Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881090 | RHN64847.1 | 98.596 | 356 | 4 | 1 | 1 | 355 | 1 | 356 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881090 | sp|Q94AN4|AP2L1_ARATH | 54.416 | 351 | 122 | 6 | 7 | 346 | 16 | 339 | 7.39e-106 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881090 | A0A396IPM2 | 98.596 | 356 | 4 | 1 | 1 | 355 | 1 | 356 | 0.0 | 728 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0881090 | TF | AP2/ERF-AP2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0881090 | 0.821902 | 3.154531e-53 | -8.615850e-47 |
| Msa0028420 | Msa0881090 | 0.811209 | 7.850778e-51 | -8.615850e-47 |
| Msa0081520 | Msa0881090 | 0.824403 | 8.225859e-54 | -8.615850e-47 |
| Msa0614000 | Msa0881090 | 0.807858 | 4.116393e-50 | -8.615850e-47 |
| Msa0626450 | Msa0881090 | 0.845363 | 4.254382e-59 | -8.615850e-47 |
| Msa0626490 | Msa0881090 | 0.845338 | 4.322696e-59 | -8.615850e-47 |
| Msa0638480 | Msa0881090 | 0.814795 | 1.283990e-51 | -8.615850e-47 |
| Msa0663270 | Msa0881090 | 0.815216 | 1.035896e-51 | -8.615850e-47 |
| Msa0664090 | Msa0881090 | 0.848865 | 4.667005e-60 | -8.615850e-47 |
| Msa0664150 | Msa0881090 | 0.812565 | 3.976604e-51 | -8.615850e-47 |
| Msa0664600 | Msa0881090 | 0.843758 | 1.150482e-58 | -8.615850e-47 |
| Msa0683570 | Msa0881090 | 0.825150 | 5.484899e-54 | -8.615850e-47 |
| Msa0795870 | Msa0881090 | 0.813936 | 1.988088e-51 | -8.615850e-47 |
| Msa0833650 | Msa0881090 | 0.809392 | 1.935399e-50 | -8.615850e-47 |
| Msa0173890 | Msa0881090 | 0.810190 | 1.303585e-50 | -8.615850e-47 |
| Msa0225460 | Msa0881090 | 0.804553 | 2.044232e-49 | -8.615850e-47 |
| Msa0225680 | Msa0881090 | 0.801686 | 8.007937e-49 | -8.615850e-47 |
| Msa0225860 | Msa0881090 | 0.817227 | 3.679536e-52 | -8.615850e-47 |
| Msa0267110 | Msa0881090 | 0.806586 | 7.654461e-50 | -8.615850e-47 |
| Msa0300270 | Msa0881090 | 0.820225 | 7.676879e-53 | -8.615850e-47 |
| Msa0300320 | Msa0881090 | 0.805533 | 1.275161e-49 | -8.615850e-47 |
| Msa0337700 | Msa0881090 | 0.822565 | 2.212855e-53 | -8.615850e-47 |
| Msa0513160 | Msa0881090 | 0.800360 | 1.494670e-48 | -8.615850e-47 |
| Msa0527820 | Msa0881090 | 0.837099 | 6.347283e-57 | -8.615850e-47 |
| Msa0527860 | Msa0881090 | 0.802829 | 4.658202e-49 | -8.615850e-47 |
| Msa0580370 | Msa0881090 | 0.813768 | 2.165600e-51 | -8.615850e-47 |
| Msa0582480 | Msa0881090 | 0.848744 | 5.043862e-60 | -8.615850e-47 |
| Msa0586220 | Msa0881090 | 0.849045 | 4.158539e-60 | -8.615850e-47 |
| Msa0597790 | Msa0881090 | 0.827306 | 1.682739e-54 | -8.615850e-47 |
| Msa0861510 | Msa0881090 | 0.808554 | 2.924979e-50 | -8.615850e-47 |
| Msa0861600 | Msa0881090 | 0.808342 | 3.246310e-50 | -8.615850e-47 |
| Msa0881090 | Msa0896540 | 0.801377 | 9.265261e-49 | -8.615850e-47 |
| Msa0881090 | Msa1005870 | 0.805874 | 1.080983e-49 | -8.615850e-47 |
| Msa0881090 | Msa1044470 | 0.823444 | 1.380378e-53 | -8.615850e-47 |
| Msa0881090 | Msa1048920 | 0.805864 | 1.086276e-49 | -8.615850e-47 |
| Msa0881090 | Msa1092010 | 0.808698 | 2.725019e-50 | -8.615850e-47 |
| Msa0881090 | Msa1132840 | 0.815197 | 1.045901e-51 | -8.615850e-47 |
| Msa0881090 | Msa1157870 | 0.800636 | 1.313104e-48 | -8.615850e-47 |
| Msa0881090 | Msa1217210 | 0.833590 | 4.887303e-56 | -8.615850e-47 |
| Msa0881090 | Msa1222350 | 0.976704 | 2.451310e-142 | -8.615850e-47 |
| Msa0881090 | Msa1237740 | 0.821320 | 4.299231e-53 | -8.615850e-47 |
| Msa0881090 | Msa1264710 | 0.890206 | 1.215038e-73 | -8.615850e-47 |
| Msa0881090 | Msa1318170 | 0.821060 | 4.933960e-53 | -8.615850e-47 |
| Msa0881090 | Msa1337900 | 0.916617 | 1.436635e-85 | -8.615850e-47 |
| Msa0881090 | Msa1348090 | 0.803487 | 3.405346e-49 | -8.615850e-47 |
| Msa0881090 | Msa1356830 | 0.800344 | 1.506033e-48 | -8.615850e-47 |
| Msa0881090 | Msa1388600 | 0.825450 | 4.658139e-54 | -8.615850e-47 |
| Msa0881090 | Msa1437940 | 0.806957 | 6.390197e-50 | -8.615850e-47 |
| Msa0881090 | Msa1440960 | 0.832931 | 7.132037e-56 | -8.615850e-47 |
| Msa0881090 | Msa1446810 | 0.802217 | 6.230840e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881090 | MtrunA17_Chr4g0073521 | 98.596 | 356 | 4 | 1 | 1 | 355 | 1 | 356 | 0.0 | 728 |
| Msa0881090 | MtrunA17_Chr4g0002011 | 61.656 | 326 | 85 | 7 | 38 | 350 | 28 | 326 | 9.33e-128 | 369 |
| Msa0881090 | MtrunA17_Chr7g0216601 | 70.833 | 192 | 52 | 2 | 41 | 229 | 60 | 250 | 4.00e-98 | 296 |
| Msa0881090 | MtrunA17_Chr8g0355191 | 48.949 | 333 | 151 | 6 | 9 | 334 | 23 | 343 | 6.96e-98 | 296 |
| Msa0881090 | MtrunA17_Chr8g0362541 | 52.038 | 319 | 115 | 10 | 45 | 335 | 68 | 376 | 7.42e-94 | 286 |
| Msa0881090 | MtrunA17_Chr6g0452911 | 48.534 | 307 | 121 | 6 | 50 | 325 | 65 | 365 | 1.35e-93 | 284 |
| Msa0881090 | MtrunA17_Chr8g0355181 | 76.437 | 174 | 41 | 0 | 45 | 218 | 55 | 228 | 3.16e-92 | 281 |
| Msa0881090 | MtrunA17_Chr4g0072291 | 71.598 | 169 | 45 | 1 | 45 | 210 | 158 | 326 | 3.38e-87 | 272 |
| Msa0881090 | MtrunA17_Chr8g0343851 | 69.832 | 179 | 51 | 1 | 35 | 210 | 234 | 412 | 1.13e-85 | 270 |
| Msa0881090 | MtrunA17_Chr2g0328971 | 70.482 | 166 | 49 | 0 | 45 | 210 | 166 | 331 | 9.09e-85 | 266 |
| Msa0881090 | MtrunA17_Chr7g0249621 | 65.803 | 193 | 61 | 2 | 21 | 210 | 236 | 426 | 1.88e-84 | 269 |
| Msa0881090 | MtrunA17_Chr7g0249621 | 40.000 | 85 | 43 | 1 | 136 | 212 | 250 | 334 | 3.49e-11 | 64.7 |
| Msa0881090 | MtrunA17_Chr4g0032631 | 64.249 | 193 | 60 | 3 | 22 | 210 | 143 | 330 | 3.65e-84 | 265 |
| Msa0881090 | MtrunA17_Chr3g0135161 | 71.084 | 166 | 48 | 0 | 45 | 210 | 309 | 474 | 6.82e-83 | 265 |
| Msa0881090 | MtrunA17_Chr4g0054351 | 60.829 | 217 | 72 | 3 | 45 | 248 | 309 | 525 | 8.25e-83 | 264 |
| Msa0881090 | MtrunA17_Chr1g0152161 | 62.255 | 204 | 65 | 2 | 19 | 210 | 273 | 476 | 9.57e-83 | 264 |
| Msa0881090 | MtrunA17_Chr5g0400871 | 69.822 | 169 | 48 | 1 | 45 | 210 | 248 | 416 | 1.36e-81 | 258 |
| Msa0881090 | MtrunA17_Chr2g0305821 | 82.166 | 157 | 25 | 2 | 1 | 155 | 1 | 156 | 1.88e-75 | 230 |
| Msa0881090 | MtrunA17_Chr5g0412151 | 69.822 | 169 | 48 | 1 | 45 | 210 | 223 | 391 | 1.94e-71 | 231 |
| Msa0881090 | MtrunA17_Chr5g0412151 | 41.463 | 82 | 40 | 1 | 142 | 215 | 221 | 302 | 9.13e-11 | 63.2 |
| Msa0881090 | MtrunA17_Chr2g0305831 | 58.049 | 205 | 65 | 7 | 152 | 343 | 1 | 197 | 6.42e-66 | 207 |
