Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490440 | XP_003601303.1 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 1.08e-124 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490440 | sp|Q9LZH5|LTPG2_ARATH | 46.324 | 136 | 63 | 3 | 43 | 169 | 32 | 166 | 2.73e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490440 | B7FFE5 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 5.17e-125 | 360 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0099300 | Msa0490440 | 0.803828 | 2.893074e-49 | -8.615850e-47 |
| Msa0104860 | Msa0490440 | -0.821133 | 4.747025e-53 | -8.615850e-47 |
| Msa0184070 | Msa0490440 | 0.838054 | 3.612275e-57 | -8.615850e-47 |
| Msa0206890 | Msa0490440 | 0.810506 | 1.114394e-50 | -8.615850e-47 |
| Msa0224700 | Msa0490440 | 0.806301 | 8.790532e-50 | -8.615850e-47 |
| Msa0369770 | Msa0490440 | 0.813930 | 1.994271e-51 | -8.615850e-47 |
| Msa0385400 | Msa0490440 | 0.836006 | 1.204724e-56 | -8.615850e-47 |
| Msa0402780 | Msa0490440 | 0.920659 | 9.665901e-88 | -8.615850e-47 |
| Msa0404840 | Msa0490440 | 0.841292 | 5.190530e-58 | -8.615850e-47 |
| Msa0415310 | Msa0490440 | 0.813990 | 1.934511e-51 | -8.615850e-47 |
| Msa0417140 | Msa0490440 | 0.800380 | 1.481050e-48 | -8.615850e-47 |
| Msa0421790 | Msa0490440 | 0.825025 | 5.869739e-54 | -8.615850e-47 |
| Msa0438990 | Msa0490440 | 0.806599 | 7.606803e-50 | -8.615850e-47 |
| Msa0439780 | Msa0490440 | 0.813291 | 2.757811e-51 | -8.615850e-47 |
| Msa0450830 | Msa0490440 | 0.822685 | 2.074860e-53 | -8.615850e-47 |
| Msa0450860 | Msa0490440 | 0.800378 | 1.482388e-48 | -8.615850e-47 |
| Msa0457750 | Msa0490440 | 0.804447 | 2.151195e-49 | -8.615850e-47 |
| Msa0463980 | Msa0490440 | 0.809049 | 2.293071e-50 | -8.615850e-47 |
| Msa0467890 | Msa0490440 | 0.857671 | 1.392210e-62 | -8.615850e-47 |
| Msa0467970 | Msa0490440 | 0.859627 | 3.628309e-63 | -8.615850e-47 |
| Msa0247340 | Msa0490440 | 0.806133 | 9.538383e-50 | -8.615850e-47 |
| Msa0290040 | Msa0490440 | 0.811269 | 7.617562e-51 | -8.615850e-47 |
| Msa0296100 | Msa0490440 | 0.814856 | 1.245187e-51 | -8.615850e-47 |
| Msa0303780 | Msa0490440 | 0.816931 | 4.287588e-52 | -8.615850e-47 |
| Msa0313550 | Msa0490440 | 0.805498 | 1.296585e-49 | -8.615850e-47 |
| Msa0334480 | Msa0490440 | 0.802018 | 6.845447e-49 | -8.615850e-47 |
| Msa0490440 | Msa0498090 | 0.802659 | 5.051082e-49 | -8.615850e-47 |
| Msa0490440 | Msa0509530 | 0.815391 | 9.468252e-52 | -8.615850e-47 |
| Msa0490440 | Msa0514280 | 0.853275 | 2.660478e-61 | -8.615850e-47 |
| Msa0490440 | Msa0522990 | 0.814817 | 1.269857e-51 | -8.615850e-47 |
| Msa0490440 | Msa0547790 | 0.804868 | 1.756478e-49 | -8.615850e-47 |
| Msa0490440 | Msa0552920 | 0.802233 | 6.184206e-49 | -8.615850e-47 |
| Msa0490440 | Msa0571070 | 0.843332 | 1.495663e-58 | -8.615850e-47 |
| Msa0490440 | Msa0602670 | 0.807330 | 5.329152e-50 | -8.615850e-47 |
| Msa0490440 | Msa0607070 | 0.807702 | 4.443536e-50 | -8.615850e-47 |
| Msa0490440 | Msa0643590 | 0.806198 | 9.243592e-50 | -8.615850e-47 |
| Msa0490440 | Msa0687740 | 0.804248 | 2.366694e-49 | -8.615850e-47 |
| Msa0490440 | Msa0706490 | 0.800841 | 1.192816e-48 | -8.615850e-47 |
| Msa0490440 | Msa0733110 | 0.848743 | 5.046749e-60 | -8.615850e-47 |
| Msa0490440 | Msa0736120 | 0.801894 | 7.259472e-49 | -8.615850e-47 |
| Msa0490440 | Msa0746640 | 0.924286 | 8.634710e-90 | -8.615850e-47 |
| Msa0490440 | Msa0811710 | 0.839013 | 2.042522e-57 | -8.615850e-47 |
| Msa0490440 | Msa0868140 | 0.803717 | 3.051499e-49 | -8.615850e-47 |
| Msa0490440 | Msa0880520 | 0.814815 | 1.271195e-51 | -8.615850e-47 |
