AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1262890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262890 MtrunA17_Chr4g0065831 86.154 130 0 1 1 112 1 130 5.31e-75 218
Msa1262890 MtrunA17_Chr4g0051921 85.385 130 1 1 1 112 1 130 1.51e-74 216
Msa1262890 MtrunA17_Chr1g0205971 85.385 130 1 1 1 112 1 130 1.51e-74 216
Msa1262890 MtrunA17_Chr8g0389371 46.400 125 49 1 6 112 5 129 1.48e-36 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262890 AT5G59850.1 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa1262890 AT1G07770.2 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa1262890 AT1G07770.3 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa1262890 AT1G07770.1 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa1262890 AT3G46040.1 83.846 130 3 1 1 112 1 130 2.86e-73 214
Msa1262890 AT2G39590.1 79.231 130 9 1 1 112 1 130 4.28e-69 203
Msa1262890 AT4G29430.1 45.600 125 50 1 6 112 5 129 8.11e-35 116
Msa1262890 AT2G19720.1 46.400 125 49 1 6 112 5 129 1.19e-34 116

Find 61 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAATTGACCCCATGAATT+TGG 0.119068 8_2:-65859591 Msa1262890:three_prime_UTR
GACCACTTCTGCTGGTATTA+TGG 0.215449 8_2:-65860023 Msa1262890:CDS
CTTCGACGGCGACGTGTTTC+CGG 0.219090 8_2:-65861649 Msa1262890:five_prime_UTR
TATAGTTCCAAATCCATAAA+AGG 0.241591 8_2:-65859617 Msa1262890:three_prime_UTR
TGTTGAGCACTTTGATTATA+AGG 0.241849 8_2:-65859730 Msa1262890:three_prime_UTR
ACAATTAAGCCAGTACATTT+AGG 0.251416 8_2:+65859759 None:intergenic
GGCACCTTTCTCTTCTCTTT+CGG 0.298506 8_2:-65861628 Msa1262890:intron
TTATGCTTTATAGGTTATAT+TGG 0.301097 8_2:-65861236 Msa1262890:intron
ACTATTCTTGATATTACTAA+TGG 0.327101 8_2:+65859870 None:intergenic
TATGATTAGGCCTTCCTCTA+AGG 0.335085 8_2:-65861438 Msa1262890:CDS
CAATATCATATTCTAATAAC+TGG 0.338860 8_2:+65859674 None:intergenic
TGCTCTTTGTACATGACAAT+TGG 0.352382 8_2:+65859566 None:intergenic
ATAATTGACCCCATGAATTT+GGG 0.365305 8_2:-65859590 Msa1262890:three_prime_UTR
GACAATTGGACCCAAATTCA+TGG 0.397212 8_2:+65859580 None:intergenic
GAATTTGATGATAACCTTAG+AGG 0.407415 8_2:+65861424 None:intergenic
CGATGAAAATGTAAAGAAAT+CGG 0.412135 8_2:+65859784 None:intergenic
CATAGATATTTGAATTGATC+TGG 0.412306 8_2:-65859698 Msa1262890:three_prime_UTR
CAAAGAGCATTTGCAGATGC+AGG 0.442930 8_2:-65859552 Msa1262890:three_prime_UTR
GAAAGCGTCAAGTTATGATT+AGG 0.452540 8_2:-65861451 Msa1262890:CDS
TATGTTGATGATCACAGATC+TGG 0.452973 8_2:-65861203 Msa1262890:CDS
GATGAGACTTATATACTCCT+AGG 0.453293 8_2:+65861721 None:intergenic
GAGCACTTTGATTATAAGGT+TGG 0.453448 8_2:-65859726 Msa1262890:three_prime_UTR
TTAGTAATATCAAGAATAGT+AGG 0.463110 8_2:-65859867 Msa1262890:three_prime_UTR
GGTCCTTGGCTTCTTCTACT+AGG 0.468896 8_2:-65859963 Msa1262890:exon
ATATACTCCTAGGGTTTACA+AGG 0.475391 8_2:+65861731 None:intergenic
TTCATCGTACCTAAATGTAC+TGG 0.482111 8_2:-65859768 Msa1262890:three_prime_UTR
AATGTTGGTGGTAAGGTCCT+TGG 0.482167 8_2:-65859977 Msa1262890:CDS
AAAATCGTTGTTGAATTGAA+TGG 0.485579 8_2:-65861179 Msa1262890:CDS
GAGAAAGAATGTTGGTGGTA+AGG 0.495772 8_2:-65859984 Msa1262890:CDS
ATGGTAGGTTGAACAAATGT+GGG 0.519393 8_2:-65861160 Msa1262890:CDS
ATGAGACTTATATACTCCTA+GGG 0.523557 8_2:+65861722 None:intergenic
TCTGATTTCGATTTCTTCGA+CGG 0.524100 8_2:-65861663 Msa1262890:five_prime_UTR
ATCCATAATACCAGCAGAAG+TGG 0.531152 8_2:+65860021 None:intergenic
ACAATTGGACCCAAATTCAT+GGG 0.538561 8_2:+65859581 None:intergenic
ATGTACAATGCTGAGAAAAG+AGG 0.544704 8_2:-65861473 Msa1262890:CDS
ATAAATTATAGCAACCAACT+AGG 0.562234 8_2:+65859807 None:intergenic
ATGTTGATGATCACAGATCT+GGG 0.565212 8_2:-65861202 Msa1262890:CDS
GCTAGGAGAAAGAATGTTGG+TGG 0.567141 8_2:-65859989 Msa1262890:CDS
GAAAGAGAAGAGAAAGGTGC+CGG 0.572924 8_2:+65861630 None:intergenic
