AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0218830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218830 MtrunA17_Chr2g0321121 96.460 113 4 0 1 113 1 113 3.55e-70 205
Msa0218830 MtrunA17_Chr5g0421491 87.611 113 14 0 1 113 1 113 5.16e-38 124
Msa0218830 MtrunA17_Chr1g0179001 73.451 113 29 1 1 113 1 112 8.39e-30 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218830 AT2G27710.4 77.143 70 16 0 1 70 1 70 9.36e-32 108
Msa0218830 AT3G44590.1 67.257 113 35 2 1 113 1 111 8.38e-30 103
Msa0218830 AT3G44590.2 67.257 113 35 2 1 113 1 111 8.38e-30 103
Msa0218830 AT2G27720.1 66.087 115 37 1 1 113 1 115 1.93e-27 97.8
Msa0218830 AT2G27710.1 75.385 65 16 0 1 65 1 65 2.45e-25 92.4
Msa0218830 AT2G27710.2 75.385 65 16 0 1 65 1 65 2.45e-25 92.4
Msa0218830 AT2G27710.3 75.385 65 16 0 1 65 1 65 2.45e-25 92.4
Msa0218830 AT3G28500.1 55.652 115 49 2 1 113 1 115 3.14e-25 92.0
Msa0218830 AT2G27720.3 59.843 127 37 2 1 113 1 127 6.69e-24 89.0
Msa0218830 AT2G27720.2 57.692 130 38 2 1 113 1 130 1.44e-22 85.9
Msa0218830 AT5G40040.1 57.895 114 47 1 1 113 1 114 2.30e-16 69.3
Msa0218830 AT2G27720.4 66.667 87 27 1 29 113 5 91 5.67e-13 60.1

Find 50 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTACTTGTTGGCCGTTT+TGG 0.128749 2_1:-66321370 Msa0218830:CDS
ATTCAGCTTATTTGATTAAA+AGG 0.186887 2_1:-66320010 Msa0218830:exon
GCTGATCTTAAACAAATTCT+TGG 0.267351 2_1:-66321324 Msa0218830:CDS
GTTGCTGTGTCTGCTGCAAC+TGG 0.362343 2_1:-66320207 Msa0218830:CDS
TCTTCCTTTGCTGCTTCAGC+AGG 0.362525 2_1:+66320162 None:intergenic
CTTAAACAAATTCTTGGATC+AGG 0.372982 2_1:-66321318 Msa0218830:intron
TTTCAATTTAATCTGCGTTA+TGG 0.375448 2_1:-66319872 Msa0218830:three_prime_UTR
GTTATCTTTGTGCAGGATAT+GGG 0.399106 2_1:-66320033 Msa0218830:intron
AGAGAAGAAGGTGGAAGAGA+AGG 0.434796 2_1:-66320142 Msa0218830:CDS
GATTATCGCAGCTTACTTGT+TGG 0.445399 2_1:-66321379 Msa0218830:CDS
GTGTCTGCTGCAACTGGAGG+AGG 0.445905 2_1:-66320201 Msa0218830:CDS
TGCGGCTTGCAACATCCCTC+TGG 0.459037 2_1:-66321552 Msa0218830:five_prime_UTR
CCAAGTTGATATTTATTGAC+TGG 0.461135 2_1:-66319681 Msa0218830:three_prime_UTR
GATATCTTACTTGATGGAAA+TGG 0.461532 2_1:+66321496 None:intergenic
GATCAGCAGCTGAAGGGGAT+TGG 0.469713 2_1:+66321340 None:intergenic
CCTTGCCCTTGACTTCACTT+AGG 0.488662 2_1:+66320295 None:intergenic
TGCCAGTGGAAGAGAAAAGT+TGG 0.491656 2_1:-66320256 Msa0218830:CDS
TTGACTGGTACACCAGATGT+AGG 0.496222 2_1:-66319666 Msa0218830:three_prime_UTR
CACAGCAACAGCACCACCAC+CGG 0.500128 2_1:+66320221 None:intergenic
AGCAGCAAAGGAAGAGAAGA+AGG 0.518126 2_1:-66320154 Msa0218830:CDS
CGAATGAGATCTCGACTTGA+CGG 0.519429 2_1:+66321519 None:intergenic
GCTTCAGTTCCATCCGGTGG+TGG 0.522209 2_1:-66320234 Msa0218830:CDS
CCAGTCAATAAATATCAACT+TGG 0.526486 2_1:+66319681 None:intergenic
