AlfalfaGEDB | Msa1237760

M. sativa cultivar zhongmu-4 / Msa1237760

KEGG: K13508
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010143 GO:0012505 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0090447 GO:1901576
PFAM: PF12710.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1237760	XP_003627569.1	99.406	505	3	0	1	505	1	505	0.0	1012

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1237760	sp\|Q9LMM0\|GPAT4_ARATH	80.396	505	93	2	1	504	1	500	0.0	814

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0385400	Msa1237760	0.800012	1.759478e-48	-8.615850e-47
Msa0490440	Msa1237760	0.801400	9.166741e-49	-8.615850e-47
Msa0498090	Msa1237760	0.800284	1.548837e-48	-8.615850e-47
Msa0982720	Msa1237760	0.801874	7.329669e-49	-8.615850e-47
Msa1177970	Msa1237760	0.969544	2.805047e-130	-8.615850e-47
Msa1211930	Msa1237760	0.805147	1.536104e-49	-8.615850e-47
Msa1237760	Msa1278780	0.961296	1.545652e-119	-8.615850e-47
Msa1237760	Msa1318190	0.943746	6.889440e-103	-8.615850e-47
Msa1237760	Msa1347400	0.804294	2.314399e-49	-8.615850e-47
Msa1237760	Msa1386820	0.800238	1.583217e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1237760	MtrunA17_Chr8g0348781	99.406	505	3	0	1	505	1	505	0.0	1012
Msa1237760	MtrunA17_Chr7g0241831	62.195	492	181	4	8	499	7	493	0.0	645
Msa1237760	MtrunA17_Chr4g0005991	62.322	491	178	5	10	499	7	491	0.0	622
Msa1237760	MtrunA17_Chr1g0170421	51.521	493	229	4	9	497	40	526	0.0	526
Msa1237760	MtrunA17_Chr5g0443341	45.079	508	260	8	3	505	44	537	1.27e-149	438
Msa1237760	MtrunA17_Chr5g0435581	46.960	477	243	5	27	498	2	473	1.08e-145	427
Msa1237760	MtrunA17_Chr3g0096481	44.000	500	252	10	9	498	45	526	6.56e-139	410
Msa1237760	MtrunA17_Chr5g0425071	42.387	486	258	8	18	495	8	479	5.82e-120	361
Msa1237760	MtrunA17_Chr1g0194391	42.050	478	258	8	27	497	64	529	4.95e-119	360
Msa1237760	MtrunA17_Chr3g0096591	49.455	275	131	3	227	497	1	271	6.22e-92	281

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1237760	AT1G01610.1	80.396	505	93	2	1	504	1	500	0.0	814
Msa1237760	AT4G00400.1	79.802	505	97	1	1	505	1	500	0.0	806
Msa1237760	AT2G38110.1	63.600	500	173	5	1	497	1	494	0.0	631
Msa1237760	AT3G11430.1	46.748	492	249	6	13	500	2	484	8.20e-148	433
Msa1237760	AT5G06090.1	44.919	492	247	8	21	500	3	482	1.96e-137	406
Msa1237760	AT1G06520.1	44.242	495	250	11	21	497	98	584	2.83e-136	406
Msa1237760	AT4G01950.1	39.921	506	261	12	17	498	32	518	9.68e-110	336
Msa1237760	AT4G01950.2	39.921	506	261	12	17	498	60	546	1.90e-109	336
Msa1237760	AT1G02390.1	38.538	506	291	8	6	498	30	528	2.96e-106	327
Msa1237760	AT3G11325.2	35.281	462	202	5	37	498	9	373	3.11e-86	271

