Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237140 | XP_013444755.1 | 96.377 | 138 | 3 | 1 | 1 | 136 | 1 | 138 | 1.78e-86 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237140 | sp|O82352|RTNLE_ARATH | 59.559 | 136 | 47 | 2 | 1 | 136 | 1 | 128 | 1.71e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237140 | I3S2R5 | 96.377 | 138 | 3 | 1 | 1 | 136 | 1 | 138 | 8.49e-87 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0693330 | Msa1237140 | 0.800818 | 1.205666e-48 | -8.615850e-47 |
| Msa0152870 | Msa1237140 | 0.801182 | 1.015852e-48 | -8.615850e-47 |
| Msa0209140 | Msa1237140 | 0.805189 | 1.505014e-49 | -8.615850e-47 |
| Msa0218830 | Msa1237140 | 0.813624 | 2.329745e-51 | -8.615850e-47 |
| Msa1237140 | Msa1262890 | 0.808097 | 3.661548e-50 | -8.615850e-47 |
| Msa1237140 | Msa1373170 | 0.800261 | 1.565894e-48 | -8.615850e-47 |
| Msa0435370 | Msa1237140 | 0.812384 | 4.356344e-51 | -8.615850e-47 |
| Msa0241830 | Msa1237140 | 0.805303 | 1.424843e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237140 | MtrunA17_Chr8g0348131 | 96.377 | 138 | 3 | 1 | 1 | 136 | 1 | 138 | 1.63e-90 | 263 |
| Msa1237140 | MtrunA17_Chr8g0387631 | 59.712 | 139 | 48 | 2 | 1 | 136 | 1 | 134 | 3.07e-44 | 145 |
| Msa1237140 | MtrunA17_Chr1g0202401 | 52.066 | 121 | 56 | 1 | 18 | 136 | 7 | 127 | 4.60e-39 | 132 |
| Msa1237140 | MtrunA17_Chr3g0095441 | 47.414 | 116 | 59 | 1 | 22 | 135 | 3 | 118 | 1.50e-28 | 104 |
| Msa1237140 | MtrunA17_Chr5g0442361 | 55.000 | 80 | 36 | 0 | 51 | 130 | 33 | 112 | 3.99e-22 | 87.8 |
| Msa1237140 | MtrunA17_Chr8g0376101 | 41.237 | 97 | 46 | 1 | 32 | 128 | 4 | 89 | 4.27e-21 | 84.7 |
| Msa1237140 | MtrunA17_Chr1g0209261 | 48.000 | 75 | 37 | 1 | 60 | 134 | 10 | 82 | 4.85e-20 | 81.6 |
| Msa1237140 | MtrunA17_Chr3g0108661 | 36.842 | 114 | 57 | 2 | 28 | 134 | 16 | 121 | 4.46e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237140 | AT2G46170.2 | 59.559 | 136 | 47 | 2 | 1 | 136 | 1 | 128 | 2.21e-49 | 156 |
| Msa1237140 | AT2G46170.1 | 59.559 | 136 | 47 | 2 | 1 | 136 | 1 | 128 | 1.74e-48 | 156 |
| Msa1237140 | AT3G61560.3 | 58.824 | 136 | 48 | 2 | 1 | 136 | 1 | 128 | 6.47e-43 | 140 |
| Msa1237140 | AT3G61560.1 | 58.824 | 136 | 48 | 2 | 1 | 136 | 1 | 128 | 2.18e-42 | 140 |
| Msa1237140 | AT3G61560.2 | 58.824 | 136 | 48 | 2 | 1 | 136 | 1 | 128 | 2.18e-42 | 140 |
| Msa1237140 | AT4G23630.1 | 72.500 | 80 | 22 | 0 | 57 | 136 | 70 | 149 | 2.13e-40 | 136 |
| Msa1237140 | AT4G23630.2 | 72.500 | 80 | 22 | 0 | 57 | 136 | 70 | 149 | 2.13e-40 | 136 |