TGCACCTGCTGAAGCAGCAA+AGG 0.528481 2_1:-66320166 Msa0218830:CDS
GGATTGGTTGCCTCCCAAAA+CGG 0.534645 2_1:+66321356 None:intergenic
CAACTCAATGTTGCCATCCT+CGG 0.536919 2_1:+66320320 None:intergenic
GCAACAGCACCACCACCGGA+TGG 0.539099 2_1:+66320225 None:intergenic
TGTTTAAGATCAGCAGCTGA+AGG 0.541739 2_1:+66321333 None:intergenic
TCTTCCACTGGCAATAAGCT+CGG 0.547245 2_1:+66320266 None:intergenic
TGAGATCTCGACTTGACGGT+AGG 0.550232 2_1:+66321523 None:intergenic
GTTTAAGATCAGCAGCTGAA+GGG 0.564265 2_1:+66321334 None:intergenic
TTTAAGATCAGCAGCTGAAG+GGG 0.564880 2_1:+66321335 None:intergenic
AAGTTGGCTTCAGTTCCATC+CGG 0.567453 2_1:-66320240 Msa0218830:CDS
GACGGTAGGGTTTCACCAGA+GGG 0.572119 2_1:+66321537 None:intergenic
GTTGGAGTTGAGGCCGAGGA+TGG 0.573673 2_1:-66320333 Msa0218830:CDS
TGACTGGTACACCAGATGTA+GGG 0.583188 2_1:-66319665 None:intergenic
GAGATCTCGACTTGACGGTA+GGG 0.584480 2_1:+66321524 None:intergenic
GTTGCTCCTAAGTGAAGTCA+AGG 0.590863 2_1:-66320301 Msa0218830:CDS
GCTGTGTCTGCTGCAACTGG+AGG 0.592795 2_1:-66320204 Msa0218830:CDS
ATTGTCTTAATATTATTGCA+TGG 0.594069 2_1:-66319707 Msa0218830:three_prime_UTR
TATGATTGTAGTTGGAGTTG+AGG 0.599920 2_1:-66320343 Msa0218830:intron
CATGAATCAACCACTAGAGG+AGG 0.604458 2_1:+66319791 None:intergenic
TTTGCCGAGCTTATTGCCAG+TGG 0.606365 2_1:-66320270 Msa0218830:CDS
TTGGCTTCAGTTCCATCCGG+TGG 0.607108 2_1:-66320237 Msa0218830:CDS
TGACGGTAGGGTTTCACCAG+AGG 0.609194 2_1:+66321536 None:intergenic
ATTCATGAATCAACCACTAG+AGG 0.615895 2_1:+66319788 None:intergenic
CCTAAGTGAAGTCAAGGGCA+AGG 0.616488 2_1:-66320295 Msa0218830:CDS
TGTAGTTGGAGTTGAGGCCG+AGG 0.617745 2_1:-66320337 Msa0218830:intron
TTGCTCCTAAGTGAAGTCAA+GGG 0.680870 2_1:-66320300 Msa0218830:CDS
AGCAAAGGAAGAGAAGAAGG+TGG 0.683753 2_1:-66320151 Msa0218830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGATTAAAGATTAAATT+GGG + chr2_1:66319936-66319955 None:intergenic 10.0%
!! AATTAGATTAAAGATTAAAT+TGG + chr2_1:66319937-66319956 None:intergenic 10.0%
!!! AAATAATTTTAATTCAAGTT+TGG - chr2_1:66320338-66320357 Msa0218830:intron 10.0%
!!! AATAATTTTAATTCAAGTTT+GGG - chr2_1:66320339-66320358 Msa0218830:intron 10.0%
!! ATTAGATTAAAGATTAAATT+GGG + chr2_1:66319936-66319955 None:intergenic 10.0%
!! AATTAGATTAAAGATTAAAT+TGG + chr2_1:66319937-66319956 None:intergenic 10.0%
!!! AAATAATTTTAATTCAAGTT+TGG - chr2_1:66320338-66320357 Msa0218830:intron 10.0%
!!! AATAATTTTAATTCAAGTTT+GGG - chr2_1:66320339-66320358 Msa0218830:intron 10.0%
!!! TTTAACTTTAATTCAAGTTT+GGG - chr2_1:66320372-66320391 Msa0218830:intron 15.0%
!! ATGAAAATTGATCAAAATAT+TGG - chr2_1:66320420-66320439 Msa0218830:intron 15.0%
!! TTAAAATCAAACCAATATAT+GGG + chr2_1:66320694-66320713 None:intergenic 15.0%
!! ATTAAAATCAAACCAATATA+TGG + chr2_1:66320695-66320714 None:intergenic 15.0%
!!! AAAAAAAGTGACTTTATTTT+TGG - chr2_1:66320848-66320867 Msa0218830:intron 15.0%