| Msa0881090 | MtrunA17_Chr8g0367311 | 67.188 | 128 | 42 | 0 | 83 | 210 | 22 | 149 | 1.19e-57 | 187 |
| Msa0881090 | MtrunA17_Chr7g0257361 | 48.472 | 229 | 99 | 5 | 4 | 223 | 10 | 228 | 6.93e-53 | 180 |
| Msa0881090 | MtrunA17_Chr4g0053181 | 46.970 | 198 | 94 | 4 | 50 | 247 | 177 | 363 | 3.87e-40 | 148 |
| Msa0881090 | MtrunA17_Chr7g0263581 | 46.703 | 182 | 87 | 4 | 50 | 231 | 140 | 311 | 3.18e-39 | 145 |
| Msa0881090 | MtrunA17_Chr5g0401891 | 47.802 | 182 | 83 | 4 | 50 | 231 | 153 | 322 | 1.87e-38 | 143 |
| Msa0881090 | MtrunA17_Chr4g0030191 | 49.689 | 161 | 73 | 3 | 50 | 210 | 132 | 284 | 1.66e-37 | 140 |
| Msa0881090 | MtrunA17_Chr2g0325911 | 42.857 | 182 | 81 | 4 | 50 | 231 | 135 | 293 | 1.03e-30 | 121 |
| Msa0881090 | MtrunA17_Chr3g0126151 | 48.387 | 93 | 47 | 1 | 94 | 186 | 47 | 138 | 1.63e-22 | 92.0 |
| Msa0881090 | MtrunA17_Chr8g0367321 | 61.702 | 47 | 18 | 0 | 36 | 82 | 145 | 191 | 1.15e-14 | 72.0 |
| Msa0881090 | MtrunA17_Chr1g0170761 | 35.393 | 178 | 103 | 6 | 22 | 198 | 112 | 278 | 1.42e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881090 | AT1G16060.1 | 54.416 | 351 | 122 | 6 | 7 | 346 | 16 | 339 | 7.52e-107 | 317 |
| Msa0881090 | AT1G79700.2 | 51.791 | 363 | 109 | 8 | 1 | 350 | 1 | 310 | 2.54e-99 | 296 |
| Msa0881090 | AT3G54320.3 | 74.242 | 198 | 39 | 3 | 30 | 215 | 37 | 234 | 1.56e-92 | 283 |
| Msa0881090 | AT3G54320.1 | 74.242 | 198 | 39 | 3 | 30 | 215 | 37 | 234 | 1.85e-92 | 283 |
| Msa0881090 | AT1G79700.1 | 49.036 | 363 | 109 | 9 | 1 | 350 | 1 | 300 | 9.98e-88 | 266 |
| Msa0881090 | AT5G57390.2 | 71.598 | 169 | 45 | 1 | 45 | 210 | 81 | 249 | 1.08e-86 | 268 |
| Msa0881090 | AT5G57390.1 | 71.598 | 169 | 45 | 1 | 45 | 210 | 199 | 367 | 7.37e-86 | 270 |
| Msa0881090 | AT1G51190.1 | 59.906 | 212 | 76 | 3 | 2 | 210 | 149 | 354 | 1.90e-84 | 266 |
| Msa0881090 | AT5G17430.2 | 66.667 | 189 | 55 | 2 | 25 | 210 | 129 | 312 | 1.62e-83 | 263 |
| Msa0881090 | AT5G17430.1 | 66.667 | 189 | 55 | 2 | 25 | 210 | 191 | 374 | 2.90e-83 | 264 |
| Msa0881090 | AT1G72570.1 | 66.304 | 184 | 56 | 2 | 33 | 210 | 204 | 387 | 3.33e-83 | 259 |
| Msa0881090 | AT3G20840.1 | 67.456 | 169 | 52 | 1 | 45 | 210 | 177 | 345 | 3.06e-81 | 258 |
| Msa0881090 | AT4G37750.1 | 68.047 | 169 | 51 | 1 | 45 | 210 | 279 | 447 | 2.35e-77 | 248 |
| Msa0881090 | AT5G65510.4 | 69.231 | 169 | 49 | 1 | 45 | 210 | 169 | 337 | 1.75e-72 | 232 |
| Msa0881090 | AT5G10510.2 | 69.277 | 166 | 51 | 0 | 45 | 210 | 226 | 391 | 2.26e-72 | 234 |
| Msa0881090 | AT5G65510.2 | 69.231 | 169 | 49 | 1 | 45 | 210 | 227 | 395 | 3.12e-72 | 233 |
| Msa0881090 | AT5G65510.1 | 69.231 | 169 | 49 | 1 | 45 | 210 | 227 | 395 | 3.12e-72 | 233 |
| Msa0881090 | AT5G10510.7 | 68.047 | 169 | 51 | 1 | 45 | 210 | 226 | 394 | 3.47e-70 | 229 |
| Msa0881090 | AT5G10510.5 | 68.047 | 169 | 51 | 1 | 45 | 210 | 226 | 394 | 3.47e-70 | 229 |
| Msa0881090 | AT5G10510.1 | 68.047 | 169 | 51 | 1 | 45 | 210 | 249 | 417 | 6.58e-70 | 229 |
| Msa0881090 | AT5G10510.6 | 68.047 | 169 | 51 | 1 | 45 | 210 | 264 | 432 | 7.01e-70 | 229 |
| Msa0881090 | AT5G10510.4 | 68.047 | 169 | 51 | 1 | 45 | 210 | 264 | 432 | 7.01e-70 | 229 |
| Msa0881090 | AT1G16060.3 | 52.941 | 272 | 93 | 5 | 83 | 346 | 25 | 269 | 2.17e-67 | 214 |
| Msa0881090 | AT1G79700.4 | 50.545 | 275 | 76 | 6 | 83 | 350 | 7 | 228 | 9.03e-66 | 208 |
| Msa0881090 | AT1G79700.3 | 50.545 | 275 | 76 | 6 | 83 | 350 | 13 | 234 | 1.18e-65 | 208 |
| Msa0881090 | AT3G54320.4 | 80.451 | 133 | 26 | 0 | 83 | 215 | 36 | 168 | 1.79e-65 | 211 |
| Msa0881090 | AT3G54320.5 | 80.451 | 133 | 26 | 0 | 83 | 215 | 36 | 168 | 1.79e-65 | 211 |
| Msa0881090 | AT5G10510.3 | 60.317 | 189 | 52 | 1 | 45 | 210 | 264 | 452 | 1.86e-65 | 218 |
| Msa0881090 | AT5G65510.3 | 68.345 | 139 | 41 | 1 | 45 | 180 | 169 | 307 | 4.57e-65 | 209 |
| Msa0881090 | AT1G16060.2 | 50.000 | 232 | 81 | 5 | 123 | 346 | 1 | 205 | 7.20e-53 | 174 |
| Msa0881090 | AT1G16060.4 | 50.000 | 232 | 81 | 5 | 123 | 346 | 1 | 205 | 7.20e-53 | 174 |
| Msa0881090 | AT1G16060.6 | 50.000 | 232 | 81 | 5 | 123 | 346 | 1 | 205 | 7.20e-53 | 174 |
| Msa0881090 | AT1G16060.5 | 50.000 | 232 | 81 | 5 | 123 | 346 | 1 | 205 | 7.20e-53 | 174 |
| Msa0881090 | AT2G41710.1 | 52.083 | 192 | 80 | 3 | 31 | 219 | 52 | 234 | 1.91e-52 | 179 |
| Msa0881090 | AT2G41710.4 | 52.083 | 192 | 80 | 3 | 31 | 219 | 52 | 234 | 2.53e-52 | 180 |
| Msa0881090 | AT2G41710.2 | 50.761 | 197 | 80 | 4 | 31 | 219 | 52 | 239 | 6.88e-50 | 172 |
| Msa0881090 | AT2G41710.3 | 44.053 | 227 | 80 | 4 | 31 | 219 | 52 | 269 | 1.78e-45 | 162 |
| Msa0881090 | AT3G54320.2 | 82.796 | 93 | 16 | 0 | 123 | 215 | 1 | 93 | 1.69e-42 | 149 |
| Msa0881090 | AT2G28550.3 | 46.000 | 200 | 94 | 4 | 50 | 249 | 154 | 339 | 3.31e-40 | 147 |
| Msa0881090 | AT4G36920.1 | 43.721 | 215 | 107 | 5 | 50 | 258 | 132 | 338 | 2.21e-39 | 145 |
| Msa0881090 | AT4G36920.2 | 43.721 | 215 | 107 | 5 | 50 | 258 | 132 | 338 | 2.21e-39 | 145 |
| Msa0881090 | AT5G67180.2 | 45.946 | 185 | 83 | 4 | 35 | 210 | 73 | 249 | 4.19e-38 | 138 |
| Msa0881090 | AT5G67180.3 | 45.946 | 185 | 83 | 4 | 35 | 210 | 73 | 249 | 7.62e-38 | 137 |
| Msa0881090 | AT5G67180.1 | 45.946 | 185 | 83 | 4 | 35 | 210 | 73 | 249 | 2.26e-37 | 137 |
| Msa0881090 | AT2G28550.4 | 48.905 | 137 | 62 | 3 | 50 | 186 | 154 | 282 | 1.33e-31 | 122 |
| Msa0881090 | AT2G28550.1 | 42.500 | 200 | 86 | 5 | 50 | 249 | 154 | 324 | 5.34e-31 | 122 |
| Msa0881090 | AT1G16060.7 | 43.069 | 202 | 80 | 5 | 153 | 346 | 9 | 183 | 5.25e-30 | 114 |
| Msa0881090 | AT5G67180.4 | 43.293 | 164 | 76 | 4 | 35 | 189 | 73 | 228 | 1.35e-28 | 112 |
| Msa0881090 | AT2G28550.2 | 48.780 | 123 | 55 | 3 | 50 | 172 | 154 | 268 | 1.10e-25 | 104 |
| Msa0881090 | AT2G28550.6 | 48.780 | 123 | 55 | 3 | 50 | 172 | 154 | 268 | 1.10e-25 | 104 |
| Msa0881090 | AT2G28550.5 | 41.916 | 167 | 75 | 3 | 83 | 249 | 14 | 158 | 1.26e-23 | 99.4 |
| Msa0881090 | AT5G60120.4 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 2.30e-21 | 94.7 |
| Msa0881090 | AT5G60120.3 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 2.30e-21 | 94.7 |
| Msa0881090 | AT5G60120.5 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 2.30e-21 | 94.7 |
| Msa0881090 | AT5G60120.6 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 4.59e-21 | 94.4 |
