AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693330 MtrunA17_Chr4g0043711 97.419 155 4 0 1 155 1 155 4.57e-112 314
Msa0693330 MtrunA17_Chr5g0400431 67.164 134 44 0 22 155 33 166 4.35e-67 201
Msa0693330 MtrunA17_Chr7g0260591 77.358 53 10 1 53 103 3 55 5.37e-20 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693330 AT2G35120.1 78.205 156 33 1 1 155 1 156 6.11e-88 254
Msa0693330 AT1G32470.1 58.683 167 56 2 1 155 1 166 1.57e-63 192
Msa0693330 AT2G35370.1 66.176 136 46 0 20 155 30 165 3.73e-63 191

Find 53 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATCAACTCTCCTGTTTC+AGG 0.209182 4_4:+62234289 Msa0693330:CDS
AGAAGTTCTGTGAATTTAAT+AGG 0.229777 4_4:+62234903 Msa0693330:three_prime_UTR
TTCACTGCCGTTCCCACTTC+TGG 0.241034 4_4:-62234220 None:intergenic
AACTCAAGCCCCTATGAAAA+TGG 0.268193 4_4:+62234481 Msa0693330:CDS
CATTATGCAACTCATTTACT+AGG 0.304616 4_4:-62235029 None:intergenic
AGATGGCTTGCAGGCAGTTA+TGG 0.326829 4_4:+62232803 Msa0693330:exon
TGATCACGCCCAAGATCATT+TGG 0.350191 4_4:+62234174 Msa0693330:CDS
TGGTATAGATGATGTCAATT+TGG 0.362666 4_4:+62234639 Msa0693330:three_prime_UTR
GTGAAACAAGGAGATGGTTT+TGG 0.366878 4_4:+62234238 Msa0693330:CDS
ATCTTCTTCTTCACAGAACT+TGG 0.368009 4_4:-62234572 None:intergenic
CAACATCACCCAAATGATCT+TGG 0.387609 4_4:-62234183 None:intergenic
GATGGCTTGCAGGCAGTTAT+GGG 0.405390 4_4:+62232804 Msa0693330:exon
TGGCGAACTTGACAAATTGA+TGG 0.434808 4_4:+62234534 Msa0693330:CDS
GCTCAGCAACTCTCCTGCTT+TGG 0.435121 4_4:+62234336 Msa0693330:CDS
CCTGAGGTATGATGCGGCTC+TGG 0.441316 4_4:-62232830 Msa0693320:intron
ATTCATTCATTCAGTGTAAG+TGG 0.444370 4_4:+62232749 Msa0693330:five_prime_UTR
TGAATGTCGTATGACAAAAC+TGG 0.478972 4_4:-62234842 None:intergenic
TGGGAAGTACTGAAAGATAT+CGG 0.488163 4_4:-62234615 None:intergenic
GCAATAAAACTCACCAAAGC+AGG 0.490891 4_4:-62234349 None:intergenic
CATGAATGGGTGAAAGTTGA+CGG 0.492157 4_4:+62234127 Msa0693330:CDS
AACATCACCCAAATGATCTT+GGG 0.497491 4_4:-62234182 None:intergenic
GATCACGCCCAAGATCATTT+GGG 0.506582 4_4:+62234175 Msa0693330:CDS
CCAGAGCCGCATCATACCTC+AGG 0.521213 4_4:+62232830 Msa0693330:CDS
ATTATGCAACTCATTTACTA+GGG 0.521966 4_4:-62235028 None:intergenic
AGTATGCTGATTCTCATGAA+TGG 0.523325 4_4:+62234113 Msa0693330:CDS
TTGACATCATCTATACCAAT+GGG 0.535199 4_4:-62234634 None:intergenic
CAAGCCCCTATGAAAATGGA+TGG 0.537218 4_4:+62234485 Msa0693330:CDS
GTGCTAGCTTCTGATGCAGA+GGG 0.540042 4_4:+62234721 Msa0693330:three_prime_UTR
TATCTTTCAGTACTTCCCAT+TGG 0.548271 4_4:+62234619 Msa0693330:three_prime_UTR
TTCCATCTTAGTTGAAAACA+AGG 0.549310 4_4:-62234879 None:intergenic
TGTGCTAGCTTCTGATGCAG+AGG 0.550877 4_4:+62234720 Msa0693330:three_prime_UTR
GTATGCTGATTCTCATGAAT+GGG 0.551627 4_4:+62234114 Msa0693330:CDS
ATTGACATCATCTATACCAA+TGG 0.555452 4_4:-62234635 None:intergenic
GACGGAAAATCTGCAACCAT+TGG 0.558598 4_4:+62234145 Msa0693330:CDS
TCGGCAAGACTATCAATGAC+TGG 0.570070 4_4:-62234596 None:intergenic
ATTGCTGTGGTTGGTGACAA+AGG 0.572500 4_4:-62232705 Msa0693320:intron
TTTCACAGAACCTTCTCTAA+CGG 0.580128 4_4:+62232862 Msa0693330:CDS
TTGCTGTGGTTGGTGACAAA+GGG 0.582432 4_4:-62232704 Msa0693320:intron
TCCATCTTAGTTGAAAACAA+GGG 0.618905 4_4:-62234878 None:intergenic
TGAATGAATACCGTTAGAGA+AGG 0.619094 4_4:-62232872 Msa0693320:CDS
TGGTGCAGTTGAAAGTGTGA+AGG 0.619953 4_4:+62234258 Msa0693330:CDS
TGAATTGCCAGAAGTGGGAA+CGG 0.630383 4_4:+62234213 Msa0693330:CDS