!!! AAAAAAGTGACTTTATTTTT+GGG - chr2_1:66320849-66320868 Msa0218830:intron 15.0%
!!! TTTAACTTTAATTCAAGTTT+GGG - chr2_1:66320372-66320391 Msa0218830:intron 15.0%
!! ATGAAAATTGATCAAAATAT+TGG - chr2_1:66320420-66320439 Msa0218830:intron 15.0%
!! TTAAAATCAAACCAATATAT+GGG + chr2_1:66320694-66320713 None:intergenic 15.0%
!! ATTAAAATCAAACCAATATA+TGG + chr2_1:66320695-66320714 None:intergenic 15.0%
!!! AAAAAAAGTGACTTTATTTT+TGG - chr2_1:66320848-66320867 Msa0218830:intron 15.0%
!!! AAAAAAGTGACTTTATTTTT+GGG - chr2_1:66320849-66320868 Msa0218830:intron 15.0%
!! ATGGATCTACTAAAATAATT+CGG + chr2_1:66320030-66320049 None:intergenic 20.0%
!!! ATATTCTACACTTTTACTTA+TGG + chr2_1:66320049-66320068 None:intergenic 20.0%
!!! TGCTAATTTAATTCAAGTTT+AGG - chr2_1:66320175-66320194 Msa0218830:CDS 20.0%
!!! TTTAATTCAAGTTTAGGATT+TGG - chr2_1:66320181-66320200 Msa0218830:CDS 20.0%
!!! GGATTTGGTTAATTTATAAT+CGG - chr2_1:66320196-66320215 Msa0218830:CDS 20.0%
!!! GTTTAACTTTAATTCAAGTT+TGG - chr2_1:66320371-66320390 Msa0218830:intron 20.0%
!!! GATCAAAATATTGGTTTATT+TGG - chr2_1:66320429-66320448 Msa0218830:intron 20.0%
!!! AAATATTGGTTTATTTGGAT+TGG - chr2_1:66320434-66320453 Msa0218830:intron 20.0%
!! TATAGTTTATGCAAATTCAT+AGG - chr2_1:66320608-66320627 Msa0218830:intron 20.0%
!! TAAAATCAAACCAATATATG+GGG + chr2_1:66320693-66320712 None:intergenic 20.0%
!!! AATTTTGAAACTTACATCAT+CGG + chr2_1:66321107-66321126 None:intergenic 20.0%
!! ATTCAGCTTATTTGATTAAA+AGG - chr2_1:66321207-66321226 Msa0218830:intron 20.0%
!! ATTGTCTTAATATTATTGCA+TGG - chr2_1:66321510-66321529 Msa0218830:five_prime_UTR 20.0%
!! ATGGATCTACTAAAATAATT+CGG + chr2_1:66320030-66320049 None:intergenic 20.0%
!!! ATATTCTACACTTTTACTTA+TGG + chr2_1:66320049-66320068 None:intergenic 20.0%
!!! TGCTAATTTAATTCAAGTTT+AGG - chr2_1:66320175-66320194 Msa0218830:CDS 20.0%
!!! TTTAATTCAAGTTTAGGATT+TGG - chr2_1:66320181-66320200 Msa0218830:CDS 20.0%
!!! GGATTTGGTTAATTTATAAT+CGG - chr2_1:66320196-66320215 Msa0218830:CDS 20.0%
!!! GTTTAACTTTAATTCAAGTT+TGG - chr2_1:66320371-66320390 Msa0218830:intron 20.0%
!!! GATCAAAATATTGGTTTATT+TGG - chr2_1:66320429-66320448 Msa0218830:intron 20.0%
!!! AAATATTGGTTTATTTGGAT+TGG - chr2_1:66320434-66320453 Msa0218830:intron 20.0%
!! TATAGTTTATGCAAATTCAT+AGG - chr2_1:66320608-66320627 Msa0218830:intron 20.0%
!! TAAAATCAAACCAATATATG+GGG + chr2_1:66320693-66320712 None:intergenic 20.0%
!!! AATTTTGAAACTTACATCAT+CGG + chr2_1:66321107-66321126 None:intergenic 20.0%
!! ATTCAGCTTATTTGATTAAA+AGG - chr2_1:66321207-66321226 Msa0218830:intron 20.0%
!! ATTGTCTTAATATTATTGCA+TGG - chr2_1:66321510-66321529 Msa0218830:five_prime_UTR 20.0%
! CAAACATTAAACAAAAACGA+TGG + chr2_1:66319805-66319824 None:intergenic 25.0%
