AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1347400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1347400 MtrunA17_Chr3g0118471 95.146 206 10 0 1 206 1 206 4.94e-129 361
Msa1347400 MtrunA17_Chr5g0395001 39.200 125 73 2 46 170 24 145 2.18e-18 78.6
Msa1347400 MtrunA17_Chr1g0205201 40.659 91 51 2 46 136 24 111 5.25e-16 72.0
Msa1347400 MtrunA17_Chr2g0278981 40.206 97 55 2 34 130 20 113 9.32e-16 72.4
Msa1347400 MtrunA17_Chr5g0429901 34.328 134 78 3 42 175 28 151 2.14e-15 71.2
Msa1347400 MtrunA17_Chr2g0278971 37.190 121 63 4 57 177 83 190 1.78e-14 69.3
Msa1347400 MtrunA17_Chr7g0260061 36.000 125 73 5 47 169 28 147 6.34e-13 64.7
Msa1347400 MtrunA17_Chr1g0205181 36.029 136 61 4 46 181 24 133 1.67e-12 62.8
Msa1347400 MtrunA17_Chr1g0205191 36.735 98 57 3 42 139 20 112 1.92e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1347400 AT3G43720.2 47.015 134 63 3 43 169 32 164 1.36e-28 106
Msa1347400 AT3G43720.1 46.324 136 63 3 43 169 32 166 8.08e-28 104
Msa1347400 AT2G27130.1 43.519 108 59 2 34 140 24 130 1.03e-23 93.2
Msa1347400 AT1G03103.1 35.443 158 85 5 49 204 24 166 4.33e-16 73.2
Msa1347400 AT3G22600.1 40.698 86 48 2 46 131 24 106 8.18e-16 72.4
Msa1347400 AT2G48130.2 33.645 107 68 2 50 156 30 133 2.22e-15 71.6
Msa1347400 AT2G48130.6 33.645 107 68 2 50 156 30 133 2.22e-15 71.6
Msa1347400 AT2G48130.4 33.645 107 68 2 50 156 30 133 2.22e-15 71.6
Msa1347400 AT2G48130.5 33.645 107 68 2 50 156 30 133 2.22e-15 71.6
Msa1347400 AT2G48130.1 33.645 107 68 2 50 156 30 133 2.22e-15 71.6
Msa1347400 AT2G48130.3 33.645 107 68 2 50 156 30 133 2.22e-15 71.6
Msa1347400 AT4G08670.1 34.356 163 94 6 42 197 40 196 6.66e-15 70.9
Msa1347400 AT2G13820.1 35.772 123 75 2 50 170 27 147 1.10e-14 69.3
Msa1347400 AT2G13820.3 35.772 123 75 2 50 170 39 159 1.30e-14 69.3
Msa1347400 AT5G64080.1 30.909 165 93 5 42 206 36 179 8.12e-14 67.4
Msa1347400 AT5G64080.2 33.077 130 77 4 42 165 36 161 8.90e-14 67.0
Msa1347400 AT4G14815.1 35.484 93 57 2 40 132 16 105 3.01e-13 65.1
Msa1347400 AT5G09370.3 34.188 117 69 3 50 163 28 139 3.66e-13 65.1
Msa1347400 AT2G13820.2 37.662 77 46 1 54 130 31 105 8.11e-13 63.2
Msa1347400 AT5G09370.1 35.714 98 58 2 50 147 28 120 2.65e-12 62.8
Msa1347400 AT5G09370.2 37.931 87 49 2 60 146 38 119 1.49e-11 60.1

Find 71 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATTACACACTTTAATT+AGG 0.225161 tig0009737:+15345 Msa1347400:three_prime_UTR
CTTCTGGTGGCAGAATTTAA+TGG 0.240915 tig0009737:-12645 Msa1347400:intergenic
AGCCCTTCTGGAAGCAAAAT+TGG 0.248172 tig0009737:+15150 Msa1347400:CDS
GCAGGTGTTCTTAGCCCTTC+TGG 0.257309 tig0009737:+15138 Msa1347400:intron
AACAGCTTACACAAACAAAT+AGG 0.265322 tig0009737:-13107 Msa1347400:intergenic
