 13 54 618 14 603 7.11e-65 231
Msa0347990 MtrunA17_Chr2g0276841 26.489 638 404 18 76 672 70 683 1.09e-61 221
Msa0347990 MtrunA17_Chr5g0431001 30.275 436 251 11 76 474 61 480 3.33e-53 193
Msa0347990 MtrunA17_Chr2g0290391 26.138 593 363 16 74 621 49 611 8.95e-52 193
Msa0347990 MtrunA17_Chr1g0164591 30.820 305 190 6 172 458 7 308 2.45e-42 157
Msa0347990 MtrunA17_Chr7g0258861 27.393 303 181 7 67 343 1 290 4.12e-27 112
Msa0347990 MtrunA17_Chr2g0329361 34.146 123 70 1 74 196 59 170 2.79e-16 79.7
Msa0347990 MtrunA17_Chr3g0078041 34.127 126 71 1 75 200 49 162 2.10e-15 76.6
Msa0347990 MtrunA17_Chr2g0308841 23.830 235 169 4 399 627 1 231 2.74e-14 73.9
Msa0347990 MtrunA17_Chr1g0149131 27.273 132 86 2 344 475 1 122 1.14e-12 65.5
Msa0347990 MtrunA17_Chr4g0033611 27.027 185 102 5 54 238 55 206 1.17e-12 68.9
Msa0347990 MtrunA17_Chr7g0233911 32.520 123 57 2 75 190 33 136 1.26e-12 68.2
Msa0347990 MtrunA17_Chr2g0329421 31.405 121 69 2 75 195 26 132 4.50e-12 66.2
Msa0347990 MtrunA17_Chr3g0088371 27.044 159 92 5 586 724 1 155 4.66e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347990 AT3G22170.2 62.618 848 304 8 1 844 1 839 0.0 1090
Msa0347990 AT3G22170.1 62.618 848 304 8 1 844 1 839 0.0 1090
Msa0347990 AT4G15090.1 47.479 853 385 13 27 843 1 826 0.0 790
Msa0347990 AT4G15090.5 47.479 853 385 13 27 843 1 826 0.0 790
Msa0347990 AT4G15090.3 47.479 853 385 13 27 843 1 826 0.0 790
Msa0347990 AT4G15090.2 47.479 853 385 13 27 843 1 826 0.0 790
Msa0347990 AT4G15090.4 47.479 853 385 13 27 843 1 826 0.0 790
Msa0347990 AT1G76320.1 45.581 645 315 4 80 706 1 627 0.0 596
Msa0347990 AT1G76320.4 45.581 645 315 4 80 706 1 627 0.0 596
Msa0347990 AT1G76320.2 45.581 645 315 4 80 706 1 627 0.0 595
Msa0347990 AT1G76320.3 45.581 645 315 4 80 706 1 627 0.0 595
Msa0347990 AT4G19990.7 43.709 771 384 14 51 807 13 747 0.0 550
Msa0347990 AT4G19990.5 44.593 749 368 13 73 807 18 733 0.0 550
Msa0347990 AT4G19990.3 44.593 749 368 13 73 807 18 733 0.0 550
Msa0347990 AT4G19990.4 44.593 749 368 13 73 807 18 733 0.0 550
Msa0347990 AT4G19990.6 44.593 749 368 13 73 807 18 733 0.0 549
Msa0347990 AT4G19990.2 44.593 749 368 13 73 807 18 733 0.0 549
Msa0347990 AT2G32250.5 41.192 738 397 6 78 814 40 741 0.0 540
Msa0347990 AT2G32250.2 41.192 738 397 6 78 814 40 741 1.60e-180 540
Msa0347990 AT2G32250.4 41.192 738 397 6 78 814 40 741 1.60e-180 540
Msa0347990 AT2G32250.6 41.192 738 397 6 78 814 40 741 1.89e-180 540
Msa0347990 AT2G32250.1 41.192 738 397 6 78 814 40 741 1.89e-180 540
Msa0347990 AT2G32250.3 41.192 738 397 6 78 814 40 741 1.89e-180 540
Msa0347990 AT2G32250.7 41.168 736 396 6 80 814 1 700 6.34e-180 537
Msa0347990 AT2G32250.8 41.168 736 396 6 80 814 1 700 7.89e-180 536
Msa0347990 AT4G19990.1 43.909 706 349 13 116 807 4 676 4.68e-168 504
Msa0347990 AT4G38180.1 33.700 727 420 10 73 755 70 778 8.93e-136 423
Msa0347990 AT2G27110.2 32.584 623 361 9 75 675 48 633 2.62e-104 342
Msa0347990 AT2G27110.1 32.584 623 361 9 75 675 48 633 2.62e-104 342
Msa0347990 AT1G80010.1 30.094 638 387 9 76 673 95 713 1.85e-99 325
Msa0347990 AT1G52520.1 32.750 629 370 15 76 673 85 691 6.38e-99 323
Msa0347990 AT2G27110.3 35.256 468 289 5 219 680 34 493 1.90e-94 311
Msa0347990 AT3G06250.2 29.351 678 421 15 16 675 121 758 1.39e-87 295
Msa0347990 AT3G06250.1 29.351 678 421 15 16 675 121 758 1.39e-87 295
Msa0347990 AT3G06250.3 29.351 678 421 15 16 675 121 758 1.39e-87 295
Msa0347990 AT5G18960.2 30.569 615 383 11 69 675 204 782 1.42e-86 293
Msa0347990 AT5G18960.2 32.061 131 63 1 72 202 39 143 4.30e-11 67.4
Msa0347990 AT5G18960.1 30.569 615 383 11 69 675 204 782 1.42e-86 293
Msa0347990 AT5G18960.1 32.061 131 63 1 72 202 39 143 4.30e-11 67.4
Msa0347990 AT4G38170.1 33.192 473 294 8 243 706 21 480 5.91e-83 276
Msa0347990 AT1G10240.2 27.023 655 413 20 73 686 45 675 9.43e-67 236
Msa0347990 AT1G10240.1 27.023 655 413 20 73 686 45 675 9.43e-67 236
Msa0347990 AT5G28530.1 27.059 595 367 15 71 622 50 620 1.71e-56 207
Msa0347990 AT5G28530.3 26.789 601 357 16 71 622 50 616 4.04e-56 206
Msa0347990 AT5G28530.2 26.789 601 357 16 71 622 50 616 4.04e-56 206
Msa0347990 AT5G28530.4 26.523 558 354 17 71 622 50 557 6.38e-44 169
Msa0347990 AT5G28530.5 25.887 564 346 17 71 622 50 553 1.44e-43 168
Msa0347990 AT2G43280.1 29.050 179 110 3 57 230 3 169 4.20e-16 78.2
Msa0347990 AT3G59470.3 31.655 139 81 2 57 195 51 175 1.08e-15 78.2
Msa0347990 AT3G59470.1 31.655 139 81 2 57 195 51 175 1.08e-15 78.2
Msa0347990 AT3G59470.2 31.655 139 81 2 57 195 63 187 1.24e-15 78.2
Msa0347990 AT3G07500.1 34.074 135 69 3 74 206 31 147 4.05e-14 72.8
Msa0347990 AT4G12850.4 33.600 125 66 3 67 190 1 109 9.64e-13 66.6
Msa0347990 AT4G12850.2 33.600 125 66 3 67 190 1 109 1.38e-12 66.2
Msa0347990 AT4G12850.1 33.621 116 61 2 75 190 10 109 1.76e-12 67.4
Msa0347990 AT2G43280.2 28.276 145 87 3 91 230 2 134 8.07e-11 62.0

Find 210 sgRNAs with CRISPR-Local

Find 576 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGATAAAGTTCGTAATT+TGG 0.150148 3_1:-9758386 Msa0347990:CDS
AGTTGATATTGCAATGTTTA+AGG 0.172219 3_1:-9758878 Msa0347990:CDS
ACAAATCTTGAGCCACTTTC+TGG 0.189659 3_1:-9758850 Msa0347990:CDS
CACTACCAATTTATATTACT+TGG 0.214287 3_1:-9758124 Msa0347990:CDS
CGTAATTTGGGTCTGGAGTT+TGG 0.217600 3_1:-9758373 Msa0347990:CDS
CTGGTTTCGCATACAACATT+AGG 0.233730 3_1:-9756039 Msa0347990:CDS
GATTGTTCAGTTGAACTTAA+TGG 0.243913 3_1:-9756359 Msa0347990:intron
TTGGTGGTTCTTCAATATTC+TGG 0.244129 3_1:-9757272 Msa0347990:CDS
AGATACCCAAAGTAGAAATA+TGG 0.254157 3_1:-9756955 Msa0347990:CDS
TATTTGCTTATGGCATATAC+TGG 0.255412 3_1:-9757942 Msa0347990:CDS
GTAATTTGGGTCTGGAGTTT+GGG 0.256919 3_1:-9758372 Msa0347990:CDS
TTCGATAAAGTTCGTAATTT+GGG 0.268268 3_1:-9758385 Msa0347990:CDS
CTTGCCATTGTATTTGCTTA+TGG 0.286247 3_1:-9757952 Msa0347990:CDS
AATATTTATAATATTAATAT+AGG 0.290162 3_1:-9755278 Msa0347990:three_prime_UTR
CTTTCCCATATTTCTACTTT+GGG 0.301786 3_1:+9756950 None:intergenic
AAGTTTGCTTGTTCCAGATA+TGG 0.304206 3_1:-9758703 Msa0347990:CDS
TGGTCAGTAATTATCACTTT+TGG 0.304400 3_1:+9758019 None:intergenic
CCTTTAGAAAAGAGTGTTGC+AGG 0.305818 3_1:-9757515 Msa0347990:CDS
ATTGTTCAGTTGAACTTAAT+GGG 0.306375 3_1:-9756358 Msa0347990:intron
CCATTGATCGAGCATATTCT+TGG 0.307582 3_1:+9758788 None:intergenic
ACCAGCCACGATGGTTATTA+TGG 0.311286 3_1:-9756187 Msa0347990:CDS
AAGATCCAAGCTGAGATTAT+TGG 0.311613 3_1:-9757467 Msa0347990:CDS
CACACCCAAGTAATATAAAT+TGG 0.315083 3_1:+9758119 None:intergenic
TTGTTTGTTCACTTACTGCC+TGG 0.318808 3_1:+9758485 None:intergenic
TGTCGGCTATTTGAATATAA+AGG 0.333196 3_1:-9757314 Msa0347990:CDS
TCACTATATACATTAAATTA+AGG 0.333884 3_1:-9755588 Msa0347990:intron
TCATCCTGCCTGTCAAGTTT+AGG 0.337518 3_1:+9757428 None:intergenic
TGTTCACAGGGTGCATGATA+TGG 0.338272 3_1:-9757396 Msa0347990:CDS
CTTGTTATTCTTTAGGCTAC+TGG 0.338510 3_1:-9755197 Msa0347990:three_prime_UTR
TCAAAACTTGCAGGCACAAC+TGG 0.340078 3_1:-9756074 Msa0347990:intron
TGTATGAGCGTGAGATGGTT+AGG 0.342964 3_1:+9764323 None:intergenic
ACTTTCCCATATTTCTACTT+TGG 0.350583 3_1:+9756949 None:intergenic
CAACTGGATTTCTTGCGAAC+TGG 0.365489 3_1:-9756058 Msa0347990:CDS
CCTACAGAAGCTGGTACATC+AGG 0.374818 3_1:-9757005 Msa0347990:CDS
GTAACCCTCGAAGGTTATTA+TGG 0.378451 3_1:-9756488 Msa0347990:CDS
AAAGAAGGCAAGATGGGAAA+TGG 0.381396 3_1:-9758555 Msa0347990:CDS
AAAGTGCCGCAACATATTCT+TGG 0.383004 3_1:-9758081 Msa0347990:CDS
TGGTTTCGCATACAACATTA+GGG 0.384517 3_1:-9756038 Msa0347990:intron
GGATCTTCTTGAATACTGTA+TGG 0.385556 3_1:+9757483 None:intergenic
CCATGACATGACTTTGAAAT+CGG 0.385564 3_1:-9757999 Msa0347990:CDS
TTCATGAAGGATGTGTTCTT+AGG 0.388405 3_1:-9757722 Msa0347990:CDS
AACTGTGGTGCTCTTACATT+AGG 0.389960 3_1:+9755642 None:intergenic
ATATTACAAAATACTGGCCT+TGG 0.392792 3_1:+9755360 None:intergenic
CTTATATTTGTTTCTAACAT+AGG 0.395042 3_1:+9758180 None:intergenic
ATAAACTCAATTGGCCTTTG+AGG 0.400241 3_1:+9755395 None:intergenic
TCTTTGACAAATATGTTCAT+AGG 0.403324 3_1:-9757658 Msa0347990:CDS
AGGCAGAAGTGATGAATGTT+GGG 0.408722 3_1:-9756809 Msa0347990:CDS
AAGAAGGCAAGATGGGAAAT+GGG 0.409702 3_1:-9758554 Msa0347990:CDS
ACAGTATGAAACCATCTTGC+AGG 0.419590 3_1:-9757609 Msa0347990:CDS
TCGAGCTCGTGGTCGGTTGA+AGG 0.420065 3_1:+9758657 None:intergenic
TTTGCCAACATAAACTCAAT+TGG 0.421446 3_1:+9755386 None:intergenic
TGTATGAAGATCGCAAGTTA+TGG 0.424995 3_1:-9757754 Msa0347990:CDS
ATTGAGGTACATGCTCTAAA+TGG 0.425596 3_1:-9758922 Msa0347990:CDS
TTTATAATATTAATATAGGT+GGG 0.426007 3_1:-9755274 Msa0347990:three_prime_UTR
ACTTTGGGTATCTTCTTCAA+TGG 0.429012 3_1:+9756965 None:intergenic
