AlfalfaGEDB | Msa1237740

M. sativa cultivar zhongmu-4 / Msa1237740

KEGG: K15398
GO: GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016713 GO:0018685 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0055114 GO:0071704
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1237740	XP_003627566.1	99.444	540	3	0	1	540	1	540	0.0	1112

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1237740	sp\|O80823\|C86A8_ARATH	76.481	540	120	3	1	539	1	534	0.0	859

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1237740	G7LBQ4	99.444	540	3	0	1	540	1	540	0.0	1112

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0527820	Msa1237740	0.816055	6.733846e-52	-8.615850e-47
Msa0586220	Msa1237740	0.803343	3.647937e-49	-8.615850e-47
Msa0664090	Msa1237740	0.804571	2.026248e-49	-8.615850e-47
Msa0881090	Msa1237740	0.821320	4.299231e-53	-8.615850e-47
Msa1042160	Msa1237740	0.802221	6.219502e-49	-8.615850e-47
Msa1085330	Msa1237740	0.804245	2.370037e-49	-8.615850e-47
Msa1177950	Msa1237740	0.911456	5.957978e-83	-8.615850e-47
Msa1217210	Msa1237740	0.822529	2.256433e-53	-8.615850e-47
Msa1222350	Msa1237740	0.819894	9.139860e-53	-8.615850e-47
Msa1237740	Msa1318170	0.928961	1.375237e-92	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1237740	MtrunA17_Chr8g0348751	99.444	540	3	0	1	540	1	540	0.0	1112
Msa1237740	MtrunA17_Chr8g0387001	76.245	522	119	2	1	522	1	517	0.0	838
Msa1237740	MtrunA17_Chr5g0429651	62.500	504	172	4	16	512	17	510	0.0	654
Msa1237740	MtrunA17_Chr3g0104351	63.095	504	167	6	19	513	26	519	0.0	647
Msa1237740	MtrunA17_Chr4g0038271	46.911	518	259	8	1	511	53	561	4.64e-158	462
Msa1237740	MtrunA17_Chr1g0164321	47.177	496	247	8	24	510	58	547	2.75e-152	447
Msa1237740	MtrunA17_Chr4g0067191	39.544	526	281	11	7	510	5	515	2.74e-126	379
Msa1237740	MtrunA17_Chr7g0255131	42.136	515	267	13	5	507	10	505	4.41e-119	360
Msa1237740	MtrunA17_Chr7g0227281	40.000	480	272	8	33	512	33	496	3.13e-118	358
Msa1237740	MtrunA17_Chr7g0260831	38.980	490	264	10	30	510	39	502	2.06e-117	356

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1237740	AT2G45970.1	76.481	540	120	3	1	539	1	534	0.0	859
Msa1237740	AT4G00360.1	74.444	540	134	3	1	539	1	537	0.0	846
Msa1237740	AT1G01600.1	74.354	542	131	4	1	539	1	537	0.0	845
Msa1237740	AT1G63710.1	71.947	524	140	3	1	522	1	519	0.0	797
Msa1237740	AT5G58860.1	64.286	518	167	4	1	510	1	508	0.0	686
Msa1237740	AT5G23190.1	47.481	516	255	9	7	515	39	545	8.99e-158	462
Msa1237740	AT5G08250.2	45.857	519	258	12	7	515	40	545	1.01e-150	443
Msa1237740	AT5G08250.1	47.368	494	237	12	32	515	3	483	1.63e-150	441
Msa1237740	AT1G13150.1	41.093	494	273	7	28	513	37	520	2.46e-126	380
Msa1237740	AT1G13140.1	39.676	494	278	7	29	513	45	527	3.27e-126	380

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Find 158 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGGGAGAGATTCAG+GGG	0.582210	8_2:+17306251	Msa1237740:CDS
AAACCCGTGGCACATGTTTG+CGG	0.504977	8_2:-17305272	None:intergenic
AAAGTCGATCCTTAATGGCT+CGG	0.573253	8_2:-17305142	None:intergenic
AAAGTGGACCGATGAGCCTT+TGG	0.373904	8_2:+17305733	Msa1237740:CDS
AAATATTGTCAAAAGTGAGT+CGG	0.641618	8_2:-17305226	None:intergenic
AAATGGGATTGCACAGATGC+AGG	0.493646	8_2:-17304883	None:intergenic
AACACTAAGGCTGTACCCTT+CGG	0.493398	8_2:+17305805	Msa1237740:CDS
AACCCGTGGCACATGTTTGC+GGG	0.399290	8_2:-17305271	None:intergenic
AACTATACAAAATGAAAAGG+AGG	0.574356	8_2:+17306237	Msa1237740:CDS
AAGATCTTCTCTTCCACCTT+TGG	0.333812	8_2:-17305662	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGCTTCTTAGCTAAAAAT+GGG	-	chr8_2:17304902-17304921	None:intergenic	30.0%
TCAGGGTTAATGTTTACAAT+AGG	+	chr8_2:17306194-17306213	Msa1237740:CDS	30.0%
CAGGGTTAATGTTTACAATA+GGG	+	chr8_2:17306195-17306214	Msa1237740:CDS	30.0%
TGTTTACAATAGGGATTTGA+AGG	+	chr8_2:17306204-17306223	Msa1237740:CDS	30.0%
GTTTACAATAGGGATTTGAA+GGG	+	chr8_2:17306205-17306224	Msa1237740:CDS	30.0%
CTTGCTTCTTAGCTAAAAAT+GGG	-	chr8_2:17304902-17304921	None:intergenic	30.0%
TCAGGGTTAATGTTTACAAT+AGG	+	chr8_2:17306194-17306213	Msa1237740:CDS	30.0%
CAGGGTTAATGTTTACAATA+GGG	+	chr8_2:17306195-17306214	Msa1237740:CDS	30.0%
TGTTTACAATAGGGATTTGA+AGG	+	chr8_2:17306204-17306223	Msa1237740:CDS	30.0%
GTTTACAATAGGGATTTGAA+GGG	+	chr8_2:17306205-17306224	Msa1237740:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	17304687	17306309	17304687	ID=Msa1237740;Name=Msa1237740
chr8_2	mRNA	17304687	17306309	17304687	ID=Msa1237740-mRNA-1;Parent=Msa1237740;Name=Msa1237740-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|540
chr8_2	exon	17304687	17306309	17304687	ID=Msa1237740-mRNA-1:exon:6579;Parent=Msa1237740-mRNA-1
chr8_2	CDS	17304687	17306309	17304687	ID=Msa1237740-mRNA-1:cds;Parent=Msa1237740-mRNA-1