GGCGTGATCAGTTATGCCAA+TGG 0.630943 4_4:-62234161 None:intergenic
GTGGGAACGGCAGTGAAACA+AGG 0.631106 4_4:+62234226 Msa0693330:CDS
ACGGCAGTGAAACAAGGAGA+TGG 0.634473 4_4:+62234232 Msa0693330:CDS
CATTCATTCAGTGTAAGTGG+TGG 0.640220 4_4:+62232752 Msa0693330:five_prime_UTR
GTATGTTGAATTGCCAGAAG+TGG 0.646780 4_4:+62234207 Msa0693330:CDS
TGTGAAAGACAGAGATCCTG+AGG 0.655630 4_4:-62232846 Msa0693320:intron
TATGTTGAATTGCCAGAAGT+GGG 0.663199 4_4:+62234208 Msa0693330:CDS
TTATGCAACTCATTTACTAG+GGG 0.667229 4_4:-62235027 None:intergenic
AGAGATCCTGAGGTATGATG+CGG 0.690860 4_4:-62232836 Msa0693320:intron
AAAGTTGAGATGAGTGACAG+TGG 0.702478 4_4:+62234514 Msa0693330:CDS
TATGCAACTCATTTACTAGG+GGG 0.710912 4_4:-62235026 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAATAATAAAATTAACA+CGG - chr4_4:62232936-62232955 None:intergenic 10.0%
!! AAAAAAAAAATAAAAATTGG+AGG - chr4_4:62233108-62233127 None:intergenic 10.0%
!! ATAAAAGTTAATTATGAATA+AGG - chr4_4:62234374-62234393 None:intergenic 10.0%
!! ATGAAATAATAAAATTAACA+CGG - chr4_4:62232936-62232955 None:intergenic 10.0%
!! AAAAAAAAAATAAAAATTGG+AGG - chr4_4:62233108-62233127 None:intergenic 10.0%
!! ATAAAAGTTAATTATGAATA+AGG - chr4_4:62234374-62234393 None:intergenic 10.0%
!! TAATAATAAAATAAAAAGCG+AGG - chr4_4:62233019-62233038 None:intergenic 15.0%
!! TGTTAACAAAAAAAACAAAA+CGG - chr4_4:62233251-62233270 None:intergenic 15.0%
!!! TTTTTTTTCTAACTATTATC+TGG + chr4_4:62233689-62233708 Msa0693330:intron 15.0%
!!! AACCAAAATTTATATTTTGT+AGG + chr4_4:62233805-62233824 Msa0693330:intron 15.0%
!!! ATCCTACAAAATATAAATTT+TGG - chr4_4:62233810-62233829 None:intergenic 15.0%
!!! AAAATTTATATTTTGTAGGA+TGG + chr4_4:62233809-62233828 Msa0693330:intron 15.0%
!! TTAAAATTCAATATGCAAAT+TGG - chr4_4:62233855-62233874 None:intergenic 15.0%
!!! TTTTAATATCTTGAAAGTTT+TGG + chr4_4:62233869-62233888 Msa0693330:intron 15.0%
!! TAATAATAAAATAAAAAGCG+AGG - chr4_4:62233019-62233038 None:intergenic 15.0%
!! TGTTAACAAAAAAAACAAAA+CGG - chr4_4:62233251-62233270 None:intergenic 15.0%
!!! TTTTTTTTCTAACTATTATC+TGG + chr4_4:62233689-62233708 Msa0693330:intron 15.0%
!!! AACCAAAATTTATATTTTGT+AGG + chr4_4:62233805-62233824 Msa0693330:intron 15.0%
!!! ATCCTACAAAATATAAATTT+TGG - chr4_4:62233810-62233829 None:intergenic 15.0%
!!! AAAATTTATATTTTGTAGGA+TGG + chr4_4:62233809-62233828 Msa0693330:intron 15.0%
!! TTAAAATTCAATATGCAAAT+TGG - chr4_4:62233855-62233874 None:intergenic 15.0%
!!! TTTTAATATCTTGAAAGTTT+TGG + chr4_4:62233869-62233888 Msa0693330:intron 15.0%
!! ATATGTAAGTAACATATACT+AGG + chr4_4:62233271-62233290 Msa0693330:intron 20.0%
!! AAAAATGTAACAAACAACAT+AGG - chr4_4:62233350-62233369 None:intergenic 20.0%
!! AGATTTGATTGAGATATTAA+CGG - chr4_4:62233656-62233675 None:intergenic 20.0%
!! AAAGAAGAAAAAAACTAGTA+GGG - chr4_4:62234969-62234988 None:intergenic 20.0%
!! AAAAGAAGAAAAAAACTAGT+AGG - chr4_4:62234970-62234989 None:intergenic 20.0%
!! ATATGTAAGTAACATATACT+AGG + chr4_4:62233271-62233290 Msa0693330:intron 20.0%
!! AAAAATGTAACAAACAACAT+AGG - chr4_4:62233350-62233369 None:intergenic 20.0%
!! AGATTTGATTGAGATATTAA+CGG - chr4_4:62233656-62233675 None:intergenic 20.0%
!! AAAGAAGAAAAAAACTAGTA+GGG - chr4_4:62234969-62234988 None:intergenic 20.0%
!! AAAAGAAGAAAAAAACTAGT+AGG - chr4_4:62234970-62234989 None:intergenic 20.0%
! AACCACAGCAATATAAAAAA+GGG + chr4_4:62232716-62232735 Msa0693330:five_prime_UTR 25.0%