| Msa1237140 | AT4G11220.1 | 53.103 | 145 | 59 | 2 | 1 | 136 | 1 | 145 | 3.04e-40 | 135 |
| Msa1237140 | AT1G64090.1 | 58.824 | 119 | 46 | 1 | 18 | 136 | 9 | 124 | 1.99e-39 | 133 |
| Msa1237140 | AT5G41600.1 | 58.400 | 125 | 51 | 1 | 13 | 136 | 4 | 128 | 1.81e-38 | 130 |
| Msa1237140 | AT1G64090.2 | 51.111 | 135 | 47 | 2 | 18 | 136 | 9 | 140 | 5.79e-34 | 119 |
| Msa1237140 | AT3G10260.1 | 53.488 | 86 | 40 | 0 | 51 | 136 | 36 | 121 | 3.99e-28 | 103 |
| Msa1237140 | AT3G10260.2 | 53.488 | 86 | 40 | 0 | 51 | 136 | 36 | 121 | 3.99e-28 | 103 |
| Msa1237140 | AT3G10260.3 | 53.488 | 86 | 40 | 0 | 51 | 136 | 56 | 141 | 6.76e-28 | 103 |
| Msa1237140 | AT3G18260.1 | 37.255 | 102 | 54 | 1 | 34 | 135 | 7 | 98 | 1.12e-19 | 81.6 |
| Msa1237140 | AT4G01230.2 | 51.899 | 79 | 38 | 0 | 52 | 130 | 46 | 124 | 4.98e-19 | 80.1 |
| Msa1237140 | AT4G01230.1 | 48.101 | 79 | 39 | 1 | 52 | 130 | 46 | 122 | 1.64e-14 | 68.2 |
| Msa1237140 | AT3G10915.1 | 33.654 | 104 | 65 | 2 | 33 | 136 | 2 | 101 | 2.43e-13 | 63.5 |
| Msa1237140 | AT3G10915.2 | 33.654 | 104 | 65 | 2 | 33 | 136 | 2 | 101 | 1.44e-12 | 62.8 |
| Msa1237140 | AT3G10915.4 | 33.654 | 104 | 65 | 2 | 33 | 136 | 2 | 101 | 1.47e-12 | 62.8 |
| Msa1237140 | AT3G10915.7 | 34.177 | 79 | 52 | 0 | 58 | 136 | 48 | 126 | 1.02e-11 | 60.8 |
| Msa1237140 | AT1G68230.2 | 48.276 | 58 | 30 | 0 | 71 | 128 | 26 | 83 | 4.60e-11 | 58.5 |
| Msa1237140 | AT1G68230.1 | 53.333 | 45 | 21 | 0 | 71 | 115 | 26 | 70 | 5.25e-11 | 57.4 |
Find 34 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTCACATTTCGATTC+TGG | 0.146999 | 8_2:-16396442 | Msa1237140:CDS |
| TCGGGACAGCAACTGCTATT+TGG | 0.157804 | 8_2:-16396503 | Msa1237140:CDS |
| TTCTGATTCTCATTCTGATT+TGG | 0.273750 | 8_2:-16397425 | Msa1237140:CDS |
| CGGGACAGCAACTGCTATTT+GGG | 0.323494 | 8_2:-16396502 | Msa1237140:CDS |
| CAGGCTTCTCCCTTCCAAAA+AGG | 0.354297 | 8_2:+16397359 | None:intergenic |
| TCCTTCACCGATTCAATAAC+CGG | 0.358423 | 8_2:+16397394 | None:intergenic |
| TACCGAGAAGCTTCACTTTG+AGG | 0.378815 | 8_2:-16397464 | Msa1237140:CDS |
| ATCCTCAAAGTGAAGCTTCT+CGG | 0.391651 | 8_2:+16397462 | None:intergenic |
| AGAGAGTGCAGTGTGGTTAG+AGG | 0.407806 | 8_2:+16397632 | None:intergenic |
| TTCTGATTTGGATAAGAAAC+CGG | 0.414962 | 8_2:-16397413 | Msa1237140:CDS |
| TCAACGAAACCCTAAATCTC+AGG | 0.422908 | 8_2:+16397561 | None:intergenic |
| GTTCACTCCGTCCTCGGCGG+CGG | 0.462690 | 8_2:-16397337 | Msa1237140:CDS |
