AlfalfaGEDB | Msa0385400

M. sativa cultivar zhongmu-4 / Msa0385400

KEGG: -
GO: -
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385400	XP_003603782.1	97.019	369	10	1	1	368	1	369	0.0	727

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385400	sp\|Q94CH6\|EXL3_ARATH	58.841	345	140	2	23	366	20	363	1.05e-150	432

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385400	G7J5A5	97.019	369	10	1	1	368	1	369	0.0	727

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0385400	0.819689	1.017675e-52	-8.615850e-47
Msa0001540	Msa0385400	0.800573	1.353013e-48	-8.615850e-47
Msa0002690	Msa0385400	0.822222	2.658457e-53	-8.615850e-47
Msa0002700	Msa0385400	0.832959	7.016744e-56	-8.615850e-47
Msa0003370	Msa0385400	0.844316	8.153718e-59	-8.615850e-47
Msa0005500	Msa0385400	0.838170	3.371334e-57	-8.615850e-47
Msa0009210	Msa0385400	0.800625	1.320136e-48	-8.615850e-47
Msa0015370	Msa0385400	0.811652	6.290432e-51	-8.615850e-47
Msa0018010	Msa0385400	0.819400	1.184965e-52	-8.615850e-47
Msa0021570	Msa0385400	0.831857	1.315666e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385400	MtrunA17_Chr3g0142941	97.019	369	10	1	1	368	1	369	0.0	727
Msa0385400	MtrunA17_Chr1g0156931	69.697	363	106	3	5	366	1	360	0.0	529
Msa0385400	MtrunA17_Chr1g0156891	65.029	346	120	1	19	363	16	361	7.60e-174	488
Msa0385400	MtrunA17_Chr3g0142921	64.225	355	123	2	16	366	3	357	1.41e-169	477
Msa0385400	MtrunA17_Chr1g0156901	60.665	361	140	1	8	366	10	370	2.18e-169	477
Msa0385400	MtrunA17_Chr1g0156911	60.057	348	138	1	16	363	8	354	3.19e-163	461
Msa0385400	MtrunA17_Chr1g0156921	58.571	350	144	1	18	366	14	363	4.08e-157	446
Msa0385400	MtrunA17_Chr8g0371491	51.906	341	163	1	24	363	14	354	4.06e-132	382
Msa0385400	MtrunA17_Chr5g0405821	54.046	346	156	3	17	359	14	359	4.78e-132	382
Msa0385400	MtrunA17_Chr5g0405831	52.464	345	162	2	17	359	14	358	5.77e-128	372

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0385400	AT1G75900.1	58.841	345	140	2	23	366	20	363	1.07e-151	432
Msa0385400	AT1G75880.2	53.571	364	165	2	7	366	10	373	4.05e-138	398
Msa0385400	AT1G75880.1	53.699	365	164	3	7	366	10	374	6.85e-137	395
Msa0385400	AT1G75890.2	52.035	344	163	2	22	363	23	366	1.14e-133	386
Msa0385400	AT1G75890.3	52.035	344	163	2	22	363	52	395	1.45e-133	387
Msa0385400	AT5G42170.1	54.217	332	148	2	36	366	40	368	1.21e-131	381
Msa0385400	AT1G75890.1	50.140	357	163	3	22	363	23	379	3.58e-130	378
Msa0385400	AT3G14820.1	54.467	347	153	3	17	362	3	345	8.67e-130	376
Msa0385400	AT1G59406.1	52.000	350	160	6	19	366	5	348	3.43e-124	362
Msa0385400	AT1G59030.1	52.000	350	160	6	19	366	5	348	3.43e-124	362