| Msa0881090 | AT5G60120.1 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 4.60e-21 | 94.4 |
| Msa0881090 | AT5G60120.2 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 4.92e-21 | 94.7 |
| Msa0881090 | AT2G39250.2 | 43.564 | 101 | 50 | 2 | 50 | 150 | 109 | 202 | 5.30e-20 | 88.2 |
| Msa0881090 | AT2G39250.1 | 43.564 | 101 | 50 | 2 | 50 | 150 | 109 | 202 | 1.41e-19 | 88.6 |
| Msa0881090 | AT3G54990.2 | 43.269 | 104 | 52 | 2 | 50 | 153 | 123 | 219 | 1.07e-15 | 76.3 |
| Msa0881090 | AT3G54990.1 | 43.269 | 104 | 52 | 2 | 50 | 153 | 123 | 219 | 3.59e-15 | 76.3 |
Find 99 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCAGTCATCTAAGTTTA+AGG | 0.098001 | 6_1:+28068371 | Msa0881090:CDS |
| TCTTTATAAATTAGCTAATT+AGG | 0.158119 | 6_1:+28068675 | Msa0881090:three_prime_UTR |
| GCTCAATTCAAAAGAGAATT+TGG | 0.171485 | 6_1:+28068587 | Msa0881090:exon |
| ATATTTATATATAGTATTAA+TGG | 0.232581 | 6_1:-28063406 | None:intergenic |
| ATCTAGCAGCATTGAAATAT+TGG | 0.269149 | 6_1:+28064410 | Msa0881090:CDS |
| AAGCTGTAGCTGCTTCTTCT+TGG | 0.308304 | 6_1:-28068062 | None:intergenic |
| ATAACGGCTGAGATCGAAAT+TGG | 0.311170 | 6_1:-28068127 | None:intergenic |
| CGTTGAGGTGGAGAAGTTCT+AGG | 0.318274 | 6_1:-28063590 | None:intergenic |
| TTGGGTGAAGAAGAATTTAA+AGG | 0.321665 | 6_1:-28063327 | None:intergenic |
| CATTAAGCTTACAAATAAAA+AGG | 0.328490 | 6_1:+28063126 | Msa0881090:five_prime_UTR |
| GTCATCGTTGCTATTATTGT+TGG | 0.330644 | 6_1:-28068166 | None:intergenic |
| GATTAATACTCACCTTCTTA+AGG | 0.332089 | 6_1:-28064612 | None:intergenic |
| ATGAATTATAGTATAGTGTT+TGG | 0.332488 | 6_1:-28063346 | None:intergenic |
| AAAGGGATGGGCTAAGGAAT+GGG | 0.338837 | 6_1:-28063309 | None:intergenic |
| GTCATCTAAGTTTAAGGAAA+TGG | 0.343211 | 6_1:+28068377 | Msa0881090:CDS |
| TCTAGCAGCATTGAAATATT+GGG | 0.363825 | 6_1:+28064411 | Msa0881090:CDS |
| AGCTGTAGCTGCTTCTTCTT+GGG | 0.378837 | 6_1:-28068061 | None:intergenic |
| AATGTCACAAAGATTAATAT+TGG | 0.380390 | 6_1:-28068199 | None:intergenic |
| CAATCAAGGGAGGAGTATAT+TGG | 0.384836 | 6_1:+28064587 | Msa0881090:CDS |
| ATCTCAGCCGTTATATTAAG+TGG | 0.390059 | 6_1:+28068136 | Msa0881090:CDS |
| ACAGTCAAATTCAATACAAT+TGG | 0.396468 | 6_1:-28068751 | None:intergenic |
| CTCAAACTCTAATGAAGAAC+TGG | 0.396693 | 6_1:+28068245 | Msa0881090:CDS |
| GTTTAAGGAAATGGTGGAAA+TGG | 0.403137 | 6_1:+28068386 | Msa0881090:CDS |
| TGAATTATAGTATAGTGTTT+GGG | 0.403305 | 6_1:-28063345 | None:intergenic |
| ACGTTCCATTATGACTTTGA+AGG | 0.409164 | 6_1:+28068549 | Msa0881090:CDS |
| AATTACCGGAAAATTAATAA+TGG | 0.409895 | 6_1:-28064443 | None:intergenic |
| GGCAATAAGTATCTTTATCT+CGG | 0.416691 | 6_1:+28065635 | Msa0881090:CDS |
| TATCTTTATCTCGGAACATA+TGG | 0.418592 | 6_1:+28065644 | Msa0881090:CDS |
| TTTGTGGCCGTCTGTAAAAT+CGG | 0.425770 | 6_1:-28063234 | None:intergenic |
| TCATCGTTGCTATTATTGTT+GGG | 0.426434 | 6_1:-28068165 | None:intergenic |
| TGGGTGAAGAAGAATTTAAA+GGG | 0.432032 | 6_1:-28063326 | None:intergenic |
| TTCATTAGAGTTTGAGTCGT+TGG | 0.432547 | 6_1:-28068238 | None:intergenic |
| ATTTGTGGGACAAGAATTGT+TGG | 0.438001 | 6_1:+28063804 | Msa0881090:CDS |
| CAGCACCTTCAAAGTCATAA+TGG | 0.453462 | 6_1:-28068554 | None:intergenic |
| GTTTAAGCCACTTAATATAA+CGG | 0.455696 | 6_1:-28068143 | None:intergenic |
| TAAAGGGATGGGCTAAGGAA+TGG | 0.457937 | 6_1:-28063310 | None:intergenic |
| GTCGATATGAAGCTCATTTG+TGG | 0.463814 | 6_1:+28063789 | Msa0881090:CDS |
| ATAATGGAACGTAGGCATAA+TGG | 0.466327 | 6_1:-28068538 | None:intergenic |
| AGGGCTGATGTGGCACTAGT+TGG | 0.472897 | 6_1:-28068339 | None:intergenic |
| TAATGGTGCATTAATTTGAA+AGG | 0.481532 | 6_1:-28063389 | None:intergenic |
| TCGATATGAAGCTCATTTGT+GGG | 0.483951 | 6_1:+28063790 | Msa0881090:CDS |
| AAGTACGTTTGAATGTCATC+AGG | 0.487256 | 6_1:-28068471 | None:intergenic |
| ATGACTGAAGCAAAAGCTCT+AGG | 0.492154 | 6_1:-28068359 | None:intergenic |
| AATGAGTCTCAGAACAAGAA+AGG | 0.503226 | 6_1:+28063827 | Msa0881090:CDS |
| GGAAGGTGGGAGGCACGGAT+TGG | 0.503282 | 6_1:+28065602 | Msa0881090:CDS |
| TTCAGGTGCTTATGATAATG+AGG | 0.506979 | 6_1:+28064366 | Msa0881090:intron |
| TTCTATTGACGAAGCTACAT+TGG | 0.508550 | 6_1:+28068305 | Msa0881090:CDS |
| TCGATCAGGCACCGTTGGAC+AGG | 0.512931 | 6_1:+28063767 | Msa0881090:intron |
| GAATTTAAAGGGATGGGCTA+AGG | 0.517366 | 6_1:-28063315 | None:intergenic |
| ATGAGTCTCAGAACAAGAAA+GGG | 0.517662 | 6_1:+28063828 | Msa0881090:CDS |
| TGACTGAAGCAAAAGCTCTA+GGG | 0.520622 | 6_1:-28068358 | None:intergenic |
| TGAAGAAGAATTTAAAGGGA+TGG | 0.528945 | 6_1:-28063322 | None:intergenic |
| CAAAAGCTCTAGGGCTGATG+TGG | 0.531124 | 6_1:-28068349 | None:intergenic |
| TTGAAATGGAGAGTCAATCA+AGG | 0.532530 | 6_1:+28064573 | Msa0881090:CDS |
| AGCTAATTTATAAAGAGTAT+CGG | 0.535039 | 6_1:-28068668 | None:intergenic |
| GGCTGAAAGATGGTTGTTTG+TGG | 0.538989 | 6_1:-28063250 | None:intergenic |
| AAGGGATGGGCTAAGGAATG+GGG | 0.543605 | 6_1:-28063308 | None:intergenic |
| GACATCATCATAACGGAAGG+TGG | 0.545087 | 6_1:+28065588 | Msa0881090:intron |
| CATATATATAGCTATTGTAA+AGG | 0.551463 | 6_1:-28068788 | None:intergenic |
| TACCATCGATCAGGCACCGT+TGG | 0.551468 | 6_1:+28063762 | Msa0881090:intron |
| GAAGAAGAATTTAAAGGGAT+GGG | 0.551603 | 6_1:-28063321 | None:intergenic |
| AGTATATTGGATCCTTAAGA+AGG | 0.558908 | 6_1:+28064600 | Msa0881090:CDS |
| CTGTCACCACCAAAGCAAAA+CGG | 0.561267 | 6_1:+28063552 | Msa0881090:CDS |
| ATCTAAGTTTAAGGAAATGG+TGG | 0.564662 | 6_1:+28068380 | Msa0881090:CDS |
| CCACCAAAGCAAAACGGACG+AGG | 0.564803 | 6_1:+28063558 | Msa0881090:CDS |
| TGCTTATGATAATGAGGAGA+CGG | 0.567000 | 6_1:+28064372 | Msa0881090:CDS |
| TGTGATAGCCGGCTGAAAGA+TGG | 0.577707 | 6_1:-28063260 | None:intergenic |
| TTATGACTTTGAAGGTGCTG+AGG | 0.583578 | 6_1:+28068557 | Msa0881090:CDS |
| CAATATACAGAGGAGTCACT+AGG | 0.587159 | 6_1:+28063618 | Msa0881090:CDS |
| AAATTTCAATGATACCATGT+TGG | 0.588011 | 6_1:+28068503 | Msa0881090:CDS |
| ACAAACAACCATCTTTCAGC+CGG | 0.591544 | 6_1:+28063252 | Msa0881090:five_prime_UTR |
| GTTGAGGTGGAGAAGTTCTA+GGG | 0.592000 | 6_1:-28063589 | None:intergenic |
| TGAAATGGAGAGTCAATCAA+GGG | 0.593771 | 6_1:+28064574 | Msa0881090:CDS |
| CTGTATATTGAGCTGCGTTG+AGG | 0.594111 | 6_1:-28063605 | None:intergenic |
| CTCCAACGTTGTTGACACAT+TGG | 0.595590 | 6_1:-28068421 | None:intergenic |