TAGCCTAGTAGAAGAAGCCA+AGG 0.575489 8_2:+65859960 None:intergenic
AATGGTAGGTTGAACAAATG+TGG 0.577364 8_2:-65861161 Msa1262890:CDS
GAGGCTAGGAGAAAGAATGT+TGG 0.584494 8_2:-65859992 Msa1262890:CDS
ACTAGGCTAGTTCCTTGTCG+AGG 0.584561 8_2:-65859946 Msa1262890:exon
TTATGGATCATGAAGAGGCT+AGG 0.585160 8_2:-65860006 Msa1262890:CDS
ATTAGAATATGATATTGCAT+AGG 0.588865 8_2:-65859668 Msa1262890:three_prime_UTR
TCAAAACCCTTGTAAACCCT+AGG 0.597062 8_2:-65861738 Msa1262890:five_prime_UTR
TTTGTGAATCTCAGAAACCA+TGG 0.598315 8_2:-65861531 Msa1262890:intron
TTGATGATAACCTTAGAGGA+AGG 0.606187 8_2:+65861428 None:intergenic
TGGTATTATGGATCATGAAG+AGG 0.606467 8_2:-65860011 Msa1262890:CDS
TCGCTTGCTGGATGTAATGG+TGG 0.613895 8_2:-65859903 Msa1262890:three_prime_UTR
TCGTTGTTGAATTGAATGGT+AGG 0.614641 8_2:-65861175 Msa1262890:CDS
CTTACCGAAAGAGAAGAGAA+AGG 0.616339 8_2:+65861624 None:intergenic
AAAGAGCATTTGCAGATGCA+GGG 0.628128 8_2:-65859551 None:intergenic
CAAAACACTGACTCTCACCA+TGG 0.638914 8_2:+65861514 None:intergenic
TTAACTTGTATGATACTCTG+TGG 0.643313 8_2:+65859645 None:intergenic
GTCGAAGAAATCGAAATCAG+AGG 0.662001 8_2:+65861665 None:intergenic
CAGAGGAAATGAAATCGCGA+CGG 0.678141 8_2:+65861682 None:intergenic
TATACTCCTAGGGTTTACAA+GGG 0.683859 8_2:+65861732 None:intergenic
CAATTGGACCCAAATTCATG+GGG 0.705879 8_2:+65859582 None:intergenic
TGGTAGGTTGAACAAATGTG+GGG 0.708928 8_2:-65861159 Msa1262890:CDS
TTGACACCGACATCAAAACG+AGG 0.734537 8_2:+65861128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTAAATAATAACAATTTA+AGG + chr8_2:65861162-65861181 None:intergenic 10.0%
!! TCTTAAATAATAACAATTTA+AGG + chr8_2:65861162-65861181 None:intergenic 10.0%
!!! TTTGATTTGATATAATTTTG+TGG - chr8_2:65860009-65860028 Msa1262890:CDS 15.0%
!!! TTGATTTGATATAATTTTGT+GGG - chr8_2:65860010-65860029 Msa1262890:CDS 15.0%
!!! TTTTGATTTGATATATTTTG+TGG - chr8_2:65860061-65860080 Msa1262890:intron 15.0%
!!! TTTGATTTGATATATTTTGT+GGG - chr8_2:65860062-65860081 Msa1262890:intron 15.0%
!!! TTGAAAACAATACTAATTTT+TGG - chr8_2:65860264-65860283 Msa1262890:intron 15.0%
!!! TGAAAACAATACTAATTTTT+GGG - chr8_2:65860265-65860284 Msa1262890:intron 15.0%
!!! AACTTAATTTATCTTTTGAT+AGG - chr8_2:65860447-65860466 Msa1262890:intron 15.0%
!! CTAAAATTGATCATAAAAAA+CGG + chr8_2:65861038-65861057 None:intergenic 15.0%
!! TAATTATAAAATATGCAGTT+TGG - chr8_2:65861263-65861282 Msa1262890:intron 15.0%
!!! TTTGATTTGATATAATTTTG+TGG - chr8_2:65860009-65860028 Msa1262890:CDS 15.0%
!!! TTGATTTGATATAATTTTGT+GGG - chr8_2:65860010-65860029 Msa1262890:CDS 15.0%
!!! TTTTGATTTGATATATTTTG+TGG - chr8_2:65860061-65860080 Msa1262890:intron 15.0%
!!! TTTGATTTGATATATTTTGT+GGG - chr8_2:65860062-65860081 Msa1262890:intron 15.0%
!!! TTGAAAACAATACTAATTTT+TGG - chr8_2:65860264-65860283 Msa1262890:intron 15.0%
!!! TGAAAACAATACTAATTTTT+GGG - chr8_2:65860265-65860284 Msa1262890:intron 15.0%
!!! AACTTAATTTATCTTTTGAT+AGG - chr8_2:65860447-65860466 Msa1262890:intron 15.0%
!! CTAAAATTGATCATAAAAAA+CGG + chr8_2:65861038-65861057 None:intergenic 15.0%
!! TAATTATAAAATATGCAGTT+TGG - chr8_2:65861263-65861282 Msa1262890:intron 15.0%
!!! AGGAAAAAAAAAGATTTTAG+AGG + chr8_2:65859954-65859973 None:intergenic 20.0%
!!! TTTTTTTTTCCTTTCATTGA+AGG - chr8_2:65859962-65859981 Msa1262890:exon 20.0%
!! TTGCATGATTCAATTATTTA+GGG - chr8_2:65859985-65860004 Msa1262890:CDS 20.0%
!! TTATGCTTTATAGGTTATAT+TGG - chr8_2:65860085-65860104 Msa1262890:intron 20.0%
!! AAAACTAATAAATGTTGCAT+TGG + chr8_2:65860558-65860577 None:intergenic 20.0%
!!! ATTAAATAAGGGTATAATAG+TGG + chr8_2:65860583-65860602 None:intergenic 20.0%
!! GGATGAAATTCATTAAATAA+GGG + chr8_2:65860594-65860613 None:intergenic 20.0%
!! TGGATGAAATTCATTAAATA+AGG + chr8_2:65860595-65860614 None:intergenic 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG + chr8_2:65860678-65860697 None:intergenic 20.0%