GGCGCTAAAACCGCGGTTTC+CGG 0.269928 tig0009737:-12948 Msa1347400:intergenic
TATTGAGTGCTTTGCTTTAG+TGG 0.271967 tig0009737:+15318 Msa1347400:three_prime_UTR
TTTGCATCACTCTCATTTCA+TGG 0.285544 tig0009737:+12885 Msa1347400:CDS
ATAAATAGAGGGACTTGATT+TGG 0.291910 tig0009737:-12684 Msa1347400:intergenic
ACTACCGAGTTCTTCGTTCT+TGG 0.317095 tig0009737:+15382 Msa1347400:three_prime_UTR
AAAGCACTCAATACACAAAT+AGG 0.323137 tig0009737:-15308 Msa1347400:intergenic
GGACTTAGGGCTGATCCTTT+TGG 0.329469 tig0009737:-14797 Msa1347400:intergenic
TATATATAATATAGTCTATT+CGG 0.351497 tig0009737:-15528 Msa1347400:intergenic
TGGAGTATCTGCTGCTGCTT+TGG 0.352720 tig0009737:+12911 Msa1347400:CDS
CCTCCTGTTAGTGCTTGTTC+AGG 0.362697 tig0009737:+13215 Msa1347400:CDS
CTTAAGCTTCCAACTATTTG+TGG 0.365023 tig0009737:+13182 Msa1347400:CDS
ATTTGTTTGTGTAAGCTGTT+AGG 0.384262 tig0009737:+13110 Msa1347400:CDS
CGGTGCAAAATGAGTTAGTT+AGG 0.388672 tig0009737:+12606 Msa1347400:five_prime_UTR
TGAATATGTGTTATTATGAT+TGG 0.393179 tig0009737:-12728 Msa1347400:intergenic
TCAACTTCATCTGATAGTTC+AGG 0.394833 tig0009737:+14821 Msa1347400:CDS
GTCAGATTGTTTGACATTTG+TGG 0.406541 tig0009737:+13013 Msa1347400:CDS
GAGTTAGCAGGGTTGATTGA+TGG 0.411939 tig0009737:+13080 Msa1347400:CDS
AATGTAAAATCAGAAGAATA+TGG 0.417381 tig0009737:-15238 Msa1347400:intergenic
AGTGCTTTGCTTTAGTGGAT+TGG 0.419671 tig0009737:+15323 Msa1347400:three_prime_UTR
TCAGGACAACATCCTTTGTC+TGG 0.420386 tig0009737:-13059 Msa1347400:intergenic
TGATTGGTATGTTATATAGT+TGG 0.424649 tig0009737:-12712 Msa1347400:intergenic
TTACCTGAACAAGCACTAAC+AGG 0.424650 tig0009737:-13218 Msa1347400:intergenic
AGATGAAGTTGAAGGACTTA+GGG 0.439279 tig0009737:-14810 Msa1347400:intergenic
TGTTTGACATTTGTGGAAGA+TGG 0.446855 tig0009737:+13020 Msa1347400:CDS
CTATATAGCAAGAATGTAGT+TGG 0.452894 tig0009737:-15435 Msa1347400:intergenic
GGTAATGCTGCTGATTCTAT+TGG 0.462047 tig0009737:+13134 Msa1347400:CDS
ACAGCTTACACAAACAAATA+GGG 0.462564 tig0009737:-13106 Msa1347400:intergenic
CAGATGAAGTTGAAGGACTT+AGG 0.463432 tig0009737:-14811 Msa1347400:intergenic
AAAACCGCGGTTTCCGGTGC+CGG 0.471159 tig0009737:-12942 Msa1347400:intergenic
GCGCCATCACCGGCAGATGA+TGG 0.475243 tig0009737:+12966 Msa1347400:CDS
GGCAGATGATGGATGCTTGA+TGG 0.475901 tig0009737:+12977 Msa1347400:CDS
GGATGTTGTCCTGAGTTAGC+AGG 0.476788 tig0009737:+13068 Msa1347400:CDS
TGCTGCTTTGGCTCAATCAC+CGG 0.486295 tig0009737:+12923 Msa1347400:CDS
GTTTGACATTTGTGGAAGAT+GGG 0.488176 tig0009737:+13021 Msa1347400:CDS
TCACTCTCATTTCATGGAGA+TGG 0.490910 tig0009737:+12891 Msa1347400:CDS
GTAGTAACACCACAAATAGT+TGG 0.491016 tig0009737:-13191 Msa1347400:intergenic
GAACTATCAGATGAAGTTGA+AGG 0.493768 tig0009737:-14818 Msa1347400:intergenic