| CCGCCGAGGACGGAGTGAAC+AGG | 0.464754 | 8_2:+16397340 | None:intergenic |
| TAAGAAACCGGTTATTGAAT+CGG | 0.485712 | 8_2:-16397401 | Msa1237140:CDS |
| AAGTTATCTGCTGGTACACT+CGG | 0.490344 | 8_2:-16396522 | Msa1237140:CDS |
| CAGCTGCTGATGTGTTCTTG+TGG | 0.506480 | 8_2:-16396554 | Msa1237140:CDS |
| ATCAGAATGAGAATCAGAAT+CGG | 0.525151 | 8_2:+16397429 | None:intergenic |
| GTGAACAAAGGCATGAGCAT+TGG | 0.527273 | 8_2:+16396395 | None:intergenic |
| ACGCTTTCCGCCGCCGAGGA+CGG | 0.537634 | 8_2:+16397330 | None:intergenic |
| TATTGAATCGGTGAAGGAGA+AGG | 0.548952 | 8_2:-16397389 | Msa1237140:CDS |
| AAGCCTGTTCACTCCGTCCT+CGG | 0.554597 | 8_2:-16397343 | Msa1237140:CDS |
| AAGAACAAGAAGTTATCTGC+TGG | 0.588642 | 8_2:-16396531 | Msa1237140:CDS |
| ACCGGTTATTGAATCGGTGA+AGG | 0.598940 | 8_2:-16397395 | Msa1237140:CDS |
| GCCGTCACGATCCACCGTCA+CGG | 0.610496 | 8_2:+16397510 | None:intergenic |
| AGAGAAAAGCACCGTGACGG+TGG | 0.618933 | 8_2:-16397521 | Msa1237140:CDS |
| ATCAGAGAAAAGCACCGTGA+CGG | 0.632245 | 8_2:-16397524 | Msa1237140:CDS |
| AGAGGCGAGAATCTCAGTGT+GGG | 0.638504 | 8_2:+16397650 | None:intergenic |
| AGTTATCTGCTGGTACACTC+GGG | 0.638812 | 8_2:-16396521 | Msa1237140:CDS |
| AGAGTCTTACTTGTGAACAA+AGG | 0.647132 | 8_2:+16396383 | None:intergenic |
| ACCGTGACGGTGGATCGTGA+CGG | 0.663353 | 8_2:-16397511 | Msa1237140:CDS |
| GTGACGGTGGATCGTGACGG+CGG | 0.663536 | 8_2:-16397508 | Msa1237140:CDS |
| TCATACGCTTTCCGCCGCCG+AGG | 0.684893 | 8_2:+16397326 | None:intergenic |
| TAGAGGCGAGAATCTCAGTG+TGG | 0.697917 | 8_2:+16397649 | None:intergenic |
| CCTGTTCACTCCGTCCTCGG+CGG | 0.706578 | 8_2:-16397340 | Msa1237140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATAGATATTTTTTTTTG+AGG | + | chr8_2:16397135-16397154 | None:intergenic | 15.0% |
| !! | AAAAAAATATCTATGAATCA+TGG | - | chr8_2:16397138-16397157 | Msa1237140:intron | 15.0% |
| !!! | TTCATAGATATTTTTTTTTG+AGG | + | chr8_2:16397135-16397154 | None:intergenic | 15.0% |
| !! | AAAAAAATATCTATGAATCA+TGG | - | chr8_2:16397138-16397157 | Msa1237140:intron | 15.0% |
| !! | AAGGAAAAAAAAATCTCTTT+CGG | + | chr8_2:16396455-16396474 | None:intergenic | 20.0% |
| !! | AAAAAAGGTTTGAAAATTGA+AGG | + | chr8_2:16396474-16396493 | None:intergenic | 20.0% |
| !!! | CTTTATTGTTTTAGTTGTTT+TGG | - | chr8_2:16396754-16396773 | Msa1237140:intron | 20.0% |
| !! | GACTAGGTAAAAAAAATAAT+TGG | + | chr8_2:16397164-16397183 | None:intergenic | 20.0% |
| !!! | AACAAGAAAAAATATTGACT+AGG | + | chr8_2:16397180-16397199 | None:intergenic | 20.0% |
