Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982720 | XP_003601303.1 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 5.37e-125 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982720 | sp|Q9LZH5|LTPG2_ARATH | 46.324 | 136 | 63 | 3 | 43 | 169 | 32 | 166 | 7.94e-27 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982720 | B7FFE5 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 2.56e-125 | 361 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019540 | Msa0982720 | -0.800968 | 1.123549e-48 | -8.615850e-47 |
| Msa0047630 | Msa0982720 | 0.811146 | 8.098725e-51 | -8.615850e-47 |
| Msa0078110 | Msa0982720 | 0.807880 | 4.072200e-50 | -8.615850e-47 |
| Msa0099300 | Msa0982720 | 0.813207 | 2.876174e-51 | -8.615850e-47 |
| Msa0104860 | Msa0982720 | -0.843080 | 1.745211e-58 | -8.615850e-47 |
| Msa0607070 | Msa0982720 | 0.802642 | 5.092208e-49 | -8.615850e-47 |
| Msa0643590 | Msa0982720 | 0.824603 | 7.380010e-54 | -8.615850e-47 |
| Msa0648840 | Msa0982720 | 0.826707 | 2.339784e-54 | -8.615850e-47 |
| Msa0679270 | Msa0982720 | 0.809393 | 1.934245e-50 | -8.615850e-47 |
| Msa0679880 | Msa0982720 | 0.801426 | 9.055720e-49 | -8.615850e-47 |
| Msa0746640 | Msa0982720 | 0.986899 | 2.355421e-168 | -8.615850e-47 |
| Msa0774090 | Msa0982720 | 0.820060 | 8.374743e-53 | -8.615850e-47 |
| Msa0788490 | Msa0982720 | 0.818427 | 1.970907e-52 | -8.615850e-47 |
| Msa0811710 | Msa0982720 | 0.826092 | 3.278953e-54 | -8.615850e-47 |
| Msa0816390 | Msa0982720 | 0.811672 | 6.226817e-51 | -8.615850e-47 |
| Msa0184070 | Msa0982720 | 0.838620 | 2.581428e-57 | -8.615850e-47 |
| Msa0224700 | Msa0982720 | 0.810613 | 1.056463e-50 | -8.615850e-47 |
| Msa0369770 | Msa0982720 | 0.801918 | 7.178431e-49 | -8.615850e-47 |
| Msa0385400 | Msa0982720 | 0.812453 | 4.206627e-51 | -8.615850e-47 |
| Msa0402780 | Msa0982720 | 0.948225 | 1.438480e-106 | -8.615850e-47 |
| Msa0404840 | Msa0982720 | 0.834825 | 2.395953e-56 | -8.615850e-47 |
| Msa0417140 | Msa0982720 | 0.802971 | 4.355800e-49 | -8.615850e-47 |
| Msa0421790 | Msa0982720 | 0.819042 | 1.429063e-52 | -8.615850e-47 |
| Msa0450830 | Msa0982720 | 0.820195 | 7.795753e-53 | -8.615850e-47 |
| Msa0463980 | Msa0982720 | 0.808623 | 2.827861e-50 | -8.615850e-47 |
| Msa0467890 | Msa0982720 | 0.852467 | 4.528680e-61 | -8.615850e-47 |
| Msa0467970 | Msa0982720 | 0.857593 | 1.468379e-62 | -8.615850e-47 |
| Msa0982720 | Msa0988030 | 0.813148 | 2.963706e-51 | -8.615850e-47 |
| Msa0982720 | Msa1008760 | 0.808296 | 3.321456e-50 | -8.615850e-47 |
| Msa0982720 | Msa1098640 | 0.825939 | 3.564720e-54 | -8.615850e-47 |
| Msa0982720 | Msa1129920 | 0.842626 | 2.304616e-58 | -8.615850e-47 |
| Msa0982720 | Msa1138840 | 0.816018 | 6.865328e-52 | -8.615850e-47 |
| Msa0982720 | Msa1208510 | 0.836080 | 1.153834e-56 | -8.615850e-47 |
| Msa0982720 | Msa1211930 | 0.816789 | 4.613177e-52 | -8.615850e-47 |
| Msa0982720 | Msa1237760 | 0.801874 | 7.329669e-49 | -8.615850e-47 |
| Msa0982720 | Msa1275290 | 0.816076 | 6.662998e-52 | -8.615850e-47 |
| Msa0982720 | Msa1277600 | 0.815743 | 7.907341e-52 | -8.615850e-47 |
| Msa0982720 | Msa1278780 | 0.807675 | 4.502572e-50 | -8.615850e-47 |
| Msa0982720 | Msa1300850 | 0.846932 | 1.591834e-59 | -8.615850e-47 |
| Msa0982720 | Msa1318190 | 0.810201 | 1.296610e-50 | -8.615850e-47 |
| Msa0982720 | Msa1320070 | 0.802236 | 6.173170e-49 | -8.615850e-47 |
| Msa0982720 | Msa1334690 | 0.820307 | 7.350387e-53 | -8.615850e-47 |
| Msa0982720 | Msa1347400 | 0.997470 | 4.206957e-243 | -8.615850e-47 |
| Msa0982720 | Msa1369860 | 0.830517 | 2.809610e-55 | -8.615850e-47 |
| Msa0982720 | Msa1386820 | 0.822019 | 2.963724e-53 | -8.615850e-47 |
| Msa0982720 | Msa1444750 | 0.800303 | 1.535370e-48 | -8.615850e-47 |
| Msa0982720 | Msa1455560 | 0.801039 | 1.086865e-48 | -8.615850e-47 |