! TTGCCTTTATATACGTTAAT+CGG + chr4_4:62233049-62233068 Msa0693330:intron 25.0%
!! TTTTAGTGAATAGTGACAAA+AGG + chr4_4:62233219-62233238 Msa0693330:intron 25.0%
!! AGAATATTCCATTTCCATTT+TGG - chr4_4:62233304-62233323 None:intergenic 25.0%
!! TTCACCTTTAAAAGCAAAAA+CGG - chr4_4:62233473-62233492 None:intergenic 25.0%
!! ATAACAAACTGTTGTTTGTT+TGG + chr4_4:62233532-62233551 Msa0693330:intron 25.0%
! ATAACTCAGTCAAAAGAAAT+TGG - chr4_4:62233580-62233599 None:intergenic 25.0%
! TGAGATATTAACGGTTTATT+TGG - chr4_4:62233647-62233666 None:intergenic 25.0%
! TATTATCTGGTACATCATAT+TGG + chr4_4:62233702-62233721 Msa0693330:intron 25.0%
! TTAAAACTTAAAGTGAACGA+TGG + chr4_4:62233736-62233755 Msa0693330:intron 25.0%
! TAAAACTTAAAGTGAACGAT+GGG + chr4_4:62233737-62233756 Msa0693330:intron 25.0%
! CTTACAAATGAACAATGATA+TGG - chr4_4:62233768-62233787 None:intergenic 25.0%
! TAGGAAAACATAAAAACACT+TGG - chr4_4:62234443-62234462 None:intergenic 25.0%
!! ATTATCCATCCATTTTCATA+GGG - chr4_4:62234493-62234512 None:intergenic 25.0%
!! AATTATCCATCCATTTTCAT+AGG - chr4_4:62234494-62234513 None:intergenic 25.0%
!! AAAAATGAGATTGATAACCT+GGG + chr4_4:62234769-62234788 Msa0693330:three_prime_UTR 25.0%
!! TTTTTATTATCAAACTTCCC+AGG - chr4_4:62234789-62234808 None:intergenic 25.0%
! AGAAGTTCTGTGAATTTAAT+AGG + chr4_4:62234903-62234922 Msa0693330:three_prime_UTR 25.0%
! ATTATGCAACTCATTTACTA+GGG - chr4_4:62235031-62235050 None:intergenic 25.0%
! AACCACAGCAATATAAAAAA+GGG + chr4_4:62232716-62232735 Msa0693330:five_prime_UTR 25.0%
! TTGCCTTTATATACGTTAAT+CGG + chr4_4:62233049-62233068 Msa0693330:intron 25.0%
!! TTTTAGTGAATAGTGACAAA+AGG + chr4_4:62233219-62233238 Msa0693330:intron 25.0%
!! AGAATATTCCATTTCCATTT+TGG - chr4_4:62233304-62233323 None:intergenic 25.0%
!! TTCACCTTTAAAAGCAAAAA+CGG - chr4_4:62233473-62233492 None:intergenic 25.0%
!! ATAACAAACTGTTGTTTGTT+TGG + chr4_4:62233532-62233551 Msa0693330:intron 25.0%
! ATAACTCAGTCAAAAGAAAT+TGG - chr4_4:62233580-62233599 None:intergenic 25.0%
! TGAGATATTAACGGTTTATT+TGG - chr4_4:62233647-62233666 None:intergenic 25.0%
! TATTATCTGGTACATCATAT+TGG + chr4_4:62233702-62233721 Msa0693330:intron 25.0%
! TTAAAACTTAAAGTGAACGA+TGG + chr4_4:62233736-62233755 Msa0693330:intron 25.0%
! TAAAACTTAAAGTGAACGAT+GGG + chr4_4:62233737-62233756 Msa0693330:intron 25.0%
! CTTACAAATGAACAATGATA+TGG - chr4_4:62233768-62233787 None:intergenic 25.0%
! TAGGAAAACATAAAAACACT+TGG - chr4_4:62234443-62234462 None:intergenic 25.0%
!! ATTATCCATCCATTTTCATA+GGG - chr4_4:62234493-62234512 None:intergenic 25.0%
!! AATTATCCATCCATTTTCAT+AGG - chr4_4:62234494-62234513 None:intergenic 25.0%
!! AAAAATGAGATTGATAACCT+GGG + chr4_4:62234769-62234788 Msa0693330:three_prime_UTR 25.0%
!! TTTTTATTATCAAACTTCCC+AGG - chr4_4:62234789-62234808 None:intergenic 25.0%
! AGAAGTTCTGTGAATTTAAT+AGG + chr4_4:62234903-62234922 Msa0693330:three_prime_UTR 25.0%
! ATTATGCAACTCATTTACTA+GGG - chr4_4:62235031-62235050 None:intergenic 25.0%
!!! CTTTTTTATATTGCTGTGGT+TGG - chr4_4:62232717-62232736 Msa0693320:intron 30.0%
CAACCACAGCAATATAAAAA+AGG + chr4_4:62232715-62232734 Msa0693330:five_prime_UTR 30.0%
ATTCATTCATTCAGTGTAAG+TGG + chr4_4:62232749-62232768 Msa0693330:five_prime_UTR 30.0%
AGGATCACAAGAAGTAAAAA+TGG - chr4_4:62232999-62233018 None:intergenic 30.0%
CTTTATATACGTTAATCGGA+GGG + chr4_4:62233053-62233072 Msa0693330:intron 30.0%