| !! | TAAATTGTATCTACGAAATT+TGG | - | chr8_2:16397238-16397257 | Msa1237140:intron | 20.0% |
| !! | TTATGTAAGATGTAAAAACA+TGG | - | chr8_2:16397311-16397330 | Msa1237140:intron | 20.0% |
| !! | AAGGAAAAAAAAATCTCTTT+CGG | + | chr8_2:16396455-16396474 | None:intergenic | 20.0% |
| !! | AAAAAAGGTTTGAAAATTGA+AGG | + | chr8_2:16396474-16396493 | None:intergenic | 20.0% |
| !!! | CTTTATTGTTTTAGTTGTTT+TGG | - | chr8_2:16396754-16396773 | Msa1237140:intron | 20.0% |
| !! | GACTAGGTAAAAAAAATAAT+TGG | + | chr8_2:16397164-16397183 | None:intergenic | 20.0% |
| !!! | AACAAGAAAAAATATTGACT+AGG | + | chr8_2:16397180-16397199 | None:intergenic | 20.0% |
| !! | TAAATTGTATCTACGAAATT+TGG | - | chr8_2:16397238-16397257 | Msa1237140:intron | 20.0% |
| !! | TTATGTAAGATGTAAAAACA+TGG | - | chr8_2:16397311-16397330 | Msa1237140:intron | 20.0% |
| !! | AAAAAAATCTCTTTCGGTTT+TGG | + | chr8_2:16396449-16396468 | None:intergenic | 25.0% |
| ! | ATGTGAATGAAAATTGTGAT+TGG | - | chr8_2:16396835-16396854 | Msa1237140:intron | 25.0% |
| ! | TGTAAAAACATGGTAATTTG+TGG | - | chr8_2:16397321-16397340 | Msa1237140:intron | 25.0% |
| !!! | ATTCTGACTTTTTAGTGTTA+TGG | - | chr8_2:16397353-16397372 | Msa1237140:CDS | 25.0% |
| !!! | ATTTGGTTCTCTGTTTTTAT+TGG | - | chr8_2:16397384-16397403 | Msa1237140:CDS | 25.0% |
| !! | AATTTCATCTCTTCTTTTAG+AGG | + | chr8_2:16397430-16397449 | None:intergenic | 25.0% |
| !! | AAAAAAATCTCTTTCGGTTT+TGG | + | chr8_2:16396449-16396468 | None:intergenic | 25.0% |
| ! | ATGTGAATGAAAATTGTGAT+TGG | - | chr8_2:16396835-16396854 | Msa1237140:intron | 25.0% |
| ! | TGTAAAAACATGGTAATTTG+TGG | - | chr8_2:16397321-16397340 | Msa1237140:intron | 25.0% |
| !!! | ATTCTGACTTTTTAGTGTTA+TGG | - | chr8_2:16397353-16397372 | Msa1237140:CDS | 25.0% |
| !!! | ATTTGGTTCTCTGTTTTTAT+TGG | - | chr8_2:16397384-16397403 | Msa1237140:CDS | 25.0% |
| !! | AATTTCATCTCTTCTTTTAG+AGG | + | chr8_2:16397430-16397449 | None:intergenic | 25.0% |
| !!! | AACCTTTTTTCCTGAGATTT+AGG | - | chr8_2:16396484-16396503 | Msa1237140:CDS | 30.0% |
| !!! | ACCTTTTTTCCTGAGATTTA+GGG | - | chr8_2:16396485-16396504 | Msa1237140:CDS | 30.0% |
| ! | TTTAGGGTTTCGTTGAAAAA+TGG | - | chr8_2:16396501-16396520 | Msa1237140:CDS | 30.0% |
| ATCAGAATGAGAATCAGAAT+CGG | + | chr8_2:16396629-16396648 | None:intergenic | 30.0% | |
| TTCTGATTCTCATTCTGATT+TGG | - | chr8_2:16396630-16396649 | Msa1237140:intron | 30.0% | |
| !! | TTCTGATTTGGATAAGAAAC+CGG | - | chr8_2:16396642-16396661 | Msa1237140:intron | 30.0% |