AGCATTATATTACAAAATAC+TGG 0.430310 3_1:+9755354 None:intergenic
CCAAGAATATGCTCGATCAA+TGG 0.430685 3_1:-9758788 Msa0347990:CDS
GTATGAAGATCGCAAGTTAT+GGG 0.435215 3_1:-9757753 Msa0347990:CDS
ACATCAAAGCATGCCTGGTT+TGG 0.435777 3_1:-9756161 Msa0347990:intron
CAAAAGCAGATTCTGATACT+TGG 0.440513 3_1:-9757568 Msa0347990:CDS
GATACCCAAAGTAGAAATAT+GGG 0.442097 3_1:-9756954 Msa0347990:CDS
CAAGAATATGCTCGATCAAT+GGG 0.442288 3_1:-9758787 Msa0347990:CDS
GTAATATAAATTGGTAGTGC+TGG 0.445832 3_1:+9758128 None:intergenic
AATTGACACTTTCAGATCGT+TGG 0.447716 3_1:+9757684 None:intergenic
TAAAGTTCGTAATTTGGGTC+TGG 0.453859 3_1:-9758380 Msa0347990:CDS
CAAGAATCTGAAAATTCAAC+TGG 0.454460 3_1:-9758625 Msa0347990:CDS
TCTTGAGCCACTTTCTGGTA+TGG 0.454926 3_1:-9758845 Msa0347990:CDS
TTGTTATTCTTTAGGCTACT+GGG 0.457806 3_1:-9755196 Msa0347990:three_prime_UTR
ATGAAACCATCTTGCAGGAC+AGG 0.466060 3_1:-9757604 Msa0347990:CDS
AAAAGATGAAGAGAGAGGAT+TGG 0.466433 3_1:-9764377 Msa0347990:five_prime_UTR
ACCATCGTGGCTGGTTGGTA+TGG 0.466535 3_1:+9756195 None:intergenic
GGGAATCAACAGACTCTTCA+AGG 0.466578 3_1:-9756313 Msa0347990:CDS
GAGGCAGAAGTGATGAATGT+TGG 0.469181 3_1:-9756810 Msa0347990:CDS
TATGGATTGATGCTAAAAGT+AGG 0.472928 3_1:-9758246 Msa0347990:CDS
GGCACTTTCATCTGATATCA+AGG 0.474717 3_1:+9758096 None:intergenic
TGTTTGTTCACTTACTGCCT+GGG 0.477529 3_1:+9758486 None:intergenic
GTATGAGCGTGAGATGGTTA+GGG 0.479791 3_1:+9764324 None:intergenic
TTCATACCTGTCCTGCAAGA+TGG 0.481351 3_1:+9757598 None:intergenic
TGTTCACTTACTGCCTGGGC+TGG 0.481371 3_1:+9758490 None:intergenic
TTTGTATTCTGCAAACTGCC+TGG 0.482219 3_1:+9758441 None:intergenic
ATTTATAATATTAATATAGG+TGG 0.482485 3_1:-9755275 Msa0347990:three_prime_UTR
GGATAGATTTGAGCTTCGAC+AGG 0.484930 3_1:-9757795 Msa0347990:CDS
TTCTTTCTCATGTTCACCAG+TGG 0.488199 3_1:+9759041 None:intergenic
GATCTTCTTGAATACTGTAT+GGG 0.490261 3_1:+9757484 None:intergenic
ATGAACATATTTGTCAAAGA+AGG 0.490350 3_1:+9757661 None:intergenic
ATTGACACTTTCAGATCGTT+GGG 0.494400 3_1:+9757685 None:intergenic
ATTTGCTTATGGCATATACT+GGG 0.495990 3_1:-9757941 Msa0347990:CDS
GCTGTTATATTAATAAATAT+AGG 0.498076 3_1:-9755334 Msa0347990:three_prime_UTR
GACGCTCAAGCGTGTCTCGA+TGG 0.502862 3_1:+9755609 None:intergenic
AATCTGAACATATGCTGGCT+AGG 0.505661 3_1:-9757172 Msa0347990:CDS
CTGGTTGGTATGGAACTCAT+TGG 0.506086 3_1:+9756205 None:intergenic
TCTTTCTCATGTTCACCAGT+GGG 0.508767 3_1:+9759042 None:intergenic
ATTGAAGATGGTGGTGGTGA+TGG 0.509870 3_1:+9764238 None:intergenic
TGGTGCGCAACAGAGTGTGC+AGG 0.511496 3_1:-9756468 Msa0347990:CDS
CAAATACAATGGCAAGCACT+AGG 0.512004 3_1:+9757959 None:intergenic
AGAAGAATCTGAACATATGC+TGG 0.512248 3_1:-9757177 Msa0347990:CDS
GTATGGAATTCGAGTCTCAT+GGG 0.513881 3_1:-9758828 Msa0347990:CDS
AGCAAGAGTCCTACAGAAGC+TGG 0.514473 3_1:-9757014 Msa0347990:CDS
AAATTACGAACTTTATCGAA+TGG 0.514738 3_1:+9758388 None:intergenic
AACATTGCAATATCAACTGT+GGG 0.516629 3_1:+9758883 None:intergenic
ACTAGACAACATGCAACAAA+TGG 0.519807 3_1:-9756784 Msa0347990:intron
GGACAAAAGATGCAAAAGTC+AGG 0.522255 3_1:-9757211 Msa0347990:CDS
CGTTTCAAAACATATTGAGA+TGG 0.523403 3_1:+9757236 None:intergenic
GAATGTATGCTGTGATGGCC+AGG 0.523831 3_1:-9758459 Msa0347990:CDS
TTATCTTTGTCGACATGCAT+TGG 0.525970 3_1:-9757291 Msa0347990:CDS
GGTATGGAATTCGAGTCTCA+TGG 0.526936 3_1:-9758829 Msa0347990:CDS
ATTGAGATGGGAACACTGAA+TGG 0.527069 3_1:+9757249 None:intergenic
GGTGCACATCAAAGCATGCC+TGG 0.527959 3_1:-9756166 Msa0347990:CDS
AAAATTGCACAATGGAGGTA+TGG 0.528216 3_1:-9758971 Msa0347990:CDS
ATGAGACAAACATTGTTCAC+AGG 0.528939 3_1:-9757409 Msa0347990:CDS
CTTGTCATCCTAAACTTGAC+AGG 0.529447 3_1:-9757436 Msa0347990:CDS
ATTATTTATGTTAGTGACGT+GGG 0.531402 3_1:-9755158 Msa0347990:three_prime_UTR
ACTACCAATTTATATTACTT+GGG 0.533065 3_1:-9758123 Msa0347990:CDS
TGTTGGATTGTAGGTGAACT+CGG 0.535610 3_1:-9756832 Msa0347990:intron
TCATCCTAAACTTGACAGGC+AGG 0.538131 3_1:-9757432 Msa0347990:CDS
GCAGAATACAAAACTGTGGT+TGG 0.538665 3_1:-9758430 Msa0347990:CDS
TGCATTCCATGCACTAAATG+AGG 0.540583 3_1:-9757069 Msa0347990:CDS
AGGTATGGACGACAGACATA+TGG 0.540778 3_1:-9758956 Msa0347990:CDS
GTTTCAAAACATATTGAGAT+GGG 0.541753 3_1:+9757237 None:intergenic
AAAGCAAGTTGTTCTCATCA+TGG 0.542361 3_1:-9759082 Msa0347990:exon
TCATCATGGATATAGATCTC+AGG 0.543112 3_1:-9759068 Msa0347990:exon
GCTGGTACATCAGGGGCTCA+TGG 0.543275 3_1:-9756996 Msa0347990:CDS
TCTTTGTCGACATGCATTGG+TGG 0.544560 3_1:-9757288 Msa0347990:CDS
AAGGCCAATTGAGTTTATGT+TGG 0.545117 3_1:-9755390 Msa0347990:three_prime_UTR
TTCTGATACTTGGAATAAAG+TGG 0.545659 3_1:-9757558 Msa0347990:CDS
ATCTGAACATATGCTGGCTA+GGG 0.545736 3_1:-9757171 Msa0347990:CDS
ATGTATAGGCTAGGAAAATG+AGG 0.546125 3_1:-9755454 Msa0347990:intron
AACACATCCTTCATGAATGT+TGG 0.546900 3_1:+9757728 None:intergenic
AGCTGAGATTATTGGTGCAG+TGG 0.546997 3_1:-9757459 Msa0347990:CDS
CCAACACGTGATGATTACTA+CGG 0.549419 3_1:-9756334 Msa0347990:CDS
GCGCACCATAATAACCTTCG+AGG 0.551435 3_1:+9756483 None:intergenic
TGCATCTATAAATTCTCTTG+AGG 0.551832 3_1:+9758726 None:intergenic
CTTATGGCATATACTGGGGA+AGG 0.554219 3_1:-9757936 Msa0347990:CDS
ACCATAATAACCATCGTGGC+TGG 0.555757 3_1:+9756186 None:intergenic
ATATTAATATAGGTGGGGTA+AGG 0.557263 3_1:-9755268 Msa0347990:three_prime_UTR
TGCTCATCTGATGTAGAGAA+TGG 0.557881 3_1:-9755422 Msa0347990:three_prime_UTR
TGCTTGTTCTGTCGAGCTCG+TGG 0.562836 3_1:+9758646 None:intergenic
TAGATCTTGGTGAGGATCAA+CGG 0.563870 3_1:-9758282 Msa0347990:CDS
TCGAATTCCATACCAGAAAG+TGG 0.566016 3_1:+9758838 None:intergenic
TGTGTGCCTCATTTAGTGCA+TGG 0.566180 3_1:+9757063 None:intergenic
ATGAAGGATGTGTTCTTAGG+TGG 0.566472 3_1:-9757719 Msa0347990:CDS
TCACTAAAATTGAGCGAAGA+GGG 0.566685 3_1:-9757119 Msa0347990:CDS
GGTTATTCATAGCTTTGTGA+AGG 0.566920 3_1:-9758533 Msa0347990:CDS
GACAGACATATGGTTGAAGC+TGG 0.568268 3_1:-9758946 Msa0347990:CDS
AATTATTTATGTTAGTGACG+TGG 0.568496 3_1:-9755159 Msa0347990:three_prime_UTR
TTTGGGTCTGGAGTTTGGGG+AGG 0.569035 3_1:-9758368 Msa0347990:CDS
CTATTACAGACATGGCTGAA+AGG 0.571735 3_1:-9758058 Msa0347990:CDS
TGTTCTGTCGAGCTCGTGGT+CGG 0.571836 3_1:+9758650 None:intergenic
TTTAACAAAATCTTGCACAT+AGG 0.572860 3_1:+9757631 None:intergenic
GCAACAGAGTGTGCAGGGAA+TGG 0.572934 3_1:-9756462 Msa0347990:intron
TATGGTTGAAGCTGGTATTG+AGG 0.573490 3_1:-9758938 Msa0347990:CDS
AAATAAATGAAAATTGAAGA+TGG 0.574187 3_1:+9764226 None:intergenic
CTGCACCAATAATCTCAGCT+TGG 0.574589 3_1:+9757462 None:intergenic
AACTACACTTGATAACATGT+TGG 0.575276 3_1:-9759004 Msa0347990:CDS
TCAACAGACTCTTCAAGGAC+TGG 0.577433 3_1:-9756308 Msa0347990:intron
CTACAGAAGCTGGTACATCA+GGG 0.582637 3_1:-9757004 Msa0347990:CDS
CTTTAGAAAAGAGTGTTGCA+GGG 0.584026 3_1:-9757514 Msa0347990:CDS
CAGAGGTGTCTTGTATATGT+CGG 0.585513 3_1:-9757331 Msa0347990:CDS
CGAGGTGTATGAGCGTGAGA+TGG 0.586923 3_1:+9764318 None:intergenic
AAGAAGAATGTATGCTGTGA+TGG 0.589551 3_1:-9758464 Msa0347990:CDS
TTATAATATTAATATAGGTG+GGG 0.589807 3_1:-9755273 Msa0347990:three_prime_UTR
AAACATTGCAATATCAACTG+TGG 0.593917 3_1:+9758882 None:intergenic
TAATTTGGGTCTGGAGTTTG+GGG 0.596349 3_1:-9758371 Msa0347990:CDS
GGTGCGCAACAGAGTGTGCA+GGG 0.598023 3_1:-9756467 Msa0347990:CDS
ATGAAAATTGAAGATGGTGG+TGG 0.599899 3_1:+9764232 None:intergenic
CCGATTTCAAAGTCATGTCA+TGG 0.600152 3_1:+9757999 None:intergenic
CAACACGTGATGATTACTAC+GGG 0.600808 3_1:-9756333 Msa0347990:CDS
CAGACATGGCTGAAAGGTGT+AGG 0.601180 3_1:-9758052 Msa0347990:CDS
TGCAAAAGTCAGGAATGTCA+CGG 0.602820 3_1:-9757201 Msa0347990:CDS
GCAAAAGTCAGGAATGTCAC+GGG 0.606359 3_1:-9757200 Msa0347990:CDS
TAATAACCATCGTGGCTGGT+TGG 0.607504 3_1:+9756190 None:intergenic
CCTGATGTACCAGCTTCTGT+AGG 0.610024 3_1:+9757005 None:intergenic
TGTTATTCTTTAGGCTACTG+GGG 0.612344 3_1:-9755195 Msa0347990:three_prime_UTR
TTTATGTTGGCAAATCTCCA+AGG 0.615209 3_1:-9755377 Msa0347990:three_prime_UTR
GCAGGACAGGTATGAAGAGG+AGG 0.615423 3_1:-9757591 Msa0347990:CDS
CGCACCATAATAACCTTCGA+GGG 0.615700 3_1:+9756484 None:intergenic
ACACTTGATAACATGTTGGA+AGG 0.620645 3_1:-9759000 Msa0347990:CDS
GAGGTACATGCTCTAAATGG+TGG 0.620892 3_1:-9758919 Msa0347990:CDS
CATTGCAATATCAACTGTGG+GGG 0.621147 3_1:+9758885 None:intergenic
ATCACTAAAATTGAGCGAAG+AGG 0.621826 3_1:-9757120 Msa0347990:CDS
GGTGAATGAAGTAAAATCAG+AGG 0.623034 3_1:-9757348 Msa0347990:CDS
AACAAAACAATCTCTACATG+AGG 0.623988 3_1:+9755232 None:intergenic
ATGGGCACCAACATTCATGA+AGG 0.624807 3_1:-9757735 Msa0347990:CDS
ATTCTTGGCTATTACAGACA+TGG 0.625085 3_1:-9758066 Msa0347990:CDS
TTATGCAGTAGATCTTGGTG+AGG 0.626878 3_1:-9758290 Msa0347990:CDS
ATAGATCTCAGGTTACCCAC+TGG 0.627040 3_1:-9759057 Msa0347990:CDS