CATCCATCATCTGCCGGTGA+TGG 0.511093 tig0009737:-12969 Msa1347400:intergenic
TAGTTGGAGTAAATAAATAG+AGG 0.514530 tig0009737:-12696 Msa1347400:intergenic
TTTGGCTCAATCACCGGCAC+CGG 0.516118 tig0009737:+12929 Msa1347400:CDS
ACTCGGTAGTGTTGTGATGT+AGG 0.516958 tig0009737:-15369 Msa1347400:intergenic
TATATAGCAAGAATGTAGTT+GGG 0.527922 tig0009737:-15434 Msa1347400:intergenic
GATATGGCAATGTCACCAAA+AGG 0.530694 tig0009737:+14782 Msa1347400:intron
AATGAGTTTCTAACTTCTGG+TGG 0.552507 tig0009737:-12658 Msa1347400:intergenic
CCTTCTGGAAGCAAAATTGG+AGG 0.554339 tig0009737:+15153 Msa1347400:CDS
TGCAGAGGCTTGAATGCTTG+AGG 0.572865 tig0009737:-15178 Msa1347400:intergenic
TCAATCAACCCTGCTAACTC+AGG 0.575923 tig0009737:-13077 Msa1347400:intergenic
TCCACTCAGTGATGGAGGCA+AGG 0.577085 tig0009737:-14611 Msa1347400:intergenic
CGGTGATGGCGCTAAAACCG+CGG 0.578610 tig0009737:-12955 Msa1347400:intergenic
TGGAGACAGAGACAGTGGAC+AGG 0.579721 tig0009737:-15218 Msa1347400:intergenic
ATAGCATCTCCACTCAGTGA+TGG 0.584097 tig0009737:-14619 Msa1347400:intergenic
ATCAAGCATCCATCATCTGC+CGG 0.595406 tig0009737:-12975 Msa1347400:intergenic
GATGTTGTCCTGAGTTAGCA+GGG 0.597137 tig0009737:+13069 Msa1347400:CDS
TGCAAAGAGTAAAGAAACAA+TGG 0.599464 tig0009737:-12868 Msa1347400:intergenic
AGTTGGAGTAAATAAATAGA+GGG 0.601980 tig0009737:-12695 Msa1347400:intergenic
GAATATGGAGACAGAGACAG+TGG 0.605345 tig0009737:-15223 Msa1347400:intergenic
GCATCTCCACTCAGTGATGG+AGG 0.609350 tig0009737:-14616 Msa1347400:intergenic
ATATGAAACTAATGACACAT+AGG 0.618243 tig0009737:-15270 Msa1347400:intergenic
GGAGACAGAGACAGTGGACA+GGG 0.621999 tig0009737:-15217 Msa1347400:intergenic
AGTGATGGAGGCAAGGACAC+AGG 0.629179 tig0009737:-14604 Msa1347400:intergenic
ATCACCAAGAACGAAGAACT+CGG 0.632446 tig0009737:-15386 Msa1347400:intergenic
TGTTTGTGTAAGCTGTTAGG+TGG 0.635667 tig0009737:+13113 Msa1347400:CDS
TCCTTGCCTCCATCACTGAG+TGG 0.643834 tig0009737:+14610 Msa1347400:CDS
ATCACCGGCACCGGAAACCG+CGG 0.645420 tig0009737:+12938 Msa1347400:CDS
AAGTTGACAAAACCAGACAA+AGG 0.698102 tig0009737:+13047 Msa1347400:CDS
CCTGAACAAGCACTAACAGG+AGG 0.707608 tig0009737:-13215 Msa1347390:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTCAAATTTTAAAATATT+TGG + tig0009737:13278-13297 Msa1347400:intron 10.0%
!! AACATTATATTATATCTATA+TGG + tig0009737:13334-13353 Msa1347400:intron 10.0%
!! TTAAAATAATGTTAAAACAA+AGG - tig0009737:13939-13958 Msa1347400:intergenic 10.0%
!! TCAAAAAGAAAATAAAAAAA+GGG - tig0009737:14359-14378 Msa1347400:intergenic 10.0%
!! TTCAAAAAGAAAATAAAAAA+AGG - tig0009737:14360-14379 Msa1347400:intergenic 10.0%
!! TATATATAATATAGTCTATT+CGG - tig0009737:15531-15550 Msa1347400:intergenic 10.0%
!!! TTGATCTTAAAATGTTTTTT+TGG + tig0009737:13649-13668 Msa1347400:intron 15.0%
