AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385400 MtrunA17_Chr3g0142941 97.019 369 10 1 1 368 1 369 0.0 727
Msa0385400 MtrunA17_Chr1g0156931 69.697 363 106 3 5 366 1 360 0.0 529
Msa0385400 MtrunA17_Chr1g0156891 65.029 346 120 1 19 363 16 361 7.60e-174 488
Msa0385400 MtrunA17_Chr3g0142921 64.225 355 123 2 16 366 3 357 1.41e-169 477
Msa0385400 MtrunA17_Chr1g0156901 60.665 361 140 1 8 366 10 370 2.18e-169 477
Msa0385400 MtrunA17_Chr1g0156911 60.057 348 138 1 16 363 8 354 3.19e-163 461
Msa0385400 MtrunA17_Chr1g0156921 58.571 350 144 1 18 366 14 363 4.08e-157 446
Msa0385400 MtrunA17_Chr8g0371491 51.906 341 163 1 24 363 14 354 4.06e-132 382
Msa0385400 MtrunA17_Chr5g0405821 54.046 346 156 3 17 359 14 359 4.78e-132 382
Msa0385400 MtrunA17_Chr5g0405831 52.464 345 162 2 17 359 14 358 5.77e-128 372
Msa0385400 MtrunA17_Chr8g0371481 51.603 343 162 3 23 361 16 358 1.37e-121 355
Msa0385400 MtrunA17_Chr8g0371471 51.170 342 164 2 23 361 16 357 9.50e-121 353
Msa0385400 MtrunA17_Chr5g0438621 44.860 321 172 2 44 361 28 346 1.06e-99 299
Msa0385400 MtrunA17_Chr5g0438631 43.302 321 178 3 44 361 26 345 1.82e-92 280
Msa0385400 MtrunA17_Chr1g0157001 42.812 313 176 2 51 362 41 351 3.91e-92 280
Msa0385400 MtrunA17_Chr5g0432101 44.136 324 174 3 46 362 33 356 1.97e-89 273
Msa0385400 MtrunA17_Chr2g0283191 43.119 327 176 4 44 360 36 362 4.75e-88 270
Msa0385400 MtrunA17_Chr4g0046151 41.640 317 177 2 46 354 36 352 1.38e-87 268
Msa0385400 MtrunA17_Chr3g0105401 36.286 350 221 2 19 366 1 350 9.54e-87 266
Msa0385400 MtrunA17_Chr2g0320671 41.880 351 192 4 6 355 1 340 8.75e-86 263
Msa0385400 MtrunA17_Chr3g0120861 43.137 306 173 1 44 348 36 341 2.33e-84 260
Msa0385400 MtrunA17_Chr8g0341001 40.476 336 196 3 22 355 10 343 2.51e-84 260
Msa0385400 MtrunA17_Chr5g0438641 38.636 352 206 3 17 363 8 354 7.81e-82 253
Msa0385400 MtrunA17_Chr2g0330781 40.187 321 190 2 41 359 26 346 3.78e-80 249
Msa0385400 MtrunA17_Chr5g0437421 40.312 320 181 4 44 355 30 347 6.03e-80 249
Msa0385400 MtrunA17_Chr4g0027521 36.875 320 198 2 44 359 25 344 5.04e-65 210
Msa0385400 MtrunA17_Chr2g0285061 35.161 310 194 5 44 349 30 336 2.36e-63 206
Msa0385400 MtrunA17_Chr3g0086641 32.537 335 217 6 17 348 12 340 9.41e-59 194
Msa0385400 MtrunA17_Chr7g0275021 31.476 359 230 8 6 359 1 348 1.07e-58 194
Msa0385400 MtrunA17_Chr7g0275011 33.742 326 201 6 42 359 30 348 1.13e-58 194
Msa0385400 MtrunA17_Chr1g0182811 32.143 364 216 8 1 355 4 345 1.54e-58 194
Msa0385400 MtrunA17_Chr3g0077571 35.691 311 190 7 43 350 27 330 2.65e-58 193
Msa0385400 MtrunA17_Chr8g0380041 33.871 310 197 5 44 349 29 334 2.82e-58 193
Msa0385400 MtrunA17_Chr4g0008851 33.333 324 199 6 42 355 28 344 3.09e-57 190
Msa0385400 MtrunA17_Chr1g0189901 33.333 315 201 5 46 355 31 341 6.56e-57 189
Msa0385400 MtrunA17_Chr7g0274991 32.092 349 219 7 15 355 5 343 7.28e-57 189
Msa0385400 MtrunA17_Chr3g0077581 32.822 326 205 9 32 348 22 342 9.59e-55 184
Msa0385400 MtrunA17_Chr6g0463261 66.393 122 41 0 98 219 3 124 1.61e-54 175
Msa0385400 MtrunA17_Chr7g0275001 32.602 319 207 4 46 359 25 340 1.78e-54 183
Msa0385400 MtrunA17_Chr4g0017431 30.631 333 226 4 21 350 6 336 2.43e-54 182
Msa0385400 MtrunA17_Chr5g0434621 34.740 308 186 8 50 350 29 328 5.00e-54 181
Msa0385400 MtrunA17_Chr1g0189931 33.437 323 198 6 46 359 32 346 1.07e-53 181
Msa0385400 MtrunA17_Chr3g0092131 32.915 319 206 7 50 364 27 341 1.52e-52 178
Msa0385400 MtrunA17_Chr8g0374101 31.871 342 221 7 18 350 11 349 2.84e-52 177
Msa0385400 MtrunA17_Chr3g0131321 30.347 346 229 5 16 356 10 348 1.01e-51 176
Msa0385400 MtrunA17_Chr6g0457921 32.288 319 206 6 47 359 30 344 2.21e-51 175
Msa0385400 MtrunA17_Chr2g0294301 35.093 322 193 8 37 349 26 340 2.75e-51 175
Msa0385400 MtrunA17_Chr4g0060811 32.087 321 210 7 50 366 31 347 4.86e-50 171
Msa0385400 MtrunA17_Chr1g0189891 32.500 320 200 7 46 359 29 338 1.46e-49 170
Msa0385400 MtrunA17_Chr3g0099161 32.386 352 218 8 15 355 62 404 4.07e-49 171
Msa0385400 MtrunA17_Chr4g0068441 33.234 337 211 7 18 349 13 340 2.38e-48 167
Msa0385400 MtrunA17_Chr7g0215961 29.907 321 199 6 46 359 33 334 8.06e-47 163
Msa0385400 MtrunA17_Chr2g0294311 32.508 323 194 8 45 350 31 346 1.34e-46 162
Msa0385400 MtrunA17_Chr3g0099151 32.768 354 213 10 16 355 58 400 1.51e-46 164
Msa0385400 MtrunA17_Chr3g0099231 31.988 322 201 8 44 355 26 339 1.00e-45 160
Msa0385400 MtrunA17_Chr4g0027571 38.785 214 130 1 148 360 2 215 2.88e-45 155
Msa0385400 MtrunA17_Chr5g0396511 30.968 310 207 4 51 356 51 357 6.08e-45 158
Msa0385400 MtrunA17_Chr8g0380031 32.239 335 206 8 22 352 63 380 2.39e-43 155
Msa0385400 MtrunA17_Chr2g0301641 30.791 354 224 7 17 358 14 358 3.19e-43 154
Msa0385400 MtrunA17_Chr2g0284991 32.353 340 211 11 17 349 3 330 6.28e-43 153
Msa0385400 MtrunA17_Chr8g0344941 32.390 318 203 6 46 356 41 353 2.44e-42 151
Msa0385400 MtrunA17_Chr2g0284921 32.278 316 194 8 42 350 30 332 2.53e-41 148
Msa0385400 MtrunA17_Chr3g0085881 31.847 314 188 10 44 350 31 325 3.65e-41 148
Msa0385400 MtrunA17_Chr5g0444401 30.769 325 202 7 44 355 26 340 6.94e-41 147
Msa0385400 MtrunA17_Chr8g0344931 31.132 318 202 7 46 358 37 342 2.81e-39 143
Msa0385400 MtrunA17_Chr2g0284951 31.940 335 205 12 22 349 8 326 3.67e-39 143
Msa0385400 MtrunA17_Chr5g0420811 32.733 333 194 12 24 348 15 325 2.06e-38 140
Msa0385400 MtrunA17_Chr8g0349341 31.871 342 210 11 23 352 10 340 1.24e-36 136
Msa0385400 MtrunA17_Chr7g0229591 38.049 205 121 1 15 219 5 203 1.79e-35 129