CTTGCAGGACAGGTATGAAG+AGG 0.628672 3_1:-9757594 Msa0347990:CDS
TAGAGAATGGAATACCTCAA+AGG 0.631467 3_1:-9755409 Msa0347990:three_prime_UTR
TGATGATCTGCAACAGAAAG+TGG 0.633143 3_1:+9764261 None:intergenic
GCAAGAAAAGATGAAGAGAG+AGG 0.634014 3_1:-9764382 Msa0347990:five_prime_UTR
TCCATACCAACCAGCCACGA+TGG 0.649328 3_1:-9756196 Msa0347990:CDS
TGAGACAAACATTGTTCACA+GGG 0.652768 3_1:-9757408 Msa0347990:CDS
CCGTAGTAATCATCACGTGT+TGG 0.653378 3_1:+9756334 None:intergenic
ATCTGCAACAGAAAGTGGTG+TGG 0.655770 3_1:+9764266 None:intergenic
TTAGTGAAACATACCAAACC+AGG 0.659731 3_1:+9756148 None:intergenic
TTTGCTTATGGCATATACTG+GGG 0.662956 3_1:-9757940 Msa0347990:CDS
GGCAGAAGTGATGAATGTTG+GGG 0.664453 3_1:-9756808 Msa0347990:CDS
ACATGGCTGAAAGGTGTAGG+TGG 0.667199 3_1:-9758049 Msa0347990:CDS
TACAGAAGCTGGTACATCAG+GGG 0.668012 3_1:-9757003 Msa0347990:CDS
TATGCCATAAGCAAATACAA+TGG 0.671446 3_1:+9757948 None:intergenic
AGAACTGCAGTAACCCTCGA+AGG 0.680930 3_1:-9756497 Msa0347990:CDS
TATGGAATTCGAGTCTCATG+GGG 0.685488 3_1:-9758827 Msa0347990:CDS
TTAGAAGAAGAGTTCACGCG+AGG 0.686398 3_1:+9764300 None:intergenic
GATGGATCTTCGTGTAACTG+TGG 0.687451 3_1:+9755627 None:intergenic
TAAATGAAAATTGAAGATGG+TGG 0.687501 3_1:+9764229 None:intergenic
TAATAGCCAAGAATATGTTG+CGG 0.691526 3_1:+9758075 None:intergenic
ACATTGCAATATCAACTGTG+GGG 0.697658 3_1:+9758884 None:intergenic
GTTTGCAGAATACAAAACTG+TGG 0.699066 3_1:-9758434 Msa0347990:CDS
TGGATTGTAGGTGAACTCGG+AGG 0.756855 3_1:-9756829 Msa0347990:intron
GTGCACCATAATAACCATCG+TGG 0.809451 3_1:+9756182 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATATTAAATTTAA+AGG + chr3_1:9760204-9760223 None:intergenic 0.0%
!! AATATTTATAATATTAATAT+AGG - chr3_1:9764243-9764262 Msa0347990:five_prime_UTR 0.0%
!! AAAAAAAAAAAACAAATCTA+AGG + chr3_1:9755369-9755388 None:intergenic 10.0%
!! AATTATTATCTATTATAAGT+TGG - chr3_1:9755418-9755437 Msa0347990:three_prime_UTR 10.0%
!!! TTTTACATTATATTTAGTTT+TGG - chr3_1:9755458-9755477 Msa0347990:intron 10.0%
!!! TTTATTTTTATTGAATCATT+AGG - chr3_1:9759840-9759859 Msa0347990:intron 10.0%
!! AAAAATTAGCATAAATTAAA+AGG - chr3_1:9759927-9759946 Msa0347990:intron 10.0%
!!! CAAATAGAAATAATTTTTTT+AGG + chr3_1:9760251-9760270 None:intergenic 10.0%
!!! CTAAAAAAATTATTTCTATT+TGG - chr3_1:9760249-9760268 Msa0347990:intron 10.0%
!!! TAAAAAAAATGAGAATTTTA+TGG - chr3_1:9761633-9761652 Msa0347990:intron 10.0%
!! ATTTATAATATTAATATAGG+TGG - chr3_1:9764246-9764265 Msa0347990:five_prime_UTR 10.0%
!! TTTATAATATTAATATAGGT+GGG - chr3_1:9764247-9764266 Msa0347990:five_prime_UTR 10.0%
!! AAATAAATGAAAATTGAAGA+TGG + chr3_1:9755298-9755317 None:intergenic 15.0%
!! TCATTTATTTATATATGCTT+TGG - chr3_1:9755663-9755682 Msa0347990:intron 15.0%
!! AAATAAAAAAGCAAATAGTT+TGG + chr3_1:9757245-9757264 None:intergenic 15.0%
!!! ACTATTTGCTTTTTTATTTT+TGG - chr3_1:9757246-9757265 Msa0347990:CDS 15.0%
!!! TTTTTTTTCATAGATATAAC+TGG - chr3_1:9757389-9757408 Msa0347990:CDS 15.0%
!! TTGATTAATATCATATAGAA+GGG + chr3_1:9757508-9757527 None:intergenic 15.0%
!! TTTGATTAATATCATATAGA+AGG + chr3_1:9757509-9757528 None:intergenic 15.0%
!!! TCTAATTTTATTTAAGCTAA+CGG - chr3_1:9757542-9757561 Msa0347990:CDS 15.0%
!! AAATAATATATCATTGAAGT+GGG + chr3_1:9758525-9758544 None:intergenic 15.0%
!!! AATATACTTTTACTATCAAT+TGG - chr3_1:9759068-9759087 Msa0347990:exon 15.0%
!!! TATTAAGATCTAGAATTAAA+TGG + chr3_1:9759361-9759380 None:intergenic 15.0%
!! AATCATTAGGTATATTAATT+TGG - chr3_1:9759853-9759872 Msa0347990:intron 15.0%
!! TAGCTAAAAATATATTATTG+GGG + chr3_1:9759886-9759905 None:intergenic 15.0%
!! GTAGCTAAAAATATATTATT+GGG + chr3_1:9759887-9759906 None:intergenic 15.0%
!! TTTACAAATGAATTTATTTG+AGG + chr3_1:9759909-9759928 None:intergenic 15.0%
!!! TTTTTCTTATTTTGTCATTT+CGG - chr3_1:9759981-9760000 Msa0347990:intron 15.0%
!! TGTATAATCTCTATAAAATT+AGG + chr3_1:9760174-9760193 None:intergenic 15.0%
!!! TTCTCATTTTTTTTAATTAC+AGG + chr3_1:9761628-9761647 None:intergenic 15.0%
!! AAAAAAAAAAAAAATCCTCT+AGG + chr3_1:9762907-9762926 None:intergenic 15.0%
!!! TATAATGGTAATTTTTTGAA+CGG + chr3_1:9763545-9763564 None:intergenic 15.0%
!! TCACTATATACATTAAATTA+AGG - chr3_1:9763933-9763952 Msa0347990:intron 15.0%
!!! TCACATTATTTTAAATGTAT+AGG - chr3_1:9764053-9764072 Msa0347990:intron 15.0%
!! GCTGTTATATTAATAAATAT+AGG - chr3_1:9764187-9764206 Msa0347990:intron 15.0%
!! TTATAATATTAATATAGGTG+GGG - chr3_1:9764248-9764267 Msa0347990:five_prime_UTR 15.0%
!!! ATAAAAACTTGTTATTCTTT+AGG - chr3_1:9764317-9764336 Msa0347990:five_prime_UTR 15.0%
!!! ATTTTCATTTATTTTCTCTC+AGG - chr3_1:9755304-9755323 Msa0347990:three_prime_UTR 20.0%
!! TTTATATTATGTTAACCTTC+CGG - chr3_1:9755522-9755541 Msa0347990:intron 20.0%
!! GATTTAATAGAATTTCGATA+TGG - chr3_1:9756450-9756469 Msa0347990:intron 20.0%
!!! TTAATTTTTCAGTTTCGAAT+TGG - chr3_1:9756602-9756621 Msa0347990:intron 20.0%
!! TTATTTATTATAGCACAAGT+TGG - chr3_1:9757269-9757288 Msa0347990:CDS 20.0%
!!! TCAATATGAATGAATTTTTG+TGG - chr3_1:9757932-9757951 Msa0347990:CDS 20.0%
!!! GTTTTGCTAAATGATAATAA+TGG - chr3_1:9758154-9758173 Msa0347990:CDS 20.0%
!!! AAACGTTTGAATTTTTAGAA+AGG - chr3_1:9758205-9758224 Msa0347990:CDS 20.0%
!!! AACGTTTGAATTTTTAGAAA+GGG - chr3_1:9758206-9758225 Msa0347990:CDS 20.0%
!! GAAATAATATATCATTGAAG+TGG + chr3_1:9758526-9758545 None:intergenic 20.0%
!! ATCAGAACTAAAAAAAGAAT+GGG - chr3_1:9758982-9759001 Msa0347990:CDS 20.0%
!! TTTCAACAGTATATATTGAT+TGG - chr3_1:9759133-9759152 Msa0347990:intron 20.0%
!!! TTTGATTGGTCTAAATAAAT+AGG - chr3_1:9759208-9759227 Msa0347990:intron 20.0%
!!! AATAGGTATTGATTTTGAAA+AGG - chr3_1:9759225-9759244 Msa0347990:intron 20.0%
!!! ATAGGTATTGATTTTGAAAA+GGG - chr3_1:9759226-9759245 Msa0347990:intron 20.0%
!! GGTAGCTAAAAATATATTAT+TGG + chr3_1:9759888-9759907 None:intergenic 20.0%
!! CATCTATTATATTTGACTAT+TGG + chr3_1:9760052-9760071 None:intergenic 20.0%
!!! GAATTTTAATGTAAAACGAA+AGG + chr3_1:9760346-9760365 None:intergenic 20.0%
!!! CTTATATTTGTTTCTAACAT+AGG + chr3_1:9761344-9761363 None:intergenic 20.0%
!! ACTACCAATTTATATTACTT+GGG - chr3_1:9761398-9761417 Msa0347990:intron 20.0%
!! AGTTTGAAAAATGCATATAT+AGG - chr3_1:9761659-9761678 Msa0347990:intron 20.0%
!!! GTTTTTTTTAACTAGATATG+AGG + chr3_1:9762848-9762867 None:intergenic 20.0%
!!! GATCAAAGATTTAATTTTTC+AGG + chr3_1:9763631-9763650 None:intergenic 20.0%
!!! ATTTAGTTTACAAGATTGTA+GGG + chr3_1:9763778-9763797 None:intergenic 20.0%
!!! AATTTAGTTTACAAGATTGT+AGG + chr3_1:9763779-9763798 None:intergenic 20.0%
!!! TTATTTTAAATGTATAGGCT+AGG - chr3_1:9764058-9764077 Msa0347990:intron 20.0%
!! AGCATTATATTACAAAATAC+TGG + chr3_1:9764170-9764189 None:intergenic 20.0%
! TAAATGAAAATTGAAGATGG+TGG + chr3_1:9755295-9755314 None:intergenic 25.0%
! AGTTATTAGTGTGAAATTGA+AGG + chr3_1:9755332-9755351 None:intergenic 25.0%
! TATAAATAAATGAGCTGCAT+TGG + chr3_1:9755656-9755675 None:intergenic 25.0%
!!! TAAAAGAGTGCTTACATATA+GGG + chr3_1:9755782-9755801 None:intergenic 25.0%
!!! ATAAAAGAGTGCTTACATAT+AGG + chr3_1:9755783-9755802 None:intergenic 25.0%
!! ATACAAAGTTTGTCGATTAT+CGG - chr3_1:9755912-9755931 Msa0347990:intron 25.0%
!!! TTGTTGAAGCTTTAAAGTTT+AGG - chr3_1:9756140-9756159 Msa0347990:intron 25.0%
!!! TACAAAGTTTTGTCGAATAT+CGG - chr3_1:9756191-9756210 Msa0347990:CDS 25.0%
!! TTGTTGAAGCATTAAAGTTT+AGG - chr3_1:9756344-9756363 Msa0347990:CDS 25.0%
! ATTCAAATTGACGATAAACT+TGG + chr3_1:9756400-9756419 None:intergenic 25.0%
! CATCACAAAAAGAACATAAT+CGG + chr3_1:9756517-9756536 None:intergenic 25.0%
! TTTCGAATTGGAATTTAGAT+AGG - chr3_1:9756614-9756633 Msa0347990:intron 25.0%
!! TTTGTTTGATTTCAGAAAAC+AGG - chr3_1:9756657-9756676 Msa0347990:intron 25.0%
! TATTAATAGATCTGGATCTA+GGG + chr3_1:9757000-9757019 None:intergenic 25.0%
! TTATTAATAGATCTGGATCT+AGG + chr3_1:9757001-9757020 None:intergenic 25.0%
! TCCAGATCTATTAATAATGT+TGG - chr3_1:9757004-9757023 Msa0347990:CDS 25.0%
! TCCAACATTATTAATAGATC+TGG + chr3_1:9757008-9757027 None:intergenic 25.0%
!! GAATCTAGAATAAAGTCTTA+TGG - chr3_1:9757656-9757675 Msa0347990:CDS 25.0%
! ATAACATGATACTACAATAC+AGG + chr3_1:9757741-9757760 None:intergenic 25.0%
!! AAGGTCTTAGAATCTTTTAT+TGG - chr3_1:9757898-9757917 Msa0347990:CDS 25.0%
!! AGGTCTTAGAATCTTTTATT+GGG - chr3_1:9757899-9757918 Msa0347990:CDS 25.0%
! AAAGAGATATATTCAACCAA+AGG + chr3_1:9757960-9757979 None:intergenic 25.0%
! GTGATTAAATAAAGCATGTT+TGG + chr3_1:9758314-9758333 None:intergenic 25.0%
!! TCATTCTGTTTATCCATTTT+AGG - chr3_1:9758425-9758444 Msa0347990:CDS 25.0%
! TAGACAAAAAGAAAATTGGA+GGG + chr3_1:9758483-9758502 None:intergenic 25.0%
