AlfalfaGEDB | Msa1318170

M. sativa cultivar zhongmu-4 / Msa1318170

KEGG: K15398
GO: GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016713 GO:0018685 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0055114 GO:0071704
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1318170	XP_003627566.1	99.074	540	5	0	1	540	1	540	0.0	1109

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1318170	sp\|O80823\|C86A8_ARATH	76.111	540	122	3	1	539	1	534	0.0	857

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1318170	G7LBQ4	99.074	540	5	0	1	540	1	540	0.0	1109

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005890	Msa1318170	0.806119	9.603596e-50	-8.615850e-47
Msa0267110	Msa1318170	0.807537	4.815201e-50	-8.615850e-47
Msa0390970	Msa1318170	0.800085	1.700234e-48	-8.615850e-47
Msa0495300	Msa1318170	0.805041	1.616134e-49	-8.615850e-47
Msa0527820	Msa1318170	0.818153	2.274288e-52	-8.615850e-47
Msa0571290	Msa1318170	0.806338	8.635940e-50	-8.615850e-47
Msa0582480	Msa1318170	0.809755	1.617731e-50	-8.615850e-47
Msa0586220	Msa1318170	0.817883	2.617778e-52	-8.615850e-47
Msa0626450	Msa1318170	0.800877	1.172916e-48	-8.615850e-47
Msa0664090	Msa1318170	0.819189	1.323282e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1318170	MtrunA17_Chr8g0348751	99.074	540	5	0	1	540	1	540	0.0	1109
Msa1318170	MtrunA17_Chr8g0387001	76.054	522	120	2	1	522	1	517	0.0	838
Msa1318170	MtrunA17_Chr5g0429651	62.698	504	171	4	16	512	17	510	0.0	655
Msa1318170	MtrunA17_Chr3g0104351	63.095	504	167	6	19	513	26	519	0.0	647
Msa1318170	MtrunA17_Chr4g0038271	46.718	518	260	8	1	511	53	561	7.24e-158	462
Msa1318170	MtrunA17_Chr1g0164321	47.177	496	247	8	24	510	58	547	2.58e-152	447
Msa1318170	MtrunA17_Chr4g0067191	39.354	526	282	11	7	510	5	515	7.41e-126	378
Msa1318170	MtrunA17_Chr7g0255131	41.748	515	269	13	5	507	10	505	1.54e-118	359
Msa1318170	MtrunA17_Chr7g0227281	39.792	480	273	8	33	512	33	496	6.11e-118	357
Msa1318170	MtrunA17_Chr7g0260831	38.980	490	264	10	30	510	39	502	2.32e-117	356

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1318170	AT2G45970.1	76.111	540	122	3	1	539	1	534	0.0	857
Msa1318170	AT4G00360.1	74.074	540	136	3	1	539	1	537	0.0	845
Msa1318170	AT1G01600.1	74.170	542	132	4	1	539	1	537	0.0	844
Msa1318170	AT1G63710.1	71.947	524	140	3	1	522	1	519	0.0	798
Msa1318170	AT5G58860.1	63.900	518	169	4	1	510	1	508	0.0	685
Msa1318170	AT5G23190.1	47.481	516	255	9	7	515	39	545	2.84e-158	463
Msa1318170	AT5G08250.2	45.665	519	259	12	7	515	40	545	8.28e-151	444
Msa1318170	AT5G08250.1	47.166	494	238	12	32	515	3	483	1.31e-150	441
Msa1318170	AT1G13150.1	41.296	494	272	7	28	513	37	520	1.05e-126	381
Msa1318170	AT1G13140.1	39.879	494	277	7	29	513	45	527	1.16e-126	381

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Find 158 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGGGAGAGATTCAG+GGG	0.582210	8_4:+20111608	Msa1318170:CDS
AAACCCGTGGCACATGTTTG+CGG	0.504977	8_4:-20110629	None:intergenic
AAAGTCGATCCTTAATGGCT+CGG	0.573253	8_4:-20110499	None:intergenic
AAAGTGGACCGATGAGCCTT+TGG	0.373904	8_4:+20111090	Msa1318170:CDS
AAATATTGTCAAAAGTGAGT+CGG	0.641618	8_4:-20110583	None:intergenic
AAATGGGATTGCACAGATGC+AGG	0.493646	8_4:-20110240	None:intergenic
AACACTAAGGCTGTACCCTT+CGG	0.493398	8_4:+20111162	Msa1318170:CDS
AACCCGTGGCACATGTTTGC+GGG	0.399290	8_4:-20110628	None:intergenic
AACTATACAAAATGAAAAGG+AGG	0.574356	8_4:+20111594	Msa1318170:CDS
AAGATCTTCTCTTCCACCTT+TGG	0.333812	8_4:-20111019	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGCTTCTTAGCTAAAAAT+GGG	-	chr8_4:20110259-20110278	None:intergenic	30.0%
TCAGGGTTAATGTTTACAAT+AGG	+	chr8_4:20111551-20111570	Msa1318170:CDS	30.0%
CAGGGTTAATGTTTACAATA+GGG	+	chr8_4:20111552-20111571	Msa1318170:CDS	30.0%
TGTTTACAATAGGGATTTGA+AGG	+	chr8_4:20111561-20111580	Msa1318170:CDS	30.0%
GTTTACAATAGGGATTTGAA+GGG	+	chr8_4:20111562-20111581	Msa1318170:CDS	30.0%
CTTGCTTCTTAGCTAAAAAT+GGG	-	chr8_4:20110259-20110278	None:intergenic	30.0%
TCAGGGTTAATGTTTACAAT+AGG	+	chr8_4:20111551-20111570	Msa1318170:CDS	30.0%
CAGGGTTAATGTTTACAATA+GGG	+	chr8_4:20111552-20111571	Msa1318170:CDS	30.0%
TGTTTACAATAGGGATTTGA+AGG	+	chr8_4:20111561-20111580	Msa1318170:CDS	30.0%
GTTTACAATAGGGATTTGAA+GGG	+	chr8_4:20111562-20111581	Msa1318170:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	20110044	20111666	20110044	ID=Msa1318170;Name=Msa1318170
chr8_4	mRNA	20110044	20111666	20110044	ID=Msa1318170-mRNA-1;Parent=Msa1318170;Name=Msa1318170-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|540
chr8_4	exon	20110044	20111666	20110044	ID=Msa1318170-mRNA-1:exon:7334;Parent=Msa1318170-mRNA-1
chr8_4	CDS	20110044	20111666	20110044	ID=Msa1318170-mRNA-1:cds;Parent=Msa1318170-mRNA-1