!!! AAAAACGGAGATTTTTTTTT+AGG + chr8_2:65861023-65861042 None:intergenic 20.0%
!! ACTATTCTTGATATTACTAA+TGG + chr8_2:65861454-65861473 None:intergenic 20.0%
!! TTAGTAATATCAAGAATAGT+AGG - chr8_2:65861454-65861473 Msa1262890:CDS 20.0%
!! CAATATCATATTCTAATAAC+TGG + chr8_2:65861650-65861669 None:intergenic 20.0%
!! ATTAGAATATGATATTGCAT+AGG - chr8_2:65861653-65861672 Msa1262890:five_prime_UTR 20.0%
!!! AGGAAAAAAAAAGATTTTAG+AGG + chr8_2:65859954-65859973 None:intergenic 20.0%
!!! TTTTTTTTTCCTTTCATTGA+AGG - chr8_2:65859962-65859981 Msa1262890:exon 20.0%
!! TTGCATGATTCAATTATTTA+GGG - chr8_2:65859985-65860004 Msa1262890:CDS 20.0%
!! TTATGCTTTATAGGTTATAT+TGG - chr8_2:65860085-65860104 Msa1262890:intron 20.0%
!! AAAACTAATAAATGTTGCAT+TGG + chr8_2:65860558-65860577 None:intergenic 20.0%
!!! ATTAAATAAGGGTATAATAG+TGG + chr8_2:65860583-65860602 None:intergenic 20.0%
!! GGATGAAATTCATTAAATAA+GGG + chr8_2:65860594-65860613 None:intergenic 20.0%
!! TGGATGAAATTCATTAAATA+AGG + chr8_2:65860595-65860614 None:intergenic 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG + chr8_2:65860678-65860697 None:intergenic 20.0%
!!! AAAAACGGAGATTTTTTTTT+AGG + chr8_2:65861023-65861042 None:intergenic 20.0%
!! ACTATTCTTGATATTACTAA+TGG + chr8_2:65861454-65861473 None:intergenic 20.0%
!! TTAGTAATATCAAGAATAGT+AGG - chr8_2:65861454-65861473 Msa1262890:CDS 20.0%
!! CAATATCATATTCTAATAAC+TGG + chr8_2:65861650-65861669 None:intergenic 20.0%
!! ATTAGAATATGATATTGCAT+AGG - chr8_2:65861653-65861672 Msa1262890:five_prime_UTR 20.0%
!!! TTTTAAGAAGAAGAAGAAGA+TGG + chr8_2:65859725-65859744 None:intergenic 25.0%
! TAAACAGTGATGAAATGAAA+TGG + chr8_2:65859754-65859773 None:intergenic 25.0%
! ATTTCATTTCATCACTGTTT+AGG - chr8_2:65859753-65859772 Msa1262890:three_prime_UTR 25.0%
! GTTGCATGATTCAATTATTT+AGG - chr8_2:65859984-65860003 Msa1262890:CDS 25.0%
!! TATAATTTTGTGGGTATGTT+TGG - chr8_2:65860019-65860038 Msa1262890:CDS 25.0%
!!! TTTGGTGGTTCAATTTTTTA+GGG - chr8_2:65860037-65860056 Msa1262890:CDS 25.0%
! AAAATCGTTGTTGAATTGAA+TGG - chr8_2:65860142-65860161 Msa1262890:intron 25.0%
!!! TCAGCTTATTTTCATAAACA+TGG - chr8_2:65860398-65860417 Msa1262890:intron 25.0%
!! TGATTTGGAACAAATTTACT+CGG + chr8_2:65860905-65860924 None:intergenic 25.0%
! TCATGCTTCATATTAAAGAT+TGG - chr8_2:65860932-65860951 Msa1262890:intron 25.0%
! TATAGTTTCTTACTCCTATT+TGG - chr8_2:65860968-65860987 Msa1262890:intron 25.0%
! TATTGAACTTATATGAACGT+TGG - chr8_2:65861187-65861206 Msa1262890:CDS 25.0%
! ATTGAACTTATATGAACGTT+GGG - chr8_2:65861188-65861207 Msa1262890:CDS 25.0%
!!! TTTGTTTTACAAAACCTAGT+TGG - chr8_2:65861500-65861519 Msa1262890:CDS 25.0%
! ATAAATTATAGCAACCAACT+AGG + chr8_2:65861517-65861536 None:intergenic 25.0%
! CGATGAAAATGTAAAGAAAT+CGG + chr8_2:65861540-65861559 None:intergenic 25.0%
! CATAGATATTTGAATTGATC+TGG - chr8_2:65861623-65861642 Msa1262890:intron 25.0%
! TATAGTTCCAAATCCATAAA+AGG - chr8_2:65861704-65861723 Msa1262890:five_prime_UTR 25.0%
!! TATCAATCCTTTTATGGATT+TGG + chr8_2:65861714-65861733 None:intergenic 25.0%
!! GTCAATTATCAATCCTTTTA+TGG + chr8_2:65861720-65861739 None:intergenic 25.0%
!!! TTTTAAGAAGAAGAAGAAGA+TGG + chr8_2:65859725-65859744 None:intergenic 25.0%
! TAAACAGTGATGAAATGAAA+TGG + chr8_2:65859754-65859773 None:intergenic 25.0%
! ATTTCATTTCATCACTGTTT+AGG - chr8_2:65859753-65859772 Msa1262890:three_prime_UTR 25.0%
! GTTGCATGATTCAATTATTT+AGG - chr8_2:65859984-65860003 Msa1262890:CDS 25.0%
!! TATAATTTTGTGGGTATGTT+TGG - chr8_2:65860019-65860038 Msa1262890:CDS 25.0%
!!! TTTGGTGGTTCAATTTTTTA+GGG - chr8_2:65860037-65860056 Msa1262890:CDS 25.0%
! AAAATCGTTGTTGAATTGAA+TGG - chr8_2:65860142-65860161 Msa1262890:intron 25.0%