| TGTTCTAGACATCATCATAA+CGG | 0.603537 | 6_1:+28065581 | Msa0881090:intron |
| ATAACGGAAGGTGGGAGGCA+CGG | 0.604592 | 6_1:+28065597 | Msa0881090:CDS |
| TATATTGAGCTGCGTTGAGG+TGG | 0.606937 | 6_1:-28063602 | None:intergenic |
| CAGAACAAGAAAGGGAGACA+AGG | 0.613931 | 6_1:+28063836 | Msa0881090:CDS |
| ACATCATCATAACGGAAGGT+GGG | 0.615401 | 6_1:+28065589 | Msa0881090:CDS |
| ACGTAGGCATAATGGAGTTG+AGG | 0.618652 | 6_1:-28068530 | None:intergenic |
| TGGTAACAGCATTAAGTCCA+CGG | 0.621825 | 6_1:-28068107 | None:intergenic |
| CTAGACATCATCATAACGGA+AGG | 0.629308 | 6_1:+28065585 | Msa0881090:intron |
| TTCCAATGTGTCAACAACGT+TGG | 0.630167 | 6_1:+28068419 | Msa0881090:CDS |
| CTAAATACAGAGGTGTAGCA+AGG | 0.631468 | 6_1:+28064747 | Msa0881090:CDS |
| CTAGCAGCATTGAAATATTG+GGG | 0.632471 | 6_1:+28064412 | Msa0881090:CDS |
| GCTGGCAGAATTGTGATAGC+CGG | 0.634528 | 6_1:-28063271 | None:intergenic |
| CTTCATATCGACCTGTCCAA+CGG | 0.639587 | 6_1:-28063778 | None:intergenic |
| GATGTGGCACTAGTTGGTCG+AGG | 0.640586 | 6_1:-28068333 | None:intergenic |
| GGAGTTGAGGTCTTCCAACA+TGG | 0.661453 | 6_1:-28068517 | None:intergenic |
| AGCAGCTACAGCTTATGACA+TGG | 0.665369 | 6_1:+28068071 | Msa0881090:CDS |
| TCAAAGTCATAATGGAACGT+AGG | 0.669979 | 6_1:-28068546 | None:intergenic |
| TCATCATAACGGAAGGTGGG+AGG | 0.671171 | 6_1:+28065592 | Msa0881090:CDS |
| GTGATATTTCATTGTCCACG+AGG | 0.678307 | 6_1:-28068275 | None:intergenic |
| CGGGGAGTATCTAAATACAG+AGG | 0.707462 | 6_1:+28064737 | Msa0881090:CDS |
| ATGGCAGCTATTGAATACCG+TGG | 0.709584 | 6_1:+28068090 | Msa0881090:CDS |
| AATGGAGAGTCAATCAAGGG+AGG | 0.710747 | 6_1:+28064577 | Msa0881090:CDS |
| AGAACTGGAATTTAGCCTCG+TGG | 0.711966 | 6_1:+28068260 | Msa0881090:CDS |
| CAACGCAGCTCAATATACAG+AGG | 0.725894 | 6_1:+28063608 | Msa0881090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr6_1:28065124-28065143 | Msa0881090:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr6_1:28065125-28065144 | Msa0881090:intron | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | - | chr6_1:28065173-28065192 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr6_1:28066174-28066193 | Msa0881090:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr6_1:28066175-28066194 | Msa0881090:intron | 10.0% |
| !!! | ATTCTTAAAATAAGTTTTAT+AGG | - | chr6_1:28066613-28066632 | None:intergenic | 10.0% |
| !! | TTAGCTATATATATTAATAT+TGG | - | chr6_1:28067888-28067907 | None:intergenic | 10.0% |
| !!! | TCATTTTGAAACAATTTTTT+TGG | - | chr6_1:28064052-28064071 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr6_1:28064154-28064173 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr6_1:28064178-28064197 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr6_1:28064177-28064196 | Msa0881090:intron | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | - | chr6_1:28064839-28064858 | None:intergenic | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr6_1:28065201-28065220 | Msa0881090:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | - | chr6_1:28065239-28065258 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr6_1:28066176-28066195 | Msa0881090:intron | 15.0% |
| !! | TAATTAAATACGATAAAAGT+TGG | - | chr6_1:28066483-28066502 | None:intergenic | 15.0% |
| !!! | TAAAAATTTATCTTTTCCAA+AGG | + | chr6_1:28066511-28066530 | Msa0881090:intron | 15.0% |
| !! | AACCCATATATATATATATA+AGG | + | chr6_1:28067034-28067053 | Msa0881090:intron | 15.0% |
| !! | ACCCATATATATATATATAA+GGG | + | chr6_1:28067035-28067054 | Msa0881090:intron | 15.0% |
| !! | ACCCTTATATATATATATAT+GGG | - | chr6_1:28067039-28067058 | None:intergenic | 15.0% |
| !! | AACCCTTATATATATATATA+TGG | - | chr6_1:28067040-28067059 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr6_1:28067521-28067540 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr6_1:28067520-28067539 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr6_1:28067301-28067320 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr6_1:28067432-28067451 | Msa0881090:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr6_1:28067520-28067539 | Msa0881090:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr6_1:28067521-28067540 | Msa0881090:intron | 15.0% |
| !! | ATAATTAACCCTATATATAA+AGG | + | chr6_1:28067584-28067603 | Msa0881090:intron | 15.0% |
| !!! | TAAAAATTTGATAATATGCA+TGG | + | chr6_1:28067753-28067772 | Msa0881090:intron | 15.0% |
| !!! | AAAAATTTGATAATATGCAT+GGG | + | chr6_1:28067754-28067773 | Msa0881090:intron | 15.0% |
| !! | TCTTTATAAATTAGCTAATT+AGG | + | chr6_1:28068675-28068694 | Msa0881090:three_prime_UTR | 15.0% |
| !! | CATTAAGCTTACAAATAAAA+AGG | + | chr6_1:28063126-28063145 | Msa0881090:five_prime_UTR | 20.0% |
| !! | TGAATTATAGTATAGTGTTT+GGG | - | chr6_1:28063348-28063367 | None:intergenic | 20.0% |
| !! | ATGAATTATAGTATAGTGTT+TGG | - | chr6_1:28063349-28063368 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr6_1:28064091-28064110 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr6_1:28064168-28064187 | Msa0881090:intron | 20.0% |
| !!! | AAGTACTTAAATGATTCTTT+TGG | - | chr6_1:28064323-28064342 | None:intergenic | 20.0% |
| !!! | AGATACCATTATTAATTTTC+CGG | + | chr6_1:28064438-28064457 | Msa0881090:CDS | 20.0% |
| !! | AATTACCGGAAAATTAATAA+TGG | - | chr6_1:28064446-28064465 | None:intergenic | 20.0% |
| !! | TCAAAAAGAACTAATTGAAA+TGG | + | chr6_1:28064559-28064578 | Msa0881090:CDS | 20.0% |
| !!! | TATAGAGTTTTAACTGTATA+AGG | - | chr6_1:28064799-28064818 | None:intergenic | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr6_1:28064812-28064831 | Msa0881090:intron | 20.0% |
| !!! | ATGTATCTAGTCTTTATTAT+AGG | + | chr6_1:28065449-28065468 | Msa0881090:intron | 20.0% |
| !!! | TCATTTTGTAGTAAAAGAAA+AGG | - | chr6_1:28065721-28065740 | None:intergenic | 20.0% |
| !!! | GTACTAATAATTTTTTTGAG+AGG | - | chr6_1:28065835-28065854 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr6_1:28066199-28066218 | Msa0881090:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr6_1:28066309-28066328 | Msa0881090:intron | 20.0% |
| !!! | TTTTTCCTTATAATTTGAGA+CGG | - | chr6_1:28066421-28066440 | None:intergenic | 20.0% |
| !!! | GGTCTTTTTGTTTATAATTT+GGG | - | chr6_1:28066462-28066481 | None:intergenic | 20.0% |
| !!! | TGGTCTTTTTGTTTATAATT+TGG | - | chr6_1:28066463-28066482 | None:intergenic | 20.0% |