! TTACTTTCAATTAGAGATTG+TGG - chr2_1:66320073-66320092 Msa0218830:intron 25.0%
! TACTTTCAATTAGAGATTGT+GGG - chr2_1:66320074-66320093 Msa0218830:intron 25.0%
! AAATAATCAATCCTAGAATG+TGG - chr2_1:66320131-66320150 Msa0218830:CDS 25.0%
! AATAATCAATCCTAGAATGT+GGG - chr2_1:66320132-66320151 Msa0218830:CDS 25.0%
! TTAAAATCGATGAATGAACA+TGG - chr2_1:66320224-66320243 Msa0218830:CDS 25.0%
! TAAAATCGATGAATGAACAT+GGG - chr2_1:66320225-66320244 Msa0218830:CDS 25.0%
!!! ATTTTAATTCAAGTTTGGGT+TGG - chr2_1:66320343-66320362 Msa0218830:intron 25.0%
!!! TTTTAATTCAAGTTTGGGTT+GGG - chr2_1:66320344-66320363 Msa0218830:intron 25.0%
!!! GCTTAGTTTTATACATTGTT+TGG - chr2_1:66320715-66320734 Msa0218830:intron 25.0%
!! TAGTAGTATTGTTTGTTACT+TGG - chr2_1:66321129-66321148 Msa0218830:intron 25.0%
! TTTCAATTTAATCTGCGTTA+TGG - chr2_1:66321345-66321364 Msa0218830:CDS 25.0%
! CAAACATTAAACAAAAACGA+TGG + chr2_1:66319805-66319824 None:intergenic 25.0%
! TTACTTTCAATTAGAGATTG+TGG - chr2_1:66320073-66320092 Msa0218830:intron 25.0%
! TACTTTCAATTAGAGATTGT+GGG - chr2_1:66320074-66320093 Msa0218830:intron 25.0%
! AAATAATCAATCCTAGAATG+TGG - chr2_1:66320131-66320150 Msa0218830:CDS 25.0%
! AATAATCAATCCTAGAATGT+GGG - chr2_1:66320132-66320151 Msa0218830:CDS 25.0%
! TTAAAATCGATGAATGAACA+TGG - chr2_1:66320224-66320243 Msa0218830:CDS 25.0%
! TAAAATCGATGAATGAACAT+GGG - chr2_1:66320225-66320244 Msa0218830:CDS 25.0%
!!! ATTTTAATTCAAGTTTGGGT+TGG - chr2_1:66320343-66320362 Msa0218830:intron 25.0%
!!! TTTTAATTCAAGTTTGGGTT+GGG - chr2_1:66320344-66320363 Msa0218830:intron 25.0%
!!! GCTTAGTTTTATACATTGTT+TGG - chr2_1:66320715-66320734 Msa0218830:intron 25.0%
!! TAGTAGTATTGTTTGTTACT+TGG - chr2_1:66321129-66321148 Msa0218830:intron 25.0%
! TTTCAATTTAATCTGCGTTA+TGG - chr2_1:66321345-66321364 Msa0218830:CDS 25.0%
GATATCTTACTTGATGGAAA+TGG + chr2_1:66319724-66319743 None:intergenic 30.0%
GAAATCGATATCTTACTTGA+TGG + chr2_1:66319730-66319749 None:intergenic 30.0%
! AAACTTCACTCTTTTACGTT+TGG - chr2_1:66319758-66319777 Msa0218830:three_prime_UTR 30.0%
! AACTTCACTCTTTTACGTTT+GGG - chr2_1:66319759-66319778 Msa0218830:three_prime_UTR 30.0%
GCTGATCTTAAACAAATTCT+TGG - chr2_1:66319893-66319912 Msa0218830:three_prime_UTR 30.0%
CTTAAACAAATTCTTGGATC+AGG - chr2_1:66319899-66319918 Msa0218830:three_prime_UTR 30.0%
TATCTACTGTTAGACTGTTA+AGG - chr2_1:66320470-66320489 Msa0218830:intron 30.0%
CCAGTCAATAAATATCAACT+TGG + chr2_1:66321539-66321558 None:intergenic 30.0%
!! CCAAGTTGATATTTATTGAC+TGG - chr2_1:66321536-66321555 Msa0218830:five_prime_UTR 30.0%
GATATCTTACTTGATGGAAA+TGG + chr2_1:66319724-66319743 None:intergenic 30.0%
GAAATCGATATCTTACTTGA+TGG + chr2_1:66319730-66319749 None:intergenic 30.0%
! AAACTTCACTCTTTTACGTT+TGG - chr2_1:66319758-66319777 Msa0218830:three_prime_UTR 30.0%