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Find 176 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAAGTATTTGTTGCT+TGG	0.390588	8_2:+17331648	Msa1237760:CDS
AAATCACCAACAAGCACACC+AGG	0.539118	8_2:-17328165	None:intergenic
AAATGAGAAGCGTGCCATCA+AGG	0.537412	8_2:-17327457	None:intergenic
AACGCATCCACCATCACCGT+CGG	0.650598	8_2:-17328051	None:intergenic
AAGAAACCTGGTGTGCTTGT+TGG	0.508793	8_2:+17328159	Msa1237760:CDS
AAGCGATGATAACTAACGGA+AGG	0.588521	8_2:-17327559	None:intergenic
AAGCGTGCCATCAAGGTCAG+CGG	0.652711	8_2:-17327450	None:intergenic
AAGCTACGTTTCGGTTTCGG+CGG	0.657200	8_2:-17327368	None:intergenic
AAGGGAAAGACAAAGAAGTG+AGG	0.603404	8_2:-17332030	None:intergenic
AAGGTGATGATGGCGTTGAG+TGG	0.601310	8_2:-17330943	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATAAGCGATGATAACTAA+CGG	-	chr8_2:17327566-17327585	None:intergenic	30.0%
TGTATTACTGTTTGTCATTG+CGG	+	chr8_2:17327913-17327932	Msa1237760:intron	30.0%
AGGTGTTTGATAAGTGTAAA+CGG	+	chr8_2:17328007-17328026	Msa1237760:CDS	30.0%
TGCAAATAGACATGAAATCA+TGG	-	chr8_2:17328263-17328282	None:intergenic	30.0%
TGATTTCATGTCTATTTGCA+AGG	+	chr8_2:17328263-17328282	Msa1237760:CDS	30.0%
CATTTGATTGAATGCATGTT+CGG	+	chr8_2:17328618-17328637	Msa1237760:intron	30.0%
GTAAAACGTTATGCTAATGT+CGG	+	chr8_2:17328982-17329001	Msa1237760:intron	30.0%
TACCCAAGTTATTTAACCTA+TGG	+	chr8_2:17329033-17329052	Msa1237760:intron	30.0%
GTACCATAGGTTAAATAACT+TGG	-	chr8_2:17329039-17329058	None:intergenic	30.0%
CCTATGGTACTATCAATTTA+TGG	+	chr8_2:17329049-17329068	Msa1237760:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	17327307	17332362	17327307	ID=Msa1237760;Name=Msa1237760
chr8_2	mRNA	17327307	17332362	17327307	ID=Msa1237760-mRNA-1;Parent=Msa1237760;Name=Msa1237760-mRNA-1;_AED=0.02;_eAED=0.02;_QI=55\|1\|1\|1\|1\|1\|3\|646\|505
chr8_2	exon	17327307	17327687	17327307	ID=Msa1237760-mRNA-1:exon:6576;Parent=Msa1237760-mRNA-1
chr8_2	exon	17327972	17328284	17327972	ID=Msa1237760-mRNA-1:exon:6577;Parent=Msa1237760-mRNA-1
chr8_2	exon	17330838	17332362	17330838	ID=Msa1237760-mRNA-1:exon:6578;Parent=Msa1237760-mRNA-1
chr8_2	five_prime_UTR	17327307	17327361	17327307	ID=Msa1237760-mRNA-1:five_prime_utr;Parent=Msa1237760-mRNA-1
chr8_2	CDS	17327362	17327687	17327362	ID=Msa1237760-mRNA-1:cds;Parent=Msa1237760-mRNA-1
chr8_2	CDS	17327972	17328284	17327972	ID=Msa1237760-mRNA-1:cds;Parent=Msa1237760-mRNA-1
chr8_2	CDS	17330838	17331716	17330838	ID=Msa1237760-mRNA-1:cds;Parent=Msa1237760-mRNA-1
chr8_2	three_prime_UTR	17331717	17332362	17331717	ID=Msa1237760-mRNA-1:three_prime_utr;Parent=Msa1237760-mRNA-1