| Msa0490440 | Msa0886880 | 0.848364 | 6.423338e-60 | -8.615850e-47 |
| Msa0490440 | Msa0905200 | 0.811816 | 5.792895e-51 | -8.615850e-47 |
| Msa0490440 | Msa0937180 | 0.800229 | 1.589720e-48 | -8.615850e-47 |
| Msa0490440 | Msa0937190 | 0.826516 | 2.598439e-54 | -8.615850e-47 |
| Msa0490440 | Msa0982720 | 0.930530 | 1.433063e-93 | -8.615850e-47 |
| Msa0490440 | Msa0988030 | 0.822420 | 2.392246e-53 | -8.615850e-47 |
| Msa0490440 | Msa1035090 | 0.800645 | 1.307806e-48 | -8.615850e-47 |
| Msa0490440 | Msa1098640 | 0.803196 | 3.912355e-49 | -8.615850e-47 |
| Msa0490440 | Msa1129920 | 0.837840 | 4.100185e-57 | -8.615850e-47 |
| Msa0490440 | Msa1206440 | 0.803588 | 3.245563e-49 | -8.615850e-47 |
| Msa0490440 | Msa1208510 | 0.832363 | 9.868520e-56 | -8.615850e-47 |
| Msa0490440 | Msa1211930 | 0.806576 | 7.691073e-50 | -8.615850e-47 |
| Msa0490440 | Msa1237760 | 0.801400 | 9.166741e-49 | -8.615850e-47 |
| Msa0490440 | Msa1262630 | 0.806280 | 8.879669e-50 | -8.615850e-47 |
| Msa0490440 | Msa1275290 | 0.839588 | 1.448535e-57 | -8.615850e-47 |
| Msa0490440 | Msa1300850 | 0.815503 | 8.939556e-52 | -8.615850e-47 |
| Msa0490440 | Msa1334690 | 0.821701 | 3.509975e-53 | -8.615850e-47 |
| Msa0490440 | Msa1347400 | 0.933167 | 2.834261e-95 | -8.615850e-47 |
| Msa0490440 | Msa1367810 | 0.808758 | 2.646633e-50 | -8.615850e-47 |
| Msa0490440 | Msa1369860 | 0.833740 | 4.481891e-56 | -8.615850e-47 |
| Msa0490440 | Msa1386820 | 0.821607 | 3.690972e-53 | -8.615850e-47 |
| Msa0490440 | Msa1437690 | 0.801242 | 9.874721e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490440 | MtrunA17_Chr3g0118471 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 9.96e-129 | 360 |
| Msa0490440 | MtrunA17_Chr5g0395001 | 38.400 | 125 | 74 | 2 | 46 | 170 | 24 | 145 | 1.03e-17 | 77.0 |
| Msa0490440 | MtrunA17_Chr1g0205201 | 40.659 | 91 | 51 | 2 | 46 | 136 | 24 | 111 | 5.59e-16 | 72.0 |
| Msa0490440 | MtrunA17_Chr2g0278981 | 40.206 | 97 | 55 | 2 | 34 | 130 | 20 | 113 | 8.58e-16 | 72.4 |
| Msa0490440 | MtrunA17_Chr5g0429901 | 33.582 | 134 | 79 | 3 | 42 | 175 | 28 | 151 | 1.53e-14 | 68.9 |
| Msa0490440 | MtrunA17_Chr2g0278971 | 37.190 | 121 | 63 | 4 | 57 | 177 | 83 | 190 | 1.64e-14 | 69.3 |
| Msa0490440 | MtrunA17_Chr7g0260061 | 36.000 | 125 | 73 | 5 | 47 | 169 | 28 | 147 | 4.52e-13 | 65.1 |
| Msa0490440 | MtrunA17_Chr1g0205181 | 37.143 | 105 | 59 | 3 | 46 | 147 | 24 | 124 | 4.14e-12 | 61.6 |
| Msa0490440 | MtrunA17_Chr1g0205191 | 36.735 | 98 | 57 | 3 | 42 | 139 | 20 | 112 | 1.81e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490440 | AT3G43720.2 | 47.015 | 134 | 63 | 3 | 43 | 169 | 32 | 164 | 3.68e-29 | 107 |
| Msa0490440 | AT3G43720.1 | 46.324 | 136 | 63 | 3 | 43 | 169 | 32 | 166 | 2.77e-28 | 105 |
| Msa0490440 | AT2G27130.1 | 43.519 | 108 | 59 | 2 | 34 | 140 | 24 | 130 | 1.24e-23 | 93.2 |
| Msa0490440 | AT3G22600.1 | 40.698 | 86 | 48 | 2 | 46 | 131 | 24 | 106 | 8.44e-16 | 72.4 |
| Msa0490440 | AT2G48130.2 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.67e-16 | 72.4 |
| Msa0490440 | AT2G48130.6 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.67e-16 | 72.4 |
| Msa0490440 | AT2G48130.4 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.67e-16 | 72.4 |
| Msa0490440 | AT2G48130.5 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.67e-16 | 72.4 |
| Msa0490440 | AT2G48130.1 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.67e-16 | 72.4 |
| Msa0490440 | AT2G48130.3 | 33.636 | 110 | 70 | 2 | 50 | 159 | 30 | 136 | 9.67e-16 | 72.4 |
| Msa0490440 | AT1G03103.1 | 35.669 | 157 | 86 | 7 | 49 | 204 | 24 | 166 | 1.44e-15 | 71.6 |