! AACTTCACTCTTTTACGTTT+GGG - chr2_1:66319759-66319778 Msa0218830:three_prime_UTR 30.0%
GCTGATCTTAAACAAATTCT+TGG - chr2_1:66319893-66319912 Msa0218830:three_prime_UTR 30.0%
CTTAAACAAATTCTTGGATC+AGG - chr2_1:66319899-66319918 Msa0218830:three_prime_UTR 30.0%
TATCTACTGTTAGACTGTTA+AGG - chr2_1:66320470-66320489 Msa0218830:intron 30.0%
CCAGTCAATAAATATCAACT+TGG + chr2_1:66321539-66321558 None:intergenic 30.0%
!! CCAAGTTGATATTTATTGAC+TGG - chr2_1:66321536-66321555 Msa0218830:five_prime_UTR 30.0%
!!! GCGTTTTTTGTTTGTTTTCC+CGG - chr2_1:66319991-66320010 Msa0218830:three_prime_UTR 35.0%
ATTCGGATACTAATCGAAAC+CGG + chr2_1:66320013-66320032 None:intergenic 35.0%
CTTCATTATACCCACATTCT+AGG + chr2_1:66320145-66320164 None:intergenic 35.0%
TTATCTACTGTTGGACAGTT+TGG - chr2_1:66320274-66320293 Msa0218830:CDS 35.0%
TATCTACTGTTGGACAGTTT+GGG - chr2_1:66320275-66320294 Msa0218830:CDS 35.0%
AATCAAACAGCCCCATATAT+TGG - chr2_1:66320680-66320699 Msa0218830:intron 35.0%
TTTGGGTCTATGATTGTAGT+TGG - chr2_1:66320866-66320885 Msa0218830:intron 35.0%
TATGATTGTAGTTGGAGTTG+AGG - chr2_1:66320874-66320893 Msa0218830:intron 35.0%
TGTTATCTTTGTGCAGGATA+TGG - chr2_1:66321183-66321202 Msa0218830:intron 35.0%
GTTATCTTTGTGCAGGATAT+GGG - chr2_1:66321184-66321203 Msa0218830:intron 35.0%
ATTCATGAATCAACCACTAG+AGG + chr2_1:66321432-66321451 None:intergenic 35.0%
!!! GCGTTTTTTGTTTGTTTTCC+CGG - chr2_1:66319991-66320010 Msa0218830:three_prime_UTR 35.0%
ATTCGGATACTAATCGAAAC+CGG + chr2_1:66320013-66320032 None:intergenic 35.0%
CTTCATTATACCCACATTCT+AGG + chr2_1:66320145-66320164 None:intergenic 35.0%
TTATCTACTGTTGGACAGTT+TGG - chr2_1:66320274-66320293 Msa0218830:CDS 35.0%
TATCTACTGTTGGACAGTTT+GGG - chr2_1:66320275-66320294 Msa0218830:CDS 35.0%
AATCAAACAGCCCCATATAT+TGG - chr2_1:66320680-66320699 Msa0218830:intron 35.0%
TTTGGGTCTATGATTGTAGT+TGG - chr2_1:66320866-66320885 Msa0218830:intron 35.0%
TATGATTGTAGTTGGAGTTG+AGG - chr2_1:66320874-66320893 Msa0218830:intron 35.0%
TGTTATCTTTGTGCAGGATA+TGG - chr2_1:66321183-66321202 Msa0218830:intron 35.0%
GTTATCTTTGTGCAGGATAT+GGG - chr2_1:66321184-66321203 Msa0218830:intron 35.0%
ATTCATGAATCAACCACTAG+AGG + chr2_1:66321432-66321451 None:intergenic 35.0%
GATTATCGCAGCTTACTTGT+TGG - chr2_1:66319838-66319857 Msa0218830:three_prime_UTR 40.0%
! TTTAAGATCAGCAGCTGAAG+GGG + chr2_1:66319885-66319904 None:intergenic 40.0%
! GTTTAAGATCAGCAGCTGAA+GGG + chr2_1:66319886-66319905 None:intergenic 40.0%
! TGTTTAAGATCAGCAGCTGA+AGG + chr2_1:66319887-66319906 None:intergenic 40.0%
TTCGGATACTAATCGAAACC+GGG + chr2_1:66320012-66320031 None:intergenic 40.0%
TGAATGAACATGGGTCTGTT+TGG - chr2_1:66320234-66320253 Msa0218830:CDS 40.0%
CGTTTGAGCTTATCTACTGT+TGG - chr2_1:66320265-66320284 Msa0218830:CDS 40.0%
TTGCTCCTAAGTGAAGTCAA+GGG - chr2_1:66320917-66320936 Msa0218830:intron 40.0%