! TACCTAGACAAAAAGAAAAT+TGG + chr3_1:9758487-9758506 None:intergenic 25.0%
!! AATTTTCTTTTTGTCTAGGT+AGG - chr3_1:9758486-9758505 Msa0347990:CDS 25.0%
!! ATTTTCTTTTTGTCTAGGTA+GGG - chr3_1:9758487-9758506 Msa0347990:CDS 25.0%
!!! TGAATTTAGCTTGTGATTTA+TGG - chr3_1:9758578-9758597 Msa0347990:CDS 25.0%
!! TTTCTAAAAACTGTCAATGT+TGG - chr3_1:9758602-9758621 Msa0347990:CDS 25.0%
! TGTTTAATTGTGCAATTCAA+TGG - chr3_1:9758829-9758848 Msa0347990:CDS 25.0%
! TACATTAGACAATGTAATCA+TGG - chr3_1:9758902-9758921 Msa0347990:CDS 25.0%
!!! CATTCTTTTTTTAGTTCTGA+TGG + chr3_1:9758983-9759002 None:intergenic 25.0%
! CATCAGAACTAAAAAAAGAA+TGG - chr3_1:9758981-9759000 Msa0347990:CDS 25.0%
!!! AGGAAACAGTATATTTTGAT+TGG - chr3_1:9759194-9759213 Msa0347990:intron 25.0%
!!! TAGGTATTGATTTTGAAAAG+GGG - chr3_1:9759227-9759246 Msa0347990:intron 25.0%
! AATGTAAAATTGTAAACCAG+AGG + chr3_1:9759590-9759609 None:intergenic 25.0%
!! TTACAATTTTACATTTTCCC+CGG - chr3_1:9759595-9759614 Msa0347990:intron 25.0%
!! TTTTAATGTAAAACGAAAGG+TGG + chr3_1:9760343-9760362 None:intergenic 25.0%
!!! ACTTGCTTTGATGATTTTAA+GGG + chr3_1:9760428-9760447 None:intergenic 25.0%
!!! AACTTGCTTTGATGATTTTA+AGG + chr3_1:9760429-9760448 None:intergenic 25.0%
!! AGTTGATATTGCAATGTTTA+AGG - chr3_1:9760643-9760662 Msa0347990:intron 25.0%
! AAATTACGAACTTTATCGAA+TGG + chr3_1:9761136-9761155 None:intergenic 25.0%
! ATTCGATAAAGTTCGTAATT+TGG - chr3_1:9761135-9761154 Msa0347990:intron 25.0%
! TTCGATAAAGTTCGTAATTT+GGG - chr3_1:9761136-9761155 Msa0347990:intron 25.0%
! CACTACCAATTTATATTACT+TGG - chr3_1:9761397-9761416 Msa0347990:intron 25.0%
!!! TGATGATTTTGACAATAGAT+GGG - chr3_1:9761693-9761712 Msa0347990:intron 25.0%
! ATGAACATATTTGTCAAAGA+AGG + chr3_1:9761863-9761882 None:intergenic 25.0%
! TCTTTGACAAATATGTTCAT+AGG - chr3_1:9761863-9761882 Msa0347990:intron 25.0%
! TTTAACAAAATCTTGCACAT+AGG + chr3_1:9761893-9761912 None:intergenic 25.0%
! GTTTCAAAACATATTGAGAT+GGG + chr3_1:9762287-9762306 None:intergenic 25.0%
!!! CATCTCAATATGTTTTGAAA+CGG - chr3_1:9762286-9762305 Msa0347990:intron 25.0%
! GAATCCAACTAAAAAGAAAA+AGG - chr3_1:9762608-9762627 Msa0347990:intron 25.0%
!!! CAAACCTTTTTCTTTTTAGT+TGG + chr3_1:9762615-9762634 None:intergenic 25.0%
! ATATGATCAAACACTTTGAT+AGG + chr3_1:9762788-9762807 None:intergenic 25.0%
!! AGTGTTTGATCATATACTTT+TGG - chr3_1:9762793-9762812 Msa0347990:intron 25.0%
! AAAAACAATACAAGACTTGT+TGG - chr3_1:9762862-9762881 Msa0347990:intron 25.0%
!!! TTTTTTTATCAAGCATGAAG+TGG - chr3_1:9762923-9762942 Msa0347990:intron 25.0%
!!! TTTTTTATCAAGCATGAAGT+GGG - chr3_1:9762924-9762943 Msa0347990:intron 25.0%
!!! AGAAGTTCCTTTTAACTATA+AGG + chr3_1:9762982-9763001 None:intergenic 25.0%
!! TTAAAAGGAACTTCTTTTGT+AGG - chr3_1:9762987-9763006 Msa0347990:intron 25.0%
! ATTGTTCAGTTGAACTTAAT+GGG - chr3_1:9763163-9763182 Msa0347990:intron 25.0%
!! ACAAACTATTTTATGTGTGT+AGG - chr3_1:9763291-9763310 Msa0347990:intron 25.0%
!! CAAACTATTTTATGTGTGTA+GGG - chr3_1:9763292-9763311 Msa0347990:intron 25.0%
! GTATTCATCAAACATTACAA+GGG + chr3_1:9763419-9763438 None:intergenic 25.0%
! AGTATTCATCAAACATTACA+AGG + chr3_1:9763420-9763439 None:intergenic 25.0%
! GAACGGTAATAATATCTAAA+AGG + chr3_1:9763528-9763547 None:intergenic 25.0%
! TTTGATCACATTAATCTTGT+TGG - chr3_1:9763644-9763663 Msa0347990:intron 25.0%
! TTGATCACATTAATCTTGTT+GGG - chr3_1:9763645-9763664 Msa0347990:intron 25.0%
! GTTTGAGAAATTTCAATTCA+AGG - chr3_1:9763709-9763728 Msa0347990:intron 25.0%
!! GAATCAACAAAATTTCAAGT+TGG + chr3_1:9763736-9763755 None:intergenic 25.0%
! AATTATTTATGTTAGTGACG+TGG - chr3_1:9764362-9764381 Msa0347990:five_prime_UTR 25.0%
! ATTATTTATGTTAGTGACGT+GGG - chr3_1:9764363-9764382 Msa0347990:five_prime_UTR 25.0%
TCTGAACAATTCGTTTATAG+TGG - chr3_1:9755620-9755639 Msa0347990:CDS 30.0%
GTTAGGTATAGAATTGTATG+AGG - chr3_1:9755695-9755714 Msa0347990:intron 30.0%
! TGTAAGCACTCTTTTATTAG+AGG - chr3_1:9755786-9755805 Msa0347990:intron 30.0%
! ACTCTTTTATTAGAGGCAAA+GGG - chr3_1:9755793-9755812 Msa0347990:intron 30.0%
AAAACAAATGTCATCAATCG+CGG + chr3_1:9756270-9756289 None:intergenic 30.0%
! CGATTATGTTCTTTTTGTGA+TGG - chr3_1:9756515-9756534 Msa0347990:CDS 30.0%
CAATCATTTACGACGAAATA+CGG + chr3_1:9756737-9756756 None:intergenic 30.0%
AGTTGTTATGAATCTGTTAG+AGG - chr3_1:9756863-9756882 Msa0347990:intron 30.0%
AATTAATGTCATCATGAGCT+AGG - chr3_1:9757027-9757046 Msa0347990:CDS 30.0%
ATACCATTATACCAATGTTG+TGG - chr3_1:9757071-9757090 Msa0347990:CDS 30.0%
TCCAATAAAATGACCAAGAA+GGG + chr3_1:9757106-9757125 None:intergenic 30.0%
ATACCATATAAGAACAGAAG+TGG + chr3_1:9757309-9757328 None:intergenic 30.0%
GTGTTTGATCTCGAAATATT+TGG + chr3_1:9757346-9757365 None:intergenic 30.0%
!! TCATAGATATAACTGGCTTT+AGG - chr3_1:9757396-9757415 Msa0347990:CDS 30.0%
!!! TAGGTCAATTTTAGAACAAG+CGG - chr3_1:9757415-9757434 Msa0347990:CDS 30.0%
AAAATGTAATGTGAGAGTCT+TGG - chr3_1:9757577-9757596 Msa0347990:CDS 30.0%
TGGAGCTTATAAAATTGCTT+TGG - chr3_1:9757597-9757616 Msa0347990:CDS 30.0%
TCATTTCTGCTGTAACTTAA+AGG - chr3_1:9757625-9757644 Msa0347990:CDS 30.0%
ATGGTCTATGTAATCTTTCT+TGG - chr3_1:9757675-9757694 Msa0347990:CDS 30.0%
TCAGATTCTAACTCAAAATC+AGG - chr3_1:9757840-9757859 Msa0347990:CDS 30.0%
CAGATTCTAACTCAAAATCA+GGG - chr3_1:9757841-9757860 Msa0347990:CDS 30.0%
!!! AACAGGTCTTTTGAAATCAA+AGG - chr3_1:9757879-9757898 Msa0347990:CDS 30.0%
! ATGAATTTTTGTGGATCCTT+TGG - chr3_1:9757941-9757960 Msa0347990:CDS 30.0%
AGAGCACAAACATAAACATT+AGG + chr3_1:9757985-9758004 None:intergenic 30.0%
TACACATTTAGTAAAGTCTG+AGG + chr3_1:9758242-9758261 None:intergenic 30.0%
ACCACTTATTTACACATCTT+AGG - chr3_1:9758345-9758364 Msa0347990:CDS 30.0%
ACCTAAGATGTGTAAATAAG+TGG + chr3_1:9758349-9758368 None:intergenic 30.0%
! TTCTGTTTATCCATTTTAGG+TGG - chr3_1:9758428-9758447 Msa0347990:CDS 30.0%
!! TCTGTTTATCCATTTTAGGT+GGG - chr3_1:9758429-9758448 Msa0347990:CDS 30.0%
CTAGACAAAAAGAAAATTGG+AGG + chr3_1:9758484-9758503 None:intergenic 30.0%
! CTCCAATTTTCTTTTTGTCT+AGG - chr3_1:9758482-9758501 Msa0347990:CDS 30.0%
! TTTTCTTTTTGTCTAGGTAG+GGG - chr3_1:9758488-9758507 Msa0347990:CDS 30.0%
AAATCAAAACCAACATGTAG+TGG + chr3_1:9758554-9758573 None:intergenic 30.0%
!!! ACTACATGTTGGTTTTGATT+TGG - chr3_1:9758553-9758572 Msa0347990:CDS 30.0%
!!! ATCTAACTCTATGCTTTTTC+TGG + chr3_1:9758868-9758887 None:intergenic 30.0%
CATAGAGTTAGATTATGACT+AGG - chr3_1:9758875-9758894 Msa0347990:CDS 30.0%
AGGAGATAATGAGATGTAAT+CGG - chr3_1:9758940-9758959 Msa0347990:CDS 30.0%
TGTAGCTTATCTTTCATCAA+GGG - chr3_1:9759034-9759053 Msa0347990:CDS 30.0%
TACTGTTGAAAGATGAGTTA+GGG + chr3_1:9759124-9759143 None:intergenic 30.0%
ATACTGTTGAAAGATGAGTT+AGG + chr3_1:9759125-9759144 None:intergenic 30.0%
!! ATTGATTGGTCTAAATAAGC+AGG - chr3_1:9759147-9759166 Msa0347990:intron 30.0%
!! TCTAAATAAGCAGGTATTGA+TGG - chr3_1:9759156-9759175 Msa0347990:intron 30.0%
!!! AGGTATTGATTTTGAAAAGG+GGG - chr3_1:9759228-9759247 Msa0347990:intron 30.0%
!! ATTTTGAAAAGGGGGAAATA+GGG - chr3_1:9759236-9759255 Msa0347990:intron 30.0%
TTAGCTAGTGGAAAAAAGAT+TGG + chr3_1:9759278-9759297 None:intergenic 30.0%
TCCAAAACCAAATCTTCAAT+GGG - chr3_1:9759334-9759353 Msa0347990:intron 30.0%
AGATTACTATGTAGTGATAG+AGG + chr3_1:9759411-9759430 None:intergenic 30.0%
AAGAAGAATCGATCAAATAG+AGG + chr3_1:9759514-9759533 None:intergenic 30.0%
TCTTCTAAATTTGGAGGATT+TGG - chr3_1:9759643-9759662 Msa0347990:intron 30.0%
!!! AGCTAGAGAATTTTTTACGA+GGG + chr3_1:9760277-9760296 None:intergenic 30.0%
!!! AAGCTAGAGAATTTTTTACG+AGG + chr3_1:9760278-9760297 None:intergenic 30.0%
! AACTACACTTGATAACATGT+TGG - chr3_1:9760517-9760536 Msa0347990:intron 30.0%
AACATTGCAATATCAACTGT+GGG + chr3_1:9760641-9760660 None:intergenic 30.0%
AAACATTGCAATATCAACTG+TGG + chr3_1:9760642-9760661 None:intergenic 30.0%
! ATTCTCTTGAGGTTTTTGAA+CGG + chr3_1:9760787-9760806 None:intergenic 30.0%
TGCATCTATAAATTCTCTTG+AGG + chr3_1:9760798-9760817 None:intergenic 30.0%
CAAGAATCTGAAAATTCAAC+TGG - chr3_1:9760896-9760915 Msa0347990:intron 30.0%
ATGTAAAAAGAAGGCAAGAT+GGG - chr3_1:9760960-9760979 Msa0347990:intron 30.0%
! TTCTTTTATGCAGTAGATCT+TGG - chr3_1:9761226-9761245 Msa0347990:intron 30.0%
! AACGGCTGAAAAATCTTTTA+TGG - chr3_1:9761257-9761276 Msa0347990:intron 30.0%
! TATGGATTGATGCTAAAAGT+AGG - chr3_1:9761275-9761294 Msa0347990:intron 30.0%
!! GTAATATAAATTGGTAGTGC+TGG + chr3_1:9761396-9761415 None:intergenic 30.0%
CACACCCAAGTAATATAAAT+TGG + chr3_1:9761405-9761424 None:intergenic 30.0%
TAATAGCCAAGAATATGTTG+CGG + chr3_1:9761449-9761468 None:intergenic 30.0%