!!! ATTTTTAAGTTTTGTTTGAT+AGG - tig0009737:13778-13797 Msa1347400:intergenic 15.0%
!! TTATATATTACCAATGATTA+TGG + tig0009737:13827-13846 Msa1347400:intron 15.0%
!! GTTAAAATATACACTATAAT+TGG + tig0009737:13990-14009 Msa1347400:intron 15.0%
!! ACAATTATTAAATTCAAAGA+AGG - tig0009737:14115-14134 Msa1347400:intergenic 15.0%
!!! GTGTTACAATTATTTATTTT+GGG - tig0009737:14305-14324 Msa1347400:intergenic 15.0%
!!! TGTGTTACAATTATTTATTT+TGG - tig0009737:14306-14325 Msa1347400:intergenic 15.0%
!! AAAAGAAAATAAAAAAAGAG+TGG - tig0009737:14411-14430 Msa1347400:intergenic 15.0%
!! AACAACAATAAATTAACTTA+TGG - tig0009737:14662-14681 Msa1347400:intergenic 15.0%
!! TTGATAAAATAATGAAGATA+TGG + tig0009737:14766-14785 Msa1347400:intron 15.0%
!! TAATGATCATAAATATCAAT+CGG + tig0009737:14934-14953 Msa1347400:intron 15.0%
!! TGGATCCAAAAATAAATAAA+CGG + tig0009737:12586-12605 Msa1347400:five_prime_UTR 20.0%
!!! TGAATATGTGTTATTATGAT+TGG - tig0009737:12731-12750 Msa1347400:intergenic 20.0%
!! GATTATTTGTCTTTCATATT+TGG + tig0009737:13421-13440 Msa1347400:intron 20.0%
!! GCATTATAATAACTAAATTG+TGG + tig0009737:13557-13576 Msa1347400:intron 20.0%
!! AAGATCCTATAAAAAACTTT+AGG - tig0009737:13589-13608 Msa1347400:intergenic 20.0%
!! ATTATTAAATTCAAAGAAGG+CGG - tig0009737:14112-14131 Msa1347400:intergenic 20.0%
!! GTTTAAATAACTAAATATGG+TGG - tig0009737:14197-14216 Msa1347400:intergenic 20.0%
!! GTGGTTTAAATAACTAAATA+TGG - tig0009737:14200-14219 Msa1347400:intergenic 20.0%
!! TTATATTGCAATTACTAGTA+AGG + tig0009737:14225-14244 Msa1347400:intron 20.0%
!!! TTTATTTGTTGAATGGTAAA+GGG - tig0009737:14263-14282 Msa1347400:intergenic 20.0%
!!! ATTTATTTGTTGAATGGTAA+AGG - tig0009737:14264-14283 Msa1347400:intergenic 20.0%
!! TATGTAAATTTACATGAACT+TGG + tig0009737:14497-14516 Msa1347400:intron 20.0%
!! TAACTTAAGTAAAACTCATT+TGG + tig0009737:14892-14911 Msa1347400:intron 20.0%
!! TTGATGGAAAATTCTATATT+TGG - tig0009737:15074-15093 Msa1347400:intergenic 20.0%
!! AATGTAAAATCAGAAGAATA+TGG - tig0009737:15241-15260 Msa1347400:intergenic 20.0%
!! GATTATTACACACTTTAATT+AGG + tig0009737:15345-15364 Msa1347400:three_prime_UTR 20.0%
!!! TTGCACCGTTTATTTATTTT+TGG - tig0009737:12594-12613 Msa1347400:intergenic 25.0%
! AAAAATGAGTTTCTAACTTC+TGG - tig0009737:12664-12683 Msa1347400:intergenic 25.0%
! AGTTGGAGTAAATAAATAGA+GGG - tig0009737:12698-12717 Msa1347400:intergenic 25.0%
! TAGTTGGAGTAAATAAATAG+AGG - tig0009737:12699-12718 Msa1347400:intergenic 25.0%
! TGATTGGTATGTTATATAGT+TGG - tig0009737:12715-12734 Msa1347400:intergenic 25.0%
!!! TTAGTTTTTGTGATAGGTTT+TGG - tig0009737:12822-12841 Msa1347400:intergenic 25.0%
! ACCTATCACAAAAACTAAAA+TGG + tig0009737:12824-12843 Msa1347400:exon 25.0%