| Msa0490440 | AT5G64080.1 | 33.088 | 136 | 78 | 5 | 42 | 173 | 36 | 162 | 1.75e-14 | 68.9 |
| Msa0490440 | AT5G64080.2 | 34.848 | 132 | 77 | 5 | 42 | 173 | 36 | 158 | 2.03e-14 | 68.9 |
| Msa0490440 | AT2G13820.1 | 30.573 | 157 | 95 | 3 | 50 | 206 | 27 | 169 | 2.72e-14 | 68.2 |
| Msa0490440 | AT2G13820.3 | 30.573 | 157 | 95 | 3 | 50 | 206 | 39 | 181 | 4.52e-14 | 67.8 |
| Msa0490440 | AT4G08670.1 | 33.742 | 163 | 95 | 6 | 42 | 197 | 40 | 196 | 9.54e-14 | 67.4 |
| Msa0490440 | AT5G09370.1 | 34.711 | 121 | 69 | 3 | 50 | 170 | 28 | 138 | 2.65e-13 | 65.5 |
| Msa0490440 | AT4G14815.1 | 35.484 | 93 | 57 | 2 | 40 | 132 | 16 | 105 | 2.88e-13 | 65.1 |
| Msa0490440 | AT5G09370.3 | 33.884 | 121 | 68 | 3 | 50 | 170 | 28 | 136 | 3.01e-13 | 65.1 |
| Msa0490440 | AT2G13820.2 | 37.662 | 77 | 46 | 1 | 54 | 130 | 31 | 105 | 8.28e-13 | 63.2 |
| Msa0490440 | AT5G09370.2 | 37.931 | 87 | 49 | 2 | 60 | 146 | 38 | 119 | 1.48e-11 | 60.1 |
Find 72 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTATTACACACTTTAATT+AGG | 0.225161 | 3_4:+11984447 | Msa0490440:three_prime_UTR |
| CTTCTGGTGGCAGAATTTAA+TGG | 0.240915 | 3_4:-11981739 | None:intergenic |
| AGCCCTTCTGGAAGCAAAAT+TGG | 0.248172 | 3_4:+11984252 | Msa0490440:CDS |
| GCAGGTGTTCTTAGCCCTTC+TGG | 0.257309 | 3_4:+11984240 | Msa0490440:intron |
| AACAGCTTACACAAACAAAT+AGG | 0.265322 | 3_4:-11982201 | None:intergenic |
| GGCGCTAAAACCGCGGTTTC+CGG | 0.269928 | 3_4:-11982042 | None:intergenic |
| TATTGAGTGCTTTGCTTTAG+TGG | 0.271967 | 3_4:+11984420 | Msa0490440:three_prime_UTR |
| TTTGCATCACTCTCATTTCA+TGG | 0.285544 | 3_4:+11981979 | Msa0490440:CDS |
| ATAAATAGAGGGACTTGATT+TGG | 0.291910 | 3_4:-11981778 | None:intergenic |
| GGACTTGGGGCTAATCCTTT+TGG | 0.309513 | 3_4:-11983897 | None:intergenic |
| ACTACCGAGTTCTTCGTTCT+TGG | 0.317095 | 3_4:+11984484 | Msa0490440:three_prime_UTR |
| AAAGCACTCAATACACAAAT+AGG | 0.323137 | 3_4:-11984410 | None:intergenic |
| TATATATAATATAGTCTATT+CGG | 0.351497 | 3_4:-11984630 | None:intergenic |
| TGGAGTATCTGCTGCTGCTT+TGG | 0.352720 | 3_4:+11982005 | Msa0490440:CDS |
| CCTCCTGTTAGTGCTTGTTC+AGG | 0.362697 | 3_4:+11982309 | Msa0490440:CDS |
| CTTAAGCTTCCAACTATTTG+TGG | 0.365023 | 3_4:+11982276 | Msa0490440:CDS |
| ATTTGTTTGTGTAAGCTGTT+AGG | 0.384262 | 3_4:+11982204 | Msa0490440:CDS |
| CGGTGCAAAATGAGTTAGTT+AGG | 0.388672 | 3_4:+11981700 | Msa0490440:five_prime_UTR |
| TGAATATGTGTTATTATGAT+TGG | 0.393179 | 3_4:-11981822 | None:intergenic |
| TCAACTTCATCTGATAGTTC+AGG | 0.394833 | 3_4:+11983921 | Msa0490440:CDS |
| GTCAGATTGTTTGACATTTG+TGG | 0.406541 | 3_4:+11982107 | Msa0490440:CDS |
| GAGTTAGCAGGGTTGATTGA+TGG | 0.411939 | 3_4:+11982174 | Msa0490440:CDS |
| AATGTAAAATCAGAAGAATA+TGG | 0.417381 | 3_4:-11984340 | None:intergenic |
| AGTGCTTTGCTTTAGTGGAT+TGG | 0.419671 | 3_4:+11984425 | Msa0490440:three_prime_UTR |
| TCAGGACAACATCCTTTGTC+TGG | 0.420386 | 3_4:-11982153 | None:intergenic |
| TGATTGGTATGTTATATAGT+TGG | 0.424649 | 3_4:-11981806 | None:intergenic |
| TTACCTGAACAAGCACTAAC+AGG | 0.424650 | 3_4:-11982312 | None:intergenic |
| TGTTTGACATTTGTGGAAGA+TGG | 0.446855 | 3_4:+11982114 | Msa0490440:CDS |
| TCAGATGAAGTTGAAGGACT+TGG | 0.451820 | 3_4:-11983912 | None:intergenic |
| CTATATAGCAAGAATGTAGT+TGG | 0.452894 | 3_4:-11984537 | None:intergenic |
| GGTAATGCTGCTGATTCTAT+TGG | 0.462047 | 3_4:+11982228 | Msa0490440:CDS |
| ACAGCTTACACAAACAAATA+GGG | 0.462564 | 3_4:-11982200 | None:intergenic |
| AAAACCGCGGTTTCCGGTGC+CGG | 0.471159 | 3_4:-11982036 | None:intergenic |
| GCGCCATCACCGGCAGATGA+TGG | 0.475243 | 3_4:+11982060 | Msa0490440:CDS |
| GGCAGATGATGGATGCTTGA+TGG | 0.475901 | 3_4:+11982071 | Msa0490440:CDS |