Msa0385400 MtrunA17_Chr7g0229581 45.390 141 76 1 221 360 8 148 3.92e-35 126
Msa0385400 MtrunA17_Chr8g0349321 31.962 316 194 10 46 352 37 340 1.20e-34 130
Msa0385400 MtrunA17_Chr2g0284941 30.094 319 174 11 44 351 31 311 9.39e-34 128
Msa0385400 MtrunA17_Chr3g0085231 30.294 340 206 10 17 350 10 324 2.98e-33 126
Msa0385400 MtrunA17_Chr8g0370981 28.851 409 219 13 23 368 19 418 3.38e-33 127
Msa0385400 MtrunA17_Chr2g0285001 30.530 321 205 12 44 358 31 339 8.74e-33 126
Msa0385400 MtrunA17_Chr8g0370951 28.125 352 213 12 21 348 4 339 9.31e-32 123
Msa0385400 MtrunA17_Chr8g0349301 31.457 302 188 10 23 317 10 299 4.29e-31 120
Msa0385400 MtrunA17_Chr1g0160011 30.194 361 212 14 19 350 9 358 1.98e-30 119
Msa0385400 MtrunA17_Chr8g0349331 28.704 324 178 8 41 352 26 308 4.35e-29 115
Msa0385400 MtrunA17_Chr1g0160031 29.191 346 205 13 41 359 34 366 2.15e-28 114
Msa0385400 MtrunA17_Chr4g0018571 38.462 156 95 1 209 363 19 174 9.68e-28 107
Msa0385400 MtrunA17_Chr2g0301581 31.092 357 202 14 18 355 9 340 1.13e-27 111
Msa0385400 MtrunA17_Chr2g0283481 29.692 357 220 13 16 352 21 366 1.67e-27 112
Msa0385400 MtrunA17_Chr2g0283511 30.556 324 196 13 51 352 36 352 7.16e-27 110
Msa0385400 MtrunA17_Chr6g0469511 48.214 112 58 0 44 155 28 139 7.20e-27 103
Msa0385400 MtrunA17_Chr1g0159991 29.235 366 214 15 19 352 6 358 1.05e-26 109
Msa0385400 MtrunA17_Chr7g0273101 27.794 349 209 12 41 359 24 359 1.73e-26 108
Msa0385400 MtrunA17_Chr3g0104821 29.290 338 198 15 46 356 44 367 4.53e-26 107
Msa0385400 MtrunA17_Chr2g0301541 30.532 357 204 14 18 355 9 340 6.93e-26 106
Msa0385400 MtrunA17_Chr7g0254461 26.064 376 233 13 15 359 15 376 1.27e-25 106
Msa0385400 MtrunA17_Chr6g0469521 43.802 121 67 1 221 340 32 152 5.93e-25 99.4
Msa0385400 MtrunA17_Chr1g0191461 26.301 346 221 9 41 361 26 362 8.92e-25 103
Msa0385400 MtrunA17_Chr4g0027561 46.721 122 59 1 16 137 6 121 1.37e-24 97.8
Msa0385400 MtrunA17_Chr8g0370961 27.311 238 156 6 140 366 11 242 2.73e-24 100
Msa0385400 MtrunA17_Chr6g0459921 33.023 215 132 5 144 351 127 336 5.65e-24 101
Msa0385400 MtrunA17_Chr1g0159981 27.855 359 221 14 18 349 18 365 9.72e-24 101
Msa0385400 MtrunA17_Chr1g0159971 26.400 375 224 15 13 352 12 369 3.13e-23 99.8
Msa0385400 MtrunA17_Chr2g0283501 29.499 339 203 15 46 359 31 358 3.21e-23 99.8
Msa0385400 MtrunA17_Chr7g0271551 27.976 336 201 15 45 359 34 349 3.24e-23 99.4
Msa0385400 MtrunA17_Chr1g0160101 28.235 340 193 13 45 350 41 363 3.79e-23 99.8
Msa0385400 MtrunA17_Chr6g0455661 32.093 215 134 5 144 351 238 447 4.75e-23 100
Msa0385400 MtrunA17_Chr6g0455661 38.400 125 66 4 24 143 6 124 1.81e-14 74.3
Msa0385400 MtrunA17_Chr7g0275291 27.105 380 222 13 13 359 3 360 1.29e-22 97.8
Msa0385400 MtrunA17_Chr8g0381581 25.706 354 218 14 41 362 35 375 2.03e-22 97.4
Msa0385400 MtrunA17_Chr3g0112821 26.994 326 212 12 46 355 30 345 3.34e-21 93.6
Msa0385400 MtrunA17_Chr6g0450731 26.667 360 227 13 15 356 2 342 3.70e-21 93.6
Msa0385400 MtrunA17_Chr4g0027581 35.135 148 73 2 236 360 41 188 8.59e-20 86.7
Msa0385400 MtrunA17_Chr2g0317271 26.685 356 224 14 18 356 3 338 9.33e-20 89.4
Msa0385400 MtrunA17_Chr2g0301551 30.389 283 159 11 92 355 33 296 1.27e-19 88.6
Msa0385400 MtrunA17_Chr6g0450701 25.858 379 230 12 15 359 2 363 1.62e-19 89.0
Msa0385400 MtrunA17_Chr1g0198351 25.444 338 215 12 41 366 38 350 1.69e-19 88.6
Msa0385400 MtrunA17_Chr7g0226941 25.926 351 215 12 40 359 27 363 1.95e-19 88.6
Msa0385400 MtrunA17_Chr2g0317261 27.528 356 221 15 18 356 3 338 3.15e-19 87.8
Msa0385400 MtrunA17_Chr3g0093031 25.620 363 230 16 18 355 3 350 3.23e-19 88.2
Msa0385400 MtrunA17_Chr6g0450721 27.035 344 215 11 30 356 16 340 5.92e-19 87.0
Msa0385400 MtrunA17_Chr0c01g0489571 27.273 352 219 14 22 356 7 338 7.10e-19 87.0
Msa0385400 MtrunA17_Chr2g0301571 30.035 283 160 12 92 355 33 296 9.58e-19 85.9
Msa0385400 MtrunA17_Chr0c01g0489581 26.989 352 220 14 22 356 7 338 1.19e-18 86.3
Msa0385400 MtrunA17_Chr6g0450711 28.107 338 201 12 45 356 121 442 1.25e-18 87.0
Msa0385400 MtrunA17_Chr8g0347751 26.437 348 206 14 46 359 36 367 2.56e-18 85.5
Msa0385400 MtrunA17_Chr1g0189921 47.126 87 45 1 46 132 31 116 3.90e-17 77.8
Msa0385400 MtrunA17_Chr1g0178941 26.380 326 205 14 47 354 41 349 4.93e-17 81.6
Msa0385400 MtrunA17_Chr5g0440501 23.005 213 157 3 145 350 10 222 6.71e-17 79.7
Msa0385400 MtrunA17_Chr2g0283531 26.593 361 232 14 20 355 1 353 8.58e-17 80.9
Msa0385400 MtrunA17_Chr7g0266061 26.126 333 196 18 44 354 40 344 1.09e-16 80.5
Msa0385400 MtrunA17_Chr4g0057991 25.134 374 241 15 9 359 3 360 2.21e-16 79.7
Msa0385400 MtrunA17_Chr1g0178931 26.235 324 200 13 47 354 38 338 4.40e-16 78.6
Msa0385400 MtrunA17_Chr2g0301591 29.739 306 165 12 18 304 9 283 1.25e-15 76.6
Msa0385400 MtrunA17_Chr5g0432081 50.000 62 27 1 305 362 10 71 1.45e-15 71.2
Msa0385400 MtrunA17_Chr3g0112691 24.798 371 229 18 18 359 3 352 4.02e-15 75.9
Msa0385400 MtrunA17_Chr2g0321991 43.333 90 49 2 44 132 31 119 4.88e-15 71.2
Msa0385400 MtrunA17_Chr8g0370971 41.304 92 50 1 45 132 37 128 6.22e-14 69.3
Msa0385400 MtrunA17_Chr7g0228261 41.538 65 38 0 295 359 10 74 1.21e-13 66.2
Msa0385400 MtrunA17_Chr3g0104831 26.117 291 175 14 94 356 8 286 1.86e-13 70.5
Msa0385400 MtrunA17_Chr4g0018561 64.583 48 17 0 44 91 28 75 6.16e-13 64.3
Msa0385400 MtrunA17_Chr2g0308201 49.367 79 31 2 19 97 16 85 9.39e-13 63.5
Msa0385400 MtrunA17_Chr3g0096551 25.926 351 201 15 46 355 29 361 2.14e-12 67.8
Msa0385400 MtrunA17_Chr1g0189911 30.303 99 69 0 261 359 30 128 2.64e-12 64.3