| Msa0247340 | Msa0982720 | 0.813415 | 2.589264e-51 | -8.615850e-47 |
| Msa0296100 | Msa0982720 | 0.825046 | 5.802911e-54 | -8.615850e-47 |
| Msa0303780 | Msa0982720 | 0.818429 | 1.969860e-52 | -8.615850e-47 |
| Msa0334480 | Msa0982720 | 0.816703 | 4.824270e-52 | -8.615850e-47 |
| Msa0490440 | Msa0982720 | 0.930530 | 1.433063e-93 | -8.615850e-47 |
| Msa0498090 | Msa0982720 | 0.817431 | 3.310199e-52 | -8.615850e-47 |
| Msa0509530 | Msa0982720 | 0.803894 | 2.803845e-49 | -8.615850e-47 |
| Msa0514280 | Msa0982720 | 0.860335 | 2.219698e-63 | -8.615850e-47 |
| Msa0522990 | Msa0982720 | 0.800136 | 1.660209e-48 | -8.615850e-47 |
| Msa0523980 | Msa0982720 | -0.804938 | 1.698838e-49 | -8.615850e-47 |
| Msa0544780 | Msa0982720 | 0.803796 | 2.938425e-49 | -8.615850e-47 |
| Msa0547790 | Msa0982720 | 0.827215 | 1.769751e-54 | -8.615850e-47 |
| Msa0552920 | Msa0982720 | 0.800522 | 1.385523e-48 | -8.615850e-47 |
| Msa0571070 | Msa0982720 | 0.822200 | 2.690489e-53 | -8.615850e-47 |
| Msa0602670 | Msa0982720 | 0.819701 | 1.011333e-52 | -8.615850e-47 |
| Msa0851870 | Msa0982720 | 0.826469 | 2.667491e-54 | -8.615850e-47 |
| Msa0871850 | Msa0982720 | 0.800254 | 1.570958e-48 | -8.615850e-47 |
| Msa0871860 | Msa0982720 | 0.827339 | 1.651868e-54 | -8.615850e-47 |
| Msa0880520 | Msa0982720 | 0.807746 | 4.347644e-50 | -8.615850e-47 |
| Msa0886880 | Msa0982720 | 0.840820 | 6.907869e-58 | -8.615850e-47 |
| Msa0905200 | Msa0982720 | 0.821524 | 3.857382e-53 | -8.615850e-47 |
| Msa0937180 | Msa0982720 | 0.828335 | 9.521937e-55 | -8.615850e-47 |
| Msa0937190 | Msa0982720 | 0.827331 | 1.659524e-54 | -8.615850e-47 |
| Msa0937200 | Msa0982720 | 0.801210 | 1.002594e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982720 | MtrunA17_Chr3g0118471 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 4.94e-129 | 361 |
| Msa0982720 | MtrunA17_Chr5g0395001 | 39.200 | 125 | 73 | 2 | 46 | 170 | 24 | 145 | 2.18e-18 | 78.6 |
| Msa0982720 | MtrunA17_Chr1g0205201 | 40.659 | 91 | 51 | 2 | 46 | 136 | 24 | 111 | 5.25e-16 | 72.0 |
| Msa0982720 | MtrunA17_Chr2g0278981 | 40.206 | 97 | 55 | 2 | 34 | 130 | 20 | 113 | 9.32e-16 | 72.4 |
| Msa0982720 | MtrunA17_Chr5g0429901 | 34.328 | 134 | 78 | 3 | 42 | 175 | 28 | 151 | 2.14e-15 | 71.2 |
| Msa0982720 | MtrunA17_Chr2g0278971 | 37.190 | 121 | 63 | 4 | 57 | 177 | 83 | 190 | 1.78e-14 | 69.3 |
| Msa0982720 | MtrunA17_Chr7g0260061 | 36.000 | 125 | 73 | 5 | 47 | 169 | 28 | 147 | 6.34e-13 | 64.7 |
| Msa0982720 | MtrunA17_Chr1g0205181 | 36.029 | 136 | 61 | 4 | 46 | 181 | 24 | 133 | 1.67e-12 | 62.8 |
| Msa0982720 | MtrunA17_Chr1g0205191 | 36.735 | 98 | 57 | 3 | 42 | 139 | 20 | 112 | 1.92e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982720 | AT3G43720.2 | 47.015 | 134 | 63 | 3 | 43 | 169 | 32 | 164 | 1.36e-28 | 106 |
| Msa0982720 | AT3G43720.1 | 46.324 | 136 | 63 | 3 | 43 | 169 | 32 | 166 | 8.08e-28 | 104 |
| Msa0982720 | AT2G27130.1 | 43.519 | 108 | 59 | 2 | 34 | 140 | 24 | 130 | 1.03e-23 | 93.2 |
| Msa0982720 | AT1G03103.1 | 35.443 | 158 | 85 | 5 | 49 | 204 | 24 | 166 | 4.33e-16 | 73.2 |
| Msa0982720 | AT3G22600.1 | 40.698 | 86 | 48 | 2 | 46 | 131 | 24 | 106 | 8.18e-16 | 72.4 |
| Msa0982720 | AT2G48130.2 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
| Msa0982720 | AT2G48130.6 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
| Msa0982720 | AT2G48130.4 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
| Msa0982720 | AT2G48130.5 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
| Msa0982720 | AT2G48130.1 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
| Msa0982720 | AT2G48130.3 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
| Msa0982720 | AT4G08670.1 | 34.356 | 163 | 94 | 6 | 42 | 197 | 40 | 196 | 6.66e-15 | 70.9 |