| GGATGTTGTCCTGAGTTAGC+AGG | 0.476788 | 3_4:+11982162 | Msa0490440:CDS |
| TGCTGCTTTGGCTCAATCAC+CGG | 0.486295 | 3_4:+11982017 | Msa0490440:CDS |
| GTTTGACATTTGTGGAAGAT+GGG | 0.488176 | 3_4:+11982115 | Msa0490440:CDS |
| TCACTCTCATTTCATGGAGA+TGG | 0.490910 | 3_4:+11981985 | Msa0490440:CDS |
| GTAGTAACACCACAAATAGT+TGG | 0.491016 | 3_4:-11982285 | None:intergenic |
| GAACTATCAGATGAAGTTGA+AGG | 0.493768 | 3_4:-11983918 | None:intergenic |
| CAGATGAAGTTGAAGGACTT+GGG | 0.496998 | 3_4:-11983911 | None:intergenic |
| CATCCATCATCTGCCGGTGA+TGG | 0.511093 | 3_4:-11982063 | None:intergenic |
| TAGTTGGAGTAAATAAATAG+AGG | 0.514530 | 3_4:-11981790 | None:intergenic |
| TTTGGCTCAATCACCGGCAC+CGG | 0.516118 | 3_4:+11982023 | Msa0490440:CDS |
| ACTCGGTAGTGTTGTGATGT+AGG | 0.516958 | 3_4:-11984471 | None:intergenic |
| TATATAGCAAGAATGTAGTT+GGG | 0.527922 | 3_4:-11984536 | None:intergenic |
| GATATGGCAATGTCACCAAA+AGG | 0.530694 | 3_4:+11983882 | Msa0490440:intron |
| AATGAGTTTCTAACTTCTGG+TGG | 0.552507 | 3_4:-11981752 | None:intergenic |
| CCTTCTGGAAGCAAAATTGG+AGG | 0.554339 | 3_4:+11984255 | Msa0490440:CDS |
| TGCAGAGGCTTGAATGCTTG+AGG | 0.572865 | 3_4:-11984280 | None:intergenic |
| TCAATCAACCCTGCTAACTC+AGG | 0.575923 | 3_4:-11982171 | None:intergenic |
| TCCACTCAGTGATGGAGGCA+AGG | 0.577085 | 3_4:-11983711 | None:intergenic |
| CGGTGATGGCGCTAAAACCG+CGG | 0.578610 | 3_4:-11982049 | None:intergenic |
| TGGAGACAGAGACAGTGGAC+AGG | 0.579721 | 3_4:-11984320 | None:intergenic |
| ATAGCATCTCCACTCAGTGA+TGG | 0.584097 | 3_4:-11983719 | None:intergenic |
| ATCAAGCATCCATCATCTGC+CGG | 0.595406 | 3_4:-11982069 | None:intergenic |
| GATGTTGTCCTGAGTTAGCA+GGG | 0.597137 | 3_4:+11982163 | Msa0490440:CDS |
| TGCAAAGAGTAAAGAAACAA+TGG | 0.599464 | 3_4:-11981962 | None:intergenic |
| AGTTGGAGTAAATAAATAGA+GGG | 0.601980 | 3_4:-11981789 | None:intergenic |
| GAATATGGAGACAGAGACAG+TGG | 0.605345 | 3_4:-11984325 | None:intergenic |
| GCATCTCCACTCAGTGATGG+AGG | 0.609350 | 3_4:-11983716 | None:intergenic |
| AGATGAAGTTGAAGGACTTG+GGG | 0.617347 | 3_4:-11983910 | None:intergenic |
| ATATGAAACTAATGACACAT+AGG | 0.618243 | 3_4:-11984372 | None:intergenic |
| GGAGACAGAGACAGTGGACA+GGG | 0.621999 | 3_4:-11984319 | None:intergenic |
| AGTGATGGAGGCAAGGACAC+AGG | 0.629179 | 3_4:-11983704 | None:intergenic |
| ATCACCAAGAACGAAGAACT+CGG | 0.632446 | 3_4:-11984488 | None:intergenic |
| TGTTTGTGTAAGCTGTTAGG+TGG | 0.635667 | 3_4:+11982207 | Msa0490440:CDS |
| TCCTTGCCTCCATCACTGAG+TGG | 0.643834 | 3_4:+11983710 | Msa0490440:CDS |
| ATCACCGGCACCGGAAACCG+CGG | 0.645420 | 3_4:+11982032 | Msa0490440:CDS |
| AAGTTGACAAAACCAGACAA+AGG | 0.698102 | 3_4:+11982141 | Msa0490440:CDS |
| CCTGAACAAGCACTAACAGG+AGG | 0.707608 | 3_4:-11982309 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTCAAATTTTAAAATATT+TGG | + | chr3_4:11982372-11982391 | Msa0490440:intron | 10.0% |
| !! | TTAAAATAATGTTAAAACAA+AGG | - | chr3_4:11983033-11983052 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTTTTTTTTTGA+AGG | + | chr3_4:11984076-11984095 | Msa0490440:intron | 10.0% |
| !! | TATATATAATATAGTCTATT+CGG | - | chr3_4:11984633-11984652 | None:intergenic | 10.0% |
| !! | AAACATTACTTATATCTATA+TGG | + | chr3_4:11982427-11982446 | Msa0490440:intron | 15.0% |
| !!! | ATTTTTAAGTTTTGTTTGAT+AGG | - | chr3_4:11982872-11982891 | None:intergenic | 15.0% |
| !! | TTATATATTACCAATGATTA+TGG | + | chr3_4:11982921-11982940 | Msa0490440:intron | 15.0% |
| !! | GTTAAAATATACACTATAAT+TGG | + | chr3_4:11983084-11983103 | Msa0490440:intron | 15.0% |