| TAAGAAACCGGTTATTGAAT+CGG | - | chr8_2:16396654-16396673 | Msa1237140:intron | 30.0% | |
| ATTATTGCGTATTTGTCTGA+TGG | - | chr8_2:16397464-16397483 | Msa1237140:CDS | 30.0% | |
| TTATTGCGTATTTGTCTGAT+GGG | - | chr8_2:16397465-16397484 | Msa1237140:CDS | 30.0% | |
| !!! | TTCTTGCACTATTGTTTTTG+TGG | - | chr8_2:16397636-16397655 | Msa1237140:five_prime_UTR | 30.0% |
| !!! | AACCTTTTTTCCTGAGATTT+AGG | - | chr8_2:16396484-16396503 | Msa1237140:CDS | 30.0% |
| !!! | ACCTTTTTTCCTGAGATTTA+GGG | - | chr8_2:16396485-16396504 | Msa1237140:CDS | 30.0% |
| ! | TTTAGGGTTTCGTTGAAAAA+TGG | - | chr8_2:16396501-16396520 | Msa1237140:CDS | 30.0% |
| ATCAGAATGAGAATCAGAAT+CGG | + | chr8_2:16396629-16396648 | None:intergenic | 30.0% | |
| TTCTGATTCTCATTCTGATT+TGG | - | chr8_2:16396630-16396649 | Msa1237140:intron | 30.0% | |
| !! | TTCTGATTTGGATAAGAAAC+CGG | - | chr8_2:16396642-16396661 | Msa1237140:intron | 30.0% |
| TAAGAAACCGGTTATTGAAT+CGG | - | chr8_2:16396654-16396673 | Msa1237140:intron | 30.0% | |
| ATTATTGCGTATTTGTCTGA+TGG | - | chr8_2:16397464-16397483 | Msa1237140:CDS | 30.0% | |
| TTATTGCGTATTTGTCTGAT+GGG | - | chr8_2:16397465-16397484 | Msa1237140:CDS | 30.0% | |
| !!! | TTCTTGCACTATTGTTTTTG+TGG | - | chr8_2:16397636-16397655 | Msa1237140:five_prime_UTR | 30.0% |
| ACCCTAAATCTCAGGAAAAA+AGG | + | chr8_2:16396489-16396508 | None:intergenic | 35.0% | |
| ! | CTTTACCTCTGACCTAATTT+TGG | - | chr8_2:16397099-16397118 | Msa1237140:intron | 35.0% |
| GTAATCCAAAATTAGGTCAG+AGG | + | chr8_2:16397107-16397126 | None:intergenic | 35.0% | |
| GGCACTAGTAATCCAAAATT+AGG | + | chr8_2:16397114-16397133 | None:intergenic | 35.0% | |
| !! | GTGTTATGGTTTTGCTGATT+TGG | - | chr8_2:16397367-16397386 | Msa1237140:CDS | 35.0% |
| AAGAACAAGAAGTTATCTGC+TGG | - | chr8_2:16397524-16397543 | Msa1237140:CDS | 35.0% | |
| CATTTGTCACATTTCGATTC+TGG | - | chr8_2:16397613-16397632 | Msa1237140:five_prime_UTR | 35.0% | |
| ACCCTAAATCTCAGGAAAAA+AGG | + | chr8_2:16396489-16396508 | None:intergenic | 35.0% | |
| ! | CTTTACCTCTGACCTAATTT+TGG | - | chr8_2:16397099-16397118 | Msa1237140:intron | 35.0% |
| GTAATCCAAAATTAGGTCAG+AGG | + | chr8_2:16397107-16397126 | None:intergenic | 35.0% | |
| GGCACTAGTAATCCAAAATT+AGG | + | chr8_2:16397114-16397133 | None:intergenic | 35.0% | |
| !! | GTGTTATGGTTTTGCTGATT+TGG | - | chr8_2:16397367-16397386 | Msa1237140:CDS | 35.0% |
| AAGAACAAGAAGTTATCTGC+TGG | - | chr8_2:16397524-16397543 | Msa1237140:CDS | 35.0% | |