Gene Sequence

>Msa1237760

ATGTCACCGCCGAAACCGAAACGTAGCTTCCCTCCGATATCGGAATGCAACGGAAAAACCTCCTCGTCTTCGCCGCGTGAATCTGTGGCCGCTGACCTTGATGGCACGCTTCTCATTTCGAGAAGCTCTTTTCCTTACTTCATGCTCGTCGCTGTTGAAGCTGGCAGCCTCCTCCGTGGCTTCATCCTTCTCCTCTCCCTTCCGTTAGTTATCATCGCTTATCTCTTCATTTCTGAAGCTCTCGGTATTCAGATACTTATCTTCATCTCCTTCGCCGGTCTCAAAGTTCGTGATATTGAGCTTGCTTCACGCGCCGTTCTTCCAAGGTTTTATGCTGCGGATGTACGGAGAGAGAGTTTCGAGGTGTTTGATAAGTGTAAACGGAAGGTAGTGGTGACGGCGAATCCGACGGTGATGGTGGATGCGTTTGTGAAGGATTATCTCGGCGGGGATAAGGTTTTAGGAACGGAAATCGAGGTGAATCCGAAGACGAAGAAGGCGACTGGATTTGTGAAGAAACCTGGTGTGCTTGTTGGTGATTTGAAGCGTTTGGCGGTTGTGAAAGAGTTTGGTGATGATGTGCCTGATGTTGGACTTGGAGATCGGAAAACTGACCATGATTTCATGTCTATTTGCAAGGAAGGTTACATGGTGCCACCAAGCAAATCAGCAAAACCAGTCCCACTAGAGCGTCTCAAAAGCCGACTCATCTTCCACGACGGTCGCTTTGTACAGCGTCCAGACCCACTCAACGCCATCATCACCTTCGCATGGCTCCCCTTTGGCTTCATCCTCTCCATCTTCAGAGTCTACTTCAACCTCCCTCTCCCTGAACGCATTGTCCGCTACACCTACGAATTACTTGGCATCAAGCTCGTAATCCGTGGCAACCGCCCTCCACCACCATCACGAGGAACCCCCGGCAACCTCTACGTCTGCAACCACCGCACTGCCCTTGACCCTATTGTCATCGCCATTGCCCTTGGCCGTAAAGTCTCATGTGTTACTTACAGTGTAAGCAAGCTCTCCCGGTTCCTTTCTCCCATCCCAGCAGTTGCCCTCACCCGTGACCGTGCCGCAGACGCAGCCAGAATCACCGAAATTCTCGAAAAGGGTGATCTTGTTGTGTGTCCAGAAGGCACAACTTGTCGTGAACCGTTCTTGCTACGTTTCAGTGCTCTGTTTGCAGAACTAAGTGATAGGATTGTGCCAGTAGCTGTTGATTGTAAGCAGAACATGTTCTTTGGAACCACTGTTCGAGGAGTCAAATTCTGGGATCCTTATTTCTTCTTCATGAATCCTAGGCCTGTTTATGAGATTAATTTCCTTGACCGGTTACCGGAAGAGATGTCTGTCAAGGCTGGTGGGAAATCTTCCATTGAGGTTGCTAATCATGTGCAGAAGGTTTTGGGTGATGTACTTGGTTTTGAGTGCACTGGATTGACAAGGAAAGACAAGTATTTGTTGCTTGGAGGAAATGATGGGAAGGTGGAGTCCATGTATGGTGCCAAAAAGTGA

Protein sequence

>Msa1237760

MSPPKPKRSFPPISECNGKTSSSSPRESVAADLDGTLLISRSSFPYFMLVAVEAGSLLRGFILLLSLPLVIIAYLFISEALGIQILIFISFAGLKVRDIELASRAVLPRFYAADVRRESFEVFDKCKRKVVVTANPTVMVDAFVKDYLGGDKVLGTEIEVNPKTKKATGFVKKPGVLVGDLKRLAVVKEFGDDVPDVGLGDRKTDHDFMSICKEGYMVPPSKSAKPVPLERLKSRLIFHDGRFVQRPDPLNAIITFAWLPFGFILSIFRVYFNLPLPERIVRYTYELLGIKLVIRGNRPPPPSRGTPGNLYVCNHRTALDPIVIAIALGRKVSCVTYSVSKLSRFLSPIPAVALTRDRAADAARITEILEKGDLVVCPEGTTCREPFLLRFSALFAELSDRIVPVAVDCKQNMFFGTTVRGVKFWDPYFFFMNPRPVYEINFLDRLPEEMSVKAGGKSSIEVANHVQKVLGDVLGFECTGLTRKDKYLLLGGNDGKVESMYGAKK*