!!! TCAGCTTATTTTCATAAACA+TGG - chr8_2:65860398-65860417 Msa1262890:intron 25.0%
!! TGATTTGGAACAAATTTACT+CGG + chr8_2:65860905-65860924 None:intergenic 25.0%
! TCATGCTTCATATTAAAGAT+TGG - chr8_2:65860932-65860951 Msa1262890:intron 25.0%
! TATAGTTTCTTACTCCTATT+TGG - chr8_2:65860968-65860987 Msa1262890:intron 25.0%
! TATTGAACTTATATGAACGT+TGG - chr8_2:65861187-65861206 Msa1262890:CDS 25.0%
! ATTGAACTTATATGAACGTT+GGG - chr8_2:65861188-65861207 Msa1262890:CDS 25.0%
!!! TTTGTTTTACAAAACCTAGT+TGG - chr8_2:65861500-65861519 Msa1262890:CDS 25.0%
! ATAAATTATAGCAACCAACT+AGG + chr8_2:65861517-65861536 None:intergenic 25.0%
! CGATGAAAATGTAAAGAAAT+CGG + chr8_2:65861540-65861559 None:intergenic 25.0%
! CATAGATATTTGAATTGATC+TGG - chr8_2:65861623-65861642 Msa1262890:intron 25.0%
! TATAGTTCCAAATCCATAAA+AGG - chr8_2:65861704-65861723 Msa1262890:five_prime_UTR 25.0%
!! TATCAATCCTTTTATGGATT+TGG + chr8_2:65861714-65861733 None:intergenic 25.0%
!! GTCAATTATCAATCCTTTTA+TGG + chr8_2:65861720-65861739 None:intergenic 25.0%
ATGAGACTTATATACTCCTA+GGG + chr8_2:65859602-65859621 None:intergenic 30.0%
! GAATTTGATGATAACCTTAG+AGG + chr8_2:65859900-65859919 None:intergenic 30.0%
!!! GTTTGGTGGTTCAATTTTTT+AGG - chr8_2:65860036-65860055 Msa1262890:CDS 30.0%
!! TTTTGTGGGTTATGCTTTAT+AGG - chr8_2:65860076-65860095 Msa1262890:intron 30.0%
TTTGGGAGAACTTATGAAAA+CGG - chr8_2:65860350-65860369 Msa1262890:intron 30.0%
TCCACCAACTACAATTAATA+AGG - chr8_2:65860625-65860644 Msa1262890:intron 30.0%
CCACCAACTACAATTAATAA+GGG - chr8_2:65860626-65860645 Msa1262890:intron 30.0%
ACACCCTTATTAATTGTAGT+TGG + chr8_2:65860632-65860651 None:intergenic 30.0%
CTCACAATATTAGTCGTTTA+AGG + chr8_2:65860726-65860745 None:intergenic 30.0%
AAACGACTAATATTGTGAGA+CGG - chr8_2:65860727-65860746 Msa1262890:intron 30.0%
CATAGCTATATGTAAGAACA+TGG + chr8_2:65860793-65860812 None:intergenic 30.0%
AAGTTCACACAAATATGCAT+TGG + chr8_2:65860832-65860851 None:intergenic 30.0%
ATTTACTCGGCTTAACAAAA+TGG + chr8_2:65860892-65860911 None:intergenic 30.0%
AAGCATGAACTATCATGATT+TGG + chr8_2:65860920-65860939 None:intergenic 30.0%
AAACAACACATACACACAAA+AGG + chr8_2:65861219-65861238 None:intergenic 30.0%
ACAATTAAGCCAGTACATTT+AGG + chr8_2:65861565-65861584 None:intergenic 30.0%
TGTTGAGCACTTTGATTATA+AGG - chr8_2:65861591-65861610 Msa1262890:intron 30.0%
!! TTAACTTGTATGATACTCTG+TGG + chr8_2:65861679-65861698 None:intergenic 30.0%
ATAATTGACCCCATGAATTT+GGG - chr8_2:65861731-65861750 Msa1262890:five_prime_UTR 30.0%
ATGAGACTTATATACTCCTA+GGG + chr8_2:65859602-65859621 None:intergenic 30.0%
! GAATTTGATGATAACCTTAG+AGG + chr8_2:65859900-65859919 None:intergenic 30.0%
!!! GTTTGGTGGTTCAATTTTTT+AGG - chr8_2:65860036-65860055 Msa1262890:CDS 30.0%
!! TTTTGTGGGTTATGCTTTAT+AGG - chr8_2:65860076-65860095 Msa1262890:intron 30.0%
TTTGGGAGAACTTATGAAAA+CGG - chr8_2:65860350-65860369 Msa1262890:intron 30.0%
TCCACCAACTACAATTAATA+AGG - chr8_2:65860625-65860644 Msa1262890:intron 30.0%
CCACCAACTACAATTAATAA+GGG - chr8_2:65860626-65860645 Msa1262890:intron 30.0%
ACACCCTTATTAATTGTAGT+TGG + chr8_2:65860632-65860651 None:intergenic 30.0%
CTCACAATATTAGTCGTTTA+AGG + chr8_2:65860726-65860745 None:intergenic 30.0%
AAACGACTAATATTGTGAGA+CGG - chr8_2:65860727-65860746 Msa1262890:intron 30.0%
CATAGCTATATGTAAGAACA+TGG + chr8_2:65860793-65860812 None:intergenic 30.0%
AAGTTCACACAAATATGCAT+TGG + chr8_2:65860832-65860851 None:intergenic 30.0%
ATTTACTCGGCTTAACAAAA+TGG + chr8_2:65860892-65860911 None:intergenic 30.0%
AAGCATGAACTATCATGATT+TGG + chr8_2:65860920-65860939 None:intergenic 30.0%
AAACAACACATACACACAAA+AGG + chr8_2:65861219-65861238 None:intergenic 30.0%
ACAATTAAGCCAGTACATTT+AGG + chr8_2:65861565-65861584 None:intergenic 30.0%
TGTTGAGCACTTTGATTATA+AGG - chr8_2:65861591-65861610 Msa1262890:intron 30.0%