| CATTTGTCACATTTCGATTC+TGG | - | chr8_2:16397613-16397632 | Msa1237140:five_prime_UTR | 35.0% | |
| TCAACGAAACCCTAAATCTC+AGG | + | chr8_2:16396497-16396516 | None:intergenic | 40.0% | |
| ATCCTCAAAGTGAAGCTTCT+CGG | + | chr8_2:16396596-16396615 | None:intergenic | 40.0% | |
| !! | TCCTTCACCGATTCAATAAC+CGG | + | chr8_2:16396664-16396683 | None:intergenic | 40.0% |
| TATTGAATCGGTGAAGGAGA+AGG | - | chr8_2:16396666-16396685 | Msa1237140:intron | 40.0% | |
| ! | GAGAAGGTTTTTCGCCTTTT+TGG | - | chr8_2:16396682-16396701 | Msa1237140:intron | 40.0% |
| ! | AGGTTTTTCGCCTTTTTGGA+AGG | - | chr8_2:16396686-16396705 | Msa1237140:intron | 40.0% |
| !! | GGTTTTTCGCCTTTTTGGAA+GGG | - | chr8_2:16396687-16396706 | Msa1237140:intron | 40.0% |
| GCTCTTAATGACTTTGCCAA+AGG | - | chr8_2:16397020-16397039 | Msa1237140:intron | 40.0% | |
| TTGCCAAAGGACGAATTGTT+TGG | - | chr8_2:16397033-16397052 | Msa1237140:intron | 40.0% | |
| TGCCAAAGGACGAATTGTTT+GGG | - | chr8_2:16397034-16397053 | Msa1237140:intron | 40.0% | |
| TACCCAAACAATTCGTCCTT+TGG | + | chr8_2:16397039-16397058 | None:intergenic | 40.0% | |
| TTCTACACACAAATCGCACT+CGG | + | chr8_2:16397064-16397083 | None:intergenic | 40.0% | |
| AAGTTATCTGCTGGTACACT+CGG | - | chr8_2:16397533-16397552 | Msa1237140:CDS | 40.0% | |
| TCAACGAAACCCTAAATCTC+AGG | + | chr8_2:16396497-16396516 | None:intergenic | 40.0% | |
| ATCCTCAAAGTGAAGCTTCT+CGG | + | chr8_2:16396596-16396615 | None:intergenic | 40.0% | |
| !! | TCCTTCACCGATTCAATAAC+CGG | + | chr8_2:16396664-16396683 | None:intergenic | 40.0% |
| TATTGAATCGGTGAAGGAGA+AGG | - | chr8_2:16396666-16396685 | Msa1237140:intron | 40.0% | |
| ! | GAGAAGGTTTTTCGCCTTTT+TGG | - | chr8_2:16396682-16396701 | Msa1237140:intron | 40.0% |
| ! | AGGTTTTTCGCCTTTTTGGA+AGG | - | chr8_2:16396686-16396705 | Msa1237140:intron | 40.0% |
| !! | GGTTTTTCGCCTTTTTGGAA+GGG | - | chr8_2:16396687-16396706 | Msa1237140:intron | 40.0% |
| GCTCTTAATGACTTTGCCAA+AGG | - | chr8_2:16397020-16397039 | Msa1237140:intron | 40.0% | |
| TTGCCAAAGGACGAATTGTT+TGG | - | chr8_2:16397033-16397052 | Msa1237140:intron | 40.0% | |
| TGCCAAAGGACGAATTGTTT+GGG | - | chr8_2:16397034-16397053 | Msa1237140:intron | 40.0% | |
| TACCCAAACAATTCGTCCTT+TGG | + | chr8_2:16397039-16397058 | None:intergenic | 40.0% | |
| TTCTACACACAAATCGCACT+CGG | + | chr8_2:16397064-16397083 | None:intergenic | 40.0% | |
| AAGTTATCTGCTGGTACACT+CGG | - | chr8_2:16397533-16397552 | Msa1237140:CDS | 40.0% | |