| Msa0982720 | AT2G13820.1 | 35.772 | 123 | 75 | 2 | 50 | 170 | 27 | 147 | 1.10e-14 | 69.3 |
| Msa0982720 | AT2G13820.3 | 35.772 | 123 | 75 | 2 | 50 | 170 | 39 | 159 | 1.30e-14 | 69.3 |
| Msa0982720 | AT5G64080.1 | 30.909 | 165 | 93 | 5 | 42 | 206 | 36 | 179 | 8.12e-14 | 67.4 |
| Msa0982720 | AT5G64080.2 | 33.077 | 130 | 77 | 4 | 42 | 165 | 36 | 161 | 8.90e-14 | 67.0 |
| Msa0982720 | AT4G14815.1 | 35.484 | 93 | 57 | 2 | 40 | 132 | 16 | 105 | 3.01e-13 | 65.1 |
| Msa0982720 | AT5G09370.3 | 34.188 | 117 | 69 | 3 | 50 | 163 | 28 | 139 | 3.66e-13 | 65.1 |
| Msa0982720 | AT2G13820.2 | 37.662 | 77 | 46 | 1 | 54 | 130 | 31 | 105 | 8.11e-13 | 63.2 |
| Msa0982720 | AT5G09370.1 | 35.714 | 98 | 58 | 2 | 50 | 147 | 28 | 120 | 2.65e-12 | 62.8 |
| Msa0982720 | AT5G09370.2 | 37.931 | 87 | 49 | 2 | 60 | 146 | 38 | 119 | 1.49e-11 | 60.1 |
Find 71 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTATTACACACTTTAATT+AGG | 0.225161 | 6_4:-22423737 | Msa0982720:three_prime_UTR |
| CTTCTGGTGGCAGAATTTAA+TGG | 0.240915 | 6_4:+22426776 | None:intergenic |
| AGCCCTTCTGGAAGCAAAAT+TGG | 0.248172 | 6_4:-22423932 | Msa0982720:CDS |
| GCAGGTGTTCTTAGCCCTTC+TGG | 0.257309 | 6_4:-22423944 | Msa0982720:intron |
| AACAGCTTACACAAACAAAT+AGG | 0.265322 | 6_4:+22426315 | None:intergenic |
| GGCGCTAAAACCGCGGTTTC+CGG | 0.269928 | 6_4:+22426474 | None:intergenic |
| TATTGAGTGCTTTGCTTTAG+TGG | 0.271967 | 6_4:-22423764 | Msa0982720:three_prime_UTR |
| TTTGCATCACTCTCATTTCA+TGG | 0.285544 | 6_4:-22426537 | Msa0982720:CDS |
| ATAAATAGAGGGACTTGATT+TGG | 0.291910 | 6_4:+22426737 | None:intergenic |
| ACTACCGAGTTCTTCGTTCT+TGG | 0.317095 | 6_4:-22423700 | Msa0982720:three_prime_UTR |
| AAAGCACTCAATACACAAAT+AGG | 0.323137 | 6_4:+22423774 | None:intergenic |
| GGACTTAGGGCTGATCCTTT+TGG | 0.329469 | 6_4:+22424285 | None:intergenic |
| TATATATAATATAGTCTATT+CGG | 0.351497 | 6_4:+22423554 | None:intergenic |
| TGGAGTATCTGCTGCTGCTT+TGG | 0.352720 | 6_4:-22426511 | Msa0982720:CDS |
| CCTCCTGTTAGTGCTTGTTC+AGG | 0.362697 | 6_4:-22426207 | Msa0982720:intron |
| CTTAAGCTTCCAACTATTTG+TGG | 0.365023 | 6_4:-22426240 | Msa0982720:CDS |
| ATTTGTTTGTGTAAGCTGTT+AGG | 0.384262 | 6_4:-22426312 | Msa0982720:CDS |
| CGGTGCAAAATGAGTTAGTT+AGG | 0.388672 | 6_4:-22426815 | Msa0982720:five_prime_UTR |
| TGAATATGTGTTATTATGAT+TGG | 0.393179 | 6_4:+22426693 | None:intergenic |
| TCAACTTCATCTGATAGTTC+AGG | 0.394833 | 6_4:-22424261 | Msa0982720:intron |
| GTCAGATTGTTTGACATTTG+TGG | 0.406541 | 6_4:-22426409 | Msa0982720:CDS |
| GAGTTAGCAGGGTTGATTGA+TGG | 0.411939 | 6_4:-22426342 | Msa0982720:CDS |
| AATGTAAAATCAGAAGAATA+TGG | 0.417381 | 6_4:+22423844 | None:intergenic |
| AGTGCTTTGCTTTAGTGGAT+TGG | 0.419671 | 6_4:-22423759 | Msa0982720:three_prime_UTR |
| TCAGGACAACATCCTTTGTC+TGG | 0.420386 | 6_4:+22426363 | None:intergenic |
| TGATTGGTATGTTATATAGT+TGG | 0.424649 | 6_4:+22426709 | None:intergenic |
| TTACCTGAACAAGCACTAAC+AGG | 0.424650 | 6_4:+22426204 | None:intergenic |
| AGATGAAGTTGAAGGACTTA+GGG | 0.439279 | 6_4:+22424272 | None:intergenic |
| TGTTTGACATTTGTGGAAGA+TGG | 0.446855 | 6_4:-22426402 | Msa0982720:CDS |
| CTATATAGCAAGAATGTAGT+TGG | 0.452894 | 6_4:+22423647 | None:intergenic |
| GGTAATGCTGCTGATTCTAT+TGG | 0.462047 | 6_4:-22426288 | Msa0982720:CDS |
| ACAGCTTACACAAACAAATA+GGG | 0.462564 | 6_4:+22426316 | None:intergenic |
| CAGATGAAGTTGAAGGACTT+AGG | 0.463432 | 6_4:+22424271 | None:intergenic |
| AAAACCGCGGTTTCCGGTGC+CGG | 0.471159 | 6_4:+22426480 | None:intergenic |
| GCGCCATCACCGGCAGATGA+TGG | 0.475243 | 6_4:-22426456 | Msa0982720:CDS |
| GGCAGATGATGGATGCTTGA+TGG | 0.475901 | 6_4:-22426445 | Msa0982720:CDS |
| GGATGTTGTCCTGAGTTAGC+AGG | 0.476788 | 6_4:-22426354 | Msa0982720:CDS |
