Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1347400 | XP_003601303.1 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 5.37e-125 | 361 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1347400 | sp|Q9LZH5|LTPG2_ARATH | 46.324 | 136 | 63 | 3 | 43 | 169 | 32 | 166 | 7.94e-27 | 104 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1347400 | B7FFE5 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 2.56e-125 | 361 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0047630 | Msa1347400 | 0.812065 | 5.113319e-51 | -8.615850e-47 |
Msa0078110 | Msa1347400 | 0.812442 | 4.231688e-51 | -8.615850e-47 |
Msa0094060 | Msa1347400 | 0.801914 | 7.192253e-49 | -8.615850e-47 |
Msa0099300 | Msa1347400 | 0.816342 | 5.809782e-52 | -8.615850e-47 |
Msa0104860 | Msa1347400 | -0.845955 | 2.940968e-59 | -8.615850e-47 |
Msa1347400 | Msa1367810 | 0.801790 | 7.625257e-49 | -8.615850e-47 |
Msa1347400 | Msa1369860 | 0.840437 | 8.699921e-58 | -8.615850e-47 |
Msa1347400 | Msa1386820 | 0.826134 | 3.203806e-54 | -8.615850e-47 |
Msa1347400 | Msa1430940 | 0.800750 | 1.244757e-48 | -8.615850e-47 |
Msa1347400 | Msa1444750 | 0.808541 | 2.943936e-50 | -8.615850e-47 |
Msa1347400 | Msa1455560 | 0.804876 | 1.750004e-49 | -8.615850e-47 |
Msa0607070 | Msa1347400 | 0.811518 | 6.726191e-51 | -8.615850e-47 |
Msa0623760 | Msa1347400 | 0.806031 | 1.002030e-49 | -8.615850e-47 |
Msa0643590 | Msa1347400 | 0.827708 | 1.347691e-54 | -8.615850e-47 |
Msa0648840 | Msa1347400 | 0.828615 | 8.145219e-55 | -8.615850e-47 |
Msa0679270 | Msa1347400 | 0.809786 | 1.592884e-50 | -8.615850e-47 |
Msa0679880 | Msa1347400 | 0.802972 | 4.353640e-49 | -8.615850e-47 |
Msa0687740 | Msa1347400 | 0.807338 | 5.306613e-50 | -8.615850e-47 |
Msa0733110 | Msa1347400 | 0.803737 | 3.021864e-49 | -8.615850e-47 |
Msa0746640 | Msa1347400 | 0.985730 | 1.747944e-164 | -8.615850e-47 |
Msa0774090 | Msa1347400 | 0.821148 | 4.709929e-53 | -8.615850e-47 |
Msa0788490 | Msa1347400 | 0.823201 | 1.573558e-53 | -8.615850e-47 |
Msa0811710 | Msa1347400 | 0.833245 | 5.958570e-56 | -8.615850e-47 |
Msa0815340 | Msa1347400 | 0.807381 | 5.197830e-50 | -8.615850e-47 |
Msa0816390 | Msa1347400 | 0.816875 | 4.413502e-52 | -8.615850e-47 |
Msa0184070 | Msa1347400 | 0.846510 | 2.075388e-59 | -8.615850e-47 |
Msa0224700 | Msa1347400 | 0.817747 | 2.808884e-52 | -8.615850e-47 |
Msa1237760 | Msa1347400 | 0.804294 | 2.314399e-49 | -8.615850e-47 |
Msa1275290 | Msa1347400 | 0.823759 | 1.164824e-53 | -8.615850e-47 |
Msa1277600 | Msa1347400 | 0.819857 | 9.316217e-53 | -8.615850e-47 |
Msa1278780 | Msa1347400 | 0.813337 | 2.693576e-51 | -8.615850e-47 |
Msa1300850 | Msa1347400 | 0.848708 | 5.160911e-60 | -8.615850e-47 |
Msa1318190 | Msa1347400 | 0.815850 | 7.484466e-52 | -8.615850e-47 |
Msa1320070 | Msa1347400 | 0.808127 | 3.608232e-50 | -8.615850e-47 |
Msa1334690 | Msa1347400 | 0.822793 | 1.958529e-53 | -8.615850e-47 |
Msa0369770 | Msa1347400 | 0.807377 | 5.206427e-50 | -8.615850e-47 |
Msa0385400 | Msa1347400 | 0.825193 | 5.355699e-54 | -8.615850e-47 |
Msa0402780 | Msa1347400 | 0.944304 | 2.491592e-103 | -8.615850e-47 |
Msa0404840 | Msa1347400 | 0.838916 | 2.164415e-57 | -8.615850e-47 |
Msa0417140 | Msa1347400 | 0.808357 | 3.222370e-50 | -8.615850e-47 |
Msa0421790 | Msa1347400 | 0.828681 | 7.853002e-55 | -8.615850e-47 |
Msa0439780 | Msa1347400 | 0.804005 | 2.658930e-49 | -8.615850e-47 |
Msa0450830 | Msa1347400 | 0.823502 | 1.338449e-53 | -8.615850e-47 |
Msa0450860 | Msa1347400 | 0.806693 | 7.268442e-50 | -8.615850e-47 |
Msa0463980 | Msa1347400 | 0.813702 | 2.238754e-51 | -8.615850e-47 |
Msa0467890 | Msa1347400 | 0.861276 | 1.149622e-63 | -8.615850e-47 |
Msa0467970 | Msa1347400 | 0.865312 | 6.467945e-65 | -8.615850e-47 |
Msa0982220 | Msa1347400 | 0.800960 | 1.127551e-48 | -8.615850e-47 |