| !! | ATCAGAGAAAAGCACCGTGA+CGG | - | chr8_2:16396531-16396550 | Msa1237140:CDS | 45.0% |
| TACCGAGAAGCTTCACTTTG+AGG | - | chr8_2:16396591-16396610 | Msa1237140:intron | 45.0% | |
| ACCGGTTATTGAATCGGTGA+AGG | - | chr8_2:16396660-16396679 | Msa1237140:intron | 45.0% | |
| AGTTATCTGCTGGTACACTC+GGG | - | chr8_2:16397534-16397553 | Msa1237140:CDS | 45.0% | |
| ! | GTGAACAAAGGCATGAGCAT+TGG | + | chr8_2:16397663-16397682 | None:intergenic | 45.0% |
| !! | ATCAGAGAAAAGCACCGTGA+CGG | - | chr8_2:16396531-16396550 | Msa1237140:CDS | 45.0% |
| TACCGAGAAGCTTCACTTTG+AGG | - | chr8_2:16396591-16396610 | Msa1237140:intron | 45.0% | |
| ACCGGTTATTGAATCGGTGA+AGG | - | chr8_2:16396660-16396679 | Msa1237140:intron | 45.0% | |
| AGTTATCTGCTGGTACACTC+GGG | - | chr8_2:16397534-16397553 | Msa1237140:CDS | 45.0% | |
| ! | GTGAACAAAGGCATGAGCAT+TGG | + | chr8_2:16397663-16397682 | None:intergenic | 45.0% |
| AGAGGCGAGAATCTCAGTGT+GGG | + | chr8_2:16396408-16396427 | None:intergenic | 50.0% | |
| TAGAGGCGAGAATCTCAGTG+TGG | + | chr8_2:16396409-16396428 | None:intergenic | 50.0% | |
| ! | AGAGAGTGCAGTGTGGTTAG+AGG | + | chr8_2:16396426-16396445 | None:intergenic | 50.0% |
| !!! | GTTTTGGAGAGAGTGCAGTG+TGG | + | chr8_2:16396433-16396452 | None:intergenic | 50.0% |
| CAGGCTTCTCCCTTCCAAAA+AGG | + | chr8_2:16396699-16396718 | None:intergenic | 50.0% | |
| CAGCTGCTGATGTGTTCTTG+TGG | - | chr8_2:16397501-16397520 | Msa1237140:CDS | 50.0% | |
| TCGGGACAGCAACTGCTATT+TGG | - | chr8_2:16397552-16397571 | Msa1237140:exon | 50.0% | |
| ! | CGGGACAGCAACTGCTATTT+GGG | - | chr8_2:16397553-16397572 | Msa1237140:exon | 50.0% |
| AGAGGCGAGAATCTCAGTGT+GGG | + | chr8_2:16396408-16396427 | None:intergenic | 50.0% | |
| TAGAGGCGAGAATCTCAGTG+TGG | + | chr8_2:16396409-16396428 | None:intergenic | 50.0% | |
| ! | AGAGAGTGCAGTGTGGTTAG+AGG | + | chr8_2:16396426-16396445 | None:intergenic | 50.0% |
| !!! | GTTTTGGAGAGAGTGCAGTG+TGG | + | chr8_2:16396433-16396452 | None:intergenic | 50.0% |
| CAGGCTTCTCCCTTCCAAAA+AGG | + | chr8_2:16396699-16396718 | None:intergenic | 50.0% | |
| CAGCTGCTGATGTGTTCTTG+TGG | - | chr8_2:16397501-16397520 | Msa1237140:CDS | 50.0% | |
| TCGGGACAGCAACTGCTATT+TGG | - | chr8_2:16397552-16397571 | Msa1237140:exon | 50.0% | |
| ! | CGGGACAGCAACTGCTATTT+GGG | - | chr8_2:16397553-16397572 | Msa1237140:exon | 50.0% |
| !! | AGAGAAAAGCACCGTGACGG+TGG | - | chr8_2:16396534-16396553 | Msa1237140:CDS | 55.0% |
| AAGCCTGTTCACTCCGTCCT+CGG | - | chr8_2:16396712-16396731 | Msa1237140:intron | 55.0% | |