Gene Sequence

>Msa1318170

ATGGAAACTTGTACGGCTCTATTACTTTTAACGGCCATAACAGCTTACTTGCTTTGGTTCACCTTCATCTCACGGTCATTGAGAGGCCCACGTGTCTGGCCACTATTGGGCAGTCTACCAGGCCTCGTTGAGAATTGTGAACGTATGCATGATTGGATCTGTGACAACCTACGCGCGTGTGGTGGCACGTACCAGACCTGCATCTGTGCAATCCCATTTTTAGCTAAGAAGCAAGGTCTCGTGACTGTCACGTGTGACCCGAGGAATTTGGAGCATATACTCAAGACCCGGTTCGACAATTACCCGAAAGGGCCTACGTGGCAAGCAGTGTTTCATGATTTGTTGGGTGATGGGATCTTTAACTCTGATGGTAACACGTGGGTGTTCCAGCGCAAGACAGCCGCGCTGGAATTTACCACGCGTACTTTGCGCCAAGCCATGGCTAGATGGGTTAGCCGAGCCATTAAGGATCGACTTTGCACGATTTTGAAGAAAGCTGAGGTGCAAGGTGAGCCGGTGGATCTACAAGATGTGATGCTCCGACTCACTTTTGACAATATTTGTGGTTTGGCTTTTGGAAGAGACCCGCAAACATGTGCCACGGGTTTGCCTGAAAATGGTTTTGCAGCCGCTTTTGATCGAGCCACTGAAGCCACGCTTCAGCGGTTTATATTACCTGAGATGATATGGAAGGTGAAGAAATGGCTTGGGCTTGGTATGGAAGTTGGCTTGAGTCGAAGCCTTGCTTTTGTGGACCAACATTTGTCAAGTGTGATTGAGAAGCGCAAAGTGGAATTGCTGAGTCAGCAAAAAGATGGGTCCCTTCTTCATGATGACTTGCTGACTAGGTTTATGAGGAAGAAAGAATCCTATTCGGACAAGTTTCTTCAACACGTGGCGTTGAACTTCATCCTAGCTGGACGTGACACATCATCGGTTGCACTGAGCTGGTTTTTTTGGTTGGTGATTCAGAATCCAAAGGTGGAAGAGAAGATCTTACATGAGATTTGCATGGTCTTGATGGAGACACGTGGTGCTGACATGGAAAAGTGGACCGATGAGCCTTTGGGATTTGAAGAAGTTGACCGTTTGGTTTATCTTAAGGCTGCCTTGTCGGAAACACTAAGGCTGTACCCTTCGGTGCCAGAGGATTCAAAGCATGTGGTGAAGGACGACGTGTTGCCGGATGGAACCTTTGTTCCGGCTGGATCATCAGTGACATATTCGATATATTCCGCAGGGAGGTTGAAGTCTACGTGGGGTGAGGATTGCATGGAGTTCAGGCCAGAGAGGTGGTTGTCATTGGATGGGACAACGTTCATCATGCATGACTCTTTCAAGTTTGTTGCATTCAATGCTGGTCCAAGAATATGTTTGGGGAAGGACCTGGCTTACCTTCAGATGAAGTCAATTGCTGCTGCTGTGCTTCTCCGTCATCGCCTTGCGGTGGTTCCTGGCCACCGGGTGGAGCAAAAGATGTCACTCACCTTGTTCATGAAAAATGGTCTCAGGGTTAATGTTTACAATAGGGATTTGAAGGGTGTTTTTGCAACTATACAAAATGAAAAGGAGGGAGAGATTCAGGGGAAAGTGTTGAATGATTTGAAATGCAATGGAACTTAG

Protein sequence

>Msa1318170

METCTALLLLTAITAYLLWFTFISRSLRGPRVWPLLGSLPGLVENCERMHDWICDNLRACGGTYQTCICAIPFLAKKQGLVTVTCDPRNLEHILKTRFDNYPKGPTWQAVFHDLLGDGIFNSDGNTWVFQRKTAALEFTTRTLRQAMARWVSRAIKDRLCTILKKAEVQGEPVDLQDVMLRLTFDNICGLAFGRDPQTCATGLPENGFAAAFDRATEATLQRFILPEMIWKVKKWLGLGMEVGLSRSLAFVDQHLSSVIEKRKVELLSQQKDGSLLHDDLLTRFMRKKESYSDKFLQHVALNFILAGRDTSSVALSWFFWLVIQNPKVEEKILHEICMVLMETRGADMEKWTDEPLGFEEVDRLVYLKAALSETLRLYPSVPEDSKHVVKDDVLPDGTFVPAGSSVTYSIYSAGRLKSTWGEDCMEFRPERWLSLDGTTFIMHDSFKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLAVVPGHRVEQKMSLTLFMKNGLRVNVYNRDLKGVFATIQNEKEGEIQGKVLNDLKCNGT*