Msa0982720 | Msa1347400 | 0.997470 | 4.206957e-243 | -8.615850e-47 |
Msa0988030 | Msa1347400 | 0.820540 | 6.497661e-53 | -8.615850e-47 |
Msa1008760 | Msa1347400 | 0.810532 | 1.099812e-50 | -8.615850e-47 |
Msa1098640 | Msa1347400 | 0.830660 | 2.591539e-55 | -8.615850e-47 |
Msa0247340 | Msa1347400 | 0.818644 | 1.760076e-52 | -8.615850e-47 |
Msa0265780 | Msa1347400 | 0.801273 | 9.731463e-49 | -8.615850e-47 |
Msa0290040 | Msa1347400 | 0.805796 | 1.123079e-49 | -8.615850e-47 |
Msa0296100 | Msa1347400 | 0.830941 | 2.211454e-55 | -8.615850e-47 |
Msa0299020 | Msa1347400 | 0.801253 | 9.826200e-49 | -8.615850e-47 |
Msa0303780 | Msa1347400 | 0.825427 | 4.715404e-54 | -8.615850e-47 |
Msa0307750 | Msa1347400 | 0.800993 | 1.110312e-48 | -8.615850e-47 |
Msa0334480 | Msa1347400 | 0.823304 | 1.488562e-53 | -8.615850e-47 |
Msa1129920 | Msa1347400 | 0.850569 | 1.559976e-60 | -8.615850e-47 |
Msa1138840 | Msa1347400 | 0.822377 | 2.447468e-53 | -8.615850e-47 |
Msa1177300 | Msa1347400 | 0.802098 | 6.591898e-49 | -8.615850e-47 |
Msa1208510 | Msa1347400 | 0.845410 | 4.133654e-59 | -8.615850e-47 |
Msa1211930 | Msa1347400 | 0.821352 | 4.225619e-53 | -8.615850e-47 |
Msa1216820 | Msa1347400 | 0.803445 | 3.473741e-49 | -8.615850e-47 |
Msa0490440 | Msa1347400 | 0.933167 | 2.834261e-95 | -8.615850e-47 |
Msa0498090 | Msa1347400 | 0.823376 | 1.432168e-53 | -8.615850e-47 |
Msa0509530 | Msa1347400 | 0.809233 | 2.094217e-50 | -8.615850e-47 |
Msa0514280 | Msa1347400 | 0.867637 | 1.181688e-65 | -8.615850e-47 |
Msa0522990 | Msa1347400 | 0.809441 | 1.889477e-50 | -8.615850e-47 |
Msa0544780 | Msa1347400 | 0.804190 | 2.432699e-49 | -8.615850e-47 |
Msa0547790 | Msa1347400 | 0.834103 | 3.636265e-56 | -8.615850e-47 |
Msa0552920 | Msa1347400 | 0.808946 | 2.411896e-50 | -8.615850e-47 |
Msa0571070 | Msa1347400 | 0.831196 | 1.914052e-55 | -8.615850e-47 |
Msa0602670 | Msa1347400 | 0.823621 | 1.255304e-53 | -8.615850e-47 |
Msa0851870 | Msa1347400 | 0.833658 | 4.699876e-56 | -8.615850e-47 |
Msa0855560 | Msa1347400 | 0.806510 | 7.941909e-50 | -8.615850e-47 |
Msa0868140 | Msa1347400 | 0.802152 | 6.426052e-49 | -8.615850e-47 |
Msa0871860 | Msa1347400 | 0.827621 | 1.413798e-54 | -8.615850e-47 |
Msa0880520 | Msa1347400 | 0.818226 | 2.188688e-52 | -8.615850e-47 |
Msa0886880 | Msa1347400 | 0.847357 | 1.217137e-59 | -8.615850e-47 |
Msa0905200 | Msa1347400 | 0.824651 | 7.190273e-54 | -8.615850e-47 |
Msa0921200 | Msa1347400 | 0.804447 | 2.151289e-49 | -8.615850e-47 |
Msa0937180 | Msa1347400 | 0.829969 | 3.822646e-55 | -8.615850e-47 |
Msa0937190 | Msa1347400 | 0.829985 | 3.789400e-55 | -8.615850e-47 |
Msa0937200 | Msa1347400 | 0.805230 | 1.475472e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1347400 | MtrunA17_Chr3g0118471 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 4.94e-129 | 361 |
Msa1347400 | MtrunA17_Chr5g0395001 | 39.200 | 125 | 73 | 2 | 46 | 170 | 24 | 145 | 2.18e-18 | 78.6 |
Msa1347400 | MtrunA17_Chr1g0205201 | 40.659 | 91 | 51 | 2 | 46 | 136 | 24 | 111 | 5.25e-16 | 72.0 |
Msa1347400 | MtrunA17_Chr2g0278981 | 40.206 | 97 | 55 | 2 | 34 | 130 | 20 | 113 | 9.32e-16 | 72.4 |
Msa1347400 | MtrunA17_Chr5g0429901 | 34.328 | 134 | 78 | 3 | 42 | 175 | 28 | 151 | 2.14e-15 | 71.2 |
Msa1347400 | MtrunA17_Chr2g0278971 | 37.190 | 121 | 63 | 4 | 57 | 177 | 83 | 190 | 1.78e-14 | 69.3 |
Msa1347400 | MtrunA17_Chr7g0260061 | 36.000 | 125 | 73 | 5 | 47 | 169 | 28 | 147 | 6.34e-13 | 64.7 |
Msa1347400 | MtrunA17_Chr1g0205181 | 36.029 | 136 | 61 | 4 | 46 | 181 | 24 | 133 | 1.67e-12 | 62.8 |
Msa1347400 | MtrunA17_Chr1g0205191 | 36.735 | 98 | 57 | 3 | 42 | 139 | 20 | 112 | 1.92e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1347400 | AT3G43720.2 | 47.015 | 134 | 63 | 3 | 43 | 169 | 32 | 164 | 1.36e-28 | 106 |