GCGTAATGTTATCTTTGTGC+AGG - chr2_1:66321177-66321196 Msa0218830:intron 40.0%
GATTATCGCAGCTTACTTGT+TGG - chr2_1:66319838-66319857 Msa0218830:three_prime_UTR 40.0%
! TTTAAGATCAGCAGCTGAAG+GGG + chr2_1:66319885-66319904 None:intergenic 40.0%
! GTTTAAGATCAGCAGCTGAA+GGG + chr2_1:66319886-66319905 None:intergenic 40.0%
! TGTTTAAGATCAGCAGCTGA+AGG + chr2_1:66319887-66319906 None:intergenic 40.0%
TTCGGATACTAATCGAAACC+GGG + chr2_1:66320012-66320031 None:intergenic 40.0%
TGAATGAACATGGGTCTGTT+TGG - chr2_1:66320234-66320253 Msa0218830:CDS 40.0%
CGTTTGAGCTTATCTACTGT+TGG - chr2_1:66320265-66320284 Msa0218830:CDS 40.0%
TTGCTCCTAAGTGAAGTCAA+GGG - chr2_1:66320917-66320936 Msa0218830:intron 40.0%
GCGTAATGTTATCTTTGTGC+AGG - chr2_1:66321177-66321196 Msa0218830:intron 40.0%
! CGAATGAGATCTCGACTTGA+CGG + chr2_1:66319701-66319720 None:intergenic 45.0%
!! AGCTTACTTGTTGGCCGTTT+TGG - chr2_1:66319847-66319866 Msa0218830:three_prime_UTR 45.0%
!! GCTTACTTGTTGGCCGTTTT+GGG - chr2_1:66319848-66319867 Msa0218830:three_prime_UTR 45.0%
GAACATGGGTCTGTTTGGAT+TGG - chr2_1:66320239-66320258 Msa0218830:CDS 45.0%
CAACTCAATGTTGCCATCCT+CGG + chr2_1:66320900-66320919 None:intergenic 45.0%
GTTGCTCCTAAGTGAAGTCA+AGG - chr2_1:66320916-66320935 Msa0218830:intron 45.0%
TCTTCCACTGGCAATAAGCT+CGG + chr2_1:66320954-66320973 None:intergenic 45.0%
TGCCAGTGGAAGAGAAAAGT+TGG - chr2_1:66320961-66320980 Msa0218830:intron 45.0%
! AGCCAACTTTTCTCTTCCAC+TGG + chr2_1:66320966-66320985 None:intergenic 45.0%
! AAGTTGGCTTCAGTTCCATC+CGG - chr2_1:66320977-66320996 Msa0218830:intron 45.0%
AGCAGCAAAGGAAGAGAAGA+AGG - chr2_1:66321063-66321082 Msa0218830:intron 45.0%
AGCAAAGGAAGAGAAGAAGG+TGG - chr2_1:66321066-66321085 Msa0218830:intron 45.0%
AGAGAAGAAGGTGGAAGAGA+AGG - chr2_1:66321075-66321094 Msa0218830:intron 45.0%
! TCTCTCTTTTCCTCCTCTAG+TGG - chr2_1:66321416-66321435 Msa0218830:intron 45.0%
CATGAATCAACCACTAGAGG+AGG + chr2_1:66321429-66321448 None:intergenic 45.0%
TTGACTGGTACACCAGATGT+AGG - chr2_1:66321551-66321570 Msa0218830:five_prime_UTR 45.0%
TGACTGGTACACCAGATGTA+GGG - chr2_1:66321552-66321571 Msa0218830:five_prime_UTR 45.0%
! CGAATGAGATCTCGACTTGA+CGG + chr2_1:66319701-66319720 None:intergenic 45.0%
!! AGCTTACTTGTTGGCCGTTT+TGG - chr2_1:66319847-66319866 Msa0218830:three_prime_UTR 45.0%
!! GCTTACTTGTTGGCCGTTTT+GGG - chr2_1:66319848-66319867 Msa0218830:three_prime_UTR 45.0%
GAACATGGGTCTGTTTGGAT+TGG - chr2_1:66320239-66320258 Msa0218830:CDS 45.0%
CAACTCAATGTTGCCATCCT+CGG + chr2_1:66320900-66320919 None:intergenic 45.0%
GTTGCTCCTAAGTGAAGTCA+AGG - chr2_1:66320916-66320935 Msa0218830:intron 45.0%
TCTTCCACTGGCAATAAGCT+CGG + chr2_1:66320954-66320973 None:intergenic 45.0%
TGCCAGTGGAAGAGAAAAGT+TGG - chr2_1:66320961-66320980 Msa0218830:intron 45.0%