| !! | AGAGAAAAGCACCGTGACGG+TGG | - | chr8_2:16396534-16396553 | Msa1237140:CDS | 55.0% |
| AAGCCTGTTCACTCCGTCCT+CGG | - | chr8_2:16396712-16396731 | Msa1237140:intron | 55.0% | |
| ACCGTGACGGTGGATCGTGA+CGG | - | chr8_2:16396544-16396563 | Msa1237140:CDS | 60.0% | |
| ACCGTGACGGTGGATCGTGA+CGG | - | chr8_2:16396544-16396563 | Msa1237140:CDS | 60.0% | |
| GCCGTCACGATCCACCGTCA+CGG | + | chr8_2:16396548-16396567 | None:intergenic | 65.0% | |
| GTGACGGTGGATCGTGACGG+CGG | - | chr8_2:16396547-16396566 | Msa1237140:CDS | 65.0% | |
| CCTGTTCACTCCGTCCTCGG+CGG | - | chr8_2:16396715-16396734 | Msa1237140:intron | 65.0% | |
| TCATACGCTTTCCGCCGCCG+AGG | + | chr8_2:16396732-16396751 | None:intergenic | 65.0% | |
| GCCGTCACGATCCACCGTCA+CGG | + | chr8_2:16396548-16396567 | None:intergenic | 65.0% | |
| GTGACGGTGGATCGTGACGG+CGG | - | chr8_2:16396547-16396566 | Msa1237140:CDS | 65.0% | |
| CCTGTTCACTCCGTCCTCGG+CGG | - | chr8_2:16396715-16396734 | Msa1237140:intron | 65.0% | |
| TCATACGCTTTCCGCCGCCG+AGG | + | chr8_2:16396732-16396751 | None:intergenic | 65.0% | |
| CCGCCGAGGACGGAGTGAAC+AGG | + | chr8_2:16396718-16396737 | None:intergenic | 70.0% | |
| GTTCACTCCGTCCTCGGCGG+CGG | - | chr8_2:16396718-16396737 | Msa1237140:intron | 70.0% | |
| ACGCTTTCCGCCGCCGAGGA+CGG | + | chr8_2:16396728-16396747 | None:intergenic | 70.0% | |
| CCGCCGAGGACGGAGTGAAC+AGG | + | chr8_2:16396718-16396737 | None:intergenic | 70.0% | |
| GTTCACTCCGTCCTCGGCGG+CGG | - | chr8_2:16396718-16396737 | Msa1237140:intron | 70.0% | |
| ACGCTTTCCGCCGCCGAGGA+CGG | + | chr8_2:16396728-16396747 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 16396389 | 16397688 | 16396389 | ID=Msa1237140;Name=Msa1237140 |
| chr8_2 | mRNA | 16396389 | 16397688 | 16396389 | ID=Msa1237140-mRNA-1;Parent=Msa1237140;Name=Msa1237140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=131|1|0.5|1|1|1|2|0|136 |
| chr8_2 | exon | 16396389 | 16396573 | 16396389 | ID=Msa1237140-mRNA-1:exon:6181;Parent=Msa1237140-mRNA-1 |
| chr8_2 | exon | 16397332 | 16397688 | 16397332 | ID=Msa1237140-mRNA-1:exon:6180;Parent=Msa1237140-mRNA-1 |
| chr8_2 | five_prime_UTR | 16397558 | 16397688 | 16397558 | ID=Msa1237140-mRNA-1:five_prime_utr;Parent=Msa1237140-mRNA-1 |
| chr8_2 | CDS | 16397332 | 16397557 | 16397332 | ID=Msa1237140-mRNA-1:cds;Parent=Msa1237140-mRNA-1 |
| chr8_2 | CDS | 16396389 | 16396573 | 16396389 | ID=Msa1237140-mRNA-1:cds;Parent=Msa1237140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