Msa1347400 | AT3G43720.1 | 46.324 | 136 | 63 | 3 | 43 | 169 | 32 | 166 | 8.08e-28 | 104 |
Msa1347400 | AT2G27130.1 | 43.519 | 108 | 59 | 2 | 34 | 140 | 24 | 130 | 1.03e-23 | 93.2 |
Msa1347400 | AT1G03103.1 | 35.443 | 158 | 85 | 5 | 49 | 204 | 24 | 166 | 4.33e-16 | 73.2 |
Msa1347400 | AT3G22600.1 | 40.698 | 86 | 48 | 2 | 46 | 131 | 24 | 106 | 8.18e-16 | 72.4 |
Msa1347400 | AT2G48130.2 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
Msa1347400 | AT2G48130.6 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
Msa1347400 | AT2G48130.4 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
Msa1347400 | AT2G48130.5 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
Msa1347400 | AT2G48130.1 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
Msa1347400 | AT2G48130.3 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.22e-15 | 71.6 |
Msa1347400 | AT4G08670.1 | 34.356 | 163 | 94 | 6 | 42 | 197 | 40 | 196 | 6.66e-15 | 70.9 |
Msa1347400 | AT2G13820.1 | 35.772 | 123 | 75 | 2 | 50 | 170 | 27 | 147 | 1.10e-14 | 69.3 |
Msa1347400 | AT2G13820.3 | 35.772 | 123 | 75 | 2 | 50 | 170 | 39 | 159 | 1.30e-14 | 69.3 |
Msa1347400 | AT5G64080.1 | 30.909 | 165 | 93 | 5 | 42 | 206 | 36 | 179 | 8.12e-14 | 67.4 |
Msa1347400 | AT5G64080.2 | 33.077 | 130 | 77 | 4 | 42 | 165 | 36 | 161 | 8.90e-14 | 67.0 |
Msa1347400 | AT4G14815.1 | 35.484 | 93 | 57 | 2 | 40 | 132 | 16 | 105 | 3.01e-13 | 65.1 |
Msa1347400 | AT5G09370.3 | 34.188 | 117 | 69 | 3 | 50 | 163 | 28 | 139 | 3.66e-13 | 65.1 |
Msa1347400 | AT2G13820.2 | 37.662 | 77 | 46 | 1 | 54 | 130 | 31 | 105 | 8.11e-13 | 63.2 |
Msa1347400 | AT5G09370.1 | 35.714 | 98 | 58 | 2 | 50 | 147 | 28 | 120 | 2.65e-12 | 62.8 |
Msa1347400 | AT5G09370.2 | 37.931 | 87 | 49 | 2 | 60 | 146 | 38 | 119 | 1.49e-11 | 60.1 |
Find 71 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTATTACACACTTTAATT+AGG | 0.225161 | tig0009737:+15345 | Msa1347400:three_prime_UTR |
CTTCTGGTGGCAGAATTTAA+TGG | 0.240915 | tig0009737:-12645 | Msa1347400:intergenic |
AGCCCTTCTGGAAGCAAAAT+TGG | 0.248172 | tig0009737:+15150 | Msa1347400:CDS |
GCAGGTGTTCTTAGCCCTTC+TGG | 0.257309 | tig0009737:+15138 | Msa1347400:intron |
AACAGCTTACACAAACAAAT+AGG | 0.265322 | tig0009737:-13107 | Msa1347400:intergenic |
GGCGCTAAAACCGCGGTTTC+CGG | 0.269928 | tig0009737:-12948 | Msa1347400:intergenic |
TATTGAGTGCTTTGCTTTAG+TGG | 0.271967 | tig0009737:+15318 | Msa1347400:three_prime_UTR |
TTTGCATCACTCTCATTTCA+TGG | 0.285544 | tig0009737:+12885 | Msa1347400:CDS |
ATAAATAGAGGGACTTGATT+TGG | 0.291910 | tig0009737:-12684 | Msa1347400:intergenic |
ACTACCGAGTTCTTCGTTCT+TGG | 0.317095 | tig0009737:+15382 | Msa1347400:three_prime_UTR |
AAAGCACTCAATACACAAAT+AGG | 0.323137 | tig0009737:-15308 | Msa1347400:intergenic |
GGACTTAGGGCTGATCCTTT+TGG | 0.329469 | tig0009737:-14797 | Msa1347400:intergenic |
TATATATAATATAGTCTATT+CGG | 0.351497 | tig0009737:-15528 | Msa1347400:intergenic |
TGGAGTATCTGCTGCTGCTT+TGG | 0.352720 | tig0009737:+12911 | Msa1347400:CDS |
CCTCCTGTTAGTGCTTGTTC+AGG | 0.362697 | tig0009737:+13215 | Msa1347400:CDS |
CTTAAGCTTCCAACTATTTG+TGG | 0.365023 | tig0009737:+13182 | Msa1347400:CDS |
ATTTGTTTGTGTAAGCTGTT+AGG | 0.384262 | tig0009737:+13110 | Msa1347400:CDS |
CGGTGCAAAATGAGTTAGTT+AGG | 0.388672 | tig0009737:+12606 | Msa1347400:five_prime_UTR |
TGAATATGTGTTATTATGAT+TGG | 0.393179 | tig0009737:-12728 | Msa1347400:intergenic |
TCAACTTCATCTGATAGTTC+AGG | 0.394833 | tig0009737:+14821 | Msa1347400:CDS |
GTCAGATTGTTTGACATTTG+TGG | 0.406541 | tig0009737:+13013 | Msa1347400:CDS |
GAGTTAGCAGGGTTGATTGA+TGG | 0.411939 | tig0009737:+13080 | Msa1347400:CDS |
AATGTAAAATCAGAAGAATA+TGG | 0.417381 | tig0009737:-15238 | Msa1347400:intergenic |
AGTGCTTTGCTTTAGTGGAT+TGG | 0.419671 | tig0009737:+15323 | Msa1347400:three_prime_UTR |