! AGCCAACTTTTCTCTTCCAC+TGG + chr2_1:66320966-66320985 None:intergenic 45.0%
! AAGTTGGCTTCAGTTCCATC+CGG - chr2_1:66320977-66320996 Msa0218830:intron 45.0%
AGCAGCAAAGGAAGAGAAGA+AGG - chr2_1:66321063-66321082 Msa0218830:intron 45.0%
AGCAAAGGAAGAGAAGAAGG+TGG - chr2_1:66321066-66321085 Msa0218830:intron 45.0%
AGAGAAGAAGGTGGAAGAGA+AGG - chr2_1:66321075-66321094 Msa0218830:intron 45.0%
! TCTCTCTTTTCCTCCTCTAG+TGG - chr2_1:66321416-66321435 Msa0218830:intron 45.0%
CATGAATCAACCACTAGAGG+AGG + chr2_1:66321429-66321448 None:intergenic 45.0%
! GAGATCTCGACTTGACGGTA+GGG + chr2_1:66319696-66319715 None:intergenic 50.0%
! TGAGATCTCGACTTGACGGT+AGG + chr2_1:66319697-66319716 None:intergenic 50.0%
!! TACTTGTTGGCCGTTTTGGG+AGG - chr2_1:66319851-66319870 Msa0218830:three_prime_UTR 50.0%
!! GGATTGGTTGCCTCCCAAAA+CGG + chr2_1:66319864-66319883 None:intergenic 50.0%
CCTTGCCCTTGACTTCACTT+AGG + chr2_1:66320925-66320944 None:intergenic 50.0%
CCTAAGTGAAGTCAAGGGCA+AGG - chr2_1:66320922-66320941 Msa0218830:intron 50.0%
TTTGCCGAGCTTATTGCCAG+TGG - chr2_1:66320947-66320966 Msa0218830:intron 50.0%
! TCTTCCTTTGCTGCTTCAGC+AGG + chr2_1:66321058-66321077 None:intergenic 50.0%
! GAGATCTCGACTTGACGGTA+GGG + chr2_1:66319696-66319715 None:intergenic 50.0%
! TGAGATCTCGACTTGACGGT+AGG + chr2_1:66319697-66319716 None:intergenic 50.0%
!! TACTTGTTGGCCGTTTTGGG+AGG - chr2_1:66319851-66319870 Msa0218830:three_prime_UTR 50.0%
!! GGATTGGTTGCCTCCCAAAA+CGG + chr2_1:66319864-66319883 None:intergenic 50.0%
CCTTGCCCTTGACTTCACTT+AGG + chr2_1:66320925-66320944 None:intergenic 50.0%
CCTAAGTGAAGTCAAGGGCA+AGG - chr2_1:66320922-66320941 Msa0218830:intron 50.0%
TTTGCCGAGCTTATTGCCAG+TGG - chr2_1:66320947-66320966 Msa0218830:intron 50.0%
! TCTTCCTTTGCTGCTTCAGC+AGG + chr2_1:66321058-66321077 None:intergenic 50.0%
GACGGTAGGGTTTCACCAGA+GGG + chr2_1:66319683-66319702 None:intergenic 55.0%
TGACGGTAGGGTTTCACCAG+AGG + chr2_1:66319684-66319703 None:intergenic 55.0%
GATCAGCAGCTGAAGGGGAT+TGG + chr2_1:66319880-66319899 None:intergenic 55.0%
TGTAGTTGGAGTTGAGGCCG+AGG - chr2_1:66320880-66320899 Msa0218830:intron 55.0%
TTGGCTTCAGTTCCATCCGG+TGG - chr2_1:66320980-66320999 Msa0218830:intron 55.0%
GTTGCTGTGTCTGCTGCAAC+TGG - chr2_1:66321010-66321029 Msa0218830:intron 55.0%
TGCACCTGCTGAAGCAGCAA+AGG - chr2_1:66321051-66321070 Msa0218830:intron 55.0%
GACGGTAGGGTTTCACCAGA+GGG + chr2_1:66319683-66319702 None:intergenic 55.0%
TGACGGTAGGGTTTCACCAG+AGG + chr2_1:66319684-66319703 None:intergenic 55.0%
GATCAGCAGCTGAAGGGGAT+TGG + chr2_1:66319880-66319899 None:intergenic 55.0%
TGTAGTTGGAGTTGAGGCCG+AGG - chr2_1:66320880-66320899 Msa0218830:intron 55.0%
TTGGCTTCAGTTCCATCCGG+TGG - chr2_1:66320980-66320999 Msa0218830:intron 55.0%
GTTGCTGTGTCTGCTGCAAC+TGG - chr2_1:66321010-66321029 Msa0218830:intron 55.0%