Msa0385400 MtrunA17_Chr1g0198381 23.853 327 204 13 47 354 3 303 4.20e-12 66.2
Msa0385400 MtrunA17_Chr8g0339251 24.036 337 219 11 23 339 4 323 2.41e-11 64.3
Msa0385400 MtrunA17_Chr3g0104801 33.803 142 81 5 46 180 44 179 5.74e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385400 AT1G75900.1 58.841 345 140 2 23 366 20 363 1.07e-151 432
Msa0385400 AT1G75880.2 53.571 364 165 2 7 366 10 373 4.05e-138 398
Msa0385400 AT1G75880.1 53.699 365 164 3 7 366 10 374 6.85e-137 395
Msa0385400 AT1G75890.2 52.035 344 163 2 22 363 23 366 1.14e-133 386
Msa0385400 AT1G75890.3 52.035 344 163 2 22 363 52 395 1.45e-133 387
Msa0385400 AT5G42170.1 54.217 332 148 2 36 366 40 368 1.21e-131 381
Msa0385400 AT1G75890.1 50.140 357 163 3 22 363 23 379 3.58e-130 378
Msa0385400 AT3G14820.1 54.467 347 153 3 17 362 3 345 8.67e-130 376
Msa0385400 AT1G59406.1 52.000 350 160 6 19 366 5 348 3.43e-124 362
Msa0385400 AT1G59030.1 52.000 350 160 6 19 366 5 348 3.43e-124 362
Msa0385400 AT1G58725.1 52.000 350 160 6 19 366 5 348 3.43e-124 362
Msa0385400 AT1G58520.3 51.952 333 147 5 36 366 20 341 4.63e-115 338
Msa0385400 AT1G58525.1 51.952 333 147 5 36 366 20 341 4.63e-115 338
Msa0385400 AT1G20120.1 50.932 322 157 1 34 354 66 387 9.27e-114 337
Msa0385400 AT3G43570.1 48.286 350 147 5 18 366 3 319 1.30e-113 333
Msa0385400 AT1G20132.1 48.012 327 169 1 41 366 56 382 5.85e-105 314
Msa0385400 AT3G43550.1 52.577 291 129 4 16 305 4 286 4.25e-99 295
Msa0385400 AT1G73610.1 42.857 357 184 6 15 366 2 343 5.16e-95 287
Msa0385400 AT5G63170.1 47.097 310 149 4 44 351 26 322 3.56e-92 280
Msa0385400 AT5G45960.1 42.769 325 181 2 43 362 44 368 4.03e-92 281
Msa0385400 AT1G23500.1 47.152 316 152 4 41 354 30 332 8.56e-91 276
Msa0385400 AT1G06990.1 40.000 340 191 4 22 351 8 344 1.94e-89 273
Msa0385400 AT2G30310.1 40.730 356 206 4 16 368 6 359 1.89e-88 271
Msa0385400 AT2G04570.1 41.433 321 179 3 35 348 13 331 2.59e-88 270
Msa0385400 AT1G20130.2 41.420 338 184 4 41 367 179 513 1.12e-87 274
Msa0385400 AT1G20130.1 41.420 338 184 4 41 367 199 533 1.47e-87 274
Msa0385400 AT2G31540.1 39.276 359 215 3 13 368 2 360 1.57e-87 268
Msa0385400 AT2G30220.1 41.880 351 188 5 12 354 2 344 7.33e-87 267
Msa0385400 AT5G03810.1 43.087 311 175 2 44 352 28 338 2.96e-85 263
Msa0385400 AT2G24560.1 42.258 310 176 3 45 351 33 342 4.42e-85 262
Msa0385400 AT5G22810.1 43.125 320 178 2 44 359 32 351 1.43e-84 261
Msa0385400 AT2G42990.1 40.584 308 178 2 44 348 26 331 6.63e-84 259
Msa0385400 AT2G40250.1 41.337 329 184 3 40 361 30 356 9.36e-84 259
Msa0385400 AT1G58430.1 40.118 339 200 3 33 368 22 360 1.26e-83 258
Msa0385400 AT4G26790.1 39.514 329 196 3 36 362 18 345 2.29e-83 258
Msa0385400 AT4G26790.2 39.514 329 196 3 36 362 18 345 2.29e-83 258
Msa0385400 AT1G20135.1 41.401 314 171 5 43 355 26 327 9.76e-82 253
Msa0385400 AT3G16370.1 40.566 318 187 2 44 359 28 345 3.29e-81 252
Msa0385400 AT5G03820.1 41.066 319 185 2 44 359 31 349 1.97e-79 248
Msa0385400 AT5G03820.2 41.667 312 179 2 44 352 59 370 4.95e-79 248
Msa0385400 AT3G53100.1 39.812 319 191 1 44 361 27 345 1.99e-77 242
Msa0385400 AT1G75920.2 39.403 335 190 5 23 354 6 330 8.42e-75 235
Msa0385400 AT1G75920.1 37.714 350 190 6 23 354 1 340 9.24e-71 225
Msa0385400 AT5G45950.1 37.690 329 200 4 27 355 21 344 6.04e-70 223
Msa0385400 AT1G75910.1 38.170 317 184 4 41 354 23 330 8.58e-70 223
Msa0385400 AT1G75930.1 38.486 317 178 6 41 352 24 328 8.60e-63 204
Msa0385400 AT2G24560.2 40.530 264 154 3 45 305 33 296 1.46e-61 200
Msa0385400 AT1G75920.4 38.542 288 164 5 70 354 25 302 2.94e-61 199
Msa0385400 AT5G33370.1 34.066 364 215 8 11 363 2 351 1.89e-60 199
Msa0385400 AT4G28780.1 31.875 320 215 3 46 363 31 349 1.35e-59 197
Msa0385400 AT1G29670.1 32.738 336 217 6 19 350 5 335 9.72e-59 194
Msa0385400 AT1G29670.2 32.738 336 217 6 19 350 73 403 6.72e-58 194
Msa0385400 AT5G45670.1 32.239 335 217 7 20 350 6 334 9.98e-58 192
Msa0385400 AT1G71691.2 37.621 311 183 8 44 350 53 356 3.08e-57 191
Msa0385400 AT5G08460.1 33.119 311 201 5 45 349 48 357 2.61e-56 189
Msa0385400 AT1G33811.1 32.464 345 217 10 19 350 3 344 2.63e-56 188
Msa0385400 AT1G75920.3 34.030 335 177 6 23 354 6 299 7.30e-56 186
Msa0385400 AT4G18970.1 32.476 311 203 5 44 350 26 333 1.14e-55 186
Msa0385400 AT4G18970.2 32.476 311 203 5 44 350 26 333 3.40e-55 186
Msa0385400 AT5G18430.1 31.661 319 211 3 46 359 28 344 2.20e-54 183
Msa0385400 AT3G50400.1 31.105 344 228 6 16 350 4 347 3.92e-54 183
Msa0385400 AT5G15720.1 35.202 321 194 10 44 356 28 342 6.99e-54 182
Msa0385400 AT3G04290.1 31.212 330 212 6 38 359 21 343 1.29e-53 181
Msa0385400 AT1G71250.1 31.231 333 220 5 25 350 16 346 1.25e-52 179
Msa0385400 AT5G55050.1 34.545 330 198 9 42 359 35 358 1.40e-52 179
Msa0385400 AT2G23540.1 32.803 314 201 6 46 350 48 360 2.73e-52 178
Msa0385400 AT2G31550.1 38.356 219 133 2 152 368 1 219 9.78e-52 172
Msa0385400 AT5G41890.1 35.202 321 181 9 50 350 35 348 1.11e-50 174
Msa0385400 AT1G74460.1 31.579 323 213 7 50 368 27 345 1.31e-50 173
Msa0385400 AT5G37690.1 30.836 347 220 9 17 355 1 335 2.05e-50 172
Msa0385400 AT1G29660.1 30.631 333 217 7 22 350 14 336 4.00e-50 172
Msa0385400 AT4G10950.2 29.712 313 209 5 44 350 69 376 1.10e-45 161
Msa0385400 AT5G37690.2 29.651 344 220 9 17 355 1 327 1.91e-45 159
Msa0385400 AT1G71120.1 33.228 316 195 8 43 352 28 333 3.81e-45 159
Msa0385400 AT2G19010.1 34.076 314 182 11 44 350 28 323 4.62e-45 158
Msa0385400 AT2G19010.2 34.076 314 182 11 44 350 58 353 7.70e-45 158