TCAGGACAACATCCTTTGTC+TGG | 0.420386 | tig0009737:-13059 | Msa1347400:intergenic |
TGATTGGTATGTTATATAGT+TGG | 0.424649 | tig0009737:-12712 | Msa1347400:intergenic |
TTACCTGAACAAGCACTAAC+AGG | 0.424650 | tig0009737:-13218 | Msa1347400:intergenic |
AGATGAAGTTGAAGGACTTA+GGG | 0.439279 | tig0009737:-14810 | Msa1347400:intergenic |
TGTTTGACATTTGTGGAAGA+TGG | 0.446855 | tig0009737:+13020 | Msa1347400:CDS |
CTATATAGCAAGAATGTAGT+TGG | 0.452894 | tig0009737:-15435 | Msa1347400:intergenic |
GGTAATGCTGCTGATTCTAT+TGG | 0.462047 | tig0009737:+13134 | Msa1347400:CDS |
ACAGCTTACACAAACAAATA+GGG | 0.462564 | tig0009737:-13106 | Msa1347400:intergenic |
CAGATGAAGTTGAAGGACTT+AGG | 0.463432 | tig0009737:-14811 | Msa1347400:intergenic |
AAAACCGCGGTTTCCGGTGC+CGG | 0.471159 | tig0009737:-12942 | Msa1347400:intergenic |
GCGCCATCACCGGCAGATGA+TGG | 0.475243 | tig0009737:+12966 | Msa1347400:CDS |
GGCAGATGATGGATGCTTGA+TGG | 0.475901 | tig0009737:+12977 | Msa1347400:CDS |
GGATGTTGTCCTGAGTTAGC+AGG | 0.476788 | tig0009737:+13068 | Msa1347400:CDS |
TGCTGCTTTGGCTCAATCAC+CGG | 0.486295 | tig0009737:+12923 | Msa1347400:CDS |
GTTTGACATTTGTGGAAGAT+GGG | 0.488176 | tig0009737:+13021 | Msa1347400:CDS |
TCACTCTCATTTCATGGAGA+TGG | 0.490910 | tig0009737:+12891 | Msa1347400:CDS |
GTAGTAACACCACAAATAGT+TGG | 0.491016 | tig0009737:-13191 | Msa1347400:intergenic |
GAACTATCAGATGAAGTTGA+AGG | 0.493768 | tig0009737:-14818 | Msa1347400:intergenic |
CATCCATCATCTGCCGGTGA+TGG | 0.511093 | tig0009737:-12969 | Msa1347400:intergenic |
TAGTTGGAGTAAATAAATAG+AGG | 0.514530 | tig0009737:-12696 | Msa1347400:intergenic |
TTTGGCTCAATCACCGGCAC+CGG | 0.516118 | tig0009737:+12929 | Msa1347400:CDS |
ACTCGGTAGTGTTGTGATGT+AGG | 0.516958 | tig0009737:-15369 | Msa1347400:intergenic |
TATATAGCAAGAATGTAGTT+GGG | 0.527922 | tig0009737:-15434 | Msa1347400:intergenic |
GATATGGCAATGTCACCAAA+AGG | 0.530694 | tig0009737:+14782 | Msa1347400:intron |
AATGAGTTTCTAACTTCTGG+TGG | 0.552507 | tig0009737:-12658 | Msa1347400:intergenic |
CCTTCTGGAAGCAAAATTGG+AGG | 0.554339 | tig0009737:+15153 | Msa1347400:CDS |
TGCAGAGGCTTGAATGCTTG+AGG | 0.572865 | tig0009737:-15178 | Msa1347400:intergenic |
TCAATCAACCCTGCTAACTC+AGG | 0.575923 | tig0009737:-13077 | Msa1347400:intergenic |
TCCACTCAGTGATGGAGGCA+AGG | 0.577085 | tig0009737:-14611 | Msa1347400:intergenic |
CGGTGATGGCGCTAAAACCG+CGG | 0.578610 | tig0009737:-12955 | Msa1347400:intergenic |
TGGAGACAGAGACAGTGGAC+AGG | 0.579721 | tig0009737:-15218 | Msa1347400:intergenic |
ATAGCATCTCCACTCAGTGA+TGG | 0.584097 | tig0009737:-14619 | Msa1347400:intergenic |
ATCAAGCATCCATCATCTGC+CGG | 0.595406 | tig0009737:-12975 | Msa1347400:intergenic |
GATGTTGTCCTGAGTTAGCA+GGG | 0.597137 | tig0009737:+13069 | Msa1347400:CDS |
TGCAAAGAGTAAAGAAACAA+TGG | 0.599464 | tig0009737:-12868 | Msa1347400:intergenic |
AGTTGGAGTAAATAAATAGA+GGG | 0.601980 | tig0009737:-12695 | Msa1347400:intergenic |
GAATATGGAGACAGAGACAG+TGG | 0.605345 | tig0009737:-15223 | Msa1347400:intergenic |
GCATCTCCACTCAGTGATGG+AGG | 0.609350 | tig0009737:-14616 | Msa1347400:intergenic |
ATATGAAACTAATGACACAT+AGG | 0.618243 | tig0009737:-15270 | Msa1347400:intergenic |
GGAGACAGAGACAGTGGACA+GGG | 0.621999 | tig0009737:-15217 | Msa1347400:intergenic |
AGTGATGGAGGCAAGGACAC+AGG | 0.629179 | tig0009737:-14604 | Msa1347400:intergenic |
ATCACCAAGAACGAAGAACT+CGG | 0.632446 | tig0009737:-15386 | Msa1347400:intergenic |
TGTTTGTGTAAGCTGTTAGG+TGG | 0.635667 | tig0009737:+13113 | Msa1347400:CDS |
TCCTTGCCTCCATCACTGAG+TGG | 0.643834 | tig0009737:+14610 | Msa1347400:CDS |
ATCACCGGCACCGGAAACCG+CGG | 0.645420 | tig0009737:+12938 | Msa1347400:CDS |
AAGTTGACAAAACCAGACAA+AGG | 0.698102 | tig0009737:+13047 | Msa1347400:CDS |
CCTGAACAAGCACTAACAGG+AGG | 0.707608 | tig0009737:-13215 | Msa1347390:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTCAAATTTTAAAATATT+TGG | + | tig0009737:13278-13297 | Msa1347400:intron | 10.0% |