AATTGAAAGAATAGATCGTC+CGG - chr4_4:62233201-62233220 None:intergenic 30.0%
TACTAGGCTAAATTCCAAAA+TGG + chr4_4:62233287-62233306 Msa0693330:intron 30.0%
GCTAAATTCCAAAATGGAAA+TGG + chr4_4:62233293-62233312 Msa0693330:intron 30.0%
GTGCATAATTCGAAATTAAG+TGG + chr4_4:62233425-62233444 Msa0693330:intron 30.0%
!! AAGTCCGTTTTTGCTTTTAA+AGG + chr4_4:62233466-62233485 Msa0693330:intron 30.0%
!! AATTTAGCTTGTTAGCACTT+TGG + chr4_4:62233503-62233522 Msa0693330:intron 30.0%
!! ATTTAGCTTGTTAGCACTTT+GGG + chr4_4:62233504-62233523 Msa0693330:intron 30.0%
! TAACGGTTTATTTGGTTTCA+AGG - chr4_4:62233639-62233658 None:intergenic 30.0%
! CAATATGCTACTTGTTCAAT+TGG - chr4_4:62233982-62234001 None:intergenic 30.0%
CAATTGAACAAGTAGCATAT+TGG + chr4_4:62233980-62233999 Msa0693330:intron 30.0%
CATACAAACTTGCAAAATGT+TGG - chr4_4:62234049-62234068 None:intergenic 30.0%
!! TTTCCTATTTTTCTTCGTGT+AGG + chr4_4:62234456-62234475 Msa0693330:intron 30.0%
! TTATCCATCCATTTTCATAG+GGG - chr4_4:62234492-62234511 None:intergenic 30.0%
TTGACATCATCTATACCAAT+GGG - chr4_4:62234637-62234656 None:intergenic 30.0%
ATTGACATCATCTATACCAA+TGG - chr4_4:62234638-62234657 None:intergenic 30.0%
TGGTATAGATGATGTCAATT+TGG + chr4_4:62234639-62234658 Msa0693330:three_prime_UTR 30.0%
! GAAAAATGAGATTGATAACC+TGG + chr4_4:62234768-62234787 Msa0693330:three_prime_UTR 30.0%
TCCATCTTAGTTGAAAACAA+GGG - chr4_4:62234881-62234900 None:intergenic 30.0%
TTCCATCTTAGTTGAAAACA+AGG - chr4_4:62234882-62234901 None:intergenic 30.0%
!! AAAAACTAGTAGGGTTTTAG+TGG - chr4_4:62234960-62234979 None:intergenic 30.0%
TTATGCAACTCATTTACTAG+GGG - chr4_4:62235030-62235049 None:intergenic 30.0%
CATTATGCAACTCATTTACT+AGG - chr4_4:62235032-62235051 None:intergenic 30.0%
!!! CTTTTTTATATTGCTGTGGT+TGG - chr4_4:62232717-62232736 Msa0693320:intron 30.0%
CAACCACAGCAATATAAAAA+AGG + chr4_4:62232715-62232734 Msa0693330:five_prime_UTR 30.0%
ATTCATTCATTCAGTGTAAG+TGG + chr4_4:62232749-62232768 Msa0693330:five_prime_UTR 30.0%
AGGATCACAAGAAGTAAAAA+TGG - chr4_4:62232999-62233018 None:intergenic 30.0%
CTTTATATACGTTAATCGGA+GGG + chr4_4:62233053-62233072 Msa0693330:intron 30.0%
AATTGAAAGAATAGATCGTC+CGG - chr4_4:62233201-62233220 None:intergenic 30.0%
TACTAGGCTAAATTCCAAAA+TGG + chr4_4:62233287-62233306 Msa0693330:intron 30.0%
GCTAAATTCCAAAATGGAAA+TGG + chr4_4:62233293-62233312 Msa0693330:intron 30.0%
GTGCATAATTCGAAATTAAG+TGG + chr4_4:62233425-62233444 Msa0693330:intron 30.0%
!! AAGTCCGTTTTTGCTTTTAA+AGG + chr4_4:62233466-62233485 Msa0693330:intron 30.0%
!! AATTTAGCTTGTTAGCACTT+TGG + chr4_4:62233503-62233522 Msa0693330:intron 30.0%
!! ATTTAGCTTGTTAGCACTTT+GGG + chr4_4:62233504-62233523 Msa0693330:intron 30.0%
! TAACGGTTTATTTGGTTTCA+AGG - chr4_4:62233639-62233658 None:intergenic 30.0%
! CAATATGCTACTTGTTCAAT+TGG - chr4_4:62233982-62234001 None:intergenic 30.0%
CAATTGAACAAGTAGCATAT+TGG + chr4_4:62233980-62233999 Msa0693330:intron 30.0%
CATACAAACTTGCAAAATGT+TGG - chr4_4:62234049-62234068 None:intergenic 30.0%
!! TTTCCTATTTTTCTTCGTGT+AGG + chr4_4:62234456-62234475 Msa0693330:intron 30.0%
! TTATCCATCCATTTTCATAG+GGG - chr4_4:62234492-62234511 None:intergenic 30.0%
TTGACATCATCTATACCAAT+GGG - chr4_4:62234637-62234656 None:intergenic 30.0%
ATTGACATCATCTATACCAA+TGG - chr4_4:62234638-62234657 None:intergenic 30.0%