Msa0385400 AT2G19060.1 31.737 334 198 13 44 368 28 340 6.88e-44 155
Msa0385400 AT5G33370.2 33.993 303 178 7 11 305 2 290 2.27e-43 153
Msa0385400 AT2G19050.1 30.791 354 213 13 24 368 9 339 3.28e-43 153
Msa0385400 AT1G53920.1 29.912 341 226 7 25 358 27 361 3.54e-43 154
Msa0385400 AT4G10950.1 29.712 313 205 6 44 350 69 372 5.70e-43 154
Msa0385400 AT2G03980.2 33.544 316 185 12 45 348 42 344 5.17e-38 140
Msa0385400 AT2G03980.3 33.544 316 185 12 45 348 42 344 5.17e-38 140
Msa0385400 AT2G03980.1 33.544 316 185 12 45 348 42 344 5.17e-38 140
Msa0385400 AT2G03980.4 33.544 316 185 12 45 348 42 344 5.17e-38 140
Msa0385400 AT4G30140.1 32.907 313 185 12 44 350 31 324 1.01e-37 139
Msa0385400 AT1G53940.2 30.488 328 203 10 46 358 39 356 7.27e-37 137
Msa0385400 AT1G71691.3 36.090 266 159 8 44 305 53 311 1.09e-36 135
Msa0385400 AT5G40990.1 30.745 322 210 7 46 358 37 354 2.15e-36 136
Msa0385400 AT3G14225.1 28.704 324 218 6 46 358 37 358 7.57e-36 134
Msa0385400 AT5G15720.2 33.829 269 167 8 44 305 28 292 2.27e-35 132
Msa0385400 AT3G14225.2 28.571 322 217 6 46 358 37 354 6.07e-35 132
Msa0385400 AT1G71691.1 32.432 259 165 7 96 350 3 255 6.09e-35 130
Msa0385400 AT1G54790.3 29.275 345 201 12 45 359 31 362 7.95e-34 129
Msa0385400 AT4G16230.1 38.537 205 120 4 44 244 28 230 1.07e-33 125
Msa0385400 AT5G15720.3 31.660 259 166 8 106 356 56 311 6.29e-33 125
Msa0385400 AT2G19050.2 31.273 275 170 9 24 292 9 270 1.23e-32 124
Msa0385400 AT3G05180.1 28.446 341 209 9 45 359 35 366 2.62e-31 122
Msa0385400 AT1G53990.1 27.795 331 201 12 46 358 35 345 1.22e-30 120
Msa0385400 AT1G28590.1 29.041 365 214 15 16 352 9 356 1.26e-28 115
Msa0385400 AT1G28610.2 30.484 351 187 16 44 359 29 357 2.75e-28 114
Msa0385400 AT2G04020.1 35.455 220 117 8 45 252 42 248 1.69e-27 109
Msa0385400 AT1G28580.1 28.763 372 228 14 14 359 4 364 2.32e-27 111
Msa0385400 AT2G27360.1 30.409 342 197 12 46 359 33 361 6.39e-27 110
Msa0385400 AT5G14450.1 27.322 366 227 10 22 359 17 371 6.89e-27 110
Msa0385400 AT2G04020.2 34.211 228 125 8 45 260 42 256 8.17e-27 108
Msa0385400 AT1G54790.1 25.543 368 229 13 23 359 8 361 1.11e-26 109
Msa0385400 AT1G53940.1 31.365 271 169 8 46 308 39 300 1.47e-26 107
Msa0385400 AT1G28640.1 28.190 337 210 13 46 359 35 362 2.84e-26 108
Msa0385400 AT1G28600.1 28.455 369 228 14 13 359 3 357 3.25e-25 105
Msa0385400 AT3G26430.1 29.462 353 184 15 40 350 25 354 4.63e-25 105
Msa0385400 AT4G01130.1 27.666 347 203 13 46 359 34 365 1.83e-24 103
Msa0385400 AT1G31550.2 29.204 339 195 16 46 355 36 358 2.50e-24 103
Msa0385400 AT1G56670.1 28.406 345 202 15 45 365 39 362 2.73e-24 102
Msa0385400 AT1G28670.1 28.571 336 211 11 46 359 35 363 5.18e-24 102
Msa0385400 AT1G28570.1 29.124 388 219 15 1 359 1 361 7.21e-24 102
Msa0385400 AT1G28650.1 27.095 358 232 11 24 359 14 364 7.53e-24 102
Msa0385400 AT1G09390.1 28.045 353 214 14 17 350 13 344 1.53e-23 100
Msa0385400 AT1G54030.1 27.869 305 198 9 47 350 53 336 2.32e-22 98.2
Msa0385400 AT1G31550.1 28.402 338 196 16 46 355 36 355 5.24e-22 96.7
Msa0385400 AT1G28660.1 27.807 374 227 15 15 359 3 362 8.74e-22 95.9
Msa0385400 AT1G54790.2 24.873 394 225 16 23 359 8 387 9.90e-22 96.3
Msa0385400 AT1G54020.2 26.590 346 219 13 24 359 11 331 1.46e-21 95.1
Msa0385400 AT1G54000.1 26.727 333 218 10 24 348 14 328 7.69e-21 93.2
Msa0385400 AT5G45910.1 28.125 384 223 18 20 367 1 367 1.08e-20 92.8
Msa0385400 AT4G01130.3 27.915 283 165 10 110 359 3 279 1.35e-20 91.3
Msa0385400 AT1G28660.2 27.807 374 226 16 15 359 3 361 1.75e-20 92.0
Msa0385400 AT5G03610.1 25.538 325 209 11 47 358 44 348 2.23e-20 91.7
Msa0385400 AT3G48460.1 26.289 388 223 18 8 359 1 361 2.27e-19 89.0
Msa0385400 AT1G67830.1 25.284 352 210 13 45 360 29 363 4.33e-19 88.2
Msa0385400 AT1G54010.1 25.000 332 225 9 24 348 14 328 4.82e-19 88.2
Msa0385400 AT3G27950.1 26.571 350 222 11 23 350 10 346 7.02e-19 87.4
Msa0385400 AT3G62280.1 29.446 343 187 17 45 359 35 350 8.24e-19 87.0
Msa0385400 AT4G16233.1 40.217 92 54 1 259 349 11 102 9.38e-17 76.6
Msa0385400 AT4G01130.2 27.937 315 180 14 46 332 34 329 9.82e-17 80.9
Msa0385400 AT1G56670.2 28.571 280 160 13 45 305 39 297 1.69e-15 76.6
Msa0385400 AT4G16220.1 44.944 89 47 1 44 132 28 114 4.54e-15 74.7
Msa0385400 AT1G54030.2 27.376 263 163 9 47 304 53 292 1.06e-13 71.6
Msa0385400 AT3G14210.1 26.048 334 206 15 40 358 33 340 1.09e-13 72.0
Msa0385400 AT1G54020.1 24.809 262 169 10 107 359 3 245 3.00e-12 67.0
Msa0385400 AT1G54020.5 24.809 262 169 10 107 359 3 245 3.00e-12 67.0
Msa0385400 AT1G54020.3 24.809 262 169 10 107 359 3 245 3.00e-12 67.0
Msa0385400 AT2G36325.1 26.074 326 208 12 47 360 48 352 3.63e-12 67.4
Msa0385400 AT3G14220.1 23.885 314 209 9 45 348 31 324 3.83e-12 67.4
Msa0385400 AT3G62280.2 29.520 271 141 15 45 292 35 278 6.19e-11 63.2

Find 94 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAATAATATTAAGCTATT+TGG 0.132394 3_1:-88943828 None:intergenic
ATAATTCAGAATACATATTT+TGG 0.133098 3_1:+88946573 Msa0385400:CDS
GTCAATCGACCCACATATTT+TGG 0.162844 3_1:-88946650 None:intergenic
ATCTAACTCTTTGGAGAGTT+TGG 0.221727 3_1:-88946289 None:intergenic
CATCTGTTCACAATTGTAAT+TGG 0.237565 3_1:+88946742 Msa0385400:three_prime_UTR
AGATCGCTTGGTTTGAGATT+TGG 0.268644 3_1:-88945720 None:intergenic
GTTCCTGCACTCATAGCTTT+TGG 0.270619 3_1:+88943918 Msa0385400:CDS
GAATACATAGTGAAGCTTAA+AGG 0.291893 3_1:+88945952 Msa0385400:CDS
TGCTTCATTGTATTTCTCAT+TGG 0.293543 3_1:-88946250 None:intergenic
AATATAAATGACCCTACTAT+TGG 0.297842 3_1:-88946331 None:intergenic