!! | AACATTATATTATATCTATA+TGG | + | tig0009737:13334-13353 | Msa1347400:intron | 10.0% |
!! | TTAAAATAATGTTAAAACAA+AGG | - | tig0009737:13939-13958 | Msa1347400:intergenic | 10.0% |
!! | TCAAAAAGAAAATAAAAAAA+GGG | - | tig0009737:14359-14378 | Msa1347400:intergenic | 10.0% |
!! | TTCAAAAAGAAAATAAAAAA+AGG | - | tig0009737:14360-14379 | Msa1347400:intergenic | 10.0% |
!! | TATATATAATATAGTCTATT+CGG | - | tig0009737:15531-15550 | Msa1347400:intergenic | 10.0% |
!!! | TTGATCTTAAAATGTTTTTT+TGG | + | tig0009737:13649-13668 | Msa1347400:intron | 15.0% |
!!! | ATTTTTAAGTTTTGTTTGAT+AGG | - | tig0009737:13778-13797 | Msa1347400:intergenic | 15.0% |
!! | TTATATATTACCAATGATTA+TGG | + | tig0009737:13827-13846 | Msa1347400:intron | 15.0% |
!! | GTTAAAATATACACTATAAT+TGG | + | tig0009737:13990-14009 | Msa1347400:intron | 15.0% |
!! | ACAATTATTAAATTCAAAGA+AGG | - | tig0009737:14115-14134 | Msa1347400:intergenic | 15.0% |
!!! | GTGTTACAATTATTTATTTT+GGG | - | tig0009737:14305-14324 | Msa1347400:intergenic | 15.0% |
!!! | TGTGTTACAATTATTTATTT+TGG | - | tig0009737:14306-14325 | Msa1347400:intergenic | 15.0% |
!! | AAAAGAAAATAAAAAAAGAG+TGG | - | tig0009737:14411-14430 | Msa1347400:intergenic | 15.0% |
!! | AACAACAATAAATTAACTTA+TGG | - | tig0009737:14662-14681 | Msa1347400:intergenic | 15.0% |
!! | TTGATAAAATAATGAAGATA+TGG | + | tig0009737:14766-14785 | Msa1347400:intron | 15.0% |
!! | TAATGATCATAAATATCAAT+CGG | + | tig0009737:14934-14953 | Msa1347400:intron | 15.0% |
!! | TGGATCCAAAAATAAATAAA+CGG | + | tig0009737:12586-12605 | Msa1347400:five_prime_UTR | 20.0% |
!!! | TGAATATGTGTTATTATGAT+TGG | - | tig0009737:12731-12750 | Msa1347400:intergenic | 20.0% |
!! | GATTATTTGTCTTTCATATT+TGG | + | tig0009737:13421-13440 | Msa1347400:intron | 20.0% |
!! | GCATTATAATAACTAAATTG+TGG | + | tig0009737:13557-13576 | Msa1347400:intron | 20.0% |
!! | AAGATCCTATAAAAAACTTT+AGG | - | tig0009737:13589-13608 | Msa1347400:intergenic | 20.0% |
!! | ATTATTAAATTCAAAGAAGG+CGG | - | tig0009737:14112-14131 | Msa1347400:intergenic | 20.0% |
!! | GTTTAAATAACTAAATATGG+TGG | - | tig0009737:14197-14216 | Msa1347400:intergenic | 20.0% |
!! | GTGGTTTAAATAACTAAATA+TGG | - | tig0009737:14200-14219 | Msa1347400:intergenic | 20.0% |
!! | TTATATTGCAATTACTAGTA+AGG | + | tig0009737:14225-14244 | Msa1347400:intron | 20.0% |
!!! | TTTATTTGTTGAATGGTAAA+GGG | - | tig0009737:14263-14282 | Msa1347400:intergenic | 20.0% |
!!! | ATTTATTTGTTGAATGGTAA+AGG | - | tig0009737:14264-14283 | Msa1347400:intergenic | 20.0% |
!! | TATGTAAATTTACATGAACT+TGG | + | tig0009737:14497-14516 | Msa1347400:intron | 20.0% |
!! | TAACTTAAGTAAAACTCATT+TGG | + | tig0009737:14892-14911 | Msa1347400:intron | 20.0% |
!! | TTGATGGAAAATTCTATATT+TGG | - | tig0009737:15074-15093 | Msa1347400:intergenic | 20.0% |
!! | AATGTAAAATCAGAAGAATA+TGG | - | tig0009737:15241-15260 | Msa1347400:intergenic | 20.0% |
!! | GATTATTACACACTTTAATT+AGG | + | tig0009737:15345-15364 | Msa1347400:three_prime_UTR | 20.0% |
!!! | TTGCACCGTTTATTTATTTT+TGG | - | tig0009737:12594-12613 | Msa1347400:intergenic | 25.0% |
! | AAAAATGAGTTTCTAACTTC+TGG | - | tig0009737:12664-12683 | Msa1347400:intergenic | 25.0% |
! | AGTTGGAGTAAATAAATAGA+GGG | - | tig0009737:12698-12717 | Msa1347400:intergenic | 25.0% |
! | TAGTTGGAGTAAATAAATAG+AGG | - | tig0009737:12699-12718 | Msa1347400:intergenic | 25.0% |
! | TGATTGGTATGTTATATAGT+TGG | - | tig0009737:12715-12734 | Msa1347400:intergenic | 25.0% |
!!! | TTAGTTTTTGTGATAGGTTT+TGG | - | tig0009737:12822-12841 | Msa1347400:intergenic | 25.0% |
! | ACCTATCACAAAAACTAAAA+TGG | + | tig0009737:12824-12843 | Msa1347400:exon | 25.0% |
! | TTTATGATTATGTGAGACTT+TGG | + | tig0009737:13535-13554 | Msa1347400:intron | 25.0% |