TGGTATAGATGATGTCAATT+TGG + chr4_4:62234639-62234658 Msa0693330:three_prime_UTR 30.0%
! GAAAAATGAGATTGATAACC+TGG + chr4_4:62234768-62234787 Msa0693330:three_prime_UTR 30.0%
TCCATCTTAGTTGAAAACAA+GGG - chr4_4:62234881-62234900 None:intergenic 30.0%
TTCCATCTTAGTTGAAAACA+AGG - chr4_4:62234882-62234901 None:intergenic 30.0%
!! AAAAACTAGTAGGGTTTTAG+TGG - chr4_4:62234960-62234979 None:intergenic 30.0%
TTATGCAACTCATTTACTAG+GGG - chr4_4:62235030-62235049 None:intergenic 30.0%
CATTATGCAACTCATTTACT+AGG - chr4_4:62235032-62235051 None:intergenic 30.0%
!!! TGCCCTTTTTTATATTGCTG+TGG - chr4_4:62232721-62232740 Msa0693320:intron 35.0%
TTTCACAGAACCTTCTCTAA+CGG + chr4_4:62232862-62232881 Msa0693330:CDS 35.0%
TGAATGAATACCGTTAGAGA+AGG - chr4_4:62232875-62232894 None:intergenic 35.0%
!! GCATGTTGTTGATTCATATC+TGG + chr4_4:62232958-62232977 Msa0693330:intron 35.0%
! GTTGATTCATATCTGGATTC+TGG + chr4_4:62232965-62232984 Msa0693330:intron 35.0%
CCTCCGATTAACGTATATAA+AGG - chr4_4:62233055-62233074 None:intergenic 35.0%
CCTTTATATACGTTAATCGG+AGG + chr4_4:62233052-62233071 Msa0693330:intron 35.0%
AAAAATTGGAGGTGACTGAA+TGG - chr4_4:62233097-62233116 None:intergenic 35.0%
! TTTTGAACTTGATCTGTGTG+TGG + chr4_4:62233124-62233143 Msa0693330:intron 35.0%
TTTGAACTTGATCTGTGTGT+GGG + chr4_4:62233125-62233144 Msa0693330:intron 35.0%
!! TTTAGCTTGTTAGCACTTTG+GGG + chr4_4:62233505-62233524 Msa0693330:intron 35.0%
!! AGTATGCTGATTCTCATGAA+TGG + chr4_4:62234113-62234132 Msa0693330:CDS 35.0%
!! GTATGCTGATTCTCATGAAT+GGG + chr4_4:62234114-62234133 Msa0693330:CDS 35.0%
AACATCACCCAAATGATCTT+GGG - chr4_4:62234185-62234204 None:intergenic 35.0%
TATGTTGAATTGCCAGAAGT+GGG + chr4_4:62234208-62234227 Msa0693330:CDS 35.0%
!! TCAATCACTTTTCCTGAAAC+AGG - chr4_4:62234304-62234323 None:intergenic 35.0%
TGACCTACACGAAGAAAAAT+AGG - chr4_4:62234462-62234481 None:intergenic 35.0%
ATCTTCTTCTTCACAGAACT+TGG - chr4_4:62234575-62234594 None:intergenic 35.0%
!! TGGGAAGTACTGAAAGATAT+CGG - chr4_4:62234618-62234637 None:intergenic 35.0%
TATCTTTCAGTACTTCCCAT+TGG + chr4_4:62234619-62234638 Msa0693330:three_prime_UTR 35.0%
!! TCTCATTTTTCCATTGCGAA+GGG - chr4_4:62234759-62234778 None:intergenic 35.0%
!! ATCTCATTTTTCCATTGCGA+AGG - chr4_4:62234760-62234779 None:intergenic 35.0%
TGAATGTCGTATGACAAAAC+TGG - chr4_4:62234845-62234864 None:intergenic 35.0%
TATGCAACTCATTTACTAGG+GGG - chr4_4:62235029-62235048 None:intergenic 35.0%
!!! TGCCCTTTTTTATATTGCTG+TGG - chr4_4:62232721-62232740 Msa0693320:intron 35.0%
TTTCACAGAACCTTCTCTAA+CGG + chr4_4:62232862-62232881 Msa0693330:CDS 35.0%
TGAATGAATACCGTTAGAGA+AGG - chr4_4:62232875-62232894 None:intergenic 35.0%
!! GCATGTTGTTGATTCATATC+TGG + chr4_4:62232958-62232977 Msa0693330:intron 35.0%
! GTTGATTCATATCTGGATTC+TGG + chr4_4:62232965-62232984 Msa0693330:intron 35.0%
CCTCCGATTAACGTATATAA+AGG - chr4_4:62233055-62233074 None:intergenic 35.0%
CCTTTATATACGTTAATCGG+AGG + chr4_4:62233052-62233071 Msa0693330:intron 35.0%
AAAAATTGGAGGTGACTGAA+TGG - chr4_4:62233097-62233116 None:intergenic 35.0%
! TTTTGAACTTGATCTGTGTG+TGG + chr4_4:62233124-62233143 Msa0693330:intron 35.0%
TTTGAACTTGATCTGTGTGT+GGG + chr4_4:62233125-62233144 Msa0693330:intron 35.0%
!! TTTAGCTTGTTAGCACTTTG+GGG + chr4_4:62233505-62233524 Msa0693330:intron 35.0%
!! AGTATGCTGATTCTCATGAA+TGG + chr4_4:62234113-62234132 Msa0693330:CDS 35.0%
!! GTATGCTGATTCTCATGAAT+GGG + chr4_4:62234114-62234133 Msa0693330:CDS 35.0%