| !! | ACAATTATTAAATTCAAAGA+AGG | - | chr3_4:11983209-11983228 | None:intergenic | 15.0% |
| !!! | GTGTTACAATTATTTATTTT+GGG | - | chr3_4:11983399-11983418 | None:intergenic | 15.0% |
| !! | AAAAGAAAATAAAAAAAGAG+TGG | - | chr3_4:11983454-11983473 | None:intergenic | 15.0% |
| !! | AAAAGAAAATAAAAAAAGAG+TGG | - | chr3_4:11983454-11983473 | None:intergenic | 15.0% |
| !! | AACAACAATAAATTAACTTA+TGG | - | chr3_4:11983762-11983781 | None:intergenic | 15.0% |
| !! | TTGATAAAATAATGAAGATA+TGG | + | chr3_4:11983866-11983885 | Msa0490440:intron | 15.0% |
| !! | TAATGATCATAAATATCAAT+CGG | + | chr3_4:11984034-11984053 | Msa0490440:intron | 15.0% |
| !! | TGGATCCAAAAATAAATAAA+CGG | + | chr3_4:11981680-11981699 | Msa0490440:five_prime_UTR | 20.0% |
| !!! | TGAATATGTGTTATTATGAT+TGG | - | chr3_4:11981825-11981844 | None:intergenic | 20.0% |
| !! | GATTATTTGTCTTTCATATT+TGG | + | chr3_4:11982513-11982532 | Msa0490440:intron | 20.0% |
| !! | GCATTATAATAACTAAATTG+TGG | + | chr3_4:11982650-11982669 | Msa0490440:intron | 20.0% |
| !! | AAGATCCTATAAAAAACTTT+AGG | - | chr3_4:11982682-11982701 | None:intergenic | 20.0% |
| !!! | GATCTTAAAATGTGATTTTT+TGG | + | chr3_4:11982744-11982763 | Msa0490440:intron | 20.0% |
| !! | ATTATTAAATTCAAAGAAGG+CGG | - | chr3_4:11983206-11983225 | None:intergenic | 20.0% |
| !! | TTATATTGCAATTACTAGTA+AGG | + | chr3_4:11983317-11983336 | Msa0490440:intron | 20.0% |
| !!! | TTTATTTGTTGAATGGTAAA+GGG | - | chr3_4:11983355-11983374 | None:intergenic | 20.0% |
| !!! | ATTTATTTGTTGAATGGTAA+AGG | - | chr3_4:11983356-11983375 | None:intergenic | 20.0% |
| !!! | TTGCAAATTTATTTGTTGAA+TGG | - | chr3_4:11983362-11983381 | None:intergenic | 20.0% |
| !!! | GGTGTTACAATTATTTATTT+TGG | - | chr3_4:11983400-11983419 | None:intergenic | 20.0% |
| !! | TATGTAAATTTACATGAACT+TGG | + | chr3_4:11983595-11983614 | Msa0490440:intron | 20.0% |
| !! | TTGATGGAAAATTCTATATT+TGG | - | chr3_4:11984175-11984194 | None:intergenic | 20.0% |
| !! | AATGTAAAATCAGAAGAATA+TGG | - | chr3_4:11984343-11984362 | None:intergenic | 20.0% |
| !! | GATTATTACACACTTTAATT+AGG | + | chr3_4:11984447-11984466 | Msa0490440:three_prime_UTR | 20.0% |
| !!! | TTGCACCGTTTATTTATTTT+TGG | - | chr3_4:11981688-11981707 | None:intergenic | 25.0% |
| ! | AAAAATGAGTTTCTAACTTC+TGG | - | chr3_4:11981758-11981777 | None:intergenic | 25.0% |
| ! | AGTTGGAGTAAATAAATAGA+GGG | - | chr3_4:11981792-11981811 | None:intergenic | 25.0% |
| ! | TAGTTGGAGTAAATAAATAG+AGG | - | chr3_4:11981793-11981812 | None:intergenic | 25.0% |
| ! | TGATTGGTATGTTATATAGT+TGG | - | chr3_4:11981809-11981828 | None:intergenic | 25.0% |
| !!! | TTAGTTTTTGTGATAGGTTT+TGG | - | chr3_4:11981916-11981935 | None:intergenic | 25.0% |
| ! | ACCTATCACAAAAACTAAAA+TGG | + | chr3_4:11981918-11981937 | Msa0490440:exon | 25.0% |
| ! | TTTATGATTATGTGAGAAGT+TGG | + | chr3_4:11982628-11982647 | Msa0490440:intron | 25.0% |
| !!! | CACATCCTAAAGTTTTTTAT+AGG | + | chr3_4:11982674-11982693 | Msa0490440:intron | 25.0% |
| ! | CAATAATAGACCATAATCAT+TGG | - | chr3_4:11982934-11982953 | None:intergenic | 25.0% |
| ! | AAATTTGCAATAAGTGATGT+AGG | + | chr3_4:11983372-11983391 | Msa0490440:intron | 25.0% |
| ! | ACAAATTAAGGTGAACAATT+TGG | - | chr3_4:11983427-11983446 | None:intergenic | 25.0% |
| ! | TAACTTATGGAAAACTTACT+TGG | - | chr3_4:11983749-11983768 | None:intergenic | 25.0% |
| ! | TAACTTGAGTAAAACTCATT+TGG | + | chr3_4:11983992-11984011 | Msa0490440:intron | 25.0% |
| ! | CATGCACATAAAAGTTAATA+AGG | - | chr3_4:11984123-11984142 | None:intergenic | 25.0% |
| !! | CTTATTAACTTTTATGTGCA+TGG | + | chr3_4:11984121-11984140 | Msa0490440:intron | 25.0% |