| !!! | AAACAATTTTCATTGGTTAT+GGG | - | chr6_1:28066581-28066600 | None:intergenic | 20.0% |
| !!! | AAAACAATTTTCATTGGTTA+TGG | - | chr6_1:28066582-28066601 | None:intergenic | 20.0% |
| !!! | GATGTAAAAACAATTTTCAT+TGG | - | chr6_1:28066588-28066607 | None:intergenic | 20.0% |
| !! | AAAATCACACTTATTAAGAA+AGG | - | chr6_1:28066675-28066694 | None:intergenic | 20.0% |
| !!! | TTTTTCCCTTTCTTATAATA+TGG | + | chr6_1:28066693-28066712 | Msa0881090:intron | 20.0% |
| !!! | TTTTCCCTTTCTTATAATAT+GGG | + | chr6_1:28066694-28066713 | Msa0881090:intron | 20.0% |
| !!! | ACTCATTCTAAAAAATAAGT+GGG | - | chr6_1:28066917-28066936 | None:intergenic | 20.0% |
| !! | AAGTTGTTAAATACATCTTA+AGG | - | chr6_1:28066956-28066975 | None:intergenic | 20.0% |
| !! | AATGCAGAAAAACAAAATTA+GGG | - | chr6_1:28067138-28067157 | None:intergenic | 20.0% |
| !! | AAACAAATTTGAATTGACTA+GGG | - | chr6_1:28067171-28067190 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGACT+AGG | - | chr6_1:28067172-28067191 | None:intergenic | 20.0% |
| !!! | AATTTTGCAATAACTTTTTG+CGG | - | chr6_1:28067266-28067285 | None:intergenic | 20.0% |
| !! | ATCTTATCTGACATTAAAAT+TGG | + | chr6_1:28067995-28068014 | Msa0881090:intron | 20.0% |
| !! | AATGTCACAAAGATTAATAT+TGG | - | chr6_1:28068202-28068221 | None:intergenic | 20.0% |
| !!! | AGCTAATTTATAAAGAGTAT+CGG | - | chr6_1:28068671-28068690 | None:intergenic | 20.0% |
| !! | CATATATATAGCTATTGTAA+AGG | - | chr6_1:28068791-28068810 | None:intergenic | 20.0% |
| !! | TAATGGTGCATTAATTTGAA+AGG | - | chr6_1:28063392-28063411 | None:intergenic | 25.0% |
| !! | TACACTTCTTTTTATTCCAA+TGG | + | chr6_1:28063457-28063476 | Msa0881090:exon | 25.0% |
| ! | TAGATAAACATATACAAGAG+AGG | - | chr6_1:28063680-28063699 | None:intergenic | 25.0% |
| !!! | TGTTTTAACTTCTTTTCATG+TGG | + | chr6_1:28063923-28063942 | Msa0881090:intron | 25.0% |
| ! | TATATATAAACTACGTACCA+AGG | - | chr6_1:28063997-28064016 | None:intergenic | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | - | chr6_1:28064211-28064230 | None:intergenic | 25.0% |
| ! | AAAAAGTGGTTAGAAATTAC+CGG | - | chr6_1:28064460-28064479 | None:intergenic | 25.0% |
| ! | TGGATGCATATTAAAAAAAG+TGG | - | chr6_1:28064474-28064493 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTAATATGCATCC+AGG | + | chr6_1:28064473-28064492 | Msa0881090:intron | 25.0% |
| ! | CTGAACTAATTAATAAATCC+TGG | - | chr6_1:28064494-28064513 | None:intergenic | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | + | chr6_1:28064817-28064836 | Msa0881090:intron | 25.0% |
| ! | GTACAGTAAATGTAAATAAG+AGG | + | chr6_1:28065050-28065069 | Msa0881090:intron | 25.0% |
| ! | TTCTTAATTACACTCTTGTT+TGG | - | chr6_1:28065350-28065369 | None:intergenic | 25.0% |
| !! | TAAGCAAAACTTCATTTTCT+AGG | + | chr6_1:28065411-28065430 | Msa0881090:intron | 25.0% |
| ! | AGGGAGTAAAAATCAATTTA+AGG | + | chr6_1:28065533-28065552 | Msa0881090:intron | 25.0% |
| ! | TAAATTTAGATTGTTGTACC+TGG | - | chr6_1:28065876-28065895 | None:intergenic | 25.0% |
| ! | AGGTACAACAATCTAAATTT+AGG | + | chr6_1:28065875-28065894 | Msa0881090:intron | 25.0% |
| ! | ACAACAATCTAAATTTAGGT+AGG | + | chr6_1:28065879-28065898 | Msa0881090:intron | 25.0% |
| ! | AATAGAAGCAATGAATTGAA+TGG | - | chr6_1:28065980-28065999 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr6_1:28066198-28066217 | Msa0881090:intron | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | + | chr6_1:28066286-28066305 | Msa0881090:intron | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | + | chr6_1:28066287-28066306 | Msa0881090:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr6_1:28066308-28066327 | Msa0881090:intron | 25.0% |
| !!! | GAATGCATTTAATTTTCCTT+TGG | - | chr6_1:28066530-28066549 | None:intergenic | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | chr6_1:28066852-28066871 | Msa0881090:intron | 25.0% |
| !! | CACTCATTCTAAAAAATAAG+TGG | - | chr6_1:28066918-28066937 | None:intergenic | 25.0% |
| ! | ACACCTTAATAAAAACTAGT+AGG | + | chr6_1:28066999-28067018 | Msa0881090:intron | 25.0% |
| !!! | ACACCTACTAGTTTTTATTA+AGG | - | chr6_1:28067005-28067024 | None:intergenic | 25.0% |
| !! | TATATATATATGGGTTTGCT+AGG | - | chr6_1:28067030-28067049 | None:intergenic | 25.0% |
| ! | CAATGCAGAAAAACAAAATT+AGG | - | chr6_1:28067139-28067158 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr6_1:28067460-28067479 | Msa0881090:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr6_1:28067461-28067480 | Msa0881090:intron | 25.0% |
| ! | AATCCTCTCCTTTATATATA+GGG | - | chr6_1:28067595-28067614 | None:intergenic | 25.0% |
| ! | TTCTTTGGTATCTATGAAAT+CGG | + | chr6_1:28067613-28067632 | Msa0881090:intron | 25.0% |
| ! | ATTTAAACACAACTCACTTA+AGG | - | chr6_1:28067792-28067811 | None:intergenic | 25.0% |
| !!! | TGTTTGTTGTTGAGAAAAAT+TGG | - | chr6_1:28067947-28067966 | None:intergenic | 25.0% |
| !! | CAGATAAGATATTGATTAGT+CGG | - | chr6_1:28067985-28068004 | None:intergenic | 25.0% |
| ! | GTTTAAGCCACTTAATATAA+CGG | - | chr6_1:28068146-28068165 | None:intergenic | 25.0% |
| ! | AAATTTCAATGATACCATGT+TGG | + | chr6_1:28068503-28068522 | Msa0881090:CDS | 25.0% |
| !! | ATTAGGATTTAAGCTTTTAG+AGG | + | chr6_1:28068692-28068711 | Msa0881090:three_prime_UTR | 25.0% |
| ! | ACAGTCAAATTCAATACAAT+TGG | - | chr6_1:28068754-28068773 | None:intergenic | 25.0% |
| GAAGAAGAATTTAAAGGGAT+GGG | - | chr6_1:28063324-28063343 | None:intergenic | 30.0% | |
| TGAAGAAGAATTTAAAGGGA+TGG | - | chr6_1:28063325-28063344 | None:intergenic | 30.0% | |
| TGGGTGAAGAAGAATTTAAA+GGG | - | chr6_1:28063329-28063348 | None:intergenic | 30.0% | |
| TTGGGTGAAGAAGAATTTAA+AGG | - | chr6_1:28063330-28063349 | None:intergenic | 30.0% | |
| AGAGAGGAAATAAACTATCA+AGG | - | chr6_1:28063664-28063683 | None:intergenic | 30.0% | |
| AAAAAATGTTACCATCGATC+AGG | + | chr6_1:28063753-28063772 | Msa0881090:intron | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr6_1:28064259-28064278 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr6_1:28064260-28064279 | Msa0881090:intron | 30.0% |
| GAGCTTGATGTTAAAATTTC+AGG | + | chr6_1:28064349-28064368 | Msa0881090:intron | 30.0% | |
| ! | ATCTAGCAGCATTGAAATAT+TGG | + | chr6_1:28064410-28064429 | Msa0881090:CDS | 30.0% |
| ! | TCTAGCAGCATTGAAATATT+GGG | + | chr6_1:28064411-28064430 | Msa0881090:CDS | 30.0% |