! TTTATGATTATGTGAGACTT+TGG + tig0009737:13535-13554 Msa1347400:intron 25.0%
!!! CACATCCTAAAGTTTTTTAT+AGG + tig0009737:13581-13600 Msa1347400:intron 25.0%
! CAATAATAGACCATAATCAT+TGG - tig0009737:13840-13859 Msa1347400:intergenic 25.0%
!! TTGGCAATTTATTTGTTGAA+TGG - tig0009737:14270-14289 Msa1347400:intergenic 25.0%
! CAACAAATAAATTGCCAATA+AGG + tig0009737:14272-14291 Msa1347400:intron 25.0%
! ACAAATTAAGGTGAACAATT+TGG - tig0009737:14334-14353 Msa1347400:intergenic 25.0%
! AAAAAAAGGGTGACAAATTA+AGG - tig0009737:14346-14365 Msa1347400:intergenic 25.0%
! TAACTTATGGAAAACTTACT+TGG - tig0009737:14649-14668 Msa1347400:intergenic 25.0%
! CATGCACATAAAAGTTAATA+AGG - tig0009737:15022-15041 Msa1347400:intergenic 25.0%
!! CTTATTAACTTTTATGTGCA+TGG + tig0009737:15020-15039 Msa1347400:intron 25.0%
! ACTTTAGTACTATATGTTGA+TGG - tig0009737:15090-15109 Msa1347400:intergenic 25.0%
!!! TGTATTTTTCAAAATTGTGC+AGG + tig0009737:15120-15139 Msa1347400:intron 25.0%
! ATATGAAACTAATGACACAT+AGG - tig0009737:15273-15292 Msa1347400:intergenic 25.0%
! TATATAGCAAGAATGTAGTT+GGG - tig0009737:15437-15456 Msa1347400:intergenic 25.0%
!! AATTTTGAGAGGATAGAAGT+TGG + tig0009737:12566-12585 Msa1347400:five_prime_UTR 30.0%
ATAAATAGAGGGACTTGATT+TGG - tig0009737:12687-12706 Msa1347400:intergenic 30.0%
!!! GCCATTTTAGTTTTTGTGAT+AGG - tig0009737:12828-12847 Msa1347400:intergenic 30.0%
TGCAAAGAGTAAAGAAACAA+TGG - tig0009737:12871-12890 Msa1347400:intergenic 30.0%
ACAGCTTACACAAACAAATA+GGG - tig0009737:13109-13128 Msa1347400:intergenic 30.0%
AACAGCTTACACAAACAAAT+AGG - tig0009737:13110-13129 Msa1347400:intergenic 30.0%
ATTTGTTTGTGTAAGCTGTT+AGG + tig0009737:13110-13129 Msa1347400:CDS 30.0%
TATTTAGTTAGCCATCTTGT+CGG + tig0009737:13621-13640 Msa1347400:intron 30.0%
AAACAAAGGTAACACTATGT+TGG - tig0009737:13925-13944 Msa1347400:intergenic 30.0%
! AATAACTAAATATGGTGGAG+AGG - tig0009737:14192-14211 Msa1347400:intergenic 30.0%
TAATTGCAATATAACTGCTG+TGG - tig0009737:14219-14238 Msa1347400:intergenic 30.0%
ATTGCAATTACTAGTAAGGT+AGG + tig0009737:14229-14248 Msa1347400:intron 30.0%
TTGCAATTACTAGTAAGGTA+GGG + tig0009737:14230-14249 Msa1347400:intron 30.0%
ATAAATTGCCAATAAGGTGT+AGG + tig0009737:14278-14297 Msa1347400:intron 30.0%
GACAAATTAAGGTGAACAAT+TGG - tig0009737:14335-14354 Msa1347400:intergenic 30.0%
TATATATGTGTCACAGCTAT+TGG + tig0009737:14577-14596 Msa1347400:intron 30.0%
! AAAGCACTCAATACACAAAT+AGG - tig0009737:15311-15330 Msa1347400:intergenic 30.0%
CTATATAGCAAGAATGTAGT+TGG - tig0009737:15438-15457 Msa1347400:intergenic 30.0%
AATGAGTTTCTAACTTCTGG+TGG - tig0009737:12661-12680 Msa1347400:intergenic 35.0%
!!! TTGTGATAGGTTTTGGACTT+TGG - tig0009737:12815-12834 Msa1347400:intergenic 35.0%