!!! | CACATCCTAAAGTTTTTTAT+AGG | + | tig0009737:13581-13600 | Msa1347400:intron | 25.0% |
! | CAATAATAGACCATAATCAT+TGG | - | tig0009737:13840-13859 | Msa1347400:intergenic | 25.0% |
!! | TTGGCAATTTATTTGTTGAA+TGG | - | tig0009737:14270-14289 | Msa1347400:intergenic | 25.0% |
! | CAACAAATAAATTGCCAATA+AGG | + | tig0009737:14272-14291 | Msa1347400:intron | 25.0% |
! | ACAAATTAAGGTGAACAATT+TGG | - | tig0009737:14334-14353 | Msa1347400:intergenic | 25.0% |
! | AAAAAAAGGGTGACAAATTA+AGG | - | tig0009737:14346-14365 | Msa1347400:intergenic | 25.0% |
! | TAACTTATGGAAAACTTACT+TGG | - | tig0009737:14649-14668 | Msa1347400:intergenic | 25.0% |
! | CATGCACATAAAAGTTAATA+AGG | - | tig0009737:15022-15041 | Msa1347400:intergenic | 25.0% |
!! | CTTATTAACTTTTATGTGCA+TGG | + | tig0009737:15020-15039 | Msa1347400:intron | 25.0% |
! | ACTTTAGTACTATATGTTGA+TGG | - | tig0009737:15090-15109 | Msa1347400:intergenic | 25.0% |
!!! | TGTATTTTTCAAAATTGTGC+AGG | + | tig0009737:15120-15139 | Msa1347400:intron | 25.0% |
! | ATATGAAACTAATGACACAT+AGG | - | tig0009737:15273-15292 | Msa1347400:intergenic | 25.0% |
! | TATATAGCAAGAATGTAGTT+GGG | - | tig0009737:15437-15456 | Msa1347400:intergenic | 25.0% |
!! | AATTTTGAGAGGATAGAAGT+TGG | + | tig0009737:12566-12585 | Msa1347400:five_prime_UTR | 30.0% |
ATAAATAGAGGGACTTGATT+TGG | - | tig0009737:12687-12706 | Msa1347400:intergenic | 30.0% | |
!!! | GCCATTTTAGTTTTTGTGAT+AGG | - | tig0009737:12828-12847 | Msa1347400:intergenic | 30.0% |
TGCAAAGAGTAAAGAAACAA+TGG | - | tig0009737:12871-12890 | Msa1347400:intergenic | 30.0% | |
ACAGCTTACACAAACAAATA+GGG | - | tig0009737:13109-13128 | Msa1347400:intergenic | 30.0% | |
AACAGCTTACACAAACAAAT+AGG | - | tig0009737:13110-13129 | Msa1347400:intergenic | 30.0% | |
ATTTGTTTGTGTAAGCTGTT+AGG | + | tig0009737:13110-13129 | Msa1347400:CDS | 30.0% | |
TATTTAGTTAGCCATCTTGT+CGG | + | tig0009737:13621-13640 | Msa1347400:intron | 30.0% | |
AAACAAAGGTAACACTATGT+TGG | - | tig0009737:13925-13944 | Msa1347400:intergenic | 30.0% | |
! | AATAACTAAATATGGTGGAG+AGG | - | tig0009737:14192-14211 | Msa1347400:intergenic | 30.0% |
TAATTGCAATATAACTGCTG+TGG | - | tig0009737:14219-14238 | Msa1347400:intergenic | 30.0% | |
ATTGCAATTACTAGTAAGGT+AGG | + | tig0009737:14229-14248 | Msa1347400:intron | 30.0% | |
TTGCAATTACTAGTAAGGTA+GGG | + | tig0009737:14230-14249 | Msa1347400:intron | 30.0% | |
ATAAATTGCCAATAAGGTGT+AGG | + | tig0009737:14278-14297 | Msa1347400:intron | 30.0% | |
GACAAATTAAGGTGAACAAT+TGG | - | tig0009737:14335-14354 | Msa1347400:intergenic | 30.0% | |
TATATATGTGTCACAGCTAT+TGG | + | tig0009737:14577-14596 | Msa1347400:intron | 30.0% | |
! | AAAGCACTCAATACACAAAT+AGG | - | tig0009737:15311-15330 | Msa1347400:intergenic | 30.0% |
CTATATAGCAAGAATGTAGT+TGG | - | tig0009737:15438-15457 | Msa1347400:intergenic | 30.0% | |
AATGAGTTTCTAACTTCTGG+TGG | - | tig0009737:12661-12680 | Msa1347400:intergenic | 35.0% | |
!!! | TTGTGATAGGTTTTGGACTT+TGG | - | tig0009737:12815-12834 | Msa1347400:intergenic | 35.0% |
TTTGCATCACTCTCATTTCA+TGG | + | tig0009737:12885-12904 | Msa1347400:CDS | 35.0% | |
GTCAGATTGTTTGACATTTG+TGG | + | tig0009737:13013-13032 | Msa1347400:CDS | 35.0% | |
TGTTTGACATTTGTGGAAGA+TGG | + | tig0009737:13020-13039 | Msa1347400:CDS | 35.0% | |
GTTTGACATTTGTGGAAGAT+GGG | + | tig0009737:13021-13040 | Msa1347400:CDS | 35.0% | |
AAGTTGACAAAACCAGACAA+AGG | + | tig0009737:13047-13066 | Msa1347400:CDS | 35.0% | |
CTTAAGCTTCCAACTATTTG+TGG | + | tig0009737:13182-13201 | Msa1347400:CDS | 35.0% | |
GTAGTAACACCACAAATAGT+TGG | - | tig0009737:13194-13213 | Msa1347400:intergenic | 35.0% | |
CTTCTTAGGTTTAGGTATGT+TGG | - | tig0009737:13889-13908 | Msa1347400:intergenic | 35.0% | |
TTGTCTCTCTTCTTAGGTTT+AGG | - | tig0009737:13897-13916 | Msa1347400:intergenic | 35.0% | |