! TGGTCAGTAATTATCACTTT+TGG + chr3_1:9761505-9761524 None:intergenic 30.0%
TATGCCATAAGCAAATACAA+TGG + chr3_1:9761576-9761595 None:intergenic 30.0%
TATTTGCTTATGGCATATAC+TGG - chr3_1:9761579-9761598 Msa0347990:intron 30.0%
ATTTGCTTATGGCATATACT+GGG - chr3_1:9761580-9761599 Msa0347990:intron 30.0%
!! GTGATGATTTTGACAATAGA+TGG - chr3_1:9761692-9761711 Msa0347990:intron 30.0%
! CAATAGATGGGAGAAATTTT+TGG - chr3_1:9761705-9761724 Msa0347990:intron 30.0%
TTCTGATACTTGGAATAAAG+TGG - chr3_1:9761963-9761982 Msa0347990:intron 30.0%
GATCTTCTTGAATACTGTAT+GGG + chr3_1:9762040-9762059 None:intergenic 30.0%
! TGTCGGCTATTTGAATATAA+AGG - chr3_1:9762207-9762226 Msa0347990:intron 30.0%
CGTTTCAAAACATATTGAGA+TGG + chr3_1:9762288-9762307 None:intergenic 30.0%
AGATACCCAAAGTAGAAATA+TGG - chr3_1:9762566-9762585 Msa0347990:intron 30.0%
GATACCCAAAGTAGAAATAT+GGG - chr3_1:9762567-9762586 Msa0347990:intron 30.0%
! CTTTCCCATATTTCTACTTT+GGG + chr3_1:9762574-9762593 None:intergenic 30.0%
! ACTTTCCCATATTTCTACTT+TGG + chr3_1:9762575-9762594 None:intergenic 30.0%
GTTATGACAGGAAGAATAAA+AGG + chr3_1:9762664-9762683 None:intergenic 30.0%
GATAGGTTAACTAGTAATGT+AGG + chr3_1:9762771-9762790 None:intergenic 30.0%
TGAGCTTGTAGATTAAATAC+AGG - chr3_1:9762822-9762841 Msa0347990:intron 30.0%
ACGTCATCCTTATAGTTAAA+AGG - chr3_1:9762972-9762991 Msa0347990:intron 30.0%
CAACTGAACAATCAAATAAG+AGG + chr3_1:9763155-9763174 None:intergenic 30.0%
GATTGTTCAGTTGAACTTAA+TGG - chr3_1:9763162-9763181 Msa0347990:intron 30.0%
CTTATACAATCAAAACTTGC+AGG - chr3_1:9763438-9763457 Msa0347990:intron 30.0%
! ATACAACATTAGGGTTAGTA+TGG - chr3_1:9763492-9763511 Msa0347990:intron 30.0%
! ATAATGTTGCTTCTTCATTG+TGG - chr3_1:9763847-9763866 Msa0347990:intron 30.0%
TTTGCCAACATAAACTCAAT+TGG + chr3_1:9764138-9764157 None:intergenic 30.0%
! ATATTACAAAATACTGGCCT+TGG + chr3_1:9764164-9764183 None:intergenic 30.0%
ATATTAATATAGGTGGGGTA+AGG - chr3_1:9764253-9764272 Msa0347990:five_prime_UTR 30.0%
AACAAAACAATCTCTACATG+AGG + chr3_1:9764292-9764311 None:intergenic 30.0%
! TTGTTATTCTTTAGGCTACT+GGG - chr3_1:9764325-9764344 Msa0347990:five_prime_UTR 30.0%
AAAAGATGAAGAGAGAGGAT+TGG - chr3_1:9755144-9755163 Msa0347990:three_prime_UTR 35.0%
! ATGAAAATTGAAGATGGTGG+TGG + chr3_1:9755292-9755311 None:intergenic 35.0%
AGGTATAGAATTGTATGAGG+TGG - chr3_1:9755698-9755717 Msa0347990:intron 35.0%
! CACTCTTTTATTAGAGGCAA+AGG - chr3_1:9755792-9755811 Msa0347990:intron 35.0%
! TTTGTCGATTATCGACACTA+TGG - chr3_1:9755920-9755939 Msa0347990:intron 35.0%
! AACAAACAAGAAGCACAACA+AGG + chr3_1:9756643-9756662 None:intergenic 35.0%
!! AATTGTGTTGGTTGACATTG+CGG - chr3_1:9756683-9756702 Msa0347990:intron 35.0%
! CTCAGTTTTCGACTTACATA+GGG + chr3_1:9756899-9756918 None:intergenic 35.0%
CCAATAAAATGACCAAGAAG+GGG + chr3_1:9757105-9757124 None:intergenic 35.0%
CTCCAATAAAATGACCAAGA+AGG + chr3_1:9757107-9757126 None:intergenic 35.0%
!! TGGTCATTTTATTGGAGTCA+TGG - chr3_1:9757110-9757129 Msa0347990:CDS 35.0%
! ATTGGAGTCATGGTTTTTGA+TGG - chr3_1:9757120-9757139 Msa0347990:CDS 35.0%
TGTAATGCTGCTAGAATGTA+AGG - chr3_1:9757191-9757210 Msa0347990:CDS 35.0%
! ATTATAGCACAAGTTGGCAA+TGG - chr3_1:9757275-9757294 Msa0347990:CDS 35.0%
AAGCCACTTCTGTTCTTATA+TGG - chr3_1:9757303-9757322 Msa0347990:CDS 35.0%
!!! AGGTCAATTTTAGAACAAGC+GGG - chr3_1:9757416-9757435 Msa0347990:CDS 35.0%
! ATCATATAGAAGGGAAGCAT+TGG + chr3_1:9757499-9757518 None:intergenic 35.0%
TAAGCTAACGGTATTTGACT+TGG - chr3_1:9757554-9757573 Msa0347990:CDS 35.0%
ATGCTTTCTTGCATAGCTAA+AGG - chr3_1:9757699-9757718 Msa0347990:CDS 35.0%
!! TAGAGTTAACTGCTTTTGCT+AGG - chr3_1:9757775-9757794 Msa0347990:CDS 35.0%
CAAAATCAGGGTATATTTGC+TGG - chr3_1:9757853-9757872 Msa0347990:CDS 35.0%
TTTGTGCTCTGCTAATACTT+AGG - chr3_1:9757995-9758014 Msa0347990:CDS 35.0%
TTATGATGCAAGAATTGGTG+TGG + chr3_1:9758394-9758413 None:intergenic 35.0%
GTGCTTTATGATGCAAGAAT+TGG + chr3_1:9758399-9758418 None:intergenic 35.0%
TGGATAAACAGAATGATACC+TGG + chr3_1:9758421-9758440 None:intergenic 35.0%
!! TTATCCATTTTAGGTGGGAA+TGG - chr3_1:9758434-9758453 Msa0347990:CDS 35.0%
!! TATCCATTTTAGGTGGGAAT+GGG - chr3_1:9758435-9758454 Msa0347990:CDS 35.0%
ACAAAAAGAAAATTGGAGGG+AGG + chr3_1:9758480-9758499 None:intergenic 35.0%
TATCATTGAAGTGGGAAACA+AGG + chr3_1:9758517-9758536 None:intergenic 35.0%
!! TGTTGGTTTATGATCCAACT+TGG - chr3_1:9758619-9758638 Msa0347990:CDS 35.0%
TAAAACCACTTGAACCAAGT+TGG + chr3_1:9758636-9758655 None:intergenic 35.0%
CATATATAGTGAGTGTTCTG+AGG - chr3_1:9758703-9758722 Msa0347990:CDS 35.0%
TACTCAGTCAATCTGGAAAT+GGG + chr3_1:9758741-9758760 None:intergenic 35.0%
TTACTCAGTCAATCTGGAAA+TGG + chr3_1:9758742-9758761 None:intergenic 35.0%
GGAAGATATATAAGCCTTAG+TGG - chr3_1:9758771-9758790 Msa0347990:CDS 35.0%
!! TACAGCTTTGAAAACCACTA+AGG + chr3_1:9758788-9758807 None:intergenic 35.0%
!!! AACTCTATGCTTTTTCTGGA+AGG + chr3_1:9758864-9758883 None:intergenic 35.0%
CTGTAGCTTATCTTTCATCA+AGG - chr3_1:9759033-9759052 Msa0347990:CDS 35.0%
GTAGCTTATCTTTCATCAAG+GGG - chr3_1:9759035-9759054 Msa0347990:CDS 35.0%
!! AAGAAAAGCACTTGATGCTT+TGG - chr3_1:9759093-9759112 Msa0347990:five_prime_UTR 35.0%
!! GATTTTGAAAAGGGGGAAAT+AGG - chr3_1:9759235-9759254 Msa0347990:intron 35.0%
TCATTAGTCAACTTAGCTAG+TGG + chr3_1:9759290-9759309 None:intergenic 35.0%
GTCCAAAACCAAATCTTCAA+TGG - chr3_1:9759333-9759352 Msa0347990:intron 35.0%
CCAAAACCAAATCTTCAATG+GGG - chr3_1:9759335-9759354 Msa0347990:intron 35.0%
CTTCTAACTAGGGATTCTAT+TGG - chr3_1:9759454-9759473 Msa0347990:intron 35.0%
AGGAAACTTATAGAAGTTGC+CGG + chr3_1:9759617-9759636 None:intergenic 35.0%
TCCTCCAAATTTAGAAGAAG+TGG + chr3_1:9759641-9759660 None:intergenic 35.0%
TGGCAGGAAACTTATAGAAA+TGG + chr3_1:9759670-9759689 None:intergenic 35.0%
TGCTCCTAATTTAGAAGAAG+TGG + chr3_1:9759690-9759709 None:intergenic 35.0%
ATGAGCTAACTACTTGATCA+GGG - chr3_1:9759771-9759790 Msa0347990:intron 35.0%
!!! CTAGAGAATTTTTTACGAGG+GGG + chr3_1:9760275-9760294 None:intergenic 35.0%
!!! GCTAGAGAATTTTTTACGAG+GGG + chr3_1:9760276-9760295 None:intergenic 35.0%
! ATCAAGAAGTGTAACAGACA+TGG + chr3_1:9760368-9760387 None:intergenic 35.0%
ATGTCTGTTACACTTCTTGA+TGG - chr3_1:9760367-9760386 Msa0347990:intron 35.0%
AAAGCAAGTTGTTCTCATCA+TGG - chr3_1:9760439-9760458 Msa0347990:intron 35.0%
TCATCATGGATATAGATCTC+AGG - chr3_1:9760453-9760472 Msa0347990:intron 35.0%
! ACACTTGATAACATGTTGGA+AGG - chr3_1:9760521-9760540 Msa0347990:intron 35.0%
GGTGAAGAAAAATTGCACAA+TGG - chr3_1:9760542-9760561 Msa0347990:intron 35.0%
GAAGAAAAATTGCACAATGG+AGG - chr3_1:9760545-9760564 Msa0347990:intron 35.0%
AAAATTGCACAATGGAGGTA+TGG - chr3_1:9760550-9760569 Msa0347990:intron 35.0%
! ATTGAGGTACATGCTCTAAA+TGG - chr3_1:9760599-9760618 Msa0347990:intron 35.0%
ACATTGCAATATCAACTGTG+GGG + chr3_1:9760640-9760659 None:intergenic 35.0%
CAAGAATATGCTCGATCAAT+GGG - chr3_1:9760734-9760753 Msa0347990:intron 35.0%
! AAGTTTGCTTGTTCCAGATA+TGG - chr3_1:9760818-9760837 Msa0347990:intron 35.0%
CAAGCATGCATGTAAAAAGA+AGG - chr3_1:9760951-9760970 Msa0347990:intron 35.0%
CATGTAAAAAGAAGGCAAGA+TGG - chr3_1:9760959-9760978 Msa0347990:intron 35.0%
!! GGTTATTCATAGCTTTGTGA+AGG - chr3_1:9760988-9761007 Msa0347990:intron 35.0%
AAGAAGAATGTATGCTGTGA+TGG - chr3_1:9761057-9761076 Msa0347990:intron 35.0%
GTTTGCAGAATACAAAACTG+TGG - chr3_1:9761087-9761106 Msa0347990:intron 35.0%
TAAAGTTCGTAATTTGGGTC+TGG - chr3_1:9761141-9761160 Msa0347990:intron 35.0%
ATTCTTGGCTATTACAGACA+TGG - chr3_1:9761455-9761474 Msa0347990:intron 35.0%
!! CCATGACATGACTTTGAAAT+CGG - chr3_1:9761522-9761541 Msa0347990:intron 35.0%
CTTGCCATTGTATTTGCTTA+TGG - chr3_1:9761569-9761588 Msa0347990:intron 35.0%
TTTGCTTATGGCATATACTG+GGG - chr3_1:9761581-9761600 Msa0347990:intron 35.0%
TGTATGAAGATCGCAAGTTA+TGG - chr3_1:9761767-9761786 Msa0347990:intron 35.0%
GTATGAAGATCGCAAGTTAT+GGG - chr3_1:9761768-9761787 Msa0347990:intron 35.0%
AACACATCCTTCATGAATGT+TGG + chr3_1:9761796-9761815 None:intergenic 35.0%
TTCATGAAGGATGTGTTCTT+AGG - chr3_1:9761799-9761818 Msa0347990:intron 35.0%
ATTGACACTTTCAGATCGTT+GGG + chr3_1:9761839-9761858 None:intergenic 35.0%
AATTGACACTTTCAGATCGT+TGG + chr3_1:9761840-9761859 None:intergenic 35.0%
CAAAAGCAGATTCTGATACT+TGG - chr3_1:9761953-9761972 Msa0347990:intron 35.0%
!! ACACTCTTTTCTAAAGGTGA+AGG + chr3_1:9762003-9762022 None:intergenic 35.0%
!! CTTTAGAAAAGAGTGTTGCA+GGG - chr3_1:9762007-9762026 Msa0347990:intron 35.0%
GGATCTTCTTGAATACTGTA+TGG + chr3_1:9762041-9762060 None:intergenic 35.0%
AAGATCCAAGCTGAGATTAT+TGG - chr3_1:9762054-9762073 Msa0347990:intron 35.0%