| TGCTGCTTTGGCTCAATCAC+CGG | 0.486295 | 6_4:-22426499 | Msa0982720:CDS |
| GTTTGACATTTGTGGAAGAT+GGG | 0.488176 | 6_4:-22426401 | Msa0982720:CDS |
| TCACTCTCATTTCATGGAGA+TGG | 0.490910 | 6_4:-22426531 | Msa0982720:CDS |
| GTAGTAACACCACAAATAGT+TGG | 0.491016 | 6_4:+22426231 | None:intergenic |
| GAACTATCAGATGAAGTTGA+AGG | 0.493768 | 6_4:+22424264 | None:intergenic |
| CATCCATCATCTGCCGGTGA+TGG | 0.511093 | 6_4:+22426453 | None:intergenic |
| TAGTTGGAGTAAATAAATAG+AGG | 0.514530 | 6_4:+22426725 | None:intergenic |
| TTTGGCTCAATCACCGGCAC+CGG | 0.516118 | 6_4:-22426493 | Msa0982720:CDS |
| ACTCGGTAGTGTTGTGATGT+AGG | 0.516958 | 6_4:+22423713 | None:intergenic |
| TATATAGCAAGAATGTAGTT+GGG | 0.527922 | 6_4:+22423648 | None:intergenic |
| GATATGGCAATGTCACCAAA+AGG | 0.530694 | 6_4:-22424300 | Msa0982720:CDS |
| AATGAGTTTCTAACTTCTGG+TGG | 0.552507 | 6_4:+22426763 | None:intergenic |
| CCTTCTGGAAGCAAAATTGG+AGG | 0.554339 | 6_4:-22423929 | Msa0982720:CDS |
| TGCAGAGGCTTGAATGCTTG+AGG | 0.572865 | 6_4:+22423904 | None:intergenic |
| TCAATCAACCCTGCTAACTC+AGG | 0.575923 | 6_4:+22426345 | None:intergenic |
| TCCACTCAGTGATGGAGGCA+AGG | 0.577085 | 6_4:+22424471 | None:intergenic |
| CGGTGATGGCGCTAAAACCG+CGG | 0.578610 | 6_4:+22426467 | None:intergenic |
| TGGAGACAGAGACAGTGGAC+AGG | 0.579721 | 6_4:+22423864 | None:intergenic |
| ATAGCATCTCCACTCAGTGA+TGG | 0.584097 | 6_4:+22424463 | None:intergenic |
| ATCAAGCATCCATCATCTGC+CGG | 0.595406 | 6_4:+22426447 | None:intergenic |
| GATGTTGTCCTGAGTTAGCA+GGG | 0.597137 | 6_4:-22426353 | Msa0982720:CDS |
| TGCAAAGAGTAAAGAAACAA+TGG | 0.599464 | 6_4:+22426554 | None:intergenic |
| AGTTGGAGTAAATAAATAGA+GGG | 0.601980 | 6_4:+22426726 | None:intergenic |
| GAATATGGAGACAGAGACAG+TGG | 0.605345 | 6_4:+22423859 | None:intergenic |
| GCATCTCCACTCAGTGATGG+AGG | 0.609350 | 6_4:+22424466 | None:intergenic |
| ATATGAAACTAATGACACAT+AGG | 0.618243 | 6_4:+22423812 | None:intergenic |
| GGAGACAGAGACAGTGGACA+GGG | 0.621999 | 6_4:+22423865 | None:intergenic |
| AGTGATGGAGGCAAGGACAC+AGG | 0.629179 | 6_4:+22424478 | None:intergenic |
| ATCACCAAGAACGAAGAACT+CGG | 0.632446 | 6_4:+22423696 | None:intergenic |
| TGTTTGTGTAAGCTGTTAGG+TGG | 0.635667 | 6_4:-22426309 | Msa0982720:CDS |
| TCCTTGCCTCCATCACTGAG+TGG | 0.643834 | 6_4:-22424472 | Msa0982720:CDS |
| ATCACCGGCACCGGAAACCG+CGG | 0.645420 | 6_4:-22426484 | Msa0982720:CDS |
| AAGTTGACAAAACCAGACAA+AGG | 0.698102 | 6_4:-22426375 | Msa0982720:CDS |
| CCTGAACAAGCACTAACAGG+AGG | 0.707608 | 6_4:+22426207 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr6_4:22424314-22424333 | Msa0982720:intron | 0.0% |
| !!! | TGTTCAAATTTTAAAATATT+TGG | - | chr6_4:22424250-22424269 | Msa0982720:intron | 10.0% |
| !! | TTTAAATAATGTTAAAACAA+AGG | + | chr6_4:22425156-22425175 | None:intergenic | 10.0% |
| !! | TATATATAATATAGTCTATT+CGG | + | chr6_4:22426843-22426862 | None:intergenic | 10.0% |
| !! | ATATAAAAGATGCTATAATT+TGG | - | chr6_4:22424356-22424375 | Msa0982720:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr6_4:22424597-22424616 | None:intergenic | 15.0% |
| !! | AAATTATCCTTAATAACTAT+TGG | + | chr6_4:22424724-22424743 | None:intergenic | 15.0% |
| !! | AATAGTTATTAAGGATAATT+TGG | - | chr6_4:22424723-22424742 | Msa0982720:intron | 15.0% |
| !! | GATAAAAATAATTGACAAAA+TGG | + | chr6_4:22424850-22424869 | None:intergenic | 15.0% |
| !!! | TACCAAAAAAAACATATTTT+GGG | + | chr6_4:22424872-22424891 | None:intergenic | 15.0% |
| !!! | ATTTTTAAGTTTTGTTTGAT+AGG | + | chr6_4:22424995-22425014 | None:intergenic | 15.0% |
| !! | TTATATATTACCAATGATTA+TGG | - | chr6_4:22425044-22425063 | Msa0982720:intron | 15.0% |
| !! | GTTAAAATATACACTATAAT+TGG | - | chr6_4:22425207-22425226 | Msa0982720:intron | 15.0% |
| !! | ACAATTATTAAATTCAAAGA+AGG | + | chr6_4:22425331-22425350 | None:intergenic | 15.0% |