!! TTAACTTGTATGATACTCTG+TGG + chr8_2:65861679-65861698 None:intergenic 30.0%
ATAATTGACCCCATGAATTT+GGG - chr8_2:65861731-65861750 Msa1262890:five_prime_UTR 30.0%
TATACTCCTAGGGTTTACAA+GGG + chr8_2:65859592-65859611 None:intergenic 35.0%
ATATACTCCTAGGGTTTACA+AGG + chr8_2:65859593-65859612 None:intergenic 35.0%
GATGAGACTTATATACTCCT+AGG + chr8_2:65859603-65859622 None:intergenic 35.0%
TCTGATTTCGATTTCTTCGA+CGG - chr8_2:65859658-65859677 Msa1262890:three_prime_UTR 35.0%
TTTGTGAATCTCAGAAACCA+TGG - chr8_2:65859790-65859809 Msa1262890:three_prime_UTR 35.0%
ATGTACAATGCTGAGAAAAG+AGG - chr8_2:65859848-65859867 Msa1262890:three_prime_UTR 35.0%
!! GAAAGCGTCAAGTTATGATT+AGG - chr8_2:65859870-65859889 Msa1262890:three_prime_UTR 35.0%
! TTGATGATAACCTTAGAGGA+AGG + chr8_2:65859896-65859915 None:intergenic 35.0%
CTCATCGTTATGCAAAAACA+CGG - chr8_2:65859920-65859939 Msa1262890:three_prime_UTR 35.0%
ATCATGCAACCTTCAATGAA+AGG + chr8_2:65859974-65859993 None:intergenic 35.0%
! AATTTTGTGGGTATGTTTGG+TGG - chr8_2:65860022-65860041 Msa1262890:CDS 35.0%
!! TATGTTGATGATCACAGATC+TGG - chr8_2:65860118-65860137 Msa1262890:intron 35.0%
!! ATGTTGATGATCACAGATCT+GGG - chr8_2:65860119-65860138 Msa1262890:intron 35.0%
TCGTTGTTGAATTGAATGGT+AGG - chr8_2:65860146-65860165 Msa1262890:intron 35.0%
! AATGGTAGGTTGAACAAATG+TGG - chr8_2:65860160-65860179 Msa1262890:intron 35.0%
! ATGGTAGGTTGAACAAATGT+GGG - chr8_2:65860161-65860180 Msa1262890:intron 35.0%
!! ATTAGTCCTCGTTTTGATGT+CGG - chr8_2:65860187-65860206 Msa1262890:intron 35.0%
TTATCACCTGTGAGAATGTT+TGG - chr8_2:65860332-65860351 Msa1262890:intron 35.0%
TATCACCTGTGAGAATGTTT+GGG - chr8_2:65860333-65860352 Msa1262890:intron 35.0%
GACAATAATTGTGAGACAGA+GGG + chr8_2:65860488-65860507 None:intergenic 35.0%
AGACAATAATTGTGAGACAG+AGG + chr8_2:65860489-65860508 None:intergenic 35.0%
CCCTTATTAATTGTAGTTGG+TGG + chr8_2:65860629-65860648 None:intergenic 35.0%
AGGTTTGTGCACGATTATTA+AGG + chr8_2:65860706-65860725 None:intergenic 35.0%
AGTAAGCTGTTTATCCAAAC+AGG - chr8_2:65860766-65860785 Msa1262890:intron 35.0%
ACACAAATATGCATTGGAAG+TGG + chr8_2:65860826-65860845 None:intergenic 35.0%
! TTACTCCTATTTGGTCTTTG+TGG - chr8_2:65860977-65860996 Msa1262890:intron 35.0%
TTGTTCCACAAAGACCAAAT+AGG + chr8_2:65860985-65861004 None:intergenic 35.0%
!! TCAATTTTAGCCTCTACTAG+AGG - chr8_2:65861048-65861067 Msa1262890:intron 35.0%
!! TCTGTCAACAATTTGTTGCT+TGG - chr8_2:65861100-65861119 Msa1262890:intron 35.0%
! ATTTGTTGCTTGGATGATCT+AGG - chr8_2:65861110-65861129 Msa1262890:intron 35.0%
TGGTATTATGGATCATGAAG+AGG - chr8_2:65861310-65861329 Msa1262890:intron 35.0%
AATCTCAAAAATCCTCGACA+AGG + chr8_2:65861390-65861409 None:intergenic 35.0%
TTCATCGTACCTAAATGTAC+TGG - chr8_2:65861553-65861572 Msa1262890:intron 35.0%
GAGCACTTTGATTATAAGGT+TGG - chr8_2:65861595-65861614 Msa1262890:intron 35.0%
GATAATTGACCCCATGAATT+TGG - chr8_2:65861730-65861749 Msa1262890:five_prime_UTR 35.0%
ACAATTGGACCCAAATTCAT+GGG + chr8_2:65861743-65861762 None:intergenic 35.0%
TGCTCTTTGTACATGACAAT+TGG + chr8_2:65861758-65861777 None:intergenic 35.0%
TATACTCCTAGGGTTTACAA+GGG + chr8_2:65859592-65859611 None:intergenic 35.0%
ATATACTCCTAGGGTTTACA+AGG + chr8_2:65859593-65859612 None:intergenic 35.0%
GATGAGACTTATATACTCCT+AGG + chr8_2:65859603-65859622 None:intergenic 35.0%
TCTGATTTCGATTTCTTCGA+CGG - chr8_2:65859658-65859677 Msa1262890:three_prime_UTR 35.0%
TTTGTGAATCTCAGAAACCA+TGG - chr8_2:65859790-65859809 Msa1262890:three_prime_UTR 35.0%
ATGTACAATGCTGAGAAAAG+AGG - chr8_2:65859848-65859867 Msa1262890:three_prime_UTR 35.0%
!! GAAAGCGTCAAGTTATGATT+AGG - chr8_2:65859870-65859889 Msa1262890:three_prime_UTR 35.0%
! TTGATGATAACCTTAGAGGA+AGG + chr8_2:65859896-65859915 None:intergenic 35.0%