ATGAGACAAACATTGTTCAC+AGG - chr3_1:9762112-9762131 Msa0347990:intron 35.0%
TGAGACAAACATTGTTCACA+GGG - chr3_1:9762113-9762132 Msa0347990:intron 35.0%
!!! AAACAGAGACTTTTTTGTCG+TGG - chr3_1:9762152-9762171 Msa0347990:intron 35.0%
GGTGAATGAAGTAAAATCAG+AGG - chr3_1:9762173-9762192 Msa0347990:intron 35.0%
TTATCTTTGTCGACATGCAT+TGG - chr3_1:9762230-9762249 Msa0347990:intron 35.0%
! TTGGTGGTTCTTCAATATTC+TGG - chr3_1:9762249-9762268 Msa0347990:intron 35.0%
!!! CTCAATATGTTTTGAAACGG+TGG - chr3_1:9762289-9762308 Msa0347990:intron 35.0%
AGAAGAATCTGAACATATGC+TGG - chr3_1:9762344-9762363 Msa0347990:intron 35.0%
ATCACTAAAATTGAGCGAAG+AGG - chr3_1:9762401-9762420 Msa0347990:intron 35.0%
TCACTAAAATTGAGCGAAGA+GGG - chr3_1:9762402-9762421 Msa0347990:intron 35.0%
ACTTTGGGTATCTTCTTCAA+TGG + chr3_1:9762559-9762578 None:intergenic 35.0%
ACTAGACAACATGCAACAAA+TGG - chr3_1:9762737-9762756 Msa0347990:intron 35.0%
AGGTTAACTAGTAATGTAGG+AGG + chr3_1:9762768-9762787 None:intergenic 35.0%
TACTATATACGTGAACCTAG+AGG - chr3_1:9762889-9762908 Msa0347990:intron 35.0%
TTAGTGAAACATACCAAACC+AGG + chr3_1:9763376-9763395 None:intergenic 35.0%
TGGTTTCGCATACAACATTA+GGG - chr3_1:9763483-9763502 Msa0347990:intron 35.0%
CATTATAATCCTTGAAGTCG+CGG - chr3_1:9763558-9763577 Msa0347990:intron 35.0%
ATTATAATCCTTGAAGTCGC+GGG - chr3_1:9763559-9763578 Msa0347990:intron 35.0%
!! GACTCTGAAATTGTCTCAAA+CGG - chr3_1:9763679-9763698 Msa0347990:intron 35.0%
ATGTATAGGCTAGGAAAATG+AGG - chr3_1:9764067-9764086 Msa0347990:intron 35.0%
TAGAGAATGGAATACCTCAA+AGG - chr3_1:9764112-9764131 Msa0347990:intron 35.0%
!! ATAAACTCAATTGGCCTTTG+AGG + chr3_1:9764129-9764148 None:intergenic 35.0%
AAGGCCAATTGAGTTTATGT+TGG - chr3_1:9764131-9764150 Msa0347990:intron 35.0%
TTTATGTTGGCAAATCTCCA+AGG - chr3_1:9764144-9764163 Msa0347990:intron 35.0%
!! CTTGTTATTCTTTAGGCTAC+TGG - chr3_1:9764324-9764343 Msa0347990:five_prime_UTR 35.0%
TGTTATTCTTTAGGCTACTG+GGG - chr3_1:9764326-9764345 Msa0347990:five_prime_UTR 35.0%
GCAAGAAAAGATGAAGAGAG+AGG - chr3_1:9755139-9755158 Msa0347990:three_prime_UTR 40.0%
TGATGATCTGCAACAGAAAG+TGG + chr3_1:9755263-9755282 None:intergenic 40.0%
TGTTAACCTTCCGGTTAATC+CGG - chr3_1:9755531-9755550 Msa0347990:intron 40.0%
! TGCTTTGGTTCGAGTTAGTT+AGG - chr3_1:9755678-9755697 Msa0347990:intron 40.0%
! AGAGTGCTTACATATAGGGA+CGG + chr3_1:9755778-9755797 None:intergenic 40.0%
!! GCAAAGGGTGCTTACATATA+GGG - chr3_1:9755808-9755827 Msa0347990:intron 40.0%
ATAGTGAGCTTGACGAAATC+AGG - chr3_1:9756103-9756122 Msa0347990:intron 40.0%
TAGTGAGCTTGACGAAATCA+GGG - chr3_1:9756104-9756123 Msa0347990:intron 40.0%
ATAGTGAGCTTGACGAAATC+AGG - chr3_1:9756103-9756122 Msa0347990:intron 40.0%
TAGTGAGCTTGACGAAATCA+GGG - chr3_1:9756104-9756123 Msa0347990:intron 40.0%
GAAAACAGGCTGAATTGTGT+TGG - chr3_1:9756671-9756690 Msa0347990:intron 40.0%
TATCTACGCACGTATATGAG+AGG - chr3_1:9756816-9756835 Msa0347990:CDS 40.0%
! GCTCAGTTTTCGACTTACAT+AGG + chr3_1:9756900-9756919 None:intergenic 40.0%
CAGCCACAACATTGGTATAA+TGG + chr3_1:9757077-9757096 None:intergenic 40.0%
!! CCCCTTCTTGGTCATTTTAT+TGG - chr3_1:9757102-9757121 Msa0347990:CDS 40.0%
CTCATGACCATCAAGTCAAA+TGG - chr3_1:9757453-9757472 Msa0347990:CDS 40.0%
!! GTTGTTGCCATTTGACTTGA+TGG + chr3_1:9757463-9757482 None:intergenic 40.0%
!! AAGCATTGGTGCAACAGTTT+AGG + chr3_1:9757485-9757504 None:intergenic 40.0%
CTTTCTTGCATAGCTAAAGG+AGG - chr3_1:9757702-9757721 Msa0347990:CDS 40.0%
!! AGTTAACTGCTTTTGCTAGG+AGG - chr3_1:9757778-9757797 Msa0347990:CDS 40.0%
! GGTATATTTGCTGGCATAAC+AGG - chr3_1:9757862-9757881 Msa0347990:CDS 40.0%
ATTCCCTGACTAAAGTTGCA+TGG - chr3_1:9758045-9758064 Msa0347990:CDS 40.0%
AAGCCATGCAACTTTAGTCA+GGG + chr3_1:9758051-9758070 None:intergenic 40.0%
TAAGCCATGCAACTTTAGTC+AGG + chr3_1:9758052-9758071 None:intergenic 40.0%
ATCCCACTTTCAGACTAACA+GGG + chr3_1:9758107-9758126 None:intergenic 40.0%
! TTCTTGCATCATAAAGCACC+AGG - chr3_1:9758400-9758419 Msa0347990:CDS 40.0%
AATCCCATTCCCACCTAAAA+TGG + chr3_1:9758441-9758460 None:intergenic 40.0%
TTTCCAGTTCCACTACATGT+TGG - chr3_1:9758542-9758561 Msa0347990:CDS 40.0%
! AAACCAACATGTAGTGGAAC+TGG + chr3_1:9758548-9758567 None:intergenic 40.0%
ATGATCCAACTTGGTTCAAG+TGG - chr3_1:9758628-9758647 Msa0347990:CDS 40.0%
ACACTGTTACTCAGTCAATC+TGG + chr3_1:9758748-9758767 None:intergenic 40.0%
ATTGACTGAGTAACAGTGTG+TGG - chr3_1:9758749-9758768 Msa0347990:CDS 40.0%
TTGACTGAGTAACAGTGTGT+GGG - chr3_1:9758750-9758769 Msa0347990:CDS 40.0%
!! AGCAGGTATTGATGGTGAAA+AGG - chr3_1:9759164-9759183 Msa0347990:intron 40.0%
!! GCAGGTATTGATGGTGAAAA+GGG - chr3_1:9759165-9759184 Msa0347990:intron 40.0%
!! CAGGTATTGATGGTGAAAAG+GGG - chr3_1:9759166-9759185 Msa0347990:intron 40.0%
!! AGGTATTGATGGTGAAAAGG+GGG - chr3_1:9759167-9759186 Msa0347990:intron 40.0%
!!! TGGTTTTGGACAAACCATCA+TGG + chr3_1:9759324-9759343 None:intergenic 40.0%
!! CCCCATTGAAGATTTGGTTT+TGG + chr3_1:9759338-9759357 None:intergenic 40.0%
AAATGGCCCCATTGAAGATT+TGG + chr3_1:9759344-9759363 None:intergenic 40.0%
GAATCCCTAGTTAGAAGAGT+CGG + chr3_1:9759451-9759470 None:intergenic 40.0%
GATGAGAGGAAGAATGTTTC+AGG + chr3_1:9759553-9759572 None:intergenic 40.0%
GAAACTTATAGAAGTTGCCG+GGG + chr3_1:9759615-9759634 None:intergenic 40.0%
GGAAACTTATAGAAGTTGCC+GGG + chr3_1:9759616-9759635 None:intergenic 40.0%
CCAAATTTAGAAGAAGTGGC+AGG + chr3_1:9759637-9759656 None:intergenic 40.0%
! CCTGCCACTTCTTCTAAATT+TGG - chr3_1:9759634-9759653 Msa0347990:intron 40.0%
GCCACTTCTTCTAAATTTGG+AGG - chr3_1:9759637-9759656 Msa0347990:intron 40.0%
CCTAATTTAGAAGAAGTGGC+AGG + chr3_1:9759686-9759705 None:intergenic 40.0%
! CCTGCCACTTCTTCTAAATT+AGG - chr3_1:9759634-9759653 Msa0347990:intron 40.0%
CATGAGCTAACTACTTGATC+AGG - chr3_1:9759770-9759789 Msa0347990:intron 40.0%
TGAGCTAACTACTTGATCAG+GGG - chr3_1:9759772-9759791 Msa0347990:intron 40.0%
GTGCAATGCATCAAGTACAA+CGG + chr3_1:9760303-9760322 None:intergenic 40.0%
TCTTTCTCATGTTCACCAGT+GGG + chr3_1:9760482-9760501 None:intergenic 40.0%
TTCTTTCTCATGTTCACCAG+TGG + chr3_1:9760483-9760502 None:intergenic 40.0%
TATGGTTGAAGCTGGTATTG+AGG - chr3_1:9760583-9760602 Msa0347990:intron 40.0%
CATTGCAATATCAACTGTGG+GGG + chr3_1:9760639-9760658 None:intergenic 40.0%
! ACAAATCTTGAGCCACTTTC+TGG - chr3_1:9760671-9760690 Msa0347990:intron 40.0%
TCGAATTCCATACCAGAAAG+TGG + chr3_1:9760686-9760705 None:intergenic 40.0%
GTATGGAATTCGAGTCTCAT+GGG - chr3_1:9760693-9760712 Msa0347990:intron 40.0%
TATGGAATTCGAGTCTCATG+GGG - chr3_1:9760694-9760713 Msa0347990:intron 40.0%
CCATTGATCGAGCATATTCT+TGG + chr3_1:9760736-9760755 None:intergenic 40.0%
CCAAGAATATGCTCGATCAA+TGG - chr3_1:9760733-9760752 Msa0347990:intron 40.0%
!! CTCTCGTTTTGTTCCATATC+TGG + chr3_1:9760834-9760853 None:intergenic 40.0%
AAAGAAGGCAAGATGGGAAA+TGG - chr3_1:9760966-9760985 Msa0347990:intron 40.0%
AAGAAGGCAAGATGGGAAAT+GGG - chr3_1:9760967-9760986 Msa0347990:intron 40.0%
TGTTTGTTCACTTACTGCCT+GGG + chr3_1:9761038-9761057 None:intergenic 40.0%
TTGTTTGTTCACTTACTGCC+TGG + chr3_1:9761039-9761058 None:intergenic 40.0%
TTTGTATTCTGCAAACTGCC+TGG + chr3_1:9761083-9761102 None:intergenic 40.0%
GCAGAATACAAAACTGTGGT+TGG - chr3_1:9761091-9761110 Msa0347990:intron 40.0%
! GTAATTTGGGTCTGGAGTTT+GGG - chr3_1:9761149-9761168 Msa0347990:intron 40.0%
! TAATTTGGGTCTGGAGTTTG+GGG - chr3_1:9761150-9761169 Msa0347990:intron 40.0%
TTATGCAGTAGATCTTGGTG+AGG - chr3_1:9761231-9761250 Msa0347990:intron 40.0%
TAGATCTTGGTGAGGATCAA+CGG - chr3_1:9761239-9761258 Msa0347990:intron 40.0%
!! ATGCCTCTTGCACTTTTTGT+TGG - chr3_1:9761364-9761383 Msa0347990:intron 40.0%
!! TGCCTCTTGCACTTTTTGTT+GGG - chr3_1:9761365-9761384 Msa0347990:intron 40.0%
GGCACTTTCATCTGATATCA+AGG + chr3_1:9761428-9761447 None:intergenic 40.0%
!! AAAGTGCCGCAACATATTCT+TGG - chr3_1:9761440-9761459 Msa0347990:intron 40.0%
CTATTACAGACATGGCTGAA+AGG - chr3_1:9761463-9761482 Msa0347990:intron 40.0%
CCGATTTCAAAGTCATGTCA+TGG + chr3_1:9761525-9761544 None:intergenic 40.0%
CAAATACAATGGCAAGCACT+AGG + chr3_1:9761565-9761584 None:intergenic 40.0%
ATGAAGGATGTGTTCTTAGG+TGG - chr3_1:9761802-9761821 Msa0347990:intron 40.0%
ACAGTATGAAACCATCTTGC+AGG - chr3_1:9761912-9761931 Msa0347990:intron 40.0%
! CCTGCAACACTCTTTTCTAA+AGG + chr3_1:9762009-9762028 None:intergenic 40.0%
!! CCTTTAGAAAAGAGTGTTGC+AGG - chr3_1:9762006-9762025 Msa0347990:intron 40.0%
CTTGTCATCCTAAACTTGAC+AGG - chr3_1:9762085-9762104 Msa0347990:intron 40.0%
!! CAGAGGTGTCTTGTATATGT+CGG - chr3_1:9762190-9762209 Msa0347990:intron 40.0%
ATTGAGATGGGAACACTGAA+TGG + chr3_1:9762275-9762294 None:intergenic 40.0%