| ! | ACTTTAGTACTATATGTTGA+TGG | - | chr3_4:11984191-11984210 | None:intergenic | 25.0% |
| !!! | TGTATTTTTCAAAATTGTGC+AGG | + | chr3_4:11984222-11984241 | Msa0490440:intron | 25.0% |
| ! | ATATGAAACTAATGACACAT+AGG | - | chr3_4:11984375-11984394 | None:intergenic | 25.0% |
| ! | TATATAGCAAGAATGTAGTT+GGG | - | chr3_4:11984539-11984558 | None:intergenic | 25.0% |
| !! | AATTTTGAGAGGATAGAAGT+TGG | + | chr3_4:11981660-11981679 | Msa0490440:five_prime_UTR | 30.0% |
| ATAAATAGAGGGACTTGATT+TGG | - | chr3_4:11981781-11981800 | None:intergenic | 30.0% | |
| !!! | GCCATTTTAGTTTTTGTGAT+AGG | - | chr3_4:11981922-11981941 | None:intergenic | 30.0% |
| TGCAAAGAGTAAAGAAACAA+TGG | - | chr3_4:11981965-11981984 | None:intergenic | 30.0% | |
| ACAGCTTACACAAACAAATA+GGG | - | chr3_4:11982203-11982222 | None:intergenic | 30.0% | |
| AACAGCTTACACAAACAAAT+AGG | - | chr3_4:11982204-11982223 | None:intergenic | 30.0% | |
| ATTTGTTTGTGTAAGCTGTT+AGG | + | chr3_4:11982204-11982223 | Msa0490440:CDS | 30.0% | |
| TATTTAGTTAGCCATCTTGT+CGG | + | chr3_4:11982714-11982733 | Msa0490440:intron | 30.0% | |
| AAACAAAGGTAACACTATGT+TGG | - | chr3_4:11983019-11983038 | None:intergenic | 30.0% | |
| TAATTGCAATATAACTGCTG+TGG | - | chr3_4:11983311-11983330 | None:intergenic | 30.0% | |
| ATTGCAATTACTAGTAAGGT+AGG | + | chr3_4:11983321-11983340 | Msa0490440:intron | 30.0% | |
| TTGCAATTACTAGTAAGGTA+GGG | + | chr3_4:11983322-11983341 | Msa0490440:intron | 30.0% | |
| TATATATGTGTCACAGCTAT+TGG | + | chr3_4:11983677-11983696 | Msa0490440:intron | 30.0% | |
| ! | AAAGCACTCAATACACAAAT+AGG | - | chr3_4:11984413-11984432 | None:intergenic | 30.0% |
| CTATATAGCAAGAATGTAGT+TGG | - | chr3_4:11984540-11984559 | None:intergenic | 30.0% | |
| AATGAGTTTCTAACTTCTGG+TGG | - | chr3_4:11981755-11981774 | None:intergenic | 35.0% | |
| !!! | TTGTGATAGGTTTTGGACTT+TGG | - | chr3_4:11981909-11981928 | None:intergenic | 35.0% |
| TTTGCATCACTCTCATTTCA+TGG | + | chr3_4:11981979-11981998 | Msa0490440:CDS | 35.0% | |
| GTCAGATTGTTTGACATTTG+TGG | + | chr3_4:11982107-11982126 | Msa0490440:CDS | 35.0% | |
| TGTTTGACATTTGTGGAAGA+TGG | + | chr3_4:11982114-11982133 | Msa0490440:CDS | 35.0% | |
| GTTTGACATTTGTGGAAGAT+GGG | + | chr3_4:11982115-11982134 | Msa0490440:CDS | 35.0% | |
| AAGTTGACAAAACCAGACAA+AGG | + | chr3_4:11982141-11982160 | Msa0490440:CDS | 35.0% | |
| CTTAAGCTTCCAACTATTTG+TGG | + | chr3_4:11982276-11982295 | Msa0490440:CDS | 35.0% | |
| GTAGTAACACCACAAATAGT+TGG | - | chr3_4:11982288-11982307 | None:intergenic | 35.0% | |
| CTTCTTAGGTTTAGGTATGT+TGG | - | chr3_4:11982983-11983002 | None:intergenic | 35.0% | |
| TTGTCTCTCTTCTTAGGTTT+AGG | - | chr3_4:11982991-11983010 | None:intergenic | 35.0% | |
| GTAACTTTGTCTCTCTTCTT+AGG | - | chr3_4:11982997-11983016 | None:intergenic | 35.0% | |
| AATTCCATTACACATGGTGA+TGG | - | chr3_4:11983150-11983169 | None:intergenic | 35.0% | |
| ! | ATCACCATGTGTAATGGAAT+TGG | + | chr3_4:11983149-11983168 | Msa0490440:intron | 35.0% |
| CTATCCAATTCCATTACACA+TGG | - | chr3_4:11983156-11983175 | None:intergenic | 35.0% | |
| ! | TGTGGTTGGCTAACTAAATA+TGG | - | chr3_4:11983293-11983312 | None:intergenic | 35.0% |
| ! | TAAGGTGAACAATTTGGAGT+TGG | - | chr3_4:11983421-11983440 | None:intergenic | 35.0% |
| AAGAGTGGCATGACAAATTA+AGG | - | chr3_4:11983439-11983458 | None:intergenic | 35.0% | |
| AAGAGTGGCATGACAAATTA+AGG | - | chr3_4:11983439-11983458 | None:intergenic | 35.0% | |
| GAAATTACCTTGATCATCTG+TGG | + | chr3_4:11983825-11983844 | Msa0490440:intron | 35.0% | |
| TAAGTTACCACAGATGATCA+AGG | - | chr3_4:11983835-11983854 | None:intergenic | 35.0% | |