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Find 94 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGCGATCTTCCTAC+TGG	0.507244	3_1:+88945729	Msa0385400:CDS
AAATCAGTCGGTGATTTCAT+TGG	0.402412	3_1:+88945906	Msa0385400:intron
AAATGCAGGATATAAAGTTG+CGG	0.654000	3_1:+88946478	Msa0385400:intron
AAGCTTTCTGTATACACTTT+CGG	0.369467	3_1:-88946612	None:intergenic
AAGGTGTGGTTGGAGAGAAT+AGG	0.534567	3_1:+88945971	Msa0385400:CDS
AAGTGCAATTTCCCTCCTTA+TGG	0.329907	3_1:+88943990	Msa0385400:CDS
AAGTGTATACAGAAAGCTTG+TGG	0.647850	3_1:+88946616	Msa0385400:CDS
AATATAAATGACCCTACTAT+TGG	0.297842	3_1:-88946331	None:intergenic
AATATCATAGTGCAGTTGTC+TGG	0.466366	3_1:-88946076	None:intergenic
AATATGTATTCTGAATTATC+AGG	0.387799	3_1:-88946569	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCCATCAGACTTGAT+AGG	+	chr3_1:88944059-88944078	Msa0385400:CDS	30.0%
TATATACCTATCAAGTCTGA+TGG	-	chr3_1:88944068-88944087	None:intergenic	30.0%
ATTAATTGAGCCTCATTAGA+AGG	+	chr3_1:88944789-88944808	Msa0385400:intron	30.0%
ATTGTCAGTAGAGAATAATG+TGG	+	chr3_1:88945082-88945101	Msa0385400:intron	30.0%
GAATACATAGTGAAGCTTAA+AGG	+	chr3_1:88945952-88945971	Msa0385400:CDS	30.0%
TGCTTCATTGTATTTCTCAT+TGG	-	chr3_1:88946253-88946272	None:intergenic	30.0%
GTGAAGATAATCTAACTCTT+TGG	-	chr3_1:88946301-88946320	None:intergenic	30.0%
CTTGAGAATGATATCAAGTA+AGG	-	chr3_1:88946370-88946389	None:intergenic	30.0%
AAATGCAGGATATAAAGTTG+CGG	+	chr3_1:88946478-88946497	Msa0385400:intron	30.0%
AAGCTTTCTGTATACACTTT+CGG	-	chr3_1:88946615-88946634	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	88943694	88946964	88943694	ID=Msa0385400;Name=Msa0385400
chr3_1	mRNA	88943694	88946964	88943694	ID=Msa0385400-mRNA-1;Parent=Msa0385400;Name=Msa0385400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95\|1\|1\|1\|1\|1\|4\|285\|368
chr3_1	exon	88943694	88944080	88943694	ID=Msa0385400-mRNA-1:exon:24088;Parent=Msa0385400-mRNA-1
chr3_1	exon	88945676	88945806	88945676	ID=Msa0385400-mRNA-1:exon:24089;Parent=Msa0385400-mRNA-1
chr3_1	exon	88945913	88946402	88945913	ID=Msa0385400-mRNA-1:exon:24090;Parent=Msa0385400-mRNA-1
chr3_1	exon	88946486	88946964	88946486	ID=Msa0385400-mRNA-1:exon:24091;Parent=Msa0385400-mRNA-1
chr3_1	five_prime_UTR	88943694	88943788	88943694	ID=Msa0385400-mRNA-1:five_prime_utr;Parent=Msa0385400-mRNA-1
chr3_1	CDS	88943789	88944080	88943789	ID=Msa0385400-mRNA-1:cds;Parent=Msa0385400-mRNA-1
chr3_1	CDS	88945676	88945806	88945676	ID=Msa0385400-mRNA-1:cds;Parent=Msa0385400-mRNA-1
chr3_1	CDS	88945913	88946402	88945913	ID=Msa0385400-mRNA-1:cds;Parent=Msa0385400-mRNA-1
chr3_1	CDS	88946486	88946679	88946486	ID=Msa0385400-mRNA-1:cds;Parent=Msa0385400-mRNA-1
chr3_1	three_prime_UTR	88946680	88946964	88946680	ID=Msa0385400-mRNA-1:three_prime_utr;Parent=Msa0385400-mRNA-1

Gene Sequence

>Msa0385400

ATGGCTGTGTTTATGATGAAGCTGCCTAGCACTTATTCACCAAATAGCTTAATATTATTACGTTTCATGTTGTTGTTAGTTTTATCGTATAGAACGAATGCATTGGTTAAACTACCACCAAATGTTACAGTTCCTGCACTCATAGCTTTTGGAGATTCTATCATGGATACAGGAAATAACAATAACATCAAAACAATCGTCAAGTGCAATTTCCCTCCTTATGGTCAAGATTTTGAGGGAGGGATTCCAACAGGTCGATTTTGCAACGGAAAAAATCCATCAGACTTGATAGTTGAAGAGTTAGGTATTAAAGAGCTTTTACCAGCTTATTTGGATCCAAATCTCAAACCAAGCGATCTTCCTACTGGAGTATGCTTTGCTTCTGGTGCATCTGGATATGATCCTTTAACGCCTAAAATAGTGTCGGTGATTTCATTGGCCGATCAACTAAAGATGTTCAAAGAATACATAGTGAAGCTTAAAGGTGTGGTTGGAGAGAATAGGGCAAACTTCATCCTAGCAAATACTCTTTTCCTTATAGTAGCTGGAAGTGATGACCTTGCCAACACCTATTTTACTATTCGCACCAGACAACTGCACTATGATATTCCTGCTTATGCTGACCTAATGGTCAAAGGAGCCTCTGATTTTATTAAGGAAATATATCAACTTGGAGCACGCAGAATTGGAGTGTTTAGTGCAGCCCCTATTGGGTACTTACCATCACAGAAGACTCTAGGTGGGGGTGTATATAGAAAGACCAATGAGAAATACAATGAAGCAGCCAAGTTATTCAACTCCAAACTCTCCAAAGAGTTAGATTATCTTCACTCTAACTTGCCCAATAGTAGGGTCATTTATATTGATATTTACAGTCCCTTACTTGATATCATTCTCAAGCCCCAAAAATATGGATATAAAGTTGCGGATAAAGGTTGTTGTGGTACAGGAAAGCTAGAGGTTTCAGTGCTATGCAACCCTTTGAGTGCCACTTGTCCTGATAATTCAGAATACATATTTTGGGACAGTTATCATCCAACCGAAAGTGTATACAGAAAGCTTGTGGCTGTAGTTCTTCCAAAATATGTGGGTCGATTGACTGCATGA

Protein sequence

>Msa0385400

MAVFMMKLPSTYSPNSLILLRFMLLLVLSYRTNALVKLPPNVTVPALIAFGDSIMDTGNNNNIKTIVKCNFPPYGQDFEGGIPTGRFCNGKNPSDLIVEELGIKELLPAYLDPNLKPSDLPTGVCFASGASGYDPLTPKIVSVISLADQLKMFKEYIVKLKGVVGENRANFILANTLFLIVAGSDDLANTYFTIRTRQLHYDIPAYADLMVKGASDFIKEIYQLGARRIGVFSAAPIGYLPSQKTLGGGVYRKTNEKYNEAAKLFNSKLSKELDYLHSNLPNSRVIYIDIYSPLLDIILKPQKYGYKVADKGCCGTGKLEVSVLCNPLSATCPDNSEYIFWDSYHPTESVYRKLVAVVLPKYVGRLTA*