| AGTATATTGGATCCTTAAGA+AGG | + | chr6_1:28064600-28064619 | Msa0881090:CDS | 30.0% | |
| GATTAATACTCACCTTCTTA+AGG | - | chr6_1:28064615-28064634 | None:intergenic | 30.0% | |
| AAAAATTGCAGAAAAAGCAG+TGG | + | chr6_1:28064707-28064726 | Msa0881090:intron | 30.0% | |
| ACTGTACATACCAAACAAAA+AGG | + | chr6_1:28064919-28064938 | Msa0881090:intron | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | - | chr6_1:28064932-28064951 | None:intergenic | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | + | chr6_1:28065143-28065162 | Msa0881090:intron | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | - | chr6_1:28065152-28065171 | None:intergenic | 30.0% |
| ! | TTTTACTCAATTACTCTCTC+CGG | + | chr6_1:28065379-28065398 | Msa0881090:intron | 30.0% |
| ! | GTTTTGCTTATAATAGTGAC+CGG | - | chr6_1:28065401-28065420 | None:intergenic | 30.0% |
| !! | AAATTGATTTTTACTCCCTC+TGG | - | chr6_1:28065532-28065551 | None:intergenic | 30.0% |
| ! | GATGATGTCTAGAACATTAA+TGG | - | chr6_1:28065577-28065596 | None:intergenic | 30.0% |
| ! | TGTTCTAGACATCATCATAA+CGG | + | chr6_1:28065581-28065600 | Msa0881090:intron | 30.0% |
| GGCAATAAGTATCTTTATCT+CGG | + | chr6_1:28065635-28065654 | Msa0881090:CDS | 30.0% | |
| TATCTTTATCTCGGAACATA+TGG | + | chr6_1:28065644-28065663 | Msa0881090:CDS | 30.0% | |
| TGTACGTATAAATGATCGTA+TGG | + | chr6_1:28065770-28065789 | Msa0881090:intron | 30.0% | |
| ! | AATTGAATGGCACTTTTCTA+AGG | - | chr6_1:28065967-28065986 | None:intergenic | 30.0% |
| CTATGGAGTAATAACTGAAT+TGG | - | chr6_1:28066009-28066028 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr6_1:28066183-28066202 | Msa0881090:intron | 30.0% | |
| !!! | TTCTCTTGCTATTTTTTTCG+TGG | - | chr6_1:28066376-28066395 | None:intergenic | 30.0% |
| ! | ACACCCACTAATTTTTATGT+GGG | + | chr6_1:28066765-28066784 | Msa0881090:intron | 30.0% |
| ACTCCCACATAAAAATTAGT+GGG | - | chr6_1:28066771-28066790 | None:intergenic | 30.0% | |
| AAGTAGTTAAATACACCCTA+AGG | - | chr6_1:28066810-28066829 | None:intergenic | 30.0% | |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | chr6_1:28066851-28066870 | Msa0881090:intron | 30.0% |
| GTATTATAGCAAATGCCTAT+AGG | + | chr6_1:28066876-28066895 | Msa0881090:intron | 30.0% | |
| !! | TTCAAGGTCGCTATTTTATA+GGG | - | chr6_1:28067078-28067097 | None:intergenic | 30.0% |
| !! | TTTCAAGGTCGCTATTTTAT+AGG | - | chr6_1:28067079-28067098 | None:intergenic | 30.0% |
| CAAGATTAGAACACTATGAA+AGG | - | chr6_1:28067398-28067417 | None:intergenic | 30.0% | |
| ! | CACAAGGTCTCTATTTTATA+AGG | + | chr6_1:28067552-28067571 | Msa0881090:intron | 30.0% |
| TAACCCTATATATAAAGGAG+AGG | + | chr6_1:28067589-28067608 | Msa0881090:intron | 30.0% | |
| GAATCCTCTCCTTTATATAT+AGG | - | chr6_1:28067596-28067615 | None:intergenic | 30.0% | |
| ATATAAAGGAGAGGATTCTT+TGG | + | chr6_1:28067598-28067617 | Msa0881090:intron | 30.0% | |
| TAATATGCATGGGTGTATAT+TGG | + | chr6_1:28067764-28067783 | Msa0881090:intron | 30.0% | |
| ! | TCATCGTTGCTATTATTGTT+GGG | - | chr6_1:28068168-28068187 | None:intergenic | 30.0% |
| GTCATCTAAGTTTAAGGAAA+TGG | + | chr6_1:28068377-28068396 | Msa0881090:CDS | 30.0% | |
| ATCTAAGTTTAAGGAAATGG+TGG | + | chr6_1:28068380-28068399 | Msa0881090:CDS | 30.0% | |
| GCTCAATTCAAAAGAGAATT+TGG | + | chr6_1:28068587-28068606 | Msa0881090:exon | 30.0% | |
| !!! | TGTTTGCTTCTGCGATTTTT+TGG | - | chr6_1:28063483-28063502 | None:intergenic | 35.0% |
| ! | TAGTATGTCGATTGTTGATC+CGG | - | chr6_1:28063712-28063731 | None:intergenic | 35.0% |
| TCGATATGAAGCTCATTTGT+GGG | + | chr6_1:28063790-28063809 | Msa0881090:CDS | 35.0% | |
| ATTTGTGGGACAAGAATTGT+TGG | + | chr6_1:28063804-28063823 | Msa0881090:CDS | 35.0% | |
| AATGAGTCTCAGAACAAGAA+AGG | + | chr6_1:28063827-28063846 | Msa0881090:CDS | 35.0% | |
| ATGAGTCTCAGAACAAGAAA+GGG | + | chr6_1:28063828-28063847 | Msa0881090:CDS | 35.0% | |
| CATGTGGCATTTCAATTCTA+TGG | + | chr6_1:28063939-28063958 | Msa0881090:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr6_1:28064026-28064045 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr6_1:28064125-28064144 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr6_1:28064129-28064148 | None:intergenic | 35.0% |
| ! | TTCAGGTGCTTATGATAATG+AGG | + | chr6_1:28064366-28064385 | Msa0881090:intron | 35.0% |
| ! | TGCTTATGATAATGAGGAGA+CGG | + | chr6_1:28064372-28064391 | Msa0881090:CDS | 35.0% |
| ! | CTAGCAGCATTGAAATATTG+GGG | + | chr6_1:28064412-28064431 | Msa0881090:CDS | 35.0% |
| TTGAAATGGAGAGTCAATCA+AGG | + | chr6_1:28064573-28064592 | Msa0881090:CDS | 35.0% | |
| TGAAATGGAGAGTCAATCAA+GGG | + | chr6_1:28064574-28064593 | Msa0881090:CDS | 35.0% | |
| ! | GAAAAAGCAGTGGTTTTTCA+CGG | + | chr6_1:28064717-28064736 | Msa0881090:intron | 35.0% |
| ! | AAAAAGCAGTGGTTTTTCAC+GGG | + | chr6_1:28064718-28064737 | Msa0881090:CDS | 35.0% |
| ACTACTGTGTTCATATGCAT+TGG | + | chr6_1:28065006-28065025 | Msa0881090:intron | 35.0% | |
| CTTGGGACCGAAAATTATAA+AGG | + | chr6_1:28065142-28065161 | Msa0881090:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr6_1:28065211-28065230 | Msa0881090:intron | 35.0% |
| TTGCTTATAATAGTGACCAG+AGG | + | chr6_1:28065513-28065532 | Msa0881090:intron | 35.0% | |
| TGCTTATAATAGTGACCAGA+GGG | + | chr6_1:28065514-28065533 | Msa0881090:intron | 35.0% | |
| TCAGTTATTACTCCATAGTG+TGG | + | chr6_1:28066011-28066030 | Msa0881090:intron | 35.0% | |
| TCACATGTACTCACATTCAA+TGG | + | chr6_1:28066068-28066087 | Msa0881090:intron | 35.0% | |
| CACATGTACTCACATTCAAT+GGG | + | chr6_1:28066069-28066088 | Msa0881090:intron | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | - | chr6_1:28066154-28066173 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | + | chr6_1:28066322-28066341 | Msa0881090:intron | 35.0% | |
| ! | TTCCTTATAATTTGAGACGG+AGG | - | chr6_1:28066418-28066437 | None:intergenic | 35.0% |
| CCGTCCCATATTATAAGAAA+GGG | - | chr6_1:28066701-28066720 | None:intergenic | 35.0% | |
| CCCTTTCTTATAATATGGGA+CGG | + | chr6_1:28066698-28066717 | Msa0881090:intron | 35.0% | |
| TCCGTCCCATATTATAAGAA+AGG | - | chr6_1:28066702-28066721 | None:intergenic | 35.0% | |
| TTTCTTATAATATGGGACGG+AGG | + | chr6_1:28066701-28066720 | Msa0881090:intron | 35.0% | |
| TTCTTATAATATGGGACGGA+GGG | + | chr6_1:28066702-28066721 | Msa0881090:intron | 35.0% | |