| !! | ATATGAATTATTCAAAAAGT+TGG | + | chr6_4:22425391-22425410 | None:intergenic | 15.0% |
| !!! | GTGTTACAATTATTTATTTT+GGG | + | chr6_4:22425668-22425687 | None:intergenic | 15.0% |
| !! | AAAAGAAAATAAAAAAAGAG+TGG | + | chr6_4:22425723-22425742 | None:intergenic | 15.0% |
| !! | AACAACAATAAATTAACTTA+TGG | + | chr6_4:22425974-22425993 | None:intergenic | 15.0% |
| !! | TTGATAAAATAATGAAGATA+TGG | - | chr6_4:22426078-22426097 | Msa0982720:intron | 15.0% |
| !! | TAATGATCATAAATATCAAT+CGG | - | chr6_4:22426246-22426265 | Msa0982720:CDS | 15.0% |
| !! | TGGATCCAAAAATAAATAAA+CGG | - | chr6_4:22423559-22423578 | Msa0982720:three_prime_UTR | 20.0% |
| !!! | TGAATATGTGTTATTATGAT+TGG | + | chr6_4:22423704-22423723 | None:intergenic | 20.0% |
| !! | ACATTATAATAACTGAATTG+CGG | - | chr6_4:22424497-22424516 | Msa0982720:intron | 20.0% |
| !! | AATCCTTAAAAAAAAACTTG+AGG | + | chr6_4:22424529-22424548 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTATTA+AGG | - | chr6_4:22424714-22424733 | Msa0982720:intron | 20.0% |
| !!! | ATCCCAAAATATGTTTTTTT+TGG | - | chr6_4:22424867-22424886 | Msa0982720:intron | 20.0% |
| !!! | CTACCAAAAAAAACATATTT+TGG | + | chr6_4:22424873-22424892 | None:intergenic | 20.0% |
| !! | ATTATTAAATTCAAAGAAGG+CGG | + | chr6_4:22425328-22425347 | None:intergenic | 20.0% |
| !! | TAATATTGCAATTACTAGTA+AGG | - | chr6_4:22425586-22425605 | Msa0982720:intron | 20.0% |
| !!! | TTTATTTGTTGAATGGTAAA+GGG | + | chr6_4:22425624-22425643 | None:intergenic | 20.0% |
| !!! | ATTTATTTGTTGAATGGTAA+AGG | + | chr6_4:22425625-22425644 | None:intergenic | 20.0% |
| !!! | TTGCAAATTTATTTGTTGAA+TGG | + | chr6_4:22425631-22425650 | None:intergenic | 20.0% |
| !!! | GGTGTTACAATTATTTATTT+TGG | + | chr6_4:22425669-22425688 | None:intergenic | 20.0% |
| !! | TATGTAAATTTACATGAACT+TGG | - | chr6_4:22425809-22425828 | Msa0982720:intron | 20.0% |
| !! | TAACTTAAGTAAAACTCATT+TGG | - | chr6_4:22426204-22426223 | Msa0982720:intron | 20.0% |
| !! | TTGATGGAAAATTCTATATT+TGG | + | chr6_4:22426386-22426405 | None:intergenic | 20.0% |
| !! | AATGTAAAATCAGAAGAATA+TGG | + | chr6_4:22426553-22426572 | None:intergenic | 20.0% |
| !! | GATTATTACACACTTTAATT+AGG | - | chr6_4:22426657-22426676 | Msa0982720:five_prime_UTR | 20.0% |
| !!! | TTGCACCGTTTATTTATTTT+TGG | + | chr6_4:22423567-22423586 | None:intergenic | 25.0% |
| ! | AAAAATGAGTTTCTAACTTC+TGG | + | chr6_4:22423637-22423656 | None:intergenic | 25.0% |
| ! | AGTTGGAGTAAATAAATAGA+GGG | + | chr6_4:22423671-22423690 | None:intergenic | 25.0% |
| ! | TAGTTGGAGTAAATAAATAG+AGG | + | chr6_4:22423672-22423691 | None:intergenic | 25.0% |
| ! | TGATTGGTATGTTATATAGT+TGG | + | chr6_4:22423688-22423707 | None:intergenic | 25.0% |
| !!! | TTAGTTTTTGTGATAGGTTT+TGG | + | chr6_4:22423794-22423813 | None:intergenic | 25.0% |
| ! | ACCTATCACAAAAACTAAAA+TGG | - | chr6_4:22423796-22423815 | Msa0982720:three_prime_UTR | 25.0% |
| ! | ATAATTAACGATGAGTTAAG+AGG | - | chr6_4:22424436-22424455 | Msa0982720:intron | 25.0% |
| ! | TAATTAACGATGAGTTAAGA+GGG | - | chr6_4:22424437-22424456 | Msa0982720:intron | 25.0% |
| !!! | CATCCTCAAGTTTTTTTTTA+AGG | - | chr6_4:22424523-22424542 | Msa0982720:intron | 25.0% |
| ! | AGAAACAGTTATTATTGCAT+TGG | + | chr6_4:22424637-22424656 | None:intergenic | 25.0% |
| !!! | AAACGACACTAATTTTGAAA+CGG | - | chr6_4:22424807-22424826 | Msa0982720:intron | 25.0% |
| ! | CAATAATAGACCATAATCAT+TGG | + | chr6_4:22425057-22425076 | None:intergenic | 25.0% |
| ! | GAACAATTAATAACAGACAT+GGG | + | chr6_4:22425510-22425529 | None:intergenic | 25.0% |
| ! | TGAACAATTAATAACAGACA+TGG | + | chr6_4:22425511-22425530 | None:intergenic | 25.0% |
| ! | TAATTGCAATATTATTGCTG+TGG | + | chr6_4:22425580-22425599 | None:intergenic | 25.0% |