CTCATCGTTATGCAAAAACA+CGG - chr8_2:65859920-65859939 Msa1262890:three_prime_UTR 35.0%
ATCATGCAACCTTCAATGAA+AGG + chr8_2:65859974-65859993 None:intergenic 35.0%
! AATTTTGTGGGTATGTTTGG+TGG - chr8_2:65860022-65860041 Msa1262890:CDS 35.0%
!! TATGTTGATGATCACAGATC+TGG - chr8_2:65860118-65860137 Msa1262890:intron 35.0%
!! ATGTTGATGATCACAGATCT+GGG - chr8_2:65860119-65860138 Msa1262890:intron 35.0%
TCGTTGTTGAATTGAATGGT+AGG - chr8_2:65860146-65860165 Msa1262890:intron 35.0%
! AATGGTAGGTTGAACAAATG+TGG - chr8_2:65860160-65860179 Msa1262890:intron 35.0%
! ATGGTAGGTTGAACAAATGT+GGG - chr8_2:65860161-65860180 Msa1262890:intron 35.0%
!! ATTAGTCCTCGTTTTGATGT+CGG - chr8_2:65860187-65860206 Msa1262890:intron 35.0%
TTATCACCTGTGAGAATGTT+TGG - chr8_2:65860332-65860351 Msa1262890:intron 35.0%
TATCACCTGTGAGAATGTTT+GGG - chr8_2:65860333-65860352 Msa1262890:intron 35.0%
GACAATAATTGTGAGACAGA+GGG + chr8_2:65860488-65860507 None:intergenic 35.0%
AGACAATAATTGTGAGACAG+AGG + chr8_2:65860489-65860508 None:intergenic 35.0%
CCCTTATTAATTGTAGTTGG+TGG + chr8_2:65860629-65860648 None:intergenic 35.0%
AGGTTTGTGCACGATTATTA+AGG + chr8_2:65860706-65860725 None:intergenic 35.0%
AGTAAGCTGTTTATCCAAAC+AGG - chr8_2:65860766-65860785 Msa1262890:intron 35.0%
ACACAAATATGCATTGGAAG+TGG + chr8_2:65860826-65860845 None:intergenic 35.0%
! TTACTCCTATTTGGTCTTTG+TGG - chr8_2:65860977-65860996 Msa1262890:intron 35.0%
TTGTTCCACAAAGACCAAAT+AGG + chr8_2:65860985-65861004 None:intergenic 35.0%
!! TCAATTTTAGCCTCTACTAG+AGG - chr8_2:65861048-65861067 Msa1262890:intron 35.0%
!! TCTGTCAACAATTTGTTGCT+TGG - chr8_2:65861100-65861119 Msa1262890:intron 35.0%
! ATTTGTTGCTTGGATGATCT+AGG - chr8_2:65861110-65861129 Msa1262890:intron 35.0%
TGGTATTATGGATCATGAAG+AGG - chr8_2:65861310-65861329 Msa1262890:intron 35.0%
AATCTCAAAAATCCTCGACA+AGG + chr8_2:65861390-65861409 None:intergenic 35.0%
TTCATCGTACCTAAATGTAC+TGG - chr8_2:65861553-65861572 Msa1262890:intron 35.0%
GAGCACTTTGATTATAAGGT+TGG - chr8_2:65861595-65861614 Msa1262890:intron 35.0%
GATAATTGACCCCATGAATT+TGG - chr8_2:65861730-65861749 Msa1262890:five_prime_UTR 35.0%
ACAATTGGACCCAAATTCAT+GGG + chr8_2:65861743-65861762 None:intergenic 35.0%
TGCTCTTTGTACATGACAAT+TGG + chr8_2:65861758-65861777 None:intergenic 35.0%
TCAAAACCCTTGTAAACCCT+AGG - chr8_2:65859583-65859602 Msa1262890:three_prime_UTR 40.0%
GTCGAAGAAATCGAAATCAG+AGG + chr8_2:65859659-65859678 None:intergenic 40.0%
CTTACCGAAAGAGAAGAGAA+AGG + chr8_2:65859700-65859719 None:intergenic 40.0%
TATGATTAGGCCTTCCTCTA+AGG - chr8_2:65859883-65859902 Msa1262890:three_prime_UTR 40.0%
!! CGTGTTTTTGCATAACGATG+AGG + chr8_2:65859922-65859941 None:intergenic 40.0%
! TGGTAGGTTGAACAAATGTG+GGG - chr8_2:65860162-65860181 Msa1262890:intron 40.0%
! TTGTTTTCAACTGACCTGTC+TGG + chr8_2:65860254-65860273 None:intergenic 40.0%
! TTCTTTTGCATAGTGTCTGC+TGG - chr8_2:65860292-65860311 Msa1262890:intron 40.0%
!! AGTTGGTGGAGTAGTTAAGT+TGG + chr8_2:65860615-65860634 None:intergenic 40.0%
GACTAATATTGTGAGACGGA+GGG - chr8_2:65860731-65860750 Msa1262890:intron 40.0%
TGTAAGAACATGGTCCTGTT+TGG + chr8_2:65860783-65860802 None:intergenic 40.0%
! CTTCAGTGTTATCGATTGCA+TGG - chr8_2:65860863-65860882 Msa1262890:intron 40.0%
CACATAAAAGCCTCTAGTAG+AGG + chr8_2:65861061-65861080 None:intergenic 40.0%
! CTACTAGAGGCTTTTATGTG+TGG - chr8_2:65861061-65861080 Msa1262890:intron 40.0%
!!! ATTGTTTTGACCACTTCTGC+TGG - chr8_2:65861290-65861309 Msa1262890:intron 40.0%
ATCCATAATACCAGCAGAAG+TGG + chr8_2:65861303-65861322 None:intergenic 40.0%
TTATGGATCATGAAGAGGCT+AGG - chr8_2:65861315-65861334 Msa1262890:intron 40.0%
!! GAGAAAGAATGTTGGTGGTA+AGG - chr8_2:65861337-65861356 Msa1262890:intron 40.0%
! GATTTCAGTTTTTCGCTTGC+TGG - chr8_2:65861406-65861425 Msa1262890:CDS 40.0%