CAGAGGCTCCTTTGACCATT+AGG 0.304522 3_1:-88946113 None:intergenic
TGCTTTGCTTCTGGTGCATC+TGG 0.313289 3_1:+88945756 Msa0385400:CDS
AAGTGCAATTTCCCTCCTTA+TGG 0.329907 3_1:+88943990 Msa0385400:CDS
ACTGGAGTATGCTTTGCTTC+TGG 0.338515 3_1:+88945747 Msa0385400:CDS
GTGGCTTTATTGAGTATGTT+TGG 0.349669 3_1:+88946781 Msa0385400:three_prime_UTR
GTGAAGATAATCTAACTCTT+TGG 0.356818 3_1:-88946298 None:intergenic
CAACTTGGAGCACGCAGAAT+TGG 0.361534 3_1:+88946156 Msa0385400:CDS
TCTGGTGCGAATAGTAAAAT+AGG 0.368387 3_1:-88946058 None:intergenic
AAGCTTTCTGTATACACTTT+CGG 0.369467 3_1:-88946612 None:intergenic
CATCACTTCCAGCTACTATA+AGG 0.370304 3_1:-88946023 None:intergenic
ACTCTAACTTGCCCAATAGT+AGG 0.371094 3_1:+88946319 Msa0385400:CDS
GGATATAAAGTTGCGGATAA+AGG 0.374731 3_1:+88946485 Msa0385400:intron
TTGTTCTCAGTTGAAGAGTT+AGG 0.379803 3_1:+88945666 Msa0385400:intron
TGTTTAGTGCAGCCCCTATT+GGG 0.384622 3_1:+88946181 Msa0385400:CDS
AATATGTATTCTGAATTATC+AGG 0.387799 3_1:-88946569 None:intergenic
GGAGATTCTATCATGGATAC+AGG 0.388121 3_1:+88943939 Msa0385400:CDS
AGGTGTGGTTGGAGAGAATA+GGG 0.393629 3_1:+88945972 Msa0385400:CDS
GTGTTTAGTGCAGCCCCTAT+TGG 0.394496 3_1:+88946180 Msa0385400:CDS
ATCTATATGTTGAAATTTGA+GGG 0.398940 3_1:+88946854 Msa0385400:three_prime_UTR
AATCTATATGTTGAAATTTG+AGG 0.399158 3_1:+88946853 Msa0385400:three_prime_UTR
TCCTGCTTATGCTGACCTAA+TGG 0.399190 3_1:+88946098 Msa0385400:CDS
CTTGCTGAACTCTCTCTATA+TGG 0.400568 3_1:+88943770 Msa0385400:exon
TGTGATGGTAAGTACCCAAT+AGG 0.401521 3_1:-88946195 None:intergenic
AAATCAGTCGGTGATTTCAT+TGG 0.402412 3_1:+88945906 Msa0385400:intron
ATATAAATGACCCTACTATT+GGG 0.404016 3_1:-88946330 None:intergenic
TGAATTAATTGACAATGAAA+AGG 0.430872 3_1:+88946943 Msa0385400:three_prime_UTR
CCCTCAAAATCTTGACCATA+AGG 0.434979 3_1:-88944005 None:intergenic
GTGATGGTAAGTACCCAATA+GGG 0.441957 3_1:-88946194 None:intergenic
CTTGAGAATGATATCAAGTA+AGG 0.448541 3_1:-88946367 None:intergenic
CCGTTGCAAAATCGACCTGT+TGG 0.457925 3_1:-88944035 None:intergenic
AATATCATAGTGCAGTTGTC+TGG 0.466366 3_1:-88946076 None:intergenic
TTTGAACATCTTTAGTTGAT+CGG 0.472275 3_1:-88945929 None:intergenic
GATAAAGGTTGTTGTGGTAC+AGG 0.474471 3_1:+88946500 Msa0385400:CDS
ACCATTAGGTCAGCATAAGC+AGG 0.475339 3_1:-88946099 None:intergenic
TTTGAGGGAGGGATTCCAAC+AGG 0.480838 3_1:+88944020 Msa0385400:CDS
TCCTTTAACGCCTAAAATAG+TGG 0.484726 3_1:+88945785 Msa0385400:CDS
TGTAGTTCTTCCAAAATATG+TGG 0.495162 3_1:+88946640 Msa0385400:CDS
AAACCAAGCGATCTTCCTAC+TGG 0.507244 3_1:+88945729 Msa0385400:CDS
AGATTTGGATCCAAATAAGC+TGG 0.507343 3_1:-88945705 None:intergenic
CTCTAACTTGCCCAATAGTA+GGG 0.518740 3_1:+88946320 Msa0385400:CDS
TTTCTGTATACACTTTCGGT+TGG 0.527788 3_1:-88946608 None:intergenic
TATATACCTATCAAGTCTGA+TGG 0.528276 3_1:-88944065 None:intergenic
CAGGACAAGTGGCACTCAAA+GGG 0.531905 3_1:-88946550 None:intergenic
AAGGTGTGGTTGGAGAGAAT+AGG 0.534567 3_1:+88945971 Msa0385400:CDS
ATTAAGGAAATATATCAACT+TGG 0.538446 3_1:+88946141 Msa0385400:CDS
GTGAAGCTTAAAGGTGTGGT+TGG 0.538530 3_1:+88945961 Msa0385400:CDS
ATCGTATAGAACGAATGCAT+TGG 0.545694 3_1:+88943872 Msa0385400:CDS
TAAGGAAAAGAGTATTTGCT+AGG 0.548012 3_1:-88946005 None:intergenic
TCAGGACAAGTGGCACTCAA+AGG 0.553804 3_1:-88946551 None:intergenic
GCGAATAGTAAAATAGGTGT+TGG 0.556326 3_1:-88946052 None:intergenic
TCTCCAAAAGCTATGAGTGC+AGG 0.557089 3_1:-88943921 None:intergenic
GCAGGAACTGTAACATTTGG+TGG 0.559617 3_1:-88943903 None:intergenic
GAGTTTGGAGTTGAATAACT+TGG 0.562850 3_1:-88946274 None:intergenic
TTACCATCACAGAAGACTCT+AGG 0.572011 3_1:+88946207 Msa0385400:CDS
TTCTGAATTATCAGGACAAG+TGG 0.574457 3_1:-88946561 None:intergenic
GTTGCGGATAAAGGTTGTTG+TGG 0.574838 3_1:+88946494 Msa0385400:CDS
AGTGCAGGAACTGTAACATT+TGG 0.575059 3_1:-88943906 None:intergenic
CTATTTGGTGAATAAGTGCT+AGG 0.575285 3_1:-88943813 None:intergenic
GAGGGGTTGAACTTACTACA+AGG 0.584717 3_1:+88946872 Msa0385400:three_prime_UTR
ACTCCAGTAGGAAGATCGCT+TGG 0.585216 3_1:-88945732 None:intergenic
GAAGCAAAGCATACTCCAGT+AGG 0.590600 3_1:-88945744 None:intergenic
CCACCTAGAGTCTTCTGTGA+TGG 0.593938 3_1:-88946210 None:intergenic
TTGGAGTGTGAAACTGCATA+TGG 0.594535 3_1:+88946800 Msa0385400:three_prime_UTR
TAGTAAAATAGGTGTTGGCA+AGG 0.594605 3_1:-88946047 None:intergenic
TCTATATGTTGAAATTTGAG+GGG 0.598354 3_1:+88946855 Msa0385400:three_prime_UTR
CAAAATCTTGACCATAAGGA+GGG 0.599329 3_1:-88944001 None:intergenic
ATCACAGAAGACTCTAGGTG+GGG 0.606452 3_1:+88946212 Msa0385400:CDS
TATGCTGACCTAATGGTCAA+AGG 0.606777 3_1:+88946105 Msa0385400:CDS
ATATAGAGAGAGTTCAGCAA+GGG 0.613794 3_1:-88943768 None:intergenic
CATAGTGAAGCTTAAAGGTG+TGG 0.614858 3_1:+88945957 Msa0385400:CDS
TATTTCCTTAATAAAATCAG+AGG 0.620327 3_1:-88946130 None:intergenic
TCAAAATCTTGACCATAAGG+AGG 0.620952 3_1:-88944002 None:intergenic
GTAGTTCTTCCAAAATATGT+GGG 0.621430 3_1:+88946641 Msa0385400:CDS
TTGAGAATGATATCAAGTAA+GGG 0.622870 3_1:-88946366 None:intergenic
TTGTGGTACAGGAAAGCTAG+AGG 0.630213 3_1:+88946511 Msa0385400:CDS
AGGGGTTGAACTTACTACAA+GGG 0.632273 3_1:+88946873 Msa0385400:three_prime_UTR
CATCACAGAAGACTCTAGGT+GGG 0.635304 3_1:+88946211 Msa0385400:CDS
CCATCACAGAAGACTCTAGG+TGG 0.643895 3_1:+88946210 Msa0385400:CDS
AAGTGTATACAGAAAGCTTG+TGG 0.647850 3_1:+88946616 Msa0385400:CDS
AAATGCAGGATATAAAGTTG+CGG 0.654000 3_1:+88946478 Msa0385400:intron
CATATAGAGAGAGTTCAGCA+AGG 0.663146 3_1:-88943769 None:intergenic
TGATGGTAAGTACCCAATAG+GGG 0.663546 3_1:-88946193 None:intergenic