GTAACTTTGTCTCTCTTCTT+AGG | - | tig0009737:13903-13922 | Msa1347400:intergenic | 35.0% | |
AATTCCATTACACATGGTGA+TGG | - | tig0009737:14056-14075 | Msa1347400:intergenic | 35.0% | |
! | ATCACCATGTGTAATGGAAT+TGG | + | tig0009737:14055-14074 | Msa1347400:intron | 35.0% |
CTATCCAATTCCATTACACA+TGG | - | tig0009737:14062-14081 | Msa1347400:intergenic | 35.0% | |
TTAAGGTGAACAATTTGGAG+TGG | - | tig0009737:14329-14348 | Msa1347400:intergenic | 35.0% | |
AAGAGTGGCATGACAAATTA+AGG | - | tig0009737:14396-14415 | Msa1347400:intergenic | 35.0% | |
GAAATTACCTTGATCATCTG+TGG | + | tig0009737:14725-14744 | Msa1347400:intron | 35.0% | |
TAAGTTACCACAGATGATCA+AGG | - | tig0009737:14735-14754 | Msa1347400:intergenic | 35.0% | |
AGATGAAGTTGAAGGACTTA+GGG | - | tig0009737:14813-14832 | Msa1347400:intergenic | 35.0% | |
GAACTATCAGATGAAGTTGA+AGG | - | tig0009737:14821-14840 | Msa1347400:intergenic | 35.0% | |
TCAACTTCATCTGATAGTTC+AGG | + | tig0009737:14821-14840 | Msa1347400:CDS | 35.0% | |
AAAAATGAAAGTCAGTGCAG+AGG | - | tig0009737:15196-15215 | Msa1347400:intergenic | 35.0% | |
TATTGAGTGCTTTGCTTTAG+TGG | + | tig0009737:15318-15337 | Msa1347400:three_prime_UTR | 35.0% | |
CGGTGCAAAATGAGTTAGTT+AGG | + | tig0009737:12606-12625 | Msa1347400:five_prime_UTR | 40.0% | |
CTTCTGGTGGCAGAATTTAA+TGG | - | tig0009737:12648-12667 | Msa1347400:intergenic | 40.0% | |
TCACTCTCATTTCATGGAGA+TGG | + | tig0009737:12891-12910 | Msa1347400:CDS | 40.0% | |
TGTTTGTGTAAGCTGTTAGG+TGG | + | tig0009737:13113-13132 | Msa1347400:CDS | 40.0% | |
!! | GGTAATGCTGCTGATTCTAT+TGG | + | tig0009737:13134-13153 | Msa1347400:CDS | 40.0% |
TTACCTGAACAAGCACTAAC+AGG | - | tig0009737:13221-13240 | Msa1347400:intergenic | 40.0% | |
CTCATCATTGTCTCTCATCT+AGG | - | tig0009737:13491-13510 | Msa1347400:intergenic | 40.0% | |
AGAGACAATGATGAGTGAAG+AGG | + | tig0009737:13496-13515 | Msa1347400:intron | 40.0% | |
GAGACAATGATGAGTGAAGA+GGG | + | tig0009737:13497-13516 | Msa1347400:intron | 40.0% | |
GATCAAAATAGCCGACAAGA+TGG | - | tig0009737:13635-13654 | Msa1347400:intergenic | 40.0% | |
!! | TTTTGGGTCCTACACCTTAT+TGG | - | tig0009737:14289-14308 | Msa1347400:intergenic | 40.0% |
GATATGGCAATGTCACCAAA+AGG | + | tig0009737:14782-14801 | Msa1347400:intron | 40.0% | |
CAGATGAAGTTGAAGGACTT+AGG | - | tig0009737:14814-14833 | Msa1347400:intergenic | 40.0% | |
! | CTCCAATTTTGCTTCCAGAA+GGG | - | tig0009737:15155-15174 | Msa1347400:intergenic | 40.0% |
! | AGTGCTTTGCTTTAGTGGAT+TGG | + | tig0009737:15323-15342 | Msa1347400:three_prime_UTR | 40.0% |
ATCACCAAGAACGAAGAACT+CGG | - | tig0009737:15389-15408 | Msa1347400:intergenic | 40.0% | |
ATCAAGCATCCATCATCTGC+CGG | - | tig0009737:12978-12997 | Msa1347400:intergenic | 45.0% | |
TCAGGACAACATCCTTTGTC+TGG | - | tig0009737:13062-13081 | Msa1347400:intergenic | 45.0% | |
GATGTTGTCCTGAGTTAGCA+GGG | + | tig0009737:13069-13088 | Msa1347400:CDS | 45.0% | |
TCAATCAACCCTGCTAACTC+AGG | - | tig0009737:13080-13099 | Msa1347400:intergenic | 45.0% | |
! | GAGTTAGCAGGGTTGATTGA+TGG | + | tig0009737:13080-13099 | Msa1347400:CDS | 45.0% |
!! | ACATGGTGATGGACTGACAT+TGG | - | tig0009737:14045-14064 | Msa1347400:intergenic | 45.0% |
CAGTCCATCACCATGTGTAA+TGG | + | tig0009737:14049-14068 | Msa1347400:intron | 45.0% | |
GAAGGCGGTATCAACAAAGA+AGG | - | tig0009737:14097-14116 | Msa1347400:intergenic | 45.0% | |
ATAGCATCTCCACTCAGTGA+TGG | - | tig0009737:14622-14641 | Msa1347400:intergenic | 45.0% | |
! | AGCCCTTCTGGAAGCAAAAT+TGG | + | tig0009737:15150-15169 | Msa1347400:CDS | 45.0% |
! | CCTCCAATTTTGCTTCCAGA+AGG | - | tig0009737:15156-15175 | Msa1347400:intergenic | 45.0% |
! | CCTTCTGGAAGCAAAATTGG+AGG | + | tig0009737:15153-15172 | Msa1347400:CDS | 45.0% |
GAATATGGAGACAGAGACAG+TGG | - | tig0009737:15226-15245 | Msa1347400:intergenic | 45.0% | |