| GAACTATCAGATGAAGTTGA+AGG | - | chr3_4:11983921-11983940 | None:intergenic | 35.0% | |
| TCAACTTCATCTGATAGTTC+AGG | + | chr3_4:11983921-11983940 | Msa0490440:CDS | 35.0% | |
| AAAAATGAAAGTCAGTGCAG+AGG | - | chr3_4:11984298-11984317 | None:intergenic | 35.0% | |
| TATTGAGTGCTTTGCTTTAG+TGG | + | chr3_4:11984420-11984439 | Msa0490440:three_prime_UTR | 35.0% | |
| CGGTGCAAAATGAGTTAGTT+AGG | + | chr3_4:11981700-11981719 | Msa0490440:five_prime_UTR | 40.0% | |
| CTTCTGGTGGCAGAATTTAA+TGG | - | chr3_4:11981742-11981761 | None:intergenic | 40.0% | |
| TCACTCTCATTTCATGGAGA+TGG | + | chr3_4:11981985-11982004 | Msa0490440:CDS | 40.0% | |
| TGTTTGTGTAAGCTGTTAGG+TGG | + | chr3_4:11982207-11982226 | Msa0490440:CDS | 40.0% | |
| !! | GGTAATGCTGCTGATTCTAT+TGG | + | chr3_4:11982228-11982247 | Msa0490440:CDS | 40.0% |
| TTACCTGAACAAGCACTAAC+AGG | - | chr3_4:11982315-11982334 | None:intergenic | 40.0% | |
| CTCATCATTGTCTCTCATCT+AGG | - | chr3_4:11982584-11982603 | None:intergenic | 40.0% | |
| AGAGACAATGATGAGTGAAG+AGG | + | chr3_4:11982589-11982608 | Msa0490440:intron | 40.0% | |
| GAGACAATGATGAGTGAAGA+GGG | + | chr3_4:11982590-11982609 | Msa0490440:intron | 40.0% | |
| GATCAAAATAGCCGACAAGA+TGG | - | chr3_4:11982728-11982747 | None:intergenic | 40.0% | |
| ! | GCTAACTAAATATGGTGGAG+AGG | - | chr3_4:11983285-11983304 | None:intergenic | 40.0% |
| ! | GGTTGGCTAACTAAATATGG+TGG | - | chr3_4:11983290-11983309 | None:intergenic | 40.0% |
| TGCAATATAACTGCTGTGGT+TGG | - | chr3_4:11983307-11983326 | None:intergenic | 40.0% | |
| GATATGGCAATGTCACCAAA+AGG | + | chr3_4:11983882-11983901 | Msa0490440:intron | 40.0% | |
| AGATGAAGTTGAAGGACTTG+GGG | - | chr3_4:11983913-11983932 | None:intergenic | 40.0% | |
| CAGATGAAGTTGAAGGACTT+GGG | - | chr3_4:11983914-11983933 | None:intergenic | 40.0% | |
| TCAGATGAAGTTGAAGGACT+TGG | - | chr3_4:11983915-11983934 | None:intergenic | 40.0% | |
| ! | CTCCAATTTTGCTTCCAGAA+GGG | - | chr3_4:11984257-11984276 | None:intergenic | 40.0% |
| ! | AGTGCTTTGCTTTAGTGGAT+TGG | + | chr3_4:11984425-11984444 | Msa0490440:three_prime_UTR | 40.0% |
| ATCACCAAGAACGAAGAACT+CGG | - | chr3_4:11984491-11984510 | None:intergenic | 40.0% | |
| ATCAAGCATCCATCATCTGC+CGG | - | chr3_4:11982072-11982091 | None:intergenic | 45.0% | |
| TCAGGACAACATCCTTTGTC+TGG | - | chr3_4:11982156-11982175 | None:intergenic | 45.0% | |
| GATGTTGTCCTGAGTTAGCA+GGG | + | chr3_4:11982163-11982182 | Msa0490440:CDS | 45.0% | |
| TCAATCAACCCTGCTAACTC+AGG | - | chr3_4:11982174-11982193 | None:intergenic | 45.0% | |
| ! | GAGTTAGCAGGGTTGATTGA+TGG | + | chr3_4:11982174-11982193 | Msa0490440:CDS | 45.0% |
| !! | CATTACACATGGTGATGGAC+TGG | - | chr3_4:11983145-11983164 | None:intergenic | 45.0% |
| CAGTCCATCACCATGTGTAA+TGG | + | chr3_4:11983143-11983162 | Msa0490440:intron | 45.0% | |
| GAAGGCGGTATCAACAAAGA+AGG | - | chr3_4:11983191-11983210 | None:intergenic | 45.0% | |
| ATAGCATCTCCACTCAGTGA+TGG | - | chr3_4:11983722-11983741 | None:intergenic | 45.0% | |
| ! | AGCCCTTCTGGAAGCAAAAT+TGG | + | chr3_4:11984252-11984271 | Msa0490440:CDS | 45.0% |
| ! | CCTCCAATTTTGCTTCCAGA+AGG | - | chr3_4:11984258-11984277 | None:intergenic | 45.0% |
| ! | CCTTCTGGAAGCAAAATTGG+AGG | + | chr3_4:11984255-11984274 | Msa0490440:CDS | 45.0% |
| GAATATGGAGACAGAGACAG+TGG | - | chr3_4:11984328-11984347 | None:intergenic | 45.0% | |
| ACTCGGTAGTGTTGTGATGT+AGG | - | chr3_4:11984474-11984493 | None:intergenic | 45.0% | |
| ACTACCGAGTTCTTCGTTCT+TGG | + | chr3_4:11984484-11984503 | Msa0490440:three_prime_UTR | 45.0% | |
| !! | AAAACTTAAAAATAATAATT+TGG | + | chr3_4:11982879-11982898 | Msa0490440:intron | 5.0% |