TTTGCATCACTCTCATTTCA+TGG + tig0009737:12885-12904 Msa1347400:CDS 35.0%
GTCAGATTGTTTGACATTTG+TGG + tig0009737:13013-13032 Msa1347400:CDS 35.0%
TGTTTGACATTTGTGGAAGA+TGG + tig0009737:13020-13039 Msa1347400:CDS 35.0%
GTTTGACATTTGTGGAAGAT+GGG + tig0009737:13021-13040 Msa1347400:CDS 35.0%
AAGTTGACAAAACCAGACAA+AGG + tig0009737:13047-13066 Msa1347400:CDS 35.0%
CTTAAGCTTCCAACTATTTG+TGG + tig0009737:13182-13201 Msa1347400:CDS 35.0%
GTAGTAACACCACAAATAGT+TGG - tig0009737:13194-13213 Msa1347400:intergenic 35.0%
CTTCTTAGGTTTAGGTATGT+TGG - tig0009737:13889-13908 Msa1347400:intergenic 35.0%
TTGTCTCTCTTCTTAGGTTT+AGG - tig0009737:13897-13916 Msa1347400:intergenic 35.0%
GTAACTTTGTCTCTCTTCTT+AGG - tig0009737:13903-13922 Msa1347400:intergenic 35.0%
AATTCCATTACACATGGTGA+TGG - tig0009737:14056-14075 Msa1347400:intergenic 35.0%
! ATCACCATGTGTAATGGAAT+TGG + tig0009737:14055-14074 Msa1347400:intron 35.0%
CTATCCAATTCCATTACACA+TGG - tig0009737:14062-14081 Msa1347400:intergenic 35.0%
TTAAGGTGAACAATTTGGAG+TGG - tig0009737:14329-14348 Msa1347400:intergenic 35.0%
AAGAGTGGCATGACAAATTA+AGG - tig0009737:14396-14415 Msa1347400:intergenic 35.0%
GAAATTACCTTGATCATCTG+TGG + tig0009737:14725-14744 Msa1347400:intron 35.0%
TAAGTTACCACAGATGATCA+AGG - tig0009737:14735-14754 Msa1347400:intergenic 35.0%
AGATGAAGTTGAAGGACTTA+GGG - tig0009737:14813-14832 Msa1347400:intergenic 35.0%
GAACTATCAGATGAAGTTGA+AGG - tig0009737:14821-14840 Msa1347400:intergenic 35.0%
TCAACTTCATCTGATAGTTC+AGG + tig0009737:14821-14840 Msa1347400:CDS 35.0%
AAAAATGAAAGTCAGTGCAG+AGG - tig0009737:15196-15215 Msa1347400:intergenic 35.0%
TATTGAGTGCTTTGCTTTAG+TGG + tig0009737:15318-15337 Msa1347400:three_prime_UTR 35.0%
CGGTGCAAAATGAGTTAGTT+AGG + tig0009737:12606-12625 Msa1347400:five_prime_UTR 40.0%
CTTCTGGTGGCAGAATTTAA+TGG - tig0009737:12648-12667 Msa1347400:intergenic 40.0%
TCACTCTCATTTCATGGAGA+TGG + tig0009737:12891-12910 Msa1347400:CDS 40.0%
TGTTTGTGTAAGCTGTTAGG+TGG + tig0009737:13113-13132 Msa1347400:CDS 40.0%
!! GGTAATGCTGCTGATTCTAT+TGG + tig0009737:13134-13153 Msa1347400:CDS 40.0%
TTACCTGAACAAGCACTAAC+AGG - tig0009737:13221-13240 Msa1347400:intergenic 40.0%
CTCATCATTGTCTCTCATCT+AGG - tig0009737:13491-13510 Msa1347400:intergenic 40.0%
AGAGACAATGATGAGTGAAG+AGG + tig0009737:13496-13515 Msa1347400:intron 40.0%
GAGACAATGATGAGTGAAGA+GGG + tig0009737:13497-13516 Msa1347400:intron 40.0%
GATCAAAATAGCCGACAAGA+TGG - tig0009737:13635-13654 Msa1347400:intergenic 40.0%
!! TTTTGGGTCCTACACCTTAT+TGG - tig0009737:14289-14308 Msa1347400:intergenic 40.0%
GATATGGCAATGTCACCAAA+AGG + tig0009737:14782-14801 Msa1347400:intron 40.0%
CAGATGAAGTTGAAGGACTT+AGG - tig0009737:14814-14833 Msa1347400:intergenic 40.0%
! CTCCAATTTTGCTTCCAGAA+GGG - tig0009737:15155-15174 Msa1347400:intergenic 40.0%