AACATCACCCAAATGATCTT+GGG - chr4_4:62234185-62234204 None:intergenic 35.0%
TATGTTGAATTGCCAGAAGT+GGG + chr4_4:62234208-62234227 Msa0693330:CDS 35.0%
!! TCAATCACTTTTCCTGAAAC+AGG - chr4_4:62234304-62234323 None:intergenic 35.0%
TGACCTACACGAAGAAAAAT+AGG - chr4_4:62234462-62234481 None:intergenic 35.0%
ATCTTCTTCTTCACAGAACT+TGG - chr4_4:62234575-62234594 None:intergenic 35.0%
!! TGGGAAGTACTGAAAGATAT+CGG - chr4_4:62234618-62234637 None:intergenic 35.0%
TATCTTTCAGTACTTCCCAT+TGG + chr4_4:62234619-62234638 Msa0693330:three_prime_UTR 35.0%
!! TCTCATTTTTCCATTGCGAA+GGG - chr4_4:62234759-62234778 None:intergenic 35.0%
!! ATCTCATTTTTCCATTGCGA+AGG - chr4_4:62234760-62234779 None:intergenic 35.0%
TGAATGTCGTATGACAAAAC+TGG - chr4_4:62234845-62234864 None:intergenic 35.0%
TATGCAACTCATTTACTAGG+GGG - chr4_4:62235029-62235048 None:intergenic 35.0%
CATTCATTCAGTGTAAGTGG+TGG + chr4_4:62232752-62232771 Msa0693330:five_prime_UTR 40.0%
TATACGTTAATCGGAGGGAT+CGG + chr4_4:62233058-62233077 Msa0693330:intron 40.0%
! ATCCGCCGTATATCAACTTT+TGG + chr4_4:62233173-62233192 Msa0693330:intron 40.0%
!! CACCAAAAGTTGATATACGG+CGG - chr4_4:62233178-62233197 None:intergenic 40.0%
!! CGGCACCAAAAGTTGATATA+CGG - chr4_4:62233181-62233200 None:intergenic 40.0%
!! CGTATATCAACTTTTGGTGC+CGG + chr4_4:62233179-62233198 Msa0693330:intron 40.0%
!! TTAGCTTGTTAGCACTTTGG+GGG + chr4_4:62233506-62233525 Msa0693330:intron 40.0%
! CGGTTTATTTGGTTTCAAGG+AGG - chr4_4:62233636-62233655 None:intergenic 40.0%
CATGAATGGGTGAAAGTTGA+CGG + chr4_4:62234127-62234146 Msa0693330:CDS 40.0%
CAACATCACCCAAATGATCT+TGG - chr4_4:62234186-62234205 None:intergenic 40.0%
GTATGTTGAATTGCCAGAAG+TGG + chr4_4:62234207-62234226 Msa0693330:CDS 40.0%
! GTGAAACAAGGAGATGGTTT+TGG + chr4_4:62234238-62234257 Msa0693330:CDS 40.0%
GCAATAAAACTCACCAAAGC+AGG - chr4_4:62234352-62234371 None:intergenic 40.0%
AACTCAAGCCCCTATGAAAA+TGG + chr4_4:62234481-62234500 Msa0693330:CDS 40.0%
AAAGTTGAGATGAGTGACAG+TGG + chr4_4:62234514-62234533 Msa0693330:CDS 40.0%
TGGCGAACTTGACAAATTGA+TGG + chr4_4:62234534-62234553 Msa0693330:CDS 40.0%
!! TCATTTTTCCATTGCGAAGG+GGG - chr4_4:62234757-62234776 None:intergenic 40.0%
!! CTCATTTTTCCATTGCGAAG+GGG - chr4_4:62234758-62234777 None:intergenic 40.0%
!!! GCCCTTGTTTTCAACTAAGA+TGG + chr4_4:62234877-62234896 Msa0693330:three_prime_UTR 40.0%
CATTCATTCAGTGTAAGTGG+TGG + chr4_4:62232752-62232771 Msa0693330:five_prime_UTR 40.0%
TATACGTTAATCGGAGGGAT+CGG + chr4_4:62233058-62233077 Msa0693330:intron 40.0%
! ATCCGCCGTATATCAACTTT+TGG + chr4_4:62233173-62233192 Msa0693330:intron 40.0%
!! CACCAAAAGTTGATATACGG+CGG - chr4_4:62233178-62233197 None:intergenic 40.0%
!! CGGCACCAAAAGTTGATATA+CGG - chr4_4:62233181-62233200 None:intergenic 40.0%
!! CGTATATCAACTTTTGGTGC+CGG + chr4_4:62233179-62233198 Msa0693330:intron 40.0%
!! TTAGCTTGTTAGCACTTTGG+GGG + chr4_4:62233506-62233525 Msa0693330:intron 40.0%
! CGGTTTATTTGGTTTCAAGG+AGG - chr4_4:62233636-62233655 None:intergenic 40.0%
CATGAATGGGTGAAAGTTGA+CGG + chr4_4:62234127-62234146 Msa0693330:CDS 40.0%
CAACATCACCCAAATGATCT+TGG - chr4_4:62234186-62234205 None:intergenic 40.0%
GTATGTTGAATTGCCAGAAG+TGG + chr4_4:62234207-62234226 Msa0693330:CDS 40.0%
! GTGAAACAAGGAGATGGTTT+TGG + chr4_4:62234238-62234257 Msa0693330:CDS 40.0%
GCAATAAAACTCACCAAAGC+AGG - chr4_4:62234352-62234371 None:intergenic 40.0%