ACTCGGTAGTGTTGTGATGT+AGG | - | tig0009737:15372-15391 | Msa1347400:intergenic | 45.0% | |
ACTACCGAGTTCTTCGTTCT+TGG | + | tig0009737:15382-15401 | Msa1347400:three_prime_UTR | 45.0% | |
!! | AAAACTTAAAAATAATAATT+TGG | + | tig0009737:13785-13804 | Msa1347400:intron | 5.0% |
!!! | TTTTTTTTTTTTTTTTTTGA+AGG | + | tig0009737:14975-14994 | Msa1347400:intron | 5.0% |
! | TGGAGTATCTGCTGCTGCTT+TGG | + | tig0009737:12911-12930 | Msa1347400:CDS | 50.0% |
!! | TGCTGCTTTGGCTCAATCAC+CGG | + | tig0009737:12923-12942 | Msa1347400:CDS | 50.0% |
!! | GGCAGATGATGGATGCTTGA+TGG | + | tig0009737:12977-12996 | Msa1347400:CDS | 50.0% |
GGATGTTGTCCTGAGTTAGC+AGG | + | tig0009737:13068-13087 | Msa1347400:CDS | 50.0% | |
CCTGAACAAGCACTAACAGG+AGG | - | tig0009737:13218-13237 | Msa1347400:intergenic | 50.0% | |
CCTCCTGTTAGTGCTTGTTC+AGG | + | tig0009737:13215-13234 | Msa1347400:CDS | 50.0% | |
! | GGACTTAGGGCTGATCCTTT+TGG | - | tig0009737:14800-14819 | Msa1347400:intergenic | 50.0% |
TGCAGAGGCTTGAATGCTTG+AGG | - | tig0009737:15181-15200 | Msa1347400:intergenic | 50.0% | |
! | TTTGGCTCAATCACCGGCAC+CGG | + | tig0009737:12929-12948 | Msa1347400:CDS | 55.0% |
CATCCATCATCTGCCGGTGA+TGG | - | tig0009737:12972-12991 | Msa1347400:intergenic | 55.0% | |
! | AGTGATGGAGGCAAGGACAC+AGG | - | tig0009737:14607-14626 | Msa1347400:intergenic | 55.0% |
TCCTTGCCTCCATCACTGAG+TGG | + | tig0009737:14610-14629 | Msa1347400:CDS | 55.0% | |
! | TCCACTCAGTGATGGAGGCA+AGG | - | tig0009737:14614-14633 | Msa1347400:intergenic | 55.0% |
GCATCTCCACTCAGTGATGG+AGG | - | tig0009737:14619-14638 | Msa1347400:intergenic | 55.0% | |
GCAGGTGTTCTTAGCCCTTC+TGG | + | tig0009737:15138-15157 | Msa1347400:intron | 55.0% | |
GGAGACAGAGACAGTGGACA+GGG | - | tig0009737:15220-15239 | Msa1347400:intergenic | 55.0% | |
TGGAGACAGAGACAGTGGAC+AGG | - | tig0009737:15221-15240 | Msa1347400:intergenic | 55.0% | |
AAAACCGCGGTTTCCGGTGC+CGG | - | tig0009737:12945-12964 | Msa1347400:intergenic | 60.0% | |
GGCGCTAAAACCGCGGTTTC+CGG | - | tig0009737:12951-12970 | Msa1347400:intergenic | 60.0% | |
! | CGGTGATGGCGCTAAAACCG+CGG | - | tig0009737:12958-12977 | Msa1347400:intergenic | 60.0% |
!! | CGCGGTTTTAGCGCCATCAC+CGG | + | tig0009737:12956-12975 | Msa1347400:CDS | 60.0% |
! | ATCACCGGCACCGGAAACCG+CGG | + | tig0009737:12938-12957 | Msa1347400:CDS | 65.0% |
GCGCCATCACCGGCAGATGA+TGG | + | tig0009737:12966-12985 | Msa1347400:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0009737 | gene | 12564 | 15567 | 12564 | ID=Msa1347400;Name=Msa1347400 |
tig0009737 | mRNA | 12564 | 15567 | 12564 | ID=Msa1347400-mRNA-1;Parent=Msa1347400;Name=Msa1347400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=279|1|1|1|1|1|4|316|206 |
tig0009737 | exon | 12564 | 13236 | 12564 | ID=Msa1347400-mRNA-1:exon:5868;Parent=Msa1347400-mRNA-1 |
tig0009737 | exon | 14593 | 14649 | 14593 | ID=Msa1347400-mRNA-1:exon:5869;Parent=Msa1347400-mRNA-1 |
tig0009737 | exon | 14783 | 14842 | 14783 | ID=Msa1347400-mRNA-1:exon:5870;Parent=Msa1347400-mRNA-1 |
tig0009737 | exon | 15142 | 15567 | 15142 | ID=Msa1347400-mRNA-1:exon:5871;Parent=Msa1347400-mRNA-1 |
tig0009737 | five_prime_UTR | 12564 | 12842 | 12564 | ID=Msa1347400-mRNA-1:five_prime_utr;Parent=Msa1347400-mRNA-1 |
tig0009737 | CDS | 12843 | 13236 | 12843 | ID=Msa1347400-mRNA-1:cds;Parent=Msa1347400-mRNA-1 |
tig0009737 | CDS | 14593 | 14649 | 14593 | ID=Msa1347400-mRNA-1:cds;Parent=Msa1347400-mRNA-1 |
tig0009737 | CDS | 14783 | 14842 | 14783 | ID=Msa1347400-mRNA-1:cds;Parent=Msa1347400-mRNA-1 |
tig0009737 | CDS | 15142 | 15251 | 15142 | ID=Msa1347400-mRNA-1:cds;Parent=Msa1347400-mRNA-1 |
tig0009737 | three_prime_UTR | 15252 | 15567 | 15252 | ID=Msa1347400-mRNA-1:three_prime_utr;Parent=Msa1347400-mRNA-1 |
Gene Sequence |
Protein sequence |