| ! | TGGAGTATCTGCTGCTGCTT+TGG | + | chr3_4:11982005-11982024 | Msa0490440:CDS | 50.0% |
| !! | TGCTGCTTTGGCTCAATCAC+CGG | + | chr3_4:11982017-11982036 | Msa0490440:CDS | 50.0% |
| !! | GGCAGATGATGGATGCTTGA+TGG | + | chr3_4:11982071-11982090 | Msa0490440:CDS | 50.0% |
| GGATGTTGTCCTGAGTTAGC+AGG | + | chr3_4:11982162-11982181 | Msa0490440:CDS | 50.0% | |
| CCTGAACAAGCACTAACAGG+AGG | - | chr3_4:11982312-11982331 | None:intergenic | 50.0% | |
| CCTCCTGTTAGTGCTTGTTC+AGG | + | chr3_4:11982309-11982328 | Msa0490440:CDS | 50.0% | |
| !! | ACATGGTGATGGACTGGCAT+TGG | - | chr3_4:11983139-11983158 | None:intergenic | 50.0% |
| ! | GGACTTGGGGCTAATCCTTT+TGG | - | chr3_4:11983900-11983919 | None:intergenic | 50.0% |
| TGCAGAGGCTTGAATGCTTG+AGG | - | chr3_4:11984283-11984302 | None:intergenic | 50.0% | |
| ! | TTTGGCTCAATCACCGGCAC+CGG | + | chr3_4:11982023-11982042 | Msa0490440:CDS | 55.0% |
| CATCCATCATCTGCCGGTGA+TGG | - | chr3_4:11982066-11982085 | None:intergenic | 55.0% | |
| ! | AGTGATGGAGGCAAGGACAC+AGG | - | chr3_4:11983707-11983726 | None:intergenic | 55.0% |
| TCCTTGCCTCCATCACTGAG+TGG | + | chr3_4:11983710-11983729 | Msa0490440:CDS | 55.0% | |
| ! | TCCACTCAGTGATGGAGGCA+AGG | - | chr3_4:11983714-11983733 | None:intergenic | 55.0% |
| GCATCTCCACTCAGTGATGG+AGG | - | chr3_4:11983719-11983738 | None:intergenic | 55.0% | |
| GCAGGTGTTCTTAGCCCTTC+TGG | + | chr3_4:11984240-11984259 | Msa0490440:intron | 55.0% | |
| GGAGACAGAGACAGTGGACA+GGG | - | chr3_4:11984322-11984341 | None:intergenic | 55.0% | |
| TGGAGACAGAGACAGTGGAC+AGG | - | chr3_4:11984323-11984342 | None:intergenic | 55.0% | |
| AAAACCGCGGTTTCCGGTGC+CGG | - | chr3_4:11982039-11982058 | None:intergenic | 60.0% | |
| GGCGCTAAAACCGCGGTTTC+CGG | - | chr3_4:11982045-11982064 | None:intergenic | 60.0% | |
| ! | CGGTGATGGCGCTAAAACCG+CGG | - | chr3_4:11982052-11982071 | None:intergenic | 60.0% |
| !! | CGCGGTTTTAGCGCCATCAC+CGG | + | chr3_4:11982050-11982069 | Msa0490440:CDS | 60.0% |
| ! | ATCACCGGCACCGGAAACCG+CGG | + | chr3_4:11982032-11982051 | Msa0490440:CDS | 65.0% |
| GCGCCATCACCGGCAGATGA+TGG | + | chr3_4:11982060-11982079 | Msa0490440:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 11981658 | 11984669 | 11981658 | ID=Msa0490440;Name=Msa0490440 |
| chr3_4 | mRNA | 11981658 | 11984669 | 11981658 | ID=Msa0490440-mRNA-1;Parent=Msa0490440;Name=Msa0490440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=279|1|1|1|1|1|4|316|206 |
| chr3_4 | exon | 11981658 | 11982330 | 11981658 | ID=Msa0490440-mRNA-1:exon:3665;Parent=Msa0490440-mRNA-1 |
| chr3_4 | exon | 11983693 | 11983749 | 11983693 | ID=Msa0490440-mRNA-1:exon:3666;Parent=Msa0490440-mRNA-1 |
| chr3_4 | exon | 11983883 | 11983942 | 11983883 | ID=Msa0490440-mRNA-1:exon:3667;Parent=Msa0490440-mRNA-1 |
| chr3_4 | exon | 11984244 | 11984669 | 11984244 | ID=Msa0490440-mRNA-1:exon:3668;Parent=Msa0490440-mRNA-1 |
| chr3_4 | five_prime_UTR | 11981658 | 11981936 | 11981658 | ID=Msa0490440-mRNA-1:five_prime_utr;Parent=Msa0490440-mRNA-1 |
| chr3_4 | CDS | 11981937 | 11982330 | 11981937 | ID=Msa0490440-mRNA-1:cds;Parent=Msa0490440-mRNA-1 |
| chr3_4 | CDS | 11983693 | 11983749 | 11983693 | ID=Msa0490440-mRNA-1:cds;Parent=Msa0490440-mRNA-1 |
| chr3_4 | CDS | 11983883 | 11983942 | 11983883 | ID=Msa0490440-mRNA-1:cds;Parent=Msa0490440-mRNA-1 |
| chr3_4 | CDS | 11984244 | 11984353 | 11984244 | ID=Msa0490440-mRNA-1:cds;Parent=Msa0490440-mRNA-1 |
| chr3_4 | three_prime_UTR | 11984354 | 11984669 | 11984354 | ID=Msa0490440-mRNA-1:three_prime_utr;Parent=Msa0490440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