| ! | AAATTTGCAATAAGTGATGT+AGG | - | chr6_4:22425641-22425660 | Msa0982720:intron | 25.0% |
| ! | ACAAATTAAGGTGAACAATT+TGG | + | chr6_4:22425696-22425715 | None:intergenic | 25.0% |
| ! | TAACTTATGGAAAACTTACT+TGG | + | chr6_4:22425961-22425980 | None:intergenic | 25.0% |
| ! | CATGCACATAAAAGTTAATA+AGG | + | chr6_4:22426334-22426353 | None:intergenic | 25.0% |
| !! | CTTATTAACTTTTATGTGCA+TGG | - | chr6_4:22426332-22426351 | Msa0982720:CDS | 25.0% |
| ! | ACTTTAGTACTATATGTTGA+TGG | + | chr6_4:22426402-22426421 | None:intergenic | 25.0% |
| !!! | TGTATTTTTCAAAATTGTGC+AGG | - | chr6_4:22426432-22426451 | Msa0982720:CDS | 25.0% |
| ! | ATATGAAACTAATGACACAT+AGG | + | chr6_4:22426585-22426604 | None:intergenic | 25.0% |
| ! | TATATAGCAAGAATGTAGTT+GGG | + | chr6_4:22426749-22426768 | None:intergenic | 25.0% |
| !! | AATTTTGAGAGGATAGAAGT+TGG | - | chr6_4:22423539-22423558 | Msa0982720:three_prime_UTR | 30.0% |
| ATAAATAGAGGGACTTGATT+TGG | + | chr6_4:22423660-22423679 | None:intergenic | 30.0% | |
| !!! | GCCATTTTAGTTTTTGTGAT+AGG | + | chr6_4:22423800-22423819 | None:intergenic | 30.0% |
| TGCAAAGAGTAAAGAAACAA+TGG | + | chr6_4:22423843-22423862 | None:intergenic | 30.0% | |
| ACAGCTTACACAAACAAATA+GGG | + | chr6_4:22424081-22424100 | None:intergenic | 30.0% | |
| AACAGCTTACACAAACAAAT+AGG | + | chr6_4:22424082-22424101 | None:intergenic | 30.0% | |
| ATTTGTTTGTGTAAGCTGTT+AGG | - | chr6_4:22424082-22424101 | Msa0982720:intron | 30.0% | |
| TCGTTAATTATCTCTCATCT+AGG | + | chr6_4:22424427-22424446 | None:intergenic | 30.0% | |
| ! | TGTGCAAAGTATTAATTGGA+GGG | + | chr6_4:22424671-22424690 | None:intergenic | 30.0% |
| ! | GTAGTGTGCAAAGTATTAAT+TGG | + | chr6_4:22424675-22424694 | None:intergenic | 30.0% |
| AAACAAAGGTAACACTATGT+TGG | + | chr6_4:22425142-22425161 | None:intergenic | 30.0% | |
| ATTGCAATTACTAGTAAGGT+AGG | - | chr6_4:22425590-22425609 | Msa0982720:intron | 30.0% | |
| TTGCAATTACTAGTAAGGTA+GGG | - | chr6_4:22425591-22425610 | Msa0982720:intron | 30.0% | |
| TATATATGTGTCACAGCTAT+TGG | - | chr6_4:22425889-22425908 | Msa0982720:intron | 30.0% | |
| ! | AAAGCACTCAATACACAAAT+AGG | + | chr6_4:22426623-22426642 | None:intergenic | 30.0% |
| CTATATAGCAAGAATGTAGT+TGG | + | chr6_4:22426750-22426769 | None:intergenic | 30.0% | |
| AATGAGTTTCTAACTTCTGG+TGG | + | chr6_4:22423634-22423653 | None:intergenic | 35.0% | |
| !!! | TTGTGATAGGTTTTGGACTT+TGG | + | chr6_4:22423787-22423806 | None:intergenic | 35.0% |
| TTTGCATCACTCTCATTTCA+TGG | - | chr6_4:22423857-22423876 | Msa0982720:CDS | 35.0% | |
| GTCAGATTGTTTGACATTTG+TGG | - | chr6_4:22423985-22424004 | Msa0982720:intron | 35.0% | |
| TGTTTGACATTTGTGGAAGA+TGG | - | chr6_4:22423992-22424011 | Msa0982720:intron | 35.0% | |
| GTTTGACATTTGTGGAAGAT+GGG | - | chr6_4:22423993-22424012 | Msa0982720:intron | 35.0% | |
| AAGTTGACAAAACCAGACAA+AGG | - | chr6_4:22424019-22424038 | Msa0982720:intron | 35.0% | |
| CTTAAGCTTCCAACTATTTG+TGG | - | chr6_4:22424154-22424173 | Msa0982720:intron | 35.0% | |
| GTAGTAACACCACAAATAGT+TGG | + | chr6_4:22424166-22424185 | None:intergenic | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr6_4:22424571-22424590 | None:intergenic | 35.0% |
| ! | GTGTGCAAAGTATTAATTGG+AGG | + | chr6_4:22424672-22424691 | None:intergenic | 35.0% |
| !!! | GACACTAATTTTGAAACGGA+GGG | - | chr6_4:22424811-22424830 | Msa0982720:intron | 35.0% |
| CTTCTTAGGTTTAGGTATGT+TGG | + | chr6_4:22425106-22425125 | None:intergenic | 35.0% | |
| TTGTCTCTCTTCTTAGGTTT+AGG | + | chr6_4:22425114-22425133 | None:intergenic | 35.0% | |
| GTAACTTTGTCTCTCTTCTT+AGG | + | chr6_4:22425120-22425139 | None:intergenic | 35.0% | |
| AATTCCATTACACATGGTGA+TGG | + | chr6_4:22425272-22425291 | None:intergenic | 35.0% | |
| ! | ATCACCATGTGTAATGGAAT+TGG | - | chr6_4:22425271-22425290 | Msa0982720:intron | 35.0% |