Gene Sequence

>Msa1237740

ATGGAAACTTGTACGGCTCTATTACTTTTAACGGCCATAACAGCTTACTTGCTTTGGTTCACCTTCATCTCACGGTCATTGAGAGGCCCACGTGTCTGGCCACTATTGGGCAGTCTACCAGGCCTCATTGAGAATTGTGAACGTATGCATGATTGGATCTGTGACAACCTACGCGCGTGTGGTGGCACGTACCAGACCTGCATCTGTGCAATCCCATTTTTAGCTAAGAAGCAAGGTCTCGTGACTGTCACATGCGACCCGAGGAATTTGGAGCATATACTAAAGACCCGGTTCGACAATTACCCGAAAGGGCCTACGTGGCAAGCAGTGTTTCATGATTTGTTGGGTGATGGGATCTTTAACTCTGATGGTAACACGTGGGTGTTCCAGCGCAAGACAGCCGCGCTGGAATTTACCACGCGTACTTTGCGCCAAGCCATGGCTAGATGGGTTAGCCGAGCCATTAAGGATCGACTTTGCACGATTTTGAAGAAAGCTGAGGTGCAAGGTGAGCCGGTGGATCTACAAGATGTGATGCTCCGACTCACTTTTGACAATATTTGTGGTTTGGCTTTTGGAAGAGACCCGCAAACATGTGCCACGGGTTTGCCTGAAAATGGTTTTGCAGCCGCTTTTGATCGAGCCACTGAAGCCACGCTTCAGCGGTTTATATTACCTGAGGTGTTATGGAAGGTGAAGAAATGGCTTGGGCTTGGTATGGAAGTTGGCTTGAGTCGAAGCCTTGCTTTTGTGGACCAACATTTGTCAAGTGTGATTGAGAAGCGCAAAGTGGAATTGCTGAGTCAGCAAAAAGATGGGTCCCTTCTTCATGATGACTTGCTGACTAGGTTTATGAGGAAGAAAGAATCCTATTCGGACAAGTTTCTTCAACACGTGGCGTTGAACTTCATCCTAGCTGGACGTGACACATCATCGGTTGCACTGAGCTGGTTTTTTTGGTTGGTGATTCAGAATCCAAAGGTGGAAGAGAAGATCTTACATGAGATTTGCATGGTCTTGATGGAGACACGTGGTGCTGACATGGAAAAGTGGACCGATGAGCCTTTGGGATTTGAAGAAGTTGACCGTTTGGTTTATCTTAAGGCTGCCTTGTCGGAAACACTAAGGCTGTACCCTTCGGTGCCAGAGGATTCAAAGCATGTGGTGAAGGACGACGTGTTGCCGGATGGAACCTTTGTTCCGGCTGGATCATCTGTGACATATTCGATATATTCGGCTGGGAGGTTGAAGTCTACATGGGGTGAGGATTGCATGGAGTTTAGGCCAGAGAGGTGGTTGTCATTGGATGGGACAACGTTCATCATGCATGACTCTTTCAAGTTTGTTGCATTCAATGCTGGTCCAAGAATATGTTTGGGGAAGGACCTGGCTTACCTTCAGATGAAGTCAATTGCTGCTGCTGTGCTTCTCCGTCATCGTCTTGCGGTGGTTCCTGGCCACCGGGTGGAGCAAAAGATGTCACTCACCTTGTTCATGAAAAATGGTCTCAGGGTTAATGTTTACAATAGGGATTTGAAGGGTGTTTTTGCAACTATACAAAATGAAAAGGAGGGAGAGATTCAGGGGAAAGTGTTGAATGATTTGAAATGCAATGGAACTTAG

Protein sequence

>Msa1237740

METCTALLLLTAITAYLLWFTFISRSLRGPRVWPLLGSLPGLIENCERMHDWICDNLRACGGTYQTCICAIPFLAKKQGLVTVTCDPRNLEHILKTRFDNYPKGPTWQAVFHDLLGDGIFNSDGNTWVFQRKTAALEFTTRTLRQAMARWVSRAIKDRLCTILKKAEVQGEPVDLQDVMLRLTFDNICGLAFGRDPQTCATGLPENGFAAAFDRATEATLQRFILPEVLWKVKKWLGLGMEVGLSRSLAFVDQHLSSVIEKRKVELLSQQKDGSLLHDDLLTRFMRKKESYSDKFLQHVALNFILAGRDTSSVALSWFFWLVIQNPKVEEKILHEICMVLMETRGADMEKWTDEPLGFEEVDRLVYLKAALSETLRLYPSVPEDSKHVVKDDVLPDGTFVPAGSSVTYSIYSAGRLKSTWGEDCMEFRPERWLSLDGTTFIMHDSFKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLAVVPGHRVEQKMSLTLFMKNGLRVNVYNRDLKGVFATIQNEKEGEIQGKVLNDLKCNGT*