!! TTTTCGCTTGCTGGATGTAA+TGG - chr8_2:65861415-65861434 Msa1262890:CDS 40.0%
CAATTGGACCCAAATTCATG+GGG + chr8_2:65861742-65861761 None:intergenic 40.0%
GACAATTGGACCCAAATTCA+TGG + chr8_2:65861744-65861763 None:intergenic 40.0%
TCAAAACCCTTGTAAACCCT+AGG - chr8_2:65859583-65859602 Msa1262890:three_prime_UTR 40.0%
GTCGAAGAAATCGAAATCAG+AGG + chr8_2:65859659-65859678 None:intergenic 40.0%
CTTACCGAAAGAGAAGAGAA+AGG + chr8_2:65859700-65859719 None:intergenic 40.0%
TATGATTAGGCCTTCCTCTA+AGG - chr8_2:65859883-65859902 Msa1262890:three_prime_UTR 40.0%
!! CGTGTTTTTGCATAACGATG+AGG + chr8_2:65859922-65859941 None:intergenic 40.0%
! TGGTAGGTTGAACAAATGTG+GGG - chr8_2:65860162-65860181 Msa1262890:intron 40.0%
! TTGTTTTCAACTGACCTGTC+TGG + chr8_2:65860254-65860273 None:intergenic 40.0%
! TTCTTTTGCATAGTGTCTGC+TGG - chr8_2:65860292-65860311 Msa1262890:intron 40.0%
!! AGTTGGTGGAGTAGTTAAGT+TGG + chr8_2:65860615-65860634 None:intergenic 40.0%
GACTAATATTGTGAGACGGA+GGG - chr8_2:65860731-65860750 Msa1262890:intron 40.0%
TGTAAGAACATGGTCCTGTT+TGG + chr8_2:65860783-65860802 None:intergenic 40.0%
! CTTCAGTGTTATCGATTGCA+TGG - chr8_2:65860863-65860882 Msa1262890:intron 40.0%
CACATAAAAGCCTCTAGTAG+AGG + chr8_2:65861061-65861080 None:intergenic 40.0%
! CTACTAGAGGCTTTTATGTG+TGG - chr8_2:65861061-65861080 Msa1262890:intron 40.0%
!!! ATTGTTTTGACCACTTCTGC+TGG - chr8_2:65861290-65861309 Msa1262890:intron 40.0%
ATCCATAATACCAGCAGAAG+TGG + chr8_2:65861303-65861322 None:intergenic 40.0%
TTATGGATCATGAAGAGGCT+AGG - chr8_2:65861315-65861334 Msa1262890:intron 40.0%
!! GAGAAAGAATGTTGGTGGTA+AGG - chr8_2:65861337-65861356 Msa1262890:intron 40.0%
! GATTTCAGTTTTTCGCTTGC+TGG - chr8_2:65861406-65861425 Msa1262890:CDS 40.0%
!! TTTTCGCTTGCTGGATGTAA+TGG - chr8_2:65861415-65861434 Msa1262890:CDS 40.0%
CAATTGGACCCAAATTCATG+GGG + chr8_2:65861742-65861761 None:intergenic 40.0%
GACAATTGGACCCAAATTCA+TGG + chr8_2:65861744-65861763 None:intergenic 40.0%
CAGAGGAAATGAAATCGCGA+CGG + chr8_2:65859642-65859661 None:intergenic 45.0%
! GAAAGAGAAGAGAAAGGTGC+CGG + chr8_2:65859694-65859713 None:intergenic 45.0%
GGCACCTTTCTCTTCTCTTT+CGG - chr8_2:65859693-65859712 Msa1262890:three_prime_UTR 45.0%
!! CAAAACACTGACTCTCACCA+TGG + chr8_2:65859810-65859829 None:intergenic 45.0%
TTGACACCGACATCAAAACG+AGG + chr8_2:65860196-65860215 None:intergenic 45.0%
!!! TCGTTTTGATGTCGGTGTCA+AGG - chr8_2:65860195-65860214 Msa1262890:intron 45.0%
GTGTCAAGGAGATTGAAGGT+TGG - chr8_2:65860209-65860228 Msa1262890:intron 45.0%
TTCAACTGACCTGTCTGGAA+GGG + chr8_2:65860249-65860268 None:intergenic 45.0%
TTTCAACTGACCTGTCTGGA+AGG + chr8_2:65860250-65860269 None:intergenic 45.0%
GTTCTCCCAAACATTCTCAC+AGG + chr8_2:65860341-65860360 None:intergenic 45.0%
CGACTAATATTGTGAGACGG+AGG - chr8_2:65860730-65860749 Msa1262890:intron 45.0%
GACCACTTCTGCTGGTATTA+TGG - chr8_2:65861298-65861317 Msa1262890:intron 45.0%
GAGGCTAGGAGAAAGAATGT+TGG - chr8_2:65861329-65861348 Msa1262890:intron 45.0%
GCTAGGAGAAAGAATGTTGG+TGG - chr8_2:65861332-65861351 Msa1262890:intron 45.0%
!! AATGTTGGTGGTAAGGTCCT+TGG - chr8_2:65861344-65861363 Msa1262890:intron 45.0%
TAGCCTAGTAGAAGAAGCCA+AGG + chr8_2:65861364-65861383 None:intergenic 45.0%
!! CAAAGAGCATTTGCAGATGC+AGG - chr8_2:65861769-65861788 Msa1262890:five_prime_UTR 45.0%
CAGAGGAAATGAAATCGCGA+CGG + chr8_2:65859642-65859661 None:intergenic 45.0%
! GAAAGAGAAGAGAAAGGTGC+CGG + chr8_2:65859694-65859713 None:intergenic 45.0%
GGCACCTTTCTCTTCTCTTT+CGG - chr8_2:65859693-65859712 Msa1262890:three_prime_UTR 45.0%
!! CAAAACACTGACTCTCACCA+TGG + chr8_2:65859810-65859829 None:intergenic 45.0%
TTGACACCGACATCAAAACG+AGG + chr8_2:65860196-65860215 None:intergenic 45.0%
!!! TCGTTTTGATGTCGGTGTCA+AGG - chr8_2:65860195-65860214 Msa1262890:intron 45.0%