TGCACCTGCTGAAGCAGCAA+AGG - chr2_1:66321051-66321070 Msa0218830:intron 55.0%
GTTGGAGTTGAGGCCGAGGA+TGG - chr2_1:66320884-66320903 Msa0218830:intron 60.0%
GCTTCAGTTCCATCCGGTGG+TGG - chr2_1:66320983-66321002 Msa0218830:intron 60.0%
CACAGCAACAGCACCACCAC+CGG + chr2_1:66320999-66321018 None:intergenic 60.0%
GCTGTGTCTGCTGCAACTGG+AGG - chr2_1:66321013-66321032 Msa0218830:intron 60.0%
GTGTCTGCTGCAACTGGAGG+AGG - chr2_1:66321016-66321035 Msa0218830:intron 60.0%
GTTGGAGTTGAGGCCGAGGA+TGG - chr2_1:66320884-66320903 Msa0218830:intron 60.0%
GCTTCAGTTCCATCCGGTGG+TGG - chr2_1:66320983-66321002 Msa0218830:intron 60.0%
CACAGCAACAGCACCACCAC+CGG + chr2_1:66320999-66321018 None:intergenic 60.0%
GCTGTGTCTGCTGCAACTGG+AGG - chr2_1:66321013-66321032 Msa0218830:intron 60.0%
GTGTCTGCTGCAACTGGAGG+AGG - chr2_1:66321016-66321035 Msa0218830:intron 60.0%
GCAACAGCACCACCACCGGA+TGG + chr2_1:66320995-66321014 None:intergenic 65.0%
GCAACAGCACCACCACCGGA+TGG + chr2_1:66320995-66321014 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 66319666 66321573 66319666 ID=Msa0218830;Name=Msa0218830
chr2_1 mRNA 66319666 66321573 66319666 ID=Msa0218830-mRNA-1;Parent=Msa0218830;Name=Msa0218830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=70|1|1|1|0.66|0.5|4|348|113
chr2_1 exon 66319666 66320040 66319666 ID=Msa0218830-mRNA-1:exon:18653;Parent=Msa0218830-mRNA-1
chr2_1 exon 66320128 66320354 66320128 ID=Msa0218830-mRNA-1:exon:18652;Parent=Msa0218830-mRNA-1
chr2_1 exon 66321319 66321408 66321319 ID=Msa0218830-mRNA-1:exon:18651;Parent=Msa0218830-mRNA-1
chr2_1 exon 66321506 66321573 66321506 ID=Msa0218830-mRNA-1:exon:18650;Parent=Msa0218830-mRNA-1
chr2_1 five_prime_UTR 66321506 66321573 66321506 ID=Msa0218830-mRNA-1:five_prime_utr;Parent=Msa0218830-mRNA-1
chr2_1 five_prime_UTR 66321407 66321408 66321407 ID=Msa0218830-mRNA-1:five_prime_utr;Parent=Msa0218830-mRNA-1
chr2_1 CDS 66321319 66321406 66321319 ID=Msa0218830-mRNA-1:cds;Parent=Msa0218830-mRNA-1
chr2_1 CDS 66320128 66320354 66320128 ID=Msa0218830-mRNA-1:cds;Parent=Msa0218830-mRNA-1
chr2_1 CDS 66320014 66320040 66320014 ID=Msa0218830-mRNA-1:cds;Parent=Msa0218830-mRNA-1
chr2_1 three_prime_UTR 66319666 66320013 66319666 ID=Msa0218830-mRNA-1:three_prime_utr;Parent=Msa0218830-mRNA-1
Gene Sequence

>Msa0218830

ATGAAGATTATCGCAGCTTACTTGTTGGCCGTTTTGGGAGGCAACCAATCCCCTTCAGCTGCTGATCTTAAACAAATTCTTGGATCAGTTGGAGTTGAGGCCGAGGATGGCAACATTGAGTTGCTCCTAAGTGAAGTCAAGGGCAAGGACTTTGCCGAGCTTATTGCCAGTGGAAGAGAAAAGTTGGCTTCAGTTCCATCCGGTGGTGGTGCTGTTGCTGTGTCTGCTGCAACTGGAGGAGGTGCTGCAGCTGCTGCACCTGCTGAAGCAGCAAAGGAAGAGAAGAAGGTGGAAGAGAAGGAAGAATCCGATGATGATATGGGATTCAGCTTATTTGATTAA

Protein sequence

>Msa0218830

MKIIAAYLLAVLGGNQSPSAADLKQILGSVGVEAEDGNIELLLSEVKGKDFAELIASGREKLASVPSGGGAVAVSAATGGGAAAAAPAEAAKEEKKVEEKEESDDDMGFSLFD*