| ! | TGTGGTTGGCTAACTAAATA+TGG | + | chr6_4:22425562-22425581 | None:intergenic | 35.0% |
| TGCAATATTATTGCTGTGGT+TGG | + | chr6_4:22425576-22425595 | None:intergenic | 35.0% | |
| ! | TAAGGTGAACAATTTGGAGT+TGG | + | chr6_4:22425690-22425709 | None:intergenic | 35.0% |
| AAGAGTGGCATGACAAATTA+AGG | + | chr6_4:22425708-22425727 | None:intergenic | 35.0% | |
| GAAATTACCTTGATCATCTG+TGG | - | chr6_4:22426037-22426056 | Msa0982720:intron | 35.0% | |
| TAAGTTACCACAGATGATCA+AGG | + | chr6_4:22426047-22426066 | None:intergenic | 35.0% | |
| AGATGAAGTTGAAGGACTTA+GGG | + | chr6_4:22426125-22426144 | None:intergenic | 35.0% | |
| GAACTATCAGATGAAGTTGA+AGG | + | chr6_4:22426133-22426152 | None:intergenic | 35.0% | |
| TCAACTTCATCTGATAGTTC+AGG | - | chr6_4:22426133-22426152 | Msa0982720:intron | 35.0% | |
| AAAAATGAAAGTCAGTGCAG+AGG | + | chr6_4:22426508-22426527 | None:intergenic | 35.0% | |
| TATTGAGTGCTTTGCTTTAG+TGG | - | chr6_4:22426630-22426649 | Msa0982720:five_prime_UTR | 35.0% | |
| CGGTGCAAAATGAGTTAGTT+AGG | - | chr6_4:22423579-22423598 | Msa0982720:three_prime_UTR | 40.0% | |
| CTTCTGGTGGCAGAATTTAA+TGG | + | chr6_4:22423621-22423640 | None:intergenic | 40.0% | |
| TCACTCTCATTTCATGGAGA+TGG | - | chr6_4:22423863-22423882 | Msa0982720:CDS | 40.0% | |
| TGTTTGTGTAAGCTGTTAGG+TGG | - | chr6_4:22424085-22424104 | Msa0982720:intron | 40.0% | |
| !! | GGTAATGCTGCTGATTCTAT+TGG | - | chr6_4:22424106-22424125 | Msa0982720:intron | 40.0% |
| TTACCTGAACAAGCACTAAC+AGG | + | chr6_4:22424193-22424212 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+TGG | + | chr6_4:22424567-22424586 | None:intergenic | 40.0% |
| !!! | CGACACTAATTTTGAAACGG+AGG | - | chr6_4:22424810-22424829 | Msa0982720:intron | 40.0% |
| CTAGCCAATTCCATTACACA+TGG | + | chr6_4:22425278-22425297 | None:intergenic | 40.0% | |
| ! | GCTAACTAAATATGGTGGAG+AGG | + | chr6_4:22425554-22425573 | None:intergenic | 40.0% |
| ! | GGTTGGCTAACTAAATATGG+TGG | + | chr6_4:22425559-22425578 | None:intergenic | 40.0% |
| GATATGGCAATGTCACCAAA+AGG | - | chr6_4:22426094-22426113 | Msa0982720:intron | 40.0% | |
| CAGATGAAGTTGAAGGACTT+AGG | + | chr6_4:22426126-22426145 | None:intergenic | 40.0% | |
| ! | CTCCAATTTTGCTTCCAGAA+GGG | + | chr6_4:22426467-22426486 | None:intergenic | 40.0% |
| ! | AGTGCTTTGCTTTAGTGGAT+TGG | - | chr6_4:22426635-22426654 | Msa0982720:five_prime_UTR | 40.0% |
| ATCACCAAGAACGAAGAACT+CGG | + | chr6_4:22426701-22426720 | None:intergenic | 40.0% | |
| ATCAAGCATCCATCATCTGC+CGG | + | chr6_4:22423950-22423969 | None:intergenic | 45.0% | |
| TCAGGACAACATCCTTTGTC+TGG | + | chr6_4:22424034-22424053 | None:intergenic | 45.0% | |
| GATGTTGTCCTGAGTTAGCA+GGG | - | chr6_4:22424041-22424060 | Msa0982720:intron | 45.0% | |
| TCAATCAACCCTGCTAACTC+AGG | + | chr6_4:22424052-22424071 | None:intergenic | 45.0% | |
| ! | GAGTTAGCAGGGTTGATTGA+TGG | - | chr6_4:22424052-22424071 | Msa0982720:intron | 45.0% |
| !! | ACATGGTGATGGACTGACAT+TGG | + | chr6_4:22425261-22425280 | None:intergenic | 45.0% |
| CAGTCCATCACCATGTGTAA+TGG | - | chr6_4:22425265-22425284 | Msa0982720:intron | 45.0% | |
| GAAGGCGGTATCAACAAAGA+AGG | + | chr6_4:22425313-22425332 | None:intergenic | 45.0% | |
| ATAGCATCTCCACTCAGTGA+TGG | + | chr6_4:22425934-22425953 | None:intergenic | 45.0% | |
| ! | AGCCCTTCTGGAAGCAAAAT+TGG | - | chr6_4:22426462-22426481 | Msa0982720:CDS | 45.0% |
| ! | CCTCCAATTTTGCTTCCAGA+AGG | + | chr6_4:22426468-22426487 | None:intergenic | 45.0% |
| ! | CCTTCTGGAAGCAAAATTGG+AGG | - | chr6_4:22426465-22426484 | Msa0982720:CDS | 45.0% |
| GAATATGGAGACAGAGACAG+TGG | + | chr6_4:22426538-22426557 | None:intergenic | 45.0% | |
| ACTCGGTAGTGTTGTGATGT+AGG | + | chr6_4:22426684-22426703 | None:intergenic | 45.0% | |