! AGTGCTTTGCTTTAGTGGAT+TGG + tig0009737:15323-15342 Msa1347400:three_prime_UTR 40.0%
ATCACCAAGAACGAAGAACT+CGG - tig0009737:15389-15408 Msa1347400:intergenic 40.0%
ATCAAGCATCCATCATCTGC+CGG - tig0009737:12978-12997 Msa1347400:intergenic 45.0%
TCAGGACAACATCCTTTGTC+TGG - tig0009737:13062-13081 Msa1347400:intergenic 45.0%
GATGTTGTCCTGAGTTAGCA+GGG + tig0009737:13069-13088 Msa1347400:CDS 45.0%
TCAATCAACCCTGCTAACTC+AGG - tig0009737:13080-13099 Msa1347400:intergenic 45.0%
! GAGTTAGCAGGGTTGATTGA+TGG + tig0009737:13080-13099 Msa1347400:CDS 45.0%
!! ACATGGTGATGGACTGACAT+TGG - tig0009737:14045-14064 Msa1347400:intergenic 45.0%
CAGTCCATCACCATGTGTAA+TGG + tig0009737:14049-14068 Msa1347400:intron 45.0%
GAAGGCGGTATCAACAAAGA+AGG - tig0009737:14097-14116 Msa1347400:intergenic 45.0%
ATAGCATCTCCACTCAGTGA+TGG - tig0009737:14622-14641 Msa1347400:intergenic 45.0%
! AGCCCTTCTGGAAGCAAAAT+TGG + tig0009737:15150-15169 Msa1347400:CDS 45.0%
! CCTCCAATTTTGCTTCCAGA+AGG - tig0009737:15156-15175 Msa1347400:intergenic 45.0%
! CCTTCTGGAAGCAAAATTGG+AGG + tig0009737:15153-15172 Msa1347400:CDS 45.0%
GAATATGGAGACAGAGACAG+TGG - tig0009737:15226-15245 Msa1347400:intergenic 45.0%
ACTCGGTAGTGTTGTGATGT+AGG - tig0009737:15372-15391 Msa1347400:intergenic 45.0%
ACTACCGAGTTCTTCGTTCT+TGG + tig0009737:15382-15401 Msa1347400:three_prime_UTR 45.0%
!! AAAACTTAAAAATAATAATT+TGG + tig0009737:13785-13804 Msa1347400:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+AGG + tig0009737:14975-14994 Msa1347400:intron 5.0%
! TGGAGTATCTGCTGCTGCTT+TGG + tig0009737:12911-12930 Msa1347400:CDS 50.0%
!! TGCTGCTTTGGCTCAATCAC+CGG + tig0009737:12923-12942 Msa1347400:CDS 50.0%
!! GGCAGATGATGGATGCTTGA+TGG + tig0009737:12977-12996 Msa1347400:CDS 50.0%
GGATGTTGTCCTGAGTTAGC+AGG + tig0009737:13068-13087 Msa1347400:CDS 50.0%
CCTGAACAAGCACTAACAGG+AGG - tig0009737:13218-13237 Msa1347400:intergenic 50.0%
CCTCCTGTTAGTGCTTGTTC+AGG + tig0009737:13215-13234 Msa1347400:CDS 50.0%
! GGACTTAGGGCTGATCCTTT+TGG - tig0009737:14800-14819 Msa1347400:intergenic 50.0%
TGCAGAGGCTTGAATGCTTG+AGG - tig0009737:15181-15200 Msa1347400:intergenic 50.0%
! TTTGGCTCAATCACCGGCAC+CGG + tig0009737:12929-12948 Msa1347400:CDS 55.0%
CATCCATCATCTGCCGGTGA+TGG - tig0009737:12972-12991 Msa1347400:intergenic 55.0%
! AGTGATGGAGGCAAGGACAC+AGG - tig0009737:14607-14626 Msa1347400:intergenic 55.0%
TCCTTGCCTCCATCACTGAG+TGG + tig0009737:14610-14629 Msa1347400:CDS 55.0%
! TCCACTCAGTGATGGAGGCA+AGG - tig0009737:14614-14633 Msa1347400:intergenic 55.0%
GCATCTCCACTCAGTGATGG+AGG - tig0009737:14619-14638 Msa1347400:intergenic 55.0%
GCAGGTGTTCTTAGCCCTTC+TGG + tig0009737:15138-15157 Msa1347400:intron 55.0%