GTGTCAAGGAGATTGAAGGT+TGG - chr8_2:65860209-65860228 Msa1262890:intron 45.0%
TTCAACTGACCTGTCTGGAA+GGG + chr8_2:65860249-65860268 None:intergenic 45.0%
TTTCAACTGACCTGTCTGGA+AGG + chr8_2:65860250-65860269 None:intergenic 45.0%
GTTCTCCCAAACATTCTCAC+AGG + chr8_2:65860341-65860360 None:intergenic 45.0%
CGACTAATATTGTGAGACGG+AGG - chr8_2:65860730-65860749 Msa1262890:intron 45.0%
GACCACTTCTGCTGGTATTA+TGG - chr8_2:65861298-65861317 Msa1262890:intron 45.0%
GAGGCTAGGAGAAAGAATGT+TGG - chr8_2:65861329-65861348 Msa1262890:intron 45.0%
GCTAGGAGAAAGAATGTTGG+TGG - chr8_2:65861332-65861351 Msa1262890:intron 45.0%
!! AATGTTGGTGGTAAGGTCCT+TGG - chr8_2:65861344-65861363 Msa1262890:intron 45.0%
TAGCCTAGTAGAAGAAGCCA+AGG + chr8_2:65861364-65861383 None:intergenic 45.0%
!! TTATAATTATAAAAATGTAA+GGG + chr8_2:65861252-65861271 None:intergenic 5.0%
!! TTTATAATTATAAAAATGTA+AGG + chr8_2:65861253-65861272 None:intergenic 5.0%
!! TTATAATTATAAAAATGTAA+GGG + chr8_2:65861252-65861271 None:intergenic 5.0%
!! TTTATAATTATAAAAATGTA+AGG + chr8_2:65861253-65861272 None:intergenic 5.0%
!! GTCGGTGTCAAGGAGATTGA+AGG - chr8_2:65860205-65860224 Msa1262890:intron 50.0%
TAGACTTCTCCCTTCCAGAC+AGG - chr8_2:65860237-65860256 Msa1262890:intron 50.0%
GGTCCTTGGCTTCTTCTACT+AGG - chr8_2:65861358-65861377 Msa1262890:intron 50.0%
! ACTAGGCTAGTTCCTTGTCG+AGG - chr8_2:65861375-65861394 Msa1262890:intron 50.0%
! TCGCTTGCTGGATGTAATGG+TGG - chr8_2:65861418-65861437 Msa1262890:CDS 50.0%
!! GTCGGTGTCAAGGAGATTGA+AGG - chr8_2:65860205-65860224 Msa1262890:intron 50.0%
TAGACTTCTCCCTTCCAGAC+AGG - chr8_2:65860237-65860256 Msa1262890:intron 50.0%
GGTCCTTGGCTTCTTCTACT+AGG - chr8_2:65861358-65861377 Msa1262890:intron 50.0%
! ACTAGGCTAGTTCCTTGTCG+AGG - chr8_2:65861375-65861394 Msa1262890:intron 50.0%
! TCGCTTGCTGGATGTAATGG+TGG - chr8_2:65861418-65861437 Msa1262890:CDS 50.0%
CTTCGACGGCGACGTGTTTC+CGG - chr8_2:65859672-65859691 Msa1262890:three_prime_UTR 60.0%
CTTCGACGGCGACGTGTTTC+CGG - chr8_2:65859672-65859691 Msa1262890:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 65859552 65861791 65859552 ID=Msa1262890;Name=Msa1262890
chr8_2 mRNA 65859552 65861791 65859552 ID=Msa1262890-mRNA-1;Parent=Msa1262890;Name=Msa1262890-mRNA-1;_AED=0.09;_eAED=0.09;_QI=168|0.66|0.75|1|0.66|0.75|4|412|112
chr8_2 exon 65859552 65860062 65859552 ID=Msa1262890-mRNA-1:exon:21436;Parent=Msa1262890-mRNA-1
chr8_2 exon 65861139 65861245 65861139 ID=Msa1262890-mRNA-1:exon:21435;Parent=Msa1262890-mRNA-1
chr8_2 exon 65861402 65861539 65861402 ID=Msa1262890-mRNA-1:exon:21434;Parent=Msa1262890-mRNA-1
chr8_2 exon 65861629 65861791 65861629 ID=Msa1262890-mRNA-1:exon:21433;Parent=Msa1262890-mRNA-1
chr8_2 five_prime_UTR 65861629 65861791 65861629 ID=Msa1262890-mRNA-1:five_prime_utr;Parent=Msa1262890-mRNA-1
chr8_2 five_prime_UTR 65861535 65861539 65861535 ID=Msa1262890-mRNA-1:five_prime_utr;Parent=Msa1262890-mRNA-1
chr8_2 CDS 65861402 65861534 65861402 ID=Msa1262890-mRNA-1:cds;Parent=Msa1262890-mRNA-1
chr8_2 CDS 65861139 65861245 65861139 ID=Msa1262890-mRNA-1:cds;Parent=Msa1262890-mRNA-1
chr8_2 CDS 65859964 65860062 65859964 ID=Msa1262890-mRNA-1:cds;Parent=Msa1262890-mRNA-1
chr8_2 three_prime_UTR 65859552 65859963 65859552 ID=Msa1262890-mRNA-1:three_prime_utr;Parent=Msa1262890-mRNA-1
Gene Sequence

>Msa1262890

ATGGTGAGAGTCAGTGTTTTGAACGATGCTCTTAAGAGTATGTACAATGCTGAGAAAAGAGGAAAGCGTCAAGTTATGATTAGGCCTTCCTCTAAGGTTATCATCAAATTCCTCATCGTTATGCAAAAACACGGTTATATTGGAGAGTTTGAGTATGTTGATGATCACAGATCTGGGAAAATCGTTGTTGAATTGAATGGTAGGTTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATTTTGGATACATTGTTTTGACCACTTCTGCTGGTATTATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAGGTCCTTGGCTTCTTCTACTAG

Protein sequence

>Msa1262890

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*