| ACTACCGAGTTCTTCGTTCT+TGG | - | chr6_4:22426694-22426713 | Msa0982720:five_prime_UTR | 45.0% | |
| !! | AAAACTTAAAAATAATAATT+TGG | - | chr6_4:22425002-22425021 | Msa0982720:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | - | chr6_4:22426287-22426306 | Msa0982720:CDS | 5.0% |
| ! | TGGAGTATCTGCTGCTGCTT+TGG | - | chr6_4:22423883-22423902 | Msa0982720:CDS | 50.0% |
| !! | TGCTGCTTTGGCTCAATCAC+CGG | - | chr6_4:22423895-22423914 | Msa0982720:CDS | 50.0% |
| !! | GGCAGATGATGGATGCTTGA+TGG | - | chr6_4:22423949-22423968 | Msa0982720:intron | 50.0% |
| GGATGTTGTCCTGAGTTAGC+AGG | - | chr6_4:22424040-22424059 | Msa0982720:intron | 50.0% | |
| CCTGAACAAGCACTAACAGG+AGG | + | chr6_4:22424190-22424209 | None:intergenic | 50.0% | |
| CCTCCTGTTAGTGCTTGTTC+AGG | - | chr6_4:22424187-22424206 | Msa0982720:intron | 50.0% | |
| ! | GGACTTAGGGCTGATCCTTT+TGG | + | chr6_4:22426112-22426131 | None:intergenic | 50.0% |
| TGCAGAGGCTTGAATGCTTG+AGG | + | chr6_4:22426493-22426512 | None:intergenic | 50.0% | |
| ! | TTTGGCTCAATCACCGGCAC+CGG | - | chr6_4:22423901-22423920 | Msa0982720:CDS | 55.0% |
| CATCCATCATCTGCCGGTGA+TGG | + | chr6_4:22423944-22423963 | None:intergenic | 55.0% | |
| ! | AGTGATGGAGGCAAGGACAC+AGG | + | chr6_4:22425919-22425938 | None:intergenic | 55.0% |
| TCCTTGCCTCCATCACTGAG+TGG | - | chr6_4:22425922-22425941 | Msa0982720:intron | 55.0% | |
| ! | TCCACTCAGTGATGGAGGCA+AGG | + | chr6_4:22425926-22425945 | None:intergenic | 55.0% |
| GCATCTCCACTCAGTGATGG+AGG | + | chr6_4:22425931-22425950 | None:intergenic | 55.0% | |
| GCAGGTGTTCTTAGCCCTTC+TGG | - | chr6_4:22426450-22426469 | Msa0982720:CDS | 55.0% | |
| GGAGACAGAGACAGTGGACA+GGG | + | chr6_4:22426532-22426551 | None:intergenic | 55.0% | |
| TGGAGACAGAGACAGTGGAC+AGG | + | chr6_4:22426533-22426552 | None:intergenic | 55.0% | |
| AAAACCGCGGTTTCCGGTGC+CGG | + | chr6_4:22423917-22423936 | None:intergenic | 60.0% | |
| GGCGCTAAAACCGCGGTTTC+CGG | + | chr6_4:22423923-22423942 | None:intergenic | 60.0% | |
| ! | CGGTGATGGCGCTAAAACCG+CGG | + | chr6_4:22423930-22423949 | None:intergenic | 60.0% |
| !! | CGCGGTTTTAGCGCCATCAC+CGG | - | chr6_4:22423928-22423947 | Msa0982720:CDS | 60.0% |
| ! | ATCACCGGCACCGGAAACCG+CGG | - | chr6_4:22423910-22423929 | Msa0982720:CDS | 65.0% |
| GCGCCATCACCGGCAGATGA+TGG | - | chr6_4:22423938-22423957 | Msa0982720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 22423537 | 22426879 | 22423537 | ID=Msa0982720;Name=Msa0982720 |
| chr6_4 | mRNA | 22423537 | 22426879 | 22423537 | ID=Msa0982720-mRNA-1;Parent=Msa0982720;Name=Msa0982720-mRNA-1;_AED=0.00;_eAED=0.00;_QI=278|1|1|1|1|1|4|316|206 |
| chr6_4 | exon | 22423537 | 22423962 | 22423537 | ID=Msa0982720-mRNA-1:exon:7132;Parent=Msa0982720-mRNA-1 |
| chr6_4 | exon | 22424262 | 22424321 | 22424262 | ID=Msa0982720-mRNA-1:exon:7131;Parent=Msa0982720-mRNA-1 |
| chr6_4 | exon | 22424455 | 22424511 | 22424455 | ID=Msa0982720-mRNA-1:exon:7130;Parent=Msa0982720-mRNA-1 |
| chr6_4 | exon | 22426208 | 22426879 | 22426208 | ID=Msa0982720-mRNA-1:exon:7129;Parent=Msa0982720-mRNA-1 |
| chr6_4 | five_prime_UTR | 22426602 | 22426879 | 22426602 | ID=Msa0982720-mRNA-1:five_prime_utr;Parent=Msa0982720-mRNA-1 |
| chr6_4 | CDS | 22426208 | 22426601 | 22426208 | ID=Msa0982720-mRNA-1:cds;Parent=Msa0982720-mRNA-1 |
| chr6_4 | CDS | 22424455 | 22424511 | 22424455 | ID=Msa0982720-mRNA-1:cds;Parent=Msa0982720-mRNA-1 |
| chr6_4 | CDS | 22424262 | 22424321 | 22424262 | ID=Msa0982720-mRNA-1:cds;Parent=Msa0982720-mRNA-1 |
| chr6_4 | CDS | 22423853 | 22423962 | 22423853 | ID=Msa0982720-mRNA-1:cds;Parent=Msa0982720-mRNA-1 |
| chr6_4 | three_prime_UTR | 22423537 | 22423852 | 22423537 | ID=Msa0982720-mRNA-1:three_prime_utr;Parent=Msa0982720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