| ! | CACACCCACTAATTTTTATG+TGG | + | chr6_1:28066764-28066783 | Msa0881090:intron | 35.0% |
| CACTCCCACATAAAAATTAG+TGG | - | chr6_1:28066772-28066791 | None:intergenic | 35.0% | |
| ! | TTTTAGCAAGCTACACCTTA+GGG | + | chr6_1:28066792-28066811 | Msa0881090:intron | 35.0% |
| !!! | ACGCCCACTTATTTTTTAGA+AGG | - | chr6_1:28066858-28066877 | None:intergenic | 35.0% |
| AAGTAGGGACTAAACTTTCA+AGG | - | chr6_1:28067094-28067113 | None:intergenic | 35.0% | |
| CAACAACAAACAGCTAAATC+TGG | + | chr6_1:28067955-28067974 | Msa0881090:intron | 35.0% | |
| ATCTCAGCCGTTATATTAAG+TGG | + | chr6_1:28068136-28068155 | Msa0881090:CDS | 35.0% | |
| ! | GTCATCGTTGCTATTATTGT+TGG | - | chr6_1:28068169-28068188 | None:intergenic | 35.0% |
| TTCATTAGAGTTTGAGTCGT+TGG | - | chr6_1:28068241-28068260 | None:intergenic | 35.0% | |
| CTCAAACTCTAATGAAGAAC+TGG | + | chr6_1:28068245-28068264 | Msa0881090:CDS | 35.0% | |
| TTCTATTGACGAAGCTACAT+TGG | + | chr6_1:28068305-28068324 | Msa0881090:CDS | 35.0% | |
| GCTTCAGTCATCTAAGTTTA+AGG | + | chr6_1:28068371-28068390 | Msa0881090:CDS | 35.0% | |
| ! | GTTTAAGGAAATGGTGGAAA+TGG | + | chr6_1:28068386-28068405 | Msa0881090:CDS | 35.0% |
| AAGTACGTTTGAATGTCATC+AGG | - | chr6_1:28068474-28068493 | None:intergenic | 35.0% | |
| ! | ATAATGGAACGTAGGCATAA+TGG | - | chr6_1:28068541-28068560 | None:intergenic | 35.0% |
| ! | TCAAAGTCATAATGGAACGT+AGG | - | chr6_1:28068549-28068568 | None:intergenic | 35.0% |
| ACGTTCCATTATGACTTTGA+AGG | + | chr6_1:28068549-28068568 | Msa0881090:CDS | 35.0% | |
| !! | CATAGAGCCGATTTTACAGA+CGG | + | chr6_1:28063227-28063246 | Msa0881090:five_prime_UTR | 40.0% |
| TTTGTGGCCGTCTGTAAAAT+CGG | - | chr6_1:28063237-28063256 | None:intergenic | 40.0% | |
| ACAAACAACCATCTTTCAGC+CGG | + | chr6_1:28063252-28063271 | Msa0881090:five_prime_UTR | 40.0% | |
| GGGGTTAGAAAAATTTGTGC+TGG | - | chr6_1:28063292-28063311 | None:intergenic | 40.0% | |
| !! | GAATTTAAAGGGATGGGCTA+AGG | - | chr6_1:28063318-28063337 | None:intergenic | 40.0% |
| !!! | TTCTGCGATTTTTTGGCCAT+TGG | - | chr6_1:28063476-28063495 | None:intergenic | 40.0% |
| CAATATACAGAGGAGTCACT+AGG | + | chr6_1:28063618-28063637 | Msa0881090:CDS | 40.0% | |
| AGAGGAGTCACTAGGTAATT+TGG | + | chr6_1:28063626-28063645 | Msa0881090:intron | 40.0% | |
| TGTTTATCTATCTCTCGTGC+CGG | + | chr6_1:28063690-28063709 | Msa0881090:intron | 40.0% | |
| GTCGATATGAAGCTCATTTG+TGG | + | chr6_1:28063789-28063808 | Msa0881090:CDS | 40.0% | |
| GTGGCATTTCAATTCTATGG+TGG | + | chr6_1:28063942-28063961 | Msa0881090:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr6_1:28064264-28064283 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr6_1:28064126-28064145 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr6_1:28064264-28064283 | Msa0881090:intron | 40.0% |
| ! | CAATCAAGGGAGGAGTATAT+TGG | + | chr6_1:28064587-28064606 | Msa0881090:CDS | 40.0% |
| ! | AAAAGCAGTGGTTTTTCACG+GGG | + | chr6_1:28064719-28064738 | Msa0881090:CDS | 40.0% |
| ! | CTAAATACAGAGGTGTAGCA+AGG | + | chr6_1:28064747-28064766 | Msa0881090:CDS | 40.0% |
| CACTGCAACGTAATTCTAAG+AGG | - | chr6_1:28064959-28064978 | None:intergenic | 40.0% | |
| AATTACGTTGCAGTGAACCT+TGG | + | chr6_1:28064964-28064983 | Msa0881090:intron | 40.0% | |
| ATTACGTTGCAGTGAACCTT+GGG | + | chr6_1:28064965-28064984 | Msa0881090:intron | 40.0% | |
| CTAATTTACGTTGAGTCCCA+AGG | - | chr6_1:28064984-28065003 | None:intergenic | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | chr6_1:28065212-28065231 | Msa0881090:intron | 40.0% |
| ! | CTAGACATCATCATAACGGA+AGG | + | chr6_1:28065585-28065604 | Msa0881090:intron | 40.0% |
| ! | ACATCATCATAACGGAAGGT+GGG | + | chr6_1:28065589-28065608 | Msa0881090:CDS | 40.0% |
| AAGTAGTTAAGTAGCTAGCC+AGG | + | chr6_1:28065855-28065874 | Msa0881090:intron | 40.0% | |
| ! | CAAACTGGCTCAGATAAAAC+GGG | - | chr6_1:28066139-28066158 | None:intergenic | 40.0% |
| ! | CCAAACTGGCTCAGATAAAA+CGG | - | chr6_1:28066140-28066159 | None:intergenic | 40.0% |
| GAAAATGGGTCAGATATTCC+GGG | + | chr6_1:28066323-28066342 | Msa0881090:intron | 40.0% | |
| AAACATTACTTCTTCCGTCC+CGG | - | chr6_1:28066344-28066363 | None:intergenic | 40.0% | |
| CTCCTCCGTCTCAAATTATA+AGG | + | chr6_1:28066413-28066432 | Msa0881090:intron | 40.0% | |
| !! | GTTTTAGCAAGCTACACCTT+AGG | + | chr6_1:28066791-28066810 | Msa0881090:intron | 40.0% |
| TGTACGTTAGCAACTCCTAT+AGG | - | chr6_1:28066894-28066913 | None:intergenic | 40.0% | |
| AAGTAGGGACTAAACTCACA+AGG | + | chr6_1:28067536-28067555 | Msa0881090:intron | 40.0% | |
| ATAACGGCTGAGATCGAAAT+TGG | - | chr6_1:28068130-28068149 | None:intergenic | 40.0% | |
| GTGATATTTCATTGTCCACG+AGG | - | chr6_1:28068278-28068297 | None:intergenic | 40.0% | |
| TGACTGAAGCAAAAGCTCTA+GGG | - | chr6_1:28068361-28068380 | None:intergenic | 40.0% | |
| ATGACTGAAGCAAAAGCTCT+AGG | - | chr6_1:28068362-28068381 | None:intergenic | 40.0% | |
| TTCCAATGTGTCAACAACGT+TGG | + | chr6_1:28068419-28068438 | Msa0881090:CDS | 40.0% | |
| CAGCACCTTCAAAGTCATAA+TGG | - | chr6_1:28068557-28068576 | None:intergenic | 40.0% | |
| !! | TTATGACTTTGAAGGTGCTG+AGG | + | chr6_1:28068557-28068576 | Msa0881090:CDS | 40.0% |
| GGCTGAAAGATGGTTGTTTG+TGG | - | chr6_1:28063253-28063272 | None:intergenic | 45.0% | |
| !! | AAAGGGATGGGCTAAGGAAT+GGG | - | chr6_1:28063312-28063331 | None:intergenic | 45.0% |
| !! | TAAAGGGATGGGCTAAGGAA+TGG | - | chr6_1:28063313-28063332 | None:intergenic | 45.0% |
| CTGTCACCACCAAAGCAAAA+CGG | + | chr6_1:28063552-28063571 | Msa0881090:CDS | 45.0% | |
| ! | TTTCCTCGTCCGTTTTGCTT+TGG | - | chr6_1:28063564-28063583 | None:intergenic | 45.0% |
| GTTGAGGTGGAGAAGTTCTA+GGG | - | chr6_1:28063592-28063611 | None:intergenic | 45.0% | |
| TATATTGAGCTGCGTTGAGG+TGG | - | chr6_1:28063605-28063624 | None:intergenic | 45.0% | |
| CTGTATATTGAGCTGCGTTG+AGG | - | chr6_1:28063608-28063627 | None:intergenic | 45.0% | |
| CAACGCAGCTCAATATACAG+AGG | + | chr6_1:28063608-28063627 | Msa0881090:CDS | 45.0% | |
| CTTCATATCGACCTGTCCAA+CGG | - | chr6_1:28063781-28063800 | None:intergenic | 45.0% | |
| CAGAACAAGAAAGGGAGACA+AGG | + | chr6_1:28063836-28063855 | Msa0881090:CDS | 45.0% | |