TCACAGAAGACTCTAGGTGG+GGG 0.675044 3_1:+88946213 Msa0385400:CDS
CATACTCAATAAAGCCACTG+TGG 0.714366 3_1:-88946776 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAATTTTTTATTTTTTGA+AGG - chr3_1:88944126-88944145 None:intergenic 10.0%
!! ATAAAAAATTCATATCTATA+TGG + chr3_1:88944133-88944152 Msa0385400:intron 10.0%
!!! ATATATTTTTAAATACATTG+TGG + chr3_1:88944184-88944203 Msa0385400:intron 10.0%
!! ATTATTTACAGTATATAATT+AGG - chr3_1:88944493-88944512 None:intergenic 10.0%
!! CATTTAATGAATTATATATT+AGG - chr3_1:88946463-88946482 None:intergenic 10.0%
!!! TGTGAATTTTTAAATTACAA+AGG - chr3_1:88944722-88944741 None:intergenic 15.0%
!! TTTGTAATATTCATTAAATG+TGG - chr3_1:88945359-88945378 None:intergenic 15.0%
!! TTATATTCAACAAAACTTTA+AGG - chr3_1:88945416-88945435 None:intergenic 15.0%
!!! ACATGCATTTTTTTTATATT+TGG - chr3_1:88945568-88945587 None:intergenic 15.0%
!! TCATATAGTAATTAATTACT+TGG + chr3_1:88945643-88945662 Msa0385400:intron 15.0%
!!! AATTTTTTTTACAAATCAGT+CGG + chr3_1:88945894-88945913 Msa0385400:intron 15.0%
!!! TAATTACTTACCATATTTTT+GGG - chr3_1:88946394-88946413 None:intergenic 15.0%
!!! TTAATTACTTACCATATTTT+TGG - chr3_1:88946395-88946414 None:intergenic 15.0%
!! ATATATAATTCATTAAATGC+AGG + chr3_1:88946464-88946483 Msa0385400:intron 15.0%
!!! ATAATTCAGAATACATATTT+TGG + chr3_1:88946573-88946592 Msa0385400:CDS 15.0%
!!! TAATTCAGAATACATATTTT+GGG + chr3_1:88946574-88946593 Msa0385400:CDS 15.0%
!! CGTAATAATATTAAGCTATT+TGG - chr3_1:88943831-88943850 None:intergenic 20.0%
!!! AAGCTTGATTTAAAATGTTA+AGG - chr3_1:88944235-88944254 None:intergenic 20.0%
!!! AAACAAAATTTTCAAGGTTT+TGG - chr3_1:88944415-88944434 None:intergenic 20.0%
!!! TTACACAAACAAAATTTTCA+AGG - chr3_1:88944421-88944440 None:intergenic 20.0%
!! TTAAATTACAAAGGTTTCAT+GGG - chr3_1:88944713-88944732 None:intergenic 20.0%
!! TTTAAATTACAAAGGTTTCA+TGG - chr3_1:88944714-88944733 None:intergenic 20.0%
!! TAAAAATTCACATATTTGCT+TGG + chr3_1:88944730-88944749 Msa0385400:intron 20.0%
!! AAGAAAAAAGTAGTTGAAAA+CGG + chr3_1:88945058-88945077 Msa0385400:intron 20.0%
!!! ATTTTCTACTATTTTGAACT+AGG - chr3_1:88945208-88945227 None:intergenic 20.0%
!!! TTTTGAATTAACTTTGTCAT+TGG + chr3_1:88945510-88945529 Msa0385400:intron 20.0%
!! TTTGAATTAACTTTGTCATT+GGG + chr3_1:88945511-88945530 Msa0385400:intron 20.0%
!! TATTTCCTTAATAAAATCAG+AGG - chr3_1:88946133-88946152 None:intergenic 20.0%
!! ATTAAGGAAATATATCAACT+TGG + chr3_1:88946141-88946160 Msa0385400:CDS 20.0%
!!! AATTACTTACCATATTTTTG+GGG - chr3_1:88946393-88946412 None:intergenic 20.0%
!! AATATGTATTCTGAATTATC+AGG - chr3_1:88946572-88946591 None:intergenic 20.0%
!! AATCTATATGTTGAAATTTG+AGG + chr3_1:88946853-88946872 Msa0385400:three_prime_UTR 20.0%
!! ATCTATATGTTGAAATTTGA+GGG + chr3_1:88946854-88946873 Msa0385400:three_prime_UTR 20.0%
! AATGTTAAGGTTGTAAAACA+AGG - chr3_1:88944222-88944241 None:intergenic 25.0%
! AGTGTTAAACATTGATAAAG+TGG + chr3_1:88944257-88944276 Msa0385400:intron 25.0%
!!! TTTTTTGTTGTCAAAAGATC+AGG + chr3_1:88944627-88944646 Msa0385400:intron 25.0%
! TTGTATCGAAATTCAATCAT+TGG + chr3_1:88944677-88944696 Msa0385400:intron 25.0%
!!! TGTTTTTTTTACTGATAACG+TGG + chr3_1:88945107-88945126 Msa0385400:intron 25.0%
! TTTGAACTAGGATTAACTAA+AGG - chr3_1:88945196-88945215 None:intergenic 25.0%
! TTTGAACATCTTTAGTTGAT+CGG - chr3_1:88945932-88945951 None:intergenic 25.0%
! ATATAAATGACCCTACTATT+GGG - chr3_1:88946333-88946352 None:intergenic 25.0%
! AATATAAATGACCCTACTAT+TGG - chr3_1:88946334-88946353 None:intergenic 25.0%
! TTGAGAATGATATCAAGTAA+GGG - chr3_1:88946369-88946388 None:intergenic 25.0%
! TCTATATGTTGAAATTTGAG+GGG + chr3_1:88946855-88946874 Msa0385400:three_prime_UTR 25.0%
AAAAATCCATCAGACTTGAT+AGG + chr3_1:88944059-88944078 Msa0385400:CDS 30.0%
TATATACCTATCAAGTCTGA+TGG - chr3_1:88944068-88944087 None:intergenic 30.0%
!!! TTTTCAAGGTTTTGGCTTTT+GGG - chr3_1:88944407-88944426 None:intergenic 30.0%
!!! ATTTTCAAGGTTTTGGCTTT+TGG - chr3_1:88944408-88944427 None:intergenic 30.0%
!!! CTTTTTAATTTGACACCTTC+TGG + chr3_1:88944441-88944460 Msa0385400:intron 30.0%
!!! TGATTAGTTTTTTCTCCAGA+AGG - chr3_1:88944459-88944478 None:intergenic 30.0%
! ACCAAATGAAAACGATGTTT+TGG + chr3_1:88944758-88944777 Msa0385400:intron 30.0%
! ACCAAAACATCGTTTTCATT+TGG - chr3_1:88944762-88944781 None:intergenic 30.0%
ATTAATTGAGCCTCATTAGA+AGG + chr3_1:88944789-88944808 Msa0385400:intron 30.0%
ATTGTCAGTAGAGAATAATG+TGG + chr3_1:88945082-88945101 Msa0385400:intron 30.0%
! TTCATCCATACCACTATTTT+AGG - chr3_1:88945798-88945817 None:intergenic 30.0%
GAATACATAGTGAAGCTTAA+AGG + chr3_1:88945952-88945971 Msa0385400:CDS 30.0%
!! TAAGGAAAAGAGTATTTGCT+AGG - chr3_1:88946008-88946027 None:intergenic 30.0%
TGCTTCATTGTATTTCTCAT+TGG - chr3_1:88946253-88946272 None:intergenic 30.0%
GTGAAGATAATCTAACTCTT+TGG - chr3_1:88946301-88946320 None:intergenic 30.0%
CTTGAGAATGATATCAAGTA+AGG - chr3_1:88946370-88946389 None:intergenic 30.0%
AAATGCAGGATATAAAGTTG+CGG + chr3_1:88946478-88946497 Msa0385400:intron 30.0%
AAGCTTTCTGTATACACTTT+CGG - chr3_1:88946615-88946634 None:intergenic 30.0%
TGTAGTTCTTCCAAAATATG+TGG + chr3_1:88946640-88946659 Msa0385400:CDS 30.0%
GTAGTTCTTCCAAAATATGT+GGG + chr3_1:88946641-88946660 Msa0385400:CDS 30.0%
CATCTGTTCACAATTGTAAT+TGG + chr3_1:88946742-88946761 Msa0385400:three_prime_UTR 30.0%
! TGTCCTCTAAAAACAAAACA+TGG - chr3_1:88946826-88946845 None:intergenic 30.0%
!!! GGATAGCTTTTTCATCTCTT+TGG - chr3_1:88943750-88943769 None:intergenic 35.0%