AACTCAAGCCCCTATGAAAA+TGG + chr4_4:62234481-62234500 Msa0693330:CDS 40.0%
AAAGTTGAGATGAGTGACAG+TGG + chr4_4:62234514-62234533 Msa0693330:CDS 40.0%
TGGCGAACTTGACAAATTGA+TGG + chr4_4:62234534-62234553 Msa0693330:CDS 40.0%
!! TCATTTTTCCATTGCGAAGG+GGG - chr4_4:62234757-62234776 None:intergenic 40.0%
!! CTCATTTTTCCATTGCGAAG+GGG - chr4_4:62234758-62234777 None:intergenic 40.0%
!!! GCCCTTGTTTTCAACTAAGA+TGG + chr4_4:62234877-62234896 Msa0693330:three_prime_UTR 40.0%
!! TTGCTGTGGTTGGTGACAAA+GGG - chr4_4:62232707-62232726 Msa0693320:intron 45.0%
!! ATTGCTGTGGTTGGTGACAA+AGG - chr4_4:62232708-62232727 Msa0693320:intron 45.0%
ACCGCAGACAGAGAAAAAGA+TGG + chr4_4:62232786-62232805 Msa0693330:exon 45.0%
! GCCATCTTTTTCTCTGTCTG+CGG - chr4_4:62232790-62232809 Msa0693320:intron 45.0%
! CAGAGAAAAAGATGGCTTGC+AGG + chr4_4:62232794-62232813 Msa0693330:exon 45.0%
AGAGATCCTGAGGTATGATG+CGG - chr4_4:62232839-62232858 Msa0693320:intron 45.0%
TGTGAAAGACAGAGATCCTG+AGG - chr4_4:62232849-62232868 Msa0693320:CDS 45.0%
CAGATGAGAAGACAGAGACT+CGG - chr4_4:62233902-62233921 None:intergenic 45.0%
GACGGAAAATCTGCAACCAT+TGG + chr4_4:62234145-62234164 Msa0693330:CDS 45.0%
TGATCACGCCCAAGATCATT+TGG + chr4_4:62234174-62234193 Msa0693330:CDS 45.0%
GATCACGCCCAAGATCATTT+GGG + chr4_4:62234175-62234194 Msa0693330:CDS 45.0%
TGAATTGCCAGAAGTGGGAA+CGG + chr4_4:62234213-62234232 Msa0693330:CDS 45.0%
! TGGTGCAGTTGAAAGTGTGA+AGG + chr4_4:62234258-62234277 Msa0693330:CDS 45.0%
GACATCAACTCTCCTGTTTC+AGG + chr4_4:62234289-62234308 Msa0693330:CDS 45.0%
CAAGCCCCTATGAAAATGGA+TGG + chr4_4:62234485-62234504 Msa0693330:CDS 45.0%
TCGGCAAGACTATCAATGAC+TGG - chr4_4:62234599-62234618 None:intergenic 45.0%
! GATATTTTCCCCCTTCGCAA+TGG + chr4_4:62234746-62234765 Msa0693330:three_prime_UTR 45.0%
!! TTGCTGTGGTTGGTGACAAA+GGG - chr4_4:62232707-62232726 Msa0693320:intron 45.0%
!! ATTGCTGTGGTTGGTGACAA+AGG - chr4_4:62232708-62232727 Msa0693320:intron 45.0%
ACCGCAGACAGAGAAAAAGA+TGG + chr4_4:62232786-62232805 Msa0693330:exon 45.0%
! GCCATCTTTTTCTCTGTCTG+CGG - chr4_4:62232790-62232809 Msa0693320:intron 45.0%
! CAGAGAAAAAGATGGCTTGC+AGG + chr4_4:62232794-62232813 Msa0693330:exon 45.0%
AGAGATCCTGAGGTATGATG+CGG - chr4_4:62232839-62232858 Msa0693320:intron 45.0%
TGTGAAAGACAGAGATCCTG+AGG - chr4_4:62232849-62232868 Msa0693320:CDS 45.0%
CAGATGAGAAGACAGAGACT+CGG - chr4_4:62233902-62233921 None:intergenic 45.0%
GACGGAAAATCTGCAACCAT+TGG + chr4_4:62234145-62234164 Msa0693330:CDS 45.0%
TGATCACGCCCAAGATCATT+TGG + chr4_4:62234174-62234193 Msa0693330:CDS 45.0%
GATCACGCCCAAGATCATTT+GGG + chr4_4:62234175-62234194 Msa0693330:CDS 45.0%
TGAATTGCCAGAAGTGGGAA+CGG + chr4_4:62234213-62234232 Msa0693330:CDS 45.0%
! TGGTGCAGTTGAAAGTGTGA+AGG + chr4_4:62234258-62234277 Msa0693330:CDS 45.0%
GACATCAACTCTCCTGTTTC+AGG + chr4_4:62234289-62234308 Msa0693330:CDS 45.0%
CAAGCCCCTATGAAAATGGA+TGG + chr4_4:62234485-62234504 Msa0693330:CDS 45.0%
TCGGCAAGACTATCAATGAC+TGG - chr4_4:62234599-62234618 None:intergenic 45.0%
! GATATTTTCCCCCTTCGCAA+TGG + chr4_4:62234746-62234765 Msa0693330:three_prime_UTR 45.0%
!! TTCAAAAAAAAAATAAAAAT+TGG - chr4_4:62233111-62233130 None:intergenic 5.0%
!! TTCAAAAAAAAAATAAAAAT+TGG - chr4_4:62233111-62233130 None:intergenic 5.0%
! AGATGGCTTGCAGGCAGTTA+TGG + chr4_4:62232803-62232822 Msa0693330:exon 50.0%
! GATGGCTTGCAGGCAGTTAT+GGG + chr4_4:62232804-62232823 Msa0693330:exon 50.0%