| CTGATTGTTGCAGTCTACCT+TGG | + | chr6_1:28063977-28063996 | Msa0881090:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr6_1:28064263-28064282 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr6_1:28064263-28064282 | Msa0881090:intron | 45.0% |
| AATGGAGAGTCAATCAAGGG+AGG | + | chr6_1:28064577-28064596 | Msa0881090:CDS | 45.0% | |
| !! | CGGGGAGTATCTAAATACAG+AGG | + | chr6_1:28064737-28064756 | Msa0881090:CDS | 45.0% |
| ! | GACATCATCATAACGGAAGG+TGG | + | chr6_1:28065588-28065607 | Msa0881090:intron | 45.0% |
| !!! | GCACGGATTGGCAAAGTTTT+TGG | + | chr6_1:28065614-28065633 | Msa0881090:CDS | 45.0% |
| ! | TCCATAGTGTGGCTTTGCAT+GGG | + | chr6_1:28066022-28066041 | Msa0881090:intron | 45.0% |
| ! | GGCTTTGCATGGGTTATGTA+TGG | + | chr6_1:28066032-28066051 | Msa0881090:intron | 45.0% |
| ! | CCGTTTTATCTGAGCCAGTT+TGG | + | chr6_1:28066137-28066156 | Msa0881090:intron | 45.0% |
| AGCTGTAGCTGCTTCTTCTT+GGG | - | chr6_1:28068064-28068083 | None:intergenic | 45.0% | |
| AAGCTGTAGCTGCTTCTTCT+TGG | - | chr6_1:28068065-28068084 | None:intergenic | 45.0% | |
| AGCAGCTACAGCTTATGACA+TGG | + | chr6_1:28068071-28068090 | Msa0881090:CDS | 45.0% | |
| AGAACTGGAATTTAGCCTCG+TGG | + | chr6_1:28068260-28068279 | Msa0881090:CDS | 45.0% | |
| CTCCAACGTTGTTGACACAT+TGG | - | chr6_1:28068424-28068443 | None:intergenic | 45.0% | |
| ! | ACGTAGGCATAATGGAGTTG+AGG | - | chr6_1:28068533-28068552 | None:intergenic | 45.0% |
| !! | ATATTTATATATAGTATTAA+TGG | - | chr6_1:28063409-28063428 | None:intergenic | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | chr6_1:28065174-28065193 | None:intergenic | 5.0% |
| !!! | TTATAAGTAATTTTTTTTAT+AGG | + | chr6_1:28067491-28067510 | Msa0881090:intron | 5.0% |
| !!! | TATAAGTAATTTTTTTTATA+GGG | + | chr6_1:28067492-28067511 | Msa0881090:intron | 5.0% |
| !!! | AATTAAATTTTTATATAACA+CGG | - | chr6_1:28067831-28067850 | None:intergenic | 5.0% |
| TGTGATAGCCGGCTGAAAGA+TGG | - | chr6_1:28063263-28063282 | None:intergenic | 50.0% | |
| GCTGGCAGAATTGTGATAGC+CGG | - | chr6_1:28063274-28063293 | None:intergenic | 50.0% | |
| !! | AAGGGATGGGCTAAGGAATG+GGG | - | chr6_1:28063311-28063330 | None:intergenic | 50.0% |
| CGTTGAGGTGGAGAAGTTCT+AGG | - | chr6_1:28063593-28063612 | None:intergenic | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | - | chr6_1:28065227-28065246 | None:intergenic | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | - | chr6_1:28065228-28065247 | None:intergenic | 50.0% | |
| ! | TCATCATAACGGAAGGTGGG+AGG | + | chr6_1:28065592-28065611 | Msa0881090:CDS | 50.0% |
| ! | CTCCATAGTGTGGCTTTGCA+TGG | + | chr6_1:28066021-28066040 | Msa0881090:intron | 50.0% |
| ACCCATGCAAAGCCACACTA+TGG | - | chr6_1:28066026-28066045 | None:intergenic | 50.0% | |
| GGACGGAGGGAGTAGTTTAT+TGG | - | chr6_1:28066118-28066137 | None:intergenic | 50.0% | |
| CTCAGATAAAACGGGACGGA+GGG | - | chr6_1:28066131-28066150 | None:intergenic | 50.0% | |
| CTGGCTCAGATAAAACGGGA+CGG | - | chr6_1:28066135-28066154 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | + | chr6_1:28066327-28066346 | Msa0881090:intron | 50.0% | |
| !! | CAAAAGCTCTAGGGCTGATG+TGG | - | chr6_1:28068352-28068371 | None:intergenic | 50.0% |
| GGAGTTGAGGTCTTCCAACA+TGG | - | chr6_1:28068520-28068539 | None:intergenic | 50.0% | |
| ! | CCTCGTCCGTTTTGCTTTGG+TGG | - | chr6_1:28063561-28063580 | None:intergenic | 55.0% |
| CCACCAAAGCAAAACGGACG+AGG | + | chr6_1:28063558-28063577 | Msa0881090:CDS | 55.0% | |
| ! | TACCATCGATCAGGCACCGT+TGG | + | chr6_1:28063762-28063781 | Msa0881090:intron | 55.0% |
| ! | ATAACGGAAGGTGGGAGGCA+CGG | + | chr6_1:28065597-28065616 | Msa0881090:CDS | 55.0% |
| GCTCAGATAAAACGGGACGG+AGG | - | chr6_1:28066132-28066151 | None:intergenic | 55.0% | |
| GATGTGGCACTAGTTGGTCG+AGG | - | chr6_1:28068336-28068355 | None:intergenic | 55.0% | |
| AGGGCTGATGTGGCACTAGT+TGG | - | chr6_1:28068342-28068361 | None:intergenic | 55.0% | |
| GTCCAACGGTGCCTGATCGA+TGG | - | chr6_1:28063767-28063786 | None:intergenic | 60.0% | |
| ! | TCGATCAGGCACCGTTGGAC+AGG | + | chr6_1:28063767-28063786 | Msa0881090:intron | 60.0% |
| ACATTGGCCCAAGTCGGGAC+CGG | + | chr6_1:28065217-28065236 | Msa0881090:intron | 60.0% | |
| ! | GGAAGGTGGGAGGCACGGAT+TGG | + | chr6_1:28065602-28065621 | Msa0881090:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 28063111 | 28068828 | 28063111 | ID=Msa0881090;Name=Msa0881090 |
| chr6_1 | mRNA | 28063111 | 28068828 | 28063111 | ID=Msa0881090-mRNA-1;Parent=Msa0881090;Name=Msa0881090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=365|0.83|1|1|1|1|7|241|355 |
| chr6_1 | exon | 28063111 | 28063639 | 28063111 | ID=Msa0881090-mRNA-1:exon:6978;Parent=Msa0881090-mRNA-1 |
| chr6_1 | exon | 28063775 | 28063857 | 28063775 | ID=Msa0881090-mRNA-1:exon:6979;Parent=Msa0881090-mRNA-1 |
| chr6_1 | exon | 28064371 | 28064459 | 28064371 | ID=Msa0881090-mRNA-1:exon:6980;Parent=Msa0881090-mRNA-1 |
| chr6_1 | exon | 28064548 | 28064621 | 28064548 | ID=Msa0881090-mRNA-1:exon:6981;Parent=Msa0881090-mRNA-1 |
| chr6_1 | exon | 28064718 | 28064768 | 28064718 | ID=Msa0881090-mRNA-1:exon:6982;Parent=Msa0881090-mRNA-1 |
| chr6_1 | exon | 28065589 | 28065665 | 28065589 | ID=Msa0881090-mRNA-1:exon:6983;Parent=Msa0881090-mRNA-1 |
| chr6_1 | exon | 28068058 | 28068828 | 28068058 | ID=Msa0881090-mRNA-1:exon:6984;Parent=Msa0881090-mRNA-1 |
| chr6_1 | five_prime_UTR | 28063111 | 28063475 | 28063111 | ID=Msa0881090-mRNA-1:five_prime_utr;Parent=Msa0881090-mRNA-1 |
| chr6_1 | CDS | 28063476 | 28063639 | 28063476 | ID=Msa0881090-mRNA-1:cds;Parent=Msa0881090-mRNA-1 |
| chr6_1 | CDS | 28063775 | 28063857 | 28063775 | ID=Msa0881090-mRNA-1:cds;Parent=Msa0881090-mRNA-1 |
| chr6_1 | CDS | 28064371 | 28064459 | 28064371 | ID=Msa0881090-mRNA-1:cds;Parent=Msa0881090-mRNA-1 |
| chr6_1 | CDS | 28064548 | 28064621 | 28064548 | ID=Msa0881090-mRNA-1:cds;Parent=Msa0881090-mRNA-1 |
| chr6_1 | CDS | 28064718 | 28064768 | 28064718 | ID=Msa0881090-mRNA-1:cds;Parent=Msa0881090-mRNA-1 |
| chr6_1 | CDS | 28065589 | 28065665 | 28065589 | ID=Msa0881090-mRNA-1:cds;Parent=Msa0881090-mRNA-1 |
| chr6_1 | CDS | 28068058 | 28068587 | 28068058 | ID=Msa0881090-mRNA-1:cds;Parent=Msa0881090-mRNA-1 |
| chr6_1 | three_prime_UTR | 28068588 | 28068828 | 28068588 | ID=Msa0881090-mRNA-1:three_prime_utr;Parent=Msa0881090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