ATATAGAGAGAGTTCAGCAA+GGG - chr3_1:88943771-88943790 None:intergenic 35.0%
! CTATTTGGTGAATAAGTGCT+AGG - chr3_1:88943816-88943835 None:intergenic 35.0%
ATCGTATAGAACGAATGCAT+TGG + chr3_1:88943872-88943891 Msa0385400:CDS 35.0%
!! AGCTTTTGGAGATTCTATCA+TGG + chr3_1:88943932-88943951 Msa0385400:CDS 35.0%
CAAAATCTTGACCATAAGGA+GGG - chr3_1:88944004-88944023 None:intergenic 35.0%
TCAAAATCTTGACCATAAGG+AGG - chr3_1:88944005-88944024 None:intergenic 35.0%
! TCCTTATGGTCAAGATTTTG+AGG + chr3_1:88944004-88944023 Msa0385400:CDS 35.0%
! CCTTATGGTCAAGATTTTGA+GGG + chr3_1:88944005-88944024 Msa0385400:CDS 35.0%
CTTCTTTCGTCATTGTCATA+TGG + chr3_1:88944335-88944354 Msa0385400:intron 35.0%
GCCTATGAGATGACATATAA+GGG + chr3_1:88944380-88944399 Msa0385400:intron 35.0%
!!! TTTCAAGGTTTTGGCTTTTG+GGG - chr3_1:88944406-88944425 None:intergenic 35.0%
TTGTTGTCAAAAGATCAGGA+AGG + chr3_1:88944631-88944650 Msa0385400:intron 35.0%
TTGAATGAGTGATACGTCAA+TGG + chr3_1:88944884-88944903 Msa0385400:intron 35.0%
!! AGAGCAAGGCATTTTTATCA+TGG + chr3_1:88944909-88944928 Msa0385400:intron 35.0%
ATGGTAATTACTTGGAAGTC+TGG - chr3_1:88944946-88944965 None:intergenic 35.0%
! TCTAGCTCATGGTAATTACT+TGG - chr3_1:88944954-88944973 None:intergenic 35.0%
CAAAGTTAAAAACACAAGCC+TGG - chr3_1:88944990-88945009 None:intergenic 35.0%
TTGTTCTCAGTTGAAGAGTT+AGG + chr3_1:88945666-88945685 Msa0385400:intron 35.0%
! AGAGCTTTTACCAGCTTATT+TGG + chr3_1:88945695-88945714 Msa0385400:CDS 35.0%
AGATTTGGATCCAAATAAGC+TGG - chr3_1:88945708-88945727 None:intergenic 35.0%
TCCTTTAACGCCTAAAATAG+TGG + chr3_1:88945785-88945804 Msa0385400:CDS 35.0%
!! ACCACTATTTTAGGCGTTAA+AGG - chr3_1:88945789-88945808 None:intergenic 35.0%
TAACGCCTAAAATAGTGGTA+TGG + chr3_1:88945790-88945809 Msa0385400:intron 35.0%
AAATCAGTCGGTGATTTCAT+TGG + chr3_1:88945906-88945925 Msa0385400:intron 35.0%
! ACTCTTTTCCTTATAGTAGC+TGG + chr3_1:88946015-88946034 Msa0385400:CDS 35.0%
!! TAGTAAAATAGGTGTTGGCA+AGG - chr3_1:88946050-88946069 None:intergenic 35.0%
GCGAATAGTAAAATAGGTGT+TGG - chr3_1:88946055-88946074 None:intergenic 35.0%
TCTGGTGCGAATAGTAAAAT+AGG - chr3_1:88946061-88946080 None:intergenic 35.0%
AATATCATAGTGCAGTTGTC+TGG - chr3_1:88946079-88946098 None:intergenic 35.0%
! AGGAGCCTCTGATTTTATTA+AGG + chr3_1:88946125-88946144 Msa0385400:CDS 35.0%
! GAGTTTGGAGTTGAATAACT+TGG - chr3_1:88946277-88946296 None:intergenic 35.0%
! ATCTAACTCTTTGGAGAGTT+TGG - chr3_1:88946292-88946311 None:intergenic 35.0%
ATTCTCAAGCCCCAAAAATA+TGG + chr3_1:88946381-88946400 Msa0385400:CDS 35.0%
GGATATAAAGTTGCGGATAA+AGG + chr3_1:88946485-88946504 Msa0385400:intron 35.0%
TTCTGAATTATCAGGACAAG+TGG - chr3_1:88946564-88946583 None:intergenic 35.0%
TTTCTGTATACACTTTCGGT+TGG - chr3_1:88946611-88946630 None:intergenic 35.0%
AAGTGTATACAGAAAGCTTG+TGG + chr3_1:88946616-88946635 Msa0385400:CDS 35.0%
!! GTGGCTTTATTGAGTATGTT+TGG + chr3_1:88946781-88946800 Msa0385400:three_prime_UTR 35.0%
!!! TGGCCATGTTTTGTTTTTAG+AGG + chr3_1:88946820-88946839 Msa0385400:three_prime_UTR 35.0%
!! ACGTGCTAGCTATAGTTTTG+TGG + chr3_1:88943698-88943717 Msa0385400:five_prime_UTR 40.0%
CATATAGAGAGAGTTCAGCA+AGG - chr3_1:88943772-88943791 None:intergenic 40.0%
CTTGCTGAACTCTCTCTATA+TGG + chr3_1:88943770-88943789 Msa0385400:exon 40.0%
AGTGCAGGAACTGTAACATT+TGG - chr3_1:88943909-88943928 None:intergenic 40.0%
GGAGATTCTATCATGGATAC+AGG + chr3_1:88943939-88943958 Msa0385400:CDS 40.0%
AAGTGCAATTTCCCTCCTTA+TGG + chr3_1:88943990-88944009 Msa0385400:CDS 40.0%
CCCTCAAAATCTTGACCATA+AGG - chr3_1:88944008-88944027 None:intergenic 40.0%
!! TATGGTCAAGATTTTGAGGG+AGG + chr3_1:88944008-88944027 Msa0385400:CDS 40.0%
!! ATGGTCAAGATTTTGAGGGA+GGG + chr3_1:88944009-88944028 Msa0385400:CDS 40.0%
ATATGGCTGTGAGGAATTCA+TGG + chr3_1:88944352-88944371 Msa0385400:intron 40.0%
GGCCTATGAGATGACATATA+AGG + chr3_1:88944379-88944398 Msa0385400:intron 40.0%
GCCCTTATATGTCATCTCAT+AGG - chr3_1:88944384-88944403 None:intergenic 40.0%
ATACGTCAATGGATAGAGCA+AGG + chr3_1:88944895-88944914 Msa0385400:intron 40.0%
! ACATACTCATGTCTAGCTCA+TGG - chr3_1:88944965-88944984 None:intergenic 40.0%
! AGATCGCTTGGTTTGAGATT+TGG - chr3_1:88945723-88945742 None:intergenic 40.0%
CATAGTGAAGCTTAAAGGTG+TGG + chr3_1:88945957-88945976 Msa0385400:CDS 40.0%
CATCACTTCCAGCTACTATA+AGG - chr3_1:88946026-88946045 None:intergenic 40.0%
TATGCTGACCTAATGGTCAA+AGG + chr3_1:88946105-88946124 Msa0385400:CDS 40.0%
TGATGGTAAGTACCCAATAG+GGG - chr3_1:88946196-88946215 None:intergenic 40.0%
GTGATGGTAAGTACCCAATA+GGG - chr3_1:88946197-88946216 None:intergenic 40.0%
TGTGATGGTAAGTACCCAAT+AGG - chr3_1:88946198-88946217 None:intergenic 40.0%
TTACCATCACAGAAGACTCT+AGG + chr3_1:88946207-88946226 Msa0385400:CDS 40.0%
! ACTCTAACTTGCCCAATAGT+AGG + chr3_1:88946319-88946338 Msa0385400:CDS 40.0%
! CTCTAACTTGCCCAATAGTA+GGG + chr3_1:88946320-88946339 Msa0385400:CDS 40.0%
GATAAAGGTTGTTGTGGTAC+AGG + chr3_1:88946500-88946519 Msa0385400:CDS 40.0%
! GTCAATCGACCCACATATTT+TGG - chr3_1:88946653-88946672 None:intergenic 40.0%
!! TGGTTTTTGTTTCACCACAG+TGG + chr3_1:88946762-88946781 Msa0385400:three_prime_UTR 40.0%
CATACTCAATAAAGCCACTG+TGG - chr3_1:88946779-88946798 None:intergenic 40.0%
TTGGAGTGTGAAACTGCATA+TGG + chr3_1:88946800-88946819 Msa0385400:three_prime_UTR 40.0%
AGGGGTTGAACTTACTACAA+GGG + chr3_1:88946873-88946892 Msa0385400:three_prime_UTR 40.0%
GCAGGAACTGTAACATTTGG+TGG - chr3_1:88943906-88943925 None:intergenic 45.0%
! GTTCCTGCACTCATAGCTTT+TGG + chr3_1:88943918-88943937 Msa0385400:CDS 45.0%