GGAGACAGAGACAGTGGACA+GGG - tig0009737:15220-15239 Msa1347400:intergenic 55.0%
TGGAGACAGAGACAGTGGAC+AGG - tig0009737:15221-15240 Msa1347400:intergenic 55.0%
AAAACCGCGGTTTCCGGTGC+CGG - tig0009737:12945-12964 Msa1347400:intergenic 60.0%
GGCGCTAAAACCGCGGTTTC+CGG - tig0009737:12951-12970 Msa1347400:intergenic 60.0%
! CGGTGATGGCGCTAAAACCG+CGG - tig0009737:12958-12977 Msa1347400:intergenic 60.0%
!! CGCGGTTTTAGCGCCATCAC+CGG + tig0009737:12956-12975 Msa1347400:CDS 60.0%
! ATCACCGGCACCGGAAACCG+CGG + tig0009737:12938-12957 Msa1347400:CDS 65.0%
GCGCCATCACCGGCAGATGA+TGG + tig0009737:12966-12985 Msa1347400:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0009737 gene 12564 15567 12564 ID=Msa1347400;Name=Msa1347400
tig0009737 mRNA 12564 15567 12564 ID=Msa1347400-mRNA-1;Parent=Msa1347400;Name=Msa1347400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=279|1|1|1|1|1|4|316|206
tig0009737 exon 12564 13236 12564 ID=Msa1347400-mRNA-1:exon:5868;Parent=Msa1347400-mRNA-1
tig0009737 exon 14593 14649 14593 ID=Msa1347400-mRNA-1:exon:5869;Parent=Msa1347400-mRNA-1
tig0009737 exon 14783 14842 14783 ID=Msa1347400-mRNA-1:exon:5870;Parent=Msa1347400-mRNA-1
tig0009737 exon 15142 15567 15142 ID=Msa1347400-mRNA-1:exon:5871;Parent=Msa1347400-mRNA-1
tig0009737 five_prime_UTR 12564 12842 12564 ID=Msa1347400-mRNA-1:five_prime_utr;Parent=Msa1347400-mRNA-1
tig0009737 CDS 12843 13236 12843 ID=Msa1347400-mRNA-1:cds;Parent=Msa1347400-mRNA-1
tig0009737 CDS 14593 14649 14593 ID=Msa1347400-mRNA-1:cds;Parent=Msa1347400-mRNA-1
tig0009737 CDS 14783 14842 14783 ID=Msa1347400-mRNA-1:cds;Parent=Msa1347400-mRNA-1
tig0009737 CDS 15142 15251 15142 ID=Msa1347400-mRNA-1:cds;Parent=Msa1347400-mRNA-1
tig0009737 three_prime_UTR 15252 15567 15252 ID=Msa1347400-mRNA-1:three_prime_utr;Parent=Msa1347400-mRNA-1
Gene Sequence

>Msa1347400

ATGGCTTCTACAACATTAGTAGTAGCCATTGTTTCTTTACTCTTTGCATCACTCTCATTTCATGGAGATGGAGTATCTGCTGCTGCTTTGGCTCAATCACCGGCACCGGAAACCGCGGTTTTAGCGCCATCACCGGCAGATGATGGATGCTTGATGGCTTTAACAAATATGTCAGATTGTTTGACATTTGTGGAAGATGGGAGTAAGTTGACAAAACCAGACAAAGGATGTTGTCCTGAGTTAGCAGGGTTGATTGATGGCAACCCTATTTGTTTGTGTAAGCTGTTAGGTGGTAATGCTGCTGATTCTATTGGTATCAAGATTAATATCAATAAAGCTCTTAAGCTTCCAACTATTTGTGGTGTTACTACTCCTCCTGTTAGTGCTTGTTCAGCTATTGGAGTTCCTGTGTCCTTGCCTCCATCACTGAGTGGAGATGCTATGTCACCAAATATGGCAATGTCACCAAAAGGATCAGCCCTAAGTCCTTCAACTTCATCTGATAGTTCAGGTGTTCTTAGCCCTTCTGGAAGCAAAATTGGAGGAGCCTCAAGCATTCAAGCCTCTGCACTGACTTTCATTTTTGCCCTGTCCACTGTCTCTGTCTCCATATTCTTCTGA

Protein sequence

>Msa1347400

MASTTLVVAIVSLLFASLSFHGDGVSAAALAQSPAPETAVLAPSPADDGCLMALTNMSDCLTFVEDGSKLTKPDKGCCPELAGLIDGNPICLCKLLGGNAADSIGIKININKALKLPTICGVTTPPVSACSAIGVPVSLPPSLSGDAMSPNMAMSPKGSALSPSTSSDSSGVLSPSGSKIGGASSIQASALTFIFALSTVSVSIFF*