GGACAAAAGATGCAAAAGTC+AGG - chr3_1:9762310-9762329 Msa0347990:intron 40.0%
TGCAAAAGTCAGGAATGTCA+CGG - chr3_1:9762320-9762339 Msa0347990:intron 40.0%
! AATCTGAACATATGCTGGCT+AGG - chr3_1:9762349-9762368 Msa0347990:intron 40.0%
! ATCTGAACATATGCTGGCTA+GGG - chr3_1:9762350-9762369 Msa0347990:intron 40.0%
TGCATTCCATGCACTAAATG+AGG - chr3_1:9762452-9762471 Msa0347990:intron 40.0%
TAACCTCCTTGTTGGATTGT+AGG - chr3_1:9762680-9762699 Msa0347990:intron 40.0%
AGTTCACCTACAATCCAACA+AGG + chr3_1:9762689-9762708 None:intergenic 40.0%
TGTTGGATTGTAGGTGAACT+CGG - chr3_1:9762689-9762708 Msa0347990:intron 40.0%
AGGCAGAAGTGATGAATGTT+GGG - chr3_1:9762712-9762731 Msa0347990:intron 40.0%
GTAACCCTCGAAGGTTATTA+TGG - chr3_1:9763033-9763052 Msa0347990:intron 40.0%
CCAACACGTGATGATTACTA+CGG - chr3_1:9763187-9763206 Msa0347990:intron 40.0%
CAACACGTGATGATTACTAC+GGG - chr3_1:9763188-9763207 Msa0347990:intron 40.0%
CTGGTTTCGCATACAACATT+AGG - chr3_1:9763482-9763501 Msa0347990:intron 40.0%
CGCGACTTCAAGGATTATAA+TGG + chr3_1:9763560-9763579 None:intergenic 40.0%
TTATAATCCTTGAAGTCGCG+GGG - chr3_1:9763560-9763579 Msa0347990:intron 40.0%
AACTGTGGTGCTCTTACATT+AGG + chr3_1:9763882-9763901 None:intergenic 40.0%
TGCTCATCTGATGTAGAGAA+TGG - chr3_1:9764099-9764118 Msa0347990:intron 40.0%
GTATGAGCGTGAGATGGTTA+GGG + chr3_1:9755200-9755219 None:intergenic 45.0%
TGTATGAGCGTGAGATGGTT+AGG + chr3_1:9755201-9755220 None:intergenic 45.0%
TTAGAAGAAGAGTTCACGCG+AGG + chr3_1:9755224-9755243 None:intergenic 45.0%
ATCTGCAACAGAAAGTGGTG+TGG + chr3_1:9755258-9755277 None:intergenic 45.0%
!! ATTGAAGATGGTGGTGGTGA+TGG + chr3_1:9755286-9755305 None:intergenic 45.0%
CCTATCTTTCGATCGAACTC+CGG + chr3_1:9755553-9755572 None:intergenic 45.0%
TCCACTCAAGAATCGAACTC+AGG - chr3_1:9755593-9755612 Msa0347990:three_prime_UTR 45.0%
ACCTGAGTTCGATTCTTGAG+TGG + chr3_1:9755597-9755616 None:intergenic 45.0%
TGCTTACATATAGGGACGGA+GGG + chr3_1:9755816-9755835 None:intergenic 45.0%
!! GGCAAAGGGTGCTTACATAT+AGG - chr3_1:9755807-9755826 Msa0347990:intron 45.0%
! AGGGTGCTTACATATAGGGA+CGG - chr3_1:9755812-9755831 Msa0347990:intron 45.0%
TGCTTACATATAGGGACGGA+GGG - chr3_1:9755816-9755835 Msa0347990:intron 45.0%
GTGATCGCGAATGATGACAT+TGG - chr3_1:9756059-9756078 Msa0347990:CDS 45.0%
! TTGTGATGGAGTTGTGTGTG+TGG - chr3_1:9756529-9756548 Msa0347990:intron 45.0%
! GCTAGGCTTCGTCTTTTTCT+TGG - chr3_1:9757044-9757063 Msa0347990:CDS 45.0%
! TTGCCCTGTTAGTCTGAAAG+TGG - chr3_1:9758101-9758120 Msa0347990:CDS 45.0%
! TGCCCTGTTAGTCTGAAAGT+GGG - chr3_1:9758102-9758121 Msa0347990:CDS 45.0%
CATCCCACTTTCAGACTAAC+AGG + chr3_1:9758108-9758127 None:intergenic 45.0%
TGTCCATCAGGCATTCACTT+TGG - chr3_1:9758274-9758293 Msa0347990:CDS 45.0%
TCACCAAAGTGAATGCCTGA+TGG + chr3_1:9758280-9758299 None:intergenic 45.0%
AAGAATTGGTGTGGCTAGGA+AGG + chr3_1:9758385-9758404 None:intergenic 45.0%
ATGCAAGAATTGGTGTGGCT+AGG + chr3_1:9758389-9758408 None:intergenic 45.0%
CATGGAAGAAACAGACTTGC+AGG - chr3_1:9758920-9758939 Msa0347990:CDS 45.0%
!! GGTATTGATGGTGAAAAGGG+GGG - chr3_1:9759168-9759187 Msa0347990:intron 45.0%
TGAATAGCCTGATGCCATGA+TGG - chr3_1:9759307-9759326 Msa0347990:intron 45.0%
!! AGACGAAGAAAGCATCGAAG+TGG + chr3_1:9759387-9759406 None:intergenic 45.0%
TCCTCTCATCCAACCATCTA+TGG - chr3_1:9759563-9759582 Msa0347990:intron 45.0%
ACCATAGATGGTTGGATGAG+AGG + chr3_1:9759567-9759586 None:intergenic 45.0%
GTAAACCAGAGGACCATAGA+TGG + chr3_1:9759579-9759598 None:intergenic 45.0%
ATAGATCTCAGGTTACCCAC+TGG - chr3_1:9760464-9760483 Msa0347990:intron 45.0%
AGGTATGGACGACAGACATA+TGG - chr3_1:9760565-9760584 Msa0347990:intron 45.0%
GACAGACATATGGTTGAAGC+TGG - chr3_1:9760575-9760594 Msa0347990:intron 45.0%
! GAGGTACATGCTCTAAATGG+TGG - chr3_1:9760602-9760621 Msa0347990:intron 45.0%
! TCTTGAGCCACTTTCTGGTA+TGG - chr3_1:9760676-9760695 Msa0347990:intron 45.0%
GGTATGGAATTCGAGTCTCA+TGG - chr3_1:9760692-9760711 Msa0347990:intron 45.0%
! CGTAATTTGGGTCTGGAGTT+TGG - chr3_1:9761148-9761167 Msa0347990:intron 45.0%
!! GCCTCTTGCACTTTTTGTTG+GGG - chr3_1:9761366-9761385 Msa0347990:intron 45.0%
! ACCCCAACAAAAAGTGCAAG+AGG + chr3_1:9761370-9761389 None:intergenic 45.0%
CTTATGGCATATACTGGGGA+AGG - chr3_1:9761585-9761604 Msa0347990:intron 45.0%
GGATAGATTTGAGCTTCGAC+AGG - chr3_1:9761726-9761745 Msa0347990:intron 45.0%
ATGGGCACCAACATTCATGA+AGG - chr3_1:9761786-9761805 Msa0347990:intron 45.0%
ATGAAACCATCTTGCAGGAC+AGG - chr3_1:9761917-9761936 Msa0347990:intron 45.0%
TTCATACCTGTCCTGCAAGA+TGG + chr3_1:9761926-9761945 None:intergenic 45.0%
CTGCACCAATAATCTCAGCT+TGG + chr3_1:9762062-9762081 None:intergenic 45.0%
AGCTGAGATTATTGGTGCAG+TGG - chr3_1:9762062-9762081 Msa0347990:intron 45.0%
TCATCCTAAACTTGACAGGC+AGG - chr3_1:9762089-9762108 Msa0347990:intron 45.0%
TCATCCTGCCTGTCAAGTTT+AGG + chr3_1:9762096-9762115 None:intergenic 45.0%
TGTTCACAGGGTGCATGATA+TGG - chr3_1:9762125-9762144 Msa0347990:intron 45.0%
TCTTTGTCGACATGCATTGG+TGG - chr3_1:9762233-9762252 Msa0347990:intron 45.0%
GCAAAAGTCAGGAATGTCAC+GGG - chr3_1:9762321-9762340 Msa0347990:intron 45.0%
TGTGTGCCTCATTTAGTGCA+TGG + chr3_1:9762461-9762480 None:intergenic 45.0%
CTACAGAAGCTGGTACATCA+GGG - chr3_1:9762517-9762536 Msa0347990:intron 45.0%
TACAGAAGCTGGTACATCAG+GGG - chr3_1:9762518-9762537 Msa0347990:intron 45.0%
TCCTGTCATAACCTCCTTGT+TGG - chr3_1:9762672-9762691 Msa0347990:intron 45.0%
TCCAACAAGGAGGTTATGAC+AGG + chr3_1:9762676-9762695 None:intergenic 45.0%
TCACCTACAATCCAACAAGG+AGG + chr3_1:9762686-9762705 None:intergenic 45.0%
GAGGCAGAAGTGATGAATGT+TGG - chr3_1:9762711-9762730 Msa0347990:intron 45.0%
GGCAGAAGTGATGAATGTTG+GGG - chr3_1:9762713-9762732 Msa0347990:intron 45.0%
CGCACCATAATAACCTTCGA+GGG + chr3_1:9763040-9763059 None:intergenic 45.0%
CCGTAGTAATCATCACGTGT+TGG + chr3_1:9763190-9763209 None:intergenic 45.0%
GGGAATCAACAGACTCTTCA+AGG - chr3_1:9763208-9763227 Msa0347990:intron 45.0%
TCAACAGACTCTTCAAGGAC+TGG - chr3_1:9763213-9763232 Msa0347990:intron 45.0%
! GGACTGGTGTGTAGAAGAAA+TGG - chr3_1:9763229-9763248 Msa0347990:intron 45.0%
! CTGGTTGGTATGGAACTCAT+TGG + chr3_1:9763319-9763338 None:intergenic 45.0%
TAATAACCATCGTGGCTGGT+TGG + chr3_1:9763334-9763353 None:intergenic 45.0%
ACCAGCCACGATGGTTATTA+TGG - chr3_1:9763334-9763353 Msa0347990:intron 45.0%
ACCATAATAACCATCGTGGC+TGG + chr3_1:9763338-9763357 None:intergenic 45.0%
GTGCACCATAATAACCATCG+TGG + chr3_1:9763342-9763361 None:intergenic 45.0%
ACATCAAAGCATGCCTGGTT+TGG - chr3_1:9763360-9763379 Msa0347990:intron 45.0%
TCAAAACTTGCAGGCACAAC+TGG - chr3_1:9763447-9763466 Msa0347990:intron 45.0%
CAACTGGATTTCTTGCGAAC+TGG - chr3_1:9763463-9763482 Msa0347990:intron 45.0%
! TGTTGCTTCTTCATTGTGGC+AGG - chr3_1:9763851-9763870 Msa0347990:intron 45.0%
GATGGATCTTCGTGTAACTG+TGG + chr3_1:9763897-9763916 None:intergenic 45.0%
CGATCGAACTCCGGATTAAC+CGG + chr3_1:9755544-9755563 None:intergenic 50.0%
CCGGAGTTCGATCGAAAGAT+AGG - chr3_1:9755550-9755569 Msa0347990:intron 50.0%
GTGCTTACATATAGGGACGG+AGG + chr3_1:9755815-9755834 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG - chr3_1:9755815-9755834 Msa0347990:intron 50.0%
! GACGGAGGGAGTAGTAGTTT+TGG - chr3_1:9755830-9755849 Msa0347990:intron 50.0%
!!! GGAGGGAGTAGTAGTTTTGG+CGG - chr3_1:9755833-9755852 Msa0347990:intron 50.0%
TGAGCTTGACGAAATCAGGG+TGG - chr3_1:9756107-9756126 Msa0347990:intron 50.0%
TGAGCTTGACGAAATCAGGG+TGG - chr3_1:9756107-9756126 Msa0347990:intron 50.0%
GGGCTTAACAGCCACAACAT+TGG + chr3_1:9757085-9757104 None:intergenic 50.0%
AAAGCACACCTCTGTCCATC+AGG - chr3_1:9758262-9758281 Msa0347990:CDS 50.0%
! AGTGAATGCCTGATGGACAG+AGG + chr3_1:9758273-9758292 None:intergenic 50.0%
GATGGTGAAAAGGGGGGAAA+AGG - chr3_1:9759174-9759193 Msa0347990:intron 50.0%
GGACAAACCATCATGGCATC+AGG + chr3_1:9759317-9759336 None:intergenic 50.0%
AGAAGAGTCGGTCGGTCAAA+TGG + chr3_1:9759439-9759458 None:intergenic 50.0%
! ACCGACCGACTCTTCTAACT+AGG - chr3_1:9759443-9759462 Msa0347990:intron 50.0%
CCCTAGTTAGAAGAGTCGGT+CGG + chr3_1:9759447-9759466 None:intergenic 50.0%
! CCGACCGACTCTTCTAACTA+GGG - chr3_1:9759444-9759463 Msa0347990:intron 50.0%
TCCAACCATCTATGGTCCTC+TGG - chr3_1:9759571-9759590 Msa0347990:intron 50.0%
ACCAGAGGACCATAGATGGT+TGG + chr3_1:9759575-9759594 None:intergenic 50.0%
AGGGGCGAATCCCTTTGATA+GGG - chr3_1:9759790-9759809 Msa0347990:intron 50.0%
GCGAATCCCTTTGATAGGGT+GGG - chr3_1:9759794-9759813 Msa0347990:intron 50.0%
CGAATCCCTTTGATAGGGTG+GGG - chr3_1:9759795-9759814 Msa0347990:intron 50.0%
AGCTACCCCACCCTATCAAA+GGG + chr3_1:9759803-9759822 None:intergenic 50.0%