GGCGTGATCAGTTATGCCAA+TGG - chr4_4:62234164-62234183 None:intergenic 50.0%
ACGGCAGTGAAACAAGGAGA+TGG + chr4_4:62234232-62234251 Msa0693330:CDS 50.0%
! TGTGCTAGCTTCTGATGCAG+AGG + chr4_4:62234720-62234739 Msa0693330:three_prime_UTR 50.0%
! GTGCTAGCTTCTGATGCAGA+GGG + chr4_4:62234721-62234740 Msa0693330:three_prime_UTR 50.0%
! AGATGGCTTGCAGGCAGTTA+TGG + chr4_4:62232803-62232822 Msa0693330:exon 50.0%
! GATGGCTTGCAGGCAGTTAT+GGG + chr4_4:62232804-62232823 Msa0693330:exon 50.0%
GGCGTGATCAGTTATGCCAA+TGG - chr4_4:62234164-62234183 None:intergenic 50.0%
ACGGCAGTGAAACAAGGAGA+TGG + chr4_4:62234232-62234251 Msa0693330:CDS 50.0%
! TGTGCTAGCTTCTGATGCAG+AGG + chr4_4:62234720-62234739 Msa0693330:three_prime_UTR 50.0%
! GTGCTAGCTTCTGATGCAGA+GGG + chr4_4:62234721-62234740 Msa0693330:three_prime_UTR 50.0%
TTCACTGCCGTTCCCACTTC+TGG - chr4_4:62234223-62234242 None:intergenic 55.0%
GTGGGAACGGCAGTGAAACA+AGG + chr4_4:62234226-62234245 Msa0693330:CDS 55.0%
GCTCAGCAACTCTCCTGCTT+TGG + chr4_4:62234336-62234355 Msa0693330:CDS 55.0%
TTCACTGCCGTTCCCACTTC+TGG - chr4_4:62234223-62234242 None:intergenic 55.0%
GTGGGAACGGCAGTGAAACA+AGG + chr4_4:62234226-62234245 Msa0693330:CDS 55.0%
GCTCAGCAACTCTCCTGCTT+TGG + chr4_4:62234336-62234355 Msa0693330:CDS 55.0%
CCTGAGGTATGATGCGGCTC+TGG - chr4_4:62232833-62232852 Msa0693320:intron 60.0%
CCAGAGCCGCATCATACCTC+AGG + chr4_4:62232830-62232849 Msa0693330:CDS 60.0%
CCTGAGGTATGATGCGGCTC+TGG - chr4_4:62232833-62232852 Msa0693320:intron 60.0%
CCAGAGCCGCATCATACCTC+AGG + chr4_4:62232830-62232849 Msa0693330:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 62232680 62235059 62232680 ID=Msa0693330;Name=Msa0693330
chr4_4 mRNA 62232680 62235059 62232680 ID=Msa0693330-mRNA-1;Parent=Msa0693330;Name=Msa0693330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=125|1|1|1|1|0.66|3|453|155
chr4_4 exon 62232680 62232883 62232680 ID=Msa0693330-mRNA-1:exon:17336;Parent=Msa0693330-mRNA-1
chr4_4 exon 62234098 62234357 62234098 ID=Msa0693330-mRNA-1:exon:17337;Parent=Msa0693330-mRNA-1
chr4_4 exon 62234478 62235059 62234478 ID=Msa0693330-mRNA-1:exon:17338;Parent=Msa0693330-mRNA-1
chr4_4 five_prime_UTR 62232680 62232804 62232680 ID=Msa0693330-mRNA-1:five_prime_utr;Parent=Msa0693330-mRNA-1
chr4_4 CDS 62232805 62232883 62232805 ID=Msa0693330-mRNA-1:cds;Parent=Msa0693330-mRNA-1
chr4_4 CDS 62234098 62234357 62234098 ID=Msa0693330-mRNA-1:cds;Parent=Msa0693330-mRNA-1
chr4_4 CDS 62234478 62234606 62234478 ID=Msa0693330-mRNA-1:cds;Parent=Msa0693330-mRNA-1
chr4_4 three_prime_UTR 62234607 62235059 62234607 ID=Msa0693330-mRNA-1:three_prime_utr;Parent=Msa0693330-mRNA-1
Gene Sequence

>Msa0693330

ATGGCTTGCAGGCAGTTATGGGCATCCAGAGCCGCATCATACCTCAGGATCTCTGTCTTTCACAGAACCTTCTCTAACGTTCTGAACAATCTGAAGTATGCTGATTCTCATGAATGGGTGAAAGTTGACGGAAAATCTGCAACCATTGGCATAACTGATCACGCCCAAGATCATTTGGGTGATGTTGTGTATGTTGAATTGCCAGAAGTGGGAACGGCAGTGAAACAAGGAGATGGTTTTGGTGCAGTTGAAAGTGTGAAGGCAACTAGTGACATCAACTCTCCTGTTTCAGGAAAAGTGATTGAAGTTAATGAAGAGCTCAGCAACTCTCCTGCTTTGGTCAACTCAAGCCCCTATGAAAATGGATGGATAATTAAAGTTGAGATGAGTGACAGTGGCGAACTTGACAAATTGATGGATTCAAAAAAGTATACCAAGTTCTGTGAAGAAGAAGATTCCAGTCATTGA

Protein sequence

>Msa0693330

MACRQLWASRAASYLRISVFHRTFSNVLNNLKYADSHEWVKVDGKSATIGITDHAQDHLGDVVYVELPEVGTAVKQGDGFGAVESVKATSDINSPVSGKVIEVNEELSNSPALVNSSPYENGWIIKVEMSDSGELDKLMDSKKYTKFCEEEDSSH*