TCTCCAAAAGCTATGAGTGC+AGG - chr3_1:88943924-88943943 None:intergenic 45.0%
!! CCAACAGGTCGATTTTGCAA+CGG + chr3_1:88944035-88944054 Msa0385400:CDS 45.0%
GTCATTGTCATATGGCTGTG+AGG + chr3_1:88944343-88944362 Msa0385400:intron 45.0%
CTGTGAGGAATTCATGGAGA+GGG + chr3_1:88944358-88944377 Msa0385400:intron 45.0%
! AAAGATCAGGAAGGTGTGTG+TGG + chr3_1:88944640-88944659 Msa0385400:intron 45.0%
GTGAGCTTCACCTTCTAATG+AGG - chr3_1:88944802-88944821 None:intergenic 45.0%
CTAGACATGAGTATGTGTCC+AGG + chr3_1:88944969-88944988 Msa0385400:intron 45.0%
AAACCAAGCGATCTTCCTAC+TGG + chr3_1:88945729-88945748 Msa0385400:CDS 45.0%
GAAGCAAAGCATACTCCAGT+AGG - chr3_1:88945747-88945766 None:intergenic 45.0%
ACTGGAGTATGCTTTGCTTC+TGG + chr3_1:88945747-88945766 Msa0385400:CDS 45.0%
! GTGAAGCTTAAAGGTGTGGT+TGG + chr3_1:88945961-88945980 Msa0385400:CDS 45.0%
AAGGTGTGGTTGGAGAGAAT+AGG + chr3_1:88945971-88945990 Msa0385400:CDS 45.0%
AGGTGTGGTTGGAGAGAATA+GGG + chr3_1:88945972-88945991 Msa0385400:CDS 45.0%
TCCTGCTTATGCTGACCTAA+TGG + chr3_1:88946098-88946117 Msa0385400:CDS 45.0%
ACCATTAGGTCAGCATAAGC+AGG - chr3_1:88946102-88946121 None:intergenic 45.0%
TGTTTAGTGCAGCCCCTATT+GGG + chr3_1:88946181-88946200 Msa0385400:CDS 45.0%
CATCACAGAAGACTCTAGGT+GGG + chr3_1:88946211-88946230 Msa0385400:CDS 45.0%
ATCACAGAAGACTCTAGGTG+GGG + chr3_1:88946212-88946231 Msa0385400:CDS 45.0%
GTTGCGGATAAAGGTTGTTG+TGG + chr3_1:88946494-88946513 Msa0385400:CDS 45.0%
TTGTGGTACAGGAAAGCTAG+AGG + chr3_1:88946511-88946530 Msa0385400:CDS 45.0%
GAGGGGTTGAACTTACTACA+AGG + chr3_1:88946872-88946891 Msa0385400:three_prime_UTR 45.0%
!! AATTAATTATATAATAAAGT+TGG - chr3_1:88945874-88945893 None:intergenic 5.0%
TTTGAGGGAGGGATTCCAAC+AGG + chr3_1:88944020-88944039 Msa0385400:CDS 50.0%
CCGTTGCAAAATCGACCTGT+TGG - chr3_1:88944038-88944057 None:intergenic 50.0%
GCTGTGAGGAATTCATGGAG+AGG + chr3_1:88944357-88944376 Msa0385400:intron 50.0%
ACTCCAGTAGGAAGATCGCT+TGG - chr3_1:88945735-88945754 None:intergenic 50.0%
TGCTTTGCTTCTGGTGCATC+TGG + chr3_1:88945756-88945775 Msa0385400:CDS 50.0%
CAGAGGCTCCTTTGACCATT+AGG - chr3_1:88946116-88946135 None:intergenic 50.0%
CAACTTGGAGCACGCAGAAT+TGG + chr3_1:88946156-88946175 Msa0385400:CDS 50.0%
GTGTTTAGTGCAGCCCCTAT+TGG + chr3_1:88946180-88946199 Msa0385400:CDS 50.0%
CCACCTAGAGTCTTCTGTGA+TGG - chr3_1:88946213-88946232 None:intergenic 50.0%
CCATCACAGAAGACTCTAGG+TGG + chr3_1:88946210-88946229 Msa0385400:CDS 50.0%
TCACAGAAGACTCTAGGTGG+GGG + chr3_1:88946213-88946232 Msa0385400:CDS 50.0%
CAGGACAAGTGGCACTCAAA+GGG - chr3_1:88946553-88946572 None:intergenic 50.0%
TCAGGACAAGTGGCACTCAA+AGG - chr3_1:88946554-88946573 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 88943694 88946964 88943694 ID=Msa0385400;Name=Msa0385400
chr3_1 mRNA 88943694 88946964 88943694 ID=Msa0385400-mRNA-1;Parent=Msa0385400;Name=Msa0385400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95|1|1|1|1|1|4|285|368
chr3_1 exon 88943694 88944080 88943694 ID=Msa0385400-mRNA-1:exon:24088;Parent=Msa0385400-mRNA-1
chr3_1 exon 88945676 88945806 88945676 ID=Msa0385400-mRNA-1:exon:24089;Parent=Msa0385400-mRNA-1
chr3_1 exon 88945913 88946402 88945913 ID=Msa0385400-mRNA-1:exon:24090;Parent=Msa0385400-mRNA-1
chr3_1 exon 88946486 88946964 88946486 ID=Msa0385400-mRNA-1:exon:24091;Parent=Msa0385400-mRNA-1
chr3_1 five_prime_UTR 88943694 88943788 88943694 ID=Msa0385400-mRNA-1:five_prime_utr;Parent=Msa0385400-mRNA-1
chr3_1 CDS 88943789 88944080 88943789 ID=Msa0385400-mRNA-1:cds;Parent=Msa0385400-mRNA-1
chr3_1 CDS 88945676 88945806 88945676 ID=Msa0385400-mRNA-1:cds;Parent=Msa0385400-mRNA-1
chr3_1 CDS 88945913 88946402 88945913 ID=Msa0385400-mRNA-1:cds;Parent=Msa0385400-mRNA-1
chr3_1 CDS 88946486 88946679 88946486 ID=Msa0385400-mRNA-1:cds;Parent=Msa0385400-mRNA-1
chr3_1 three_prime_UTR 88946680 88946964 88946680 ID=Msa0385400-mRNA-1:three_prime_utr;Parent=Msa0385400-mRNA-1
Gene Sequence

>Msa0385400

ATGGCTGTGTTTATGATGAAGCTGCCTAGCACTTATTCACCAAATAGCTTAATATTATTACGTTTCATGTTGTTGTTAGTTTTATCGTATAGAACGAATGCATTGGTTAAACTACCACCAAATGTTACAGTTCCTGCACTCATAGCTTTTGGAGATTCTATCATGGATACAGGAAATAACAATAACATCAAAACAATCGTCAAGTGCAATTTCCCTCCTTATGGTCAAGATTTTGAGGGAGGGATTCCAACAGGTCGATTTTGCAACGGAAAAAATCCATCAGACTTGATAGTTGAAGAGTTAGGTATTAAAGAGCTTTTACCAGCTTATTTGGATCCAAATCTCAAACCAAGCGATCTTCCTACTGGAGTATGCTTTGCTTCTGGTGCATCTGGATATGATCCTTTAACGCCTAAAATAGTGTCGGTGATTTCATTGGCCGATCAACTAAAGATGTTCAAAGAATACATAGTGAAGCTTAAAGGTGTGGTTGGAGAGAATAGGGCAAACTTCATCCTAGCAAATACTCTTTTCCTTATAGTAGCTGGAAGTGATGACCTTGCCAACACCTATTTTACTATTCGCACCAGACAACTGCACTATGATATTCCTGCTTATGCTGACCTAATGGTCAAAGGAGCCTCTGATTTTATTAAGGAAATATATCAACTTGGAGCACGCAGAATTGGAGTGTTTAGTGCAGCCCCTATTGGGTACTTACCATCACAGAAGACTCTAGGTGGGGGTGTATATAGAAAGACCAATGAGAAATACAATGAAGCAGCCAAGTTATTCAACTCCAAACTCTCCAAAGAGTTAGATTATCTTCACTCTAACTTGCCCAATAGTAGGGTCATTTATATTGATATTTACAGTCCCTTACTTGATATCATTCTCAAGCCCCAAAAATATGGATATAAAGTTGCGGATAAAGGTTGTTGTGGTACAGGAAAGCTAGAGGTTTCAGTGCTATGCAACCCTTTGAGTGCCACTTGTCCTGATAATTCAGAATACATATTTTGGGACAGTTATCATCCAACCGAAAGTGTATACAGAAAGCTTGTGGCTGTAGTTCTTCCAAAATATGTGGGTCGATTGACTGCATGA

Protein sequence

>Msa0385400

MAVFMMKLPSTYSPNSLILLRFMLLLVLSYRTNALVKLPPNVTVPALIAFGDSIMDTGNNNNIKTIVKCNFPPYGQDFEGGIPTGRFCNGKNPSDLIVEELGIKELLPAYLDPNLKPSDLPTGVCFASGASGYDPLTPKIVSVISLADQLKMFKEYIVKLKGVVGENRANFILANTLFLIVAGSDDLANTYFTIRTRQLHYDIPAYADLMVKGASDFIKEIYQLGARRIGVFSAAPIGYLPSQKTLGGGVYRKTNEKYNEAAKLFNSKLSKELDYLHSNLPNSRVIYIDIYSPLLDIILKPQKYGYKVADKGCCGTGKLEVSVLCNPLSATCPDNSEYIFWDSYHPTESVYRKLVAVVLPKYVGRLTA*