AAGCTACCCCACCCTATCAA+AGG + chr3_1:9759804-9759823 None:intergenic 50.0%
TTGATAGGGTGGGGTAGCTT+TGG - chr3_1:9759804-9759823 Msa0347990:intron 50.0%
! TCACGAACTTTTACCAGCCC+AGG - chr3_1:9761018-9761037 Msa0347990:intron 50.0%
GAATGTATGCTGTGATGGCC+AGG - chr3_1:9761062-9761081 Msa0347990:intron 50.0%
! CAGACATGGCTGAAAGGTGT+AGG - chr3_1:9761469-9761488 Msa0347990:intron 50.0%
! ACATGGCTGAAAGGTGTAGG+TGG - chr3_1:9761472-9761491 Msa0347990:intron 50.0%
CTTGCAGGACAGGTATGAAG+AGG - chr3_1:9761927-9761946 Msa0347990:intron 50.0%
AGCAAGAGTCCTACAGAAGC+TGG - chr3_1:9762507-9762526 Msa0347990:intron 50.0%
CCTGATGTACCAGCTTCTGT+AGG + chr3_1:9762519-9762538 None:intergenic 50.0%
CCTACAGAAGCTGGTACATC+AGG - chr3_1:9762516-9762535 Msa0347990:intron 50.0%
TGGATTGTAGGTGAACTCGG+AGG - chr3_1:9762692-9762711 Msa0347990:intron 50.0%
AGAACTGCAGTAACCCTCGA+AGG - chr3_1:9763024-9763043 Msa0347990:intron 50.0%
GCGCACCATAATAACCTTCG+AGG + chr3_1:9763041-9763060 None:intergenic 50.0%
CGAGGTGTATGAGCGTGAGA+TGG + chr3_1:9755206-9755225 None:intergenic 55.0%
CGAACTCCGGATTAACCGGA+AGG + chr3_1:9755540-9755559 None:intergenic 55.0%
!! TTGGCGGTGCTATAGCGTAG+TGG - chr3_1:9755849-9755868 Msa0347990:intron 55.0%
GTGGCTGTTAAGCCCCTTCT+TGG - chr3_1:9757090-9757109 Msa0347990:CDS 55.0%
AGAGTCGGTCGGTCAAATGG+AGG + chr3_1:9759436-9759455 None:intergenic 55.0%
CAGGGGCGAATCCCTTTGAT+AGG - chr3_1:9759789-9759808 Msa0347990:intron 55.0%
GGCGAATCCCTTTGATAGGG+TGG - chr3_1:9759793-9759812 Msa0347990:intron 55.0%
TGTTCTGTCGAGCTCGTGGT+CGG + chr3_1:9760874-9760893 None:intergenic 55.0%
TGCTTGTTCTGTCGAGCTCG+TGG + chr3_1:9760878-9760897 None:intergenic 55.0%
TGTTCACTTACTGCCTGGGC+TGG + chr3_1:9761034-9761053 None:intergenic 55.0%
! TTTGGGTCTGGAGTTTGGGG+AGG - chr3_1:9761153-9761172 Msa0347990:intron 55.0%
GCAGGACAGGTATGAAGAGG+AGG - chr3_1:9761930-9761949 Msa0347990:intron 55.0%
GCAACAGAGTGTGCAGGGAA+TGG - chr3_1:9763059-9763078 Msa0347990:intron 55.0%
TCCATACCAACCAGCCACGA+TGG - chr3_1:9763325-9763344 Msa0347990:intron 55.0%
! ACCATCGTGGCTGGTTGGTA+TGG + chr3_1:9763329-9763348 None:intergenic 55.0%
GGTGCACATCAAAGCATGCC+TGG - chr3_1:9763355-9763374 Msa0347990:intron 55.0%
ATCCTTGAAGTCGCGGGGAT+CGG - chr3_1:9763565-9763584 Msa0347990:intron 55.0%
TCGAGCTCGTGGTCGGTTGA+AGG + chr3_1:9760867-9760886 None:intergenic 60.0%
GCTGGTACATCAGGGGCTCA+TGG - chr3_1:9762525-9762544 Msa0347990:intron 60.0%
TGGTGCGCAACAGAGTGTGC+AGG - chr3_1:9763053-9763072 Msa0347990:intron 60.0%
GGTGCGCAACAGAGTGTGCA+GGG - chr3_1:9763054-9763073 Msa0347990:intron 60.0%
GACGCTCAAGCGTGTCTCGA+TGG + chr3_1:9763915-9763934 None:intergenic 60.0%
GTCCGATCCCCGCGACTTCA+AGG + chr3_1:9763570-9763589 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 9755137 9764406 9755137 ID=Msa0347990;Name=Msa0347990
chr3_1 mRNA 9755137 9764406 9755137 ID=Msa0347990-mRNA-1;Parent=Msa0347990;Name=Msa0347990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=224|1|1|1|0.75|0.77|9|357|844
chr3_1 exon 9755137 9755468 9755137 ID=Msa0347990-mRNA-1:exon:2756;Parent=Msa0347990-mRNA-1
chr3_1 exon 9755589 9755670 9755589 ID=Msa0347990-mRNA-1:exon:2755;Parent=Msa0347990-mRNA-1
chr3_1 exon 9756039 9756083 9756039 ID=Msa0347990-mRNA-1:exon:2754;Parent=Msa0347990-mRNA-1
chr3_1 exon 9756162 9756230 9756162 ID=Msa0347990-mRNA-1:exon:2753;Parent=Msa0347990-mRNA-1
chr3_1 exon 9756309 9756371 9756309 ID=Msa0347990-mRNA-1:exon:2752;Parent=Msa0347990-mRNA-1
chr3_1 exon 9756463 9756534 9756463 ID=Msa0347990-mRNA-1:exon:2751;Parent=Msa0347990-mRNA-1
chr3_1 exon 9756785 9756841 9756785 ID=Msa0347990-mRNA-1:exon:2750;Parent=Msa0347990-mRNA-1
chr3_1 exon 9756914 9759120 9756914 ID=Msa0347990-mRNA-1:exon:2749;Parent=Msa0347990-mRNA-1
chr3_1 exon 9764218 9764406 9764218 ID=Msa0347990-mRNA-1:exon:2748;Parent=Msa0347990-mRNA-1
chr3_1 five_prime_UTR 9764218 9764406 9764218 ID=Msa0347990-mRNA-1:five_prime_utr;Parent=Msa0347990-mRNA-1
chr3_1 five_prime_UTR 9759086 9759120 9759086 ID=Msa0347990-mRNA-1:five_prime_utr;Parent=Msa0347990-mRNA-1
chr3_1 CDS 9756914 9759085 9756914 ID=Msa0347990-mRNA-1:cds;Parent=Msa0347990-mRNA-1
chr3_1 CDS 9756785 9756841 9756785 ID=Msa0347990-mRNA-1:cds;Parent=Msa0347990-mRNA-1
chr3_1 CDS 9756463 9756534 9756463 ID=Msa0347990-mRNA-1:cds;Parent=Msa0347990-mRNA-1
chr3_1 CDS 9756309 9756371 9756309 ID=Msa0347990-mRNA-1:cds;Parent=Msa0347990-mRNA-1
chr3_1 CDS 9756162 9756230 9756162 ID=Msa0347990-mRNA-1:cds;Parent=Msa0347990-mRNA-1
chr3_1 CDS 9756039 9756083 9756039 ID=Msa0347990-mRNA-1:cds;Parent=Msa0347990-mRNA-1
chr3_1 CDS 9755614 9755670 9755614 ID=Msa0347990-mRNA-1:cds;Parent=Msa0347990-mRNA-1
chr3_1 three_prime_UTR 9755589 9755613 9755589 ID=Msa0347990-mRNA-1:three_prime_utr;Parent=Msa0347990-mRNA-1
chr3_1 three_prime_UTR 9755137 9755468 9755137 ID=Msa0347990-mRNA-1:three_prime_utr;Parent=Msa0347990-mRNA-1
Gene Sequence

>Msa0347990

ATGGATATAGATCTCAGGTTACCCACTGGTGAACATGAGAAAGAAGAAGAAGAAGAAACAACTACACTTGATAACATGTTGGAAGGTGAAGAAAAATTGCACAATGGAGGTATGGACGACAGACATATGGTTGAAGCTGGTATTGAGGTACATGCTCTAAATGGTGGAGATCTGAATTCCCCCACAGTTGATATTGCAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGTATGGAATTCGAGTCTCATGGGGAAGCTTATTCTTTCTACCAAGAATATGCTCGATCAATGGGATTCAACACTGCAATACAAAATAGTCGCCGTTCAAAAACCTCAAGAGAATTTATAGATGCAAAGTTTGCTTGTTCCAGATATGGAACAAAACGAGAGTACGATAAATCCTTCAACCGACCACGAGCTCGACAGAACAAGCAAGAATCTGAAAATTCAACTGGTCGAAGATCTTGCTCTAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGCAAGATGGGAAATGGGTTATTCATAGCTTTGTGAAGGAGCATAATCACGAACTTTTACCAGCCCAGGCAGTAAGTGAACAAACAAGAAGAATGTATGCTGTGATGGCCAGGCAGTTTGCAGAATACAAAACTGTGGTTGGTATCAAGAATGAAAAGAATCCATTCGATAAAGTTCGTAATTTGGGTCTGGAGTTTGGGGAGGCTAAACTTATGCTTGATTTTTTTATTCAGATGCAAAGTATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAACGGCTGAAAAATCTTTTATGGATTGATGCTAAAAGTAGGCATGACTATATCAACTTCTCTGATGTAGTGTCATTTGATACGACCTATGTTAGAAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGGGTGAACCAGCACTACCAATTTATATTACTTGGGTGTGCCTTGATATCAGATGAAAGTGCCGCAACATATTCTTGGCTATTACAGACATGGCTGAAAGGTGTAGGTGGTCAAGTTCCAAAAGTGATAATTACTGACCATGACATGACTTTGAAATCGGTTATTTCAGATGTATTTCCTAGTGCTTGCCATTGTATTTGCTTATGGCATATACTGGGGAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAAAATGAGAATTTTATGGCAAAGTTTGAAAAATGCATATATAGGTCATTGACAAGTGATGATTTTGACAATAGATGGGAGAAATTTTTGGATAGATTTGAGCTTCGACAGGATGAATGCATGCAGTCTTTGTATGAAGATCGCAAGTTATGGGCACCAACATTCATGAAGGATGTGTTCTTAGGTGGCATGTCTACTGCCCAACGATCTGAAAGTGTCAATTCCTTCTTTGACAAATATGTTCATAGGAAGACCTATGTGCAAGATTTTGTTAAACAGTATGAAACCATCTTGCAGGACAGGTATGAAGAGGAGGCAAAAGCAGATTCTGATACTTGGAATAAAGTGGCAACATTGAAAACTCCTTCACCTTTAGAAAAGAGTGTTGCAGGGATTTGCACCCATACAGTATTCAAGAAGATCCAAGCTGAGATTATTGGTGCAGTGGCTTGTCATCCTAAACTTGACAGGCAGGATGAGACAAACATTGTTCACAGGGTGCATGATATGGAAATAAACAGAGACTTTTTTGTCGTGGTGAATGAAGTAAAATCAGAGGTGTCTTGTATATGTCGGCTATTTGAATATAAAGGTTATCTTTGTCGACATGCATTGGTGGTTCTTCAATATTCTGGCCATTCAGTGTTCCCATCTCAATATGTTTTGAAACGGTGGACAAAAGATGCAAAAGTCAGGAATGTCACGGGAGAAGAATCTGAACATATGCTGGCTAGGGTGCAACGATACAATGATTTATGTCATCGATCACTAAAATTGAGCGAAGAGGGATCATTGTCTCAAGATAGTTATAGTATTGCATTCCATGCACTAAATGAGGCACACAAAAGTTGTGTGAGTGTTAACAATTCTAGCAAGAGTCCTACAGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCATTGAAGAAGATACCCAAAGTAGAAATATGGGAAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCGGAGGCAGAAGTGATGAATGTTGGGGCACTAGACAACATGCAACAAATGGACAAATTCAGCACAAGAACTGCAGTAACCCTCGAAGGTTATTATGGTGCGCAACAGAGTGTGCAGGGAATGTTGAACTTAATGGGACCAACACGTGATGATTACTACGGGAATCAACAGACTCTTCAAGGACTGGGACCAATGAGTTCCATACCAACCAGCCACGATGGTTATTATGGTGCACATCAAAGCATGCCTGGTTTGGCACAACTGGATTTCTTGCGAACTGGTTTCGCATACAACATTAGGGATGAACCTAATGTAAGAGCACCACAGTTACACGAAGATCCATCGAGACACGCTTGA
Protein sequence

>Msa0347990

MDIDLRLPTGEHEKEEEEETTTLDNMLEGEEKLHNGGMDDRHMVEAGIEVHALNGGDLNSPTVDIAMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQESENSTGRRSCSKTDCKASMHVKRRQDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAVMARQFAEYKTVVGIKNEKNPFDKVRNLGLEFGEAKLMLDFFIQMQSMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFILLGCALISDESAATYSWLLQTWLKGVGGQVPKVIITDHDMTLKSVISDVFPSACHCICLWHILGKVSENLAPVIKKNENFMAKFEKCIYRSLTSDDFDNRWEKFLDRFELRQDECMQSLYEDRKLWAPTFMKDVFLGGMSTAQRSESVNSFFDKYVHRKTYVQDFVKQYETILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGICTHTVFKKIQAEIIGAVACHPKLDRQDETNIVHRVHDMEINRDFFVVVNEVKSEVSCICRLFEYKGYLCRHALVVLQYSGHSVFPSQYVLKRWTKDAKVRNVTGEESEHMLARVQRYNDLCHRSLKLSEEGSLSQDSYSIAFHALNEAHKSCVSVNNSSKSPTEAGTSGAHGQLSIEEDTQSRNMGKSNKKKNPTKKKKVNSEAEVMNVGALDNMQQMDKFSTRTAVTLEGYYGAQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPMSSIPTSHDGYYGAHQSMPGLAQLDFLRTGFAYNIRDEPNVRAPQLHEDPSRHA*