Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247640 | RZB69456.1 | 63.006 | 173 | 26 | 2 | 73 | 207 | 31 | 203 | 1.69e-64 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247640 | A0A445H795 | 63.006 | 173 | 26 | 2 | 73 | 207 | 31 | 203 | 8.05e-65 | 208 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610840 | Msa1247640 | 0.835288 | 1.830764e-56 | -8.615850e-47 |
| Msa0204960 | Msa1247640 | -0.804236 | 2.379590e-49 | -8.615850e-47 |
| Msa0214550 | Msa1247640 | -0.815067 | 1.117571e-51 | -8.615850e-47 |
| Msa1247640 | Msa1247650 | 0.847264 | 1.290548e-59 | -8.615850e-47 |
| Msa0281530 | Msa1247640 | -0.811298 | 7.508105e-51 | -8.615850e-47 |
| Msa0326480 | Msa1247640 | -0.800809 | 1.210605e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247640 | MtrunA17_Chr5g0412041 | 93.103 | 58 | 4 | 0 | 150 | 207 | 199 | 256 | 4.54e-31 | 119 |
| Msa1247640 | MtrunA17_Chr7g0272231 | 90.196 | 51 | 5 | 0 | 80 | 130 | 95 | 145 | 4.39e-21 | 85.1 |
| Msa1247640 | MtrunA17_Chr7g0223561 | 63.889 | 72 | 23 | 2 | 138 | 207 | 268 | 338 | 4.75e-15 | 72.4 |
| Msa1247640 | MtrunA17_Chr8g0362671 | 54.930 | 71 | 19 | 3 | 1 | 71 | 1 | 58 | 2.39e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTATCAAAGACCATATT+TGG | 0.156995 | 8_2:-40756587 | None:intergenic |
| TGACGATATCAGCAAGGATT+TGG | 0.329955 | 8_2:-40755120 | None:intergenic |
| TCTTCTTACCACGGCGTCTA+CGG | 0.338293 | 8_2:-40756462 | None:intergenic |
| TGGTCTTTGATAGAACATTA+TGG | 0.357002 | 8_2:+40756594 | Msa1247640:CDS |
| CGCTTACTTTACTCTCGTGT+TGG | 0.364189 | 8_2:-40756286 | None:intergenic |
| AACCATTAGAAAAGATTTAG+AGG | 0.369865 | 8_2:+40756550 | Msa1247640:CDS |
| CAATGAGTTGGATCCAAATA+TGG | 0.382094 | 8_2:+40756574 | Msa1247640:CDS |
| ACCTTGCCCTGCCCAACGGC+GGG | 0.389737 | 8_2:+40755635 | Msa1247640:CDS |
| AACTTTCCTTTCAGCTTAAG+TGG | 0.398406 | 8_2:-40756203 | None:intergenic |
| AGATCAAATGGAGGAGAGTC+AGG | 0.409734 | 8_2:+40756487 | Msa1247640:CDS |
| TAGCACTTCCGCCGTAGATT+GGG | 0.419434 | 8_2:-40755613 | None:intergenic |
| TCCGTACCATACAACATTGC+CGG | 0.428350 | 8_2:-40756245 | None:intergenic |
| TTCAAGCTGGGTGGTTGAAA+TGG | 0.430779 | 8_2:+40756144 | Msa1247640:intron |
| GTAGCACTTCCGCCGTAGAT+TGG | 0.436224 | 8_2:-40755614 | None:intergenic |
| TAAACATGAAAGTGAAGATT+CGG | 0.454304 | 8_2:+40755562 | Msa1247640:intron |
| AGTCAGGTTAAAAGAGGTAG+AGG | 0.455911 | 8_2:+40756503 | Msa1247640:CDS |
| ATTCGGTGGCTGCAAGAGAT+TGG | 0.457289 | 8_2:+40755579 | Msa1247640:CDS |
| CTTCTTACCACGGCGTCTAC+GGG | 0.468664 | 8_2:-40756461 | None:intergenic |
| ACTAAGTGGGGTCGGCTACA+TGG | 0.470126 | 8_2:-40756628 | None:intergenic |
| TGTTGTATGGTACGGAGTGT+TGG | 0.484134 | 8_2:+40756252 | Msa1247640:CDS |
| GTTGTATGGTACGGAGTGTT+GGG | 0.485703 | 8_2:+40756253 | Msa1247640:CDS |
| GTCAGACCGGCAATGTTGTA+TGG | 0.492652 | 8_2:+40756239 | Msa1247640:CDS |
| GGTAAGAAGAGTAGATCAAA+TGG | 0.497053 | 8_2:+40756475 | Msa1247640:CDS |
| GCCGTTGGCTCCGCCATCGA+CGG | 0.497724 | 8_2:+40755148 | Msa1247640:CDS |
| TACCTTGCCCTGCCCAACGG+CGG | 0.500465 | 8_2:+40755634 | Msa1247640:CDS |
| AGATTTAGAGGTCAATGAGT+TGG | 0.506040 | 8_2:+40756562 | Msa1247640:CDS |
| ATGTAGCCGACCCCACTTAG+TGG | 0.509347 | 8_2:+40756630 | Msa1247640:CDS |
| CCCCGCCGTTGGGCAGGGCA+AGG | 0.514153 | 8_2:-40755636 | None:intergenic |
| GAGGAGAGTCAGGTTAAAAG+AGG | 0.517218 | 8_2:+40756497 | Msa1247640:CDS |
| AGCTGAAAGGAAAGTTCTAT+CGG | 0.519069 | 8_2:+40756210 | Msa1247640:CDS |
| GGCTCCCTCAAAATCATCCC+TGG | 0.525831 | 8_2:+40755169 | Msa1247640:CDS |
| ACCGGCAATGTTGTATGGTA+CGG | 0.529215 | 8_2:+40756244 | Msa1247640:CDS |
| GCCGTCGATGGCGGAGCCAA+CGG | 0.530410 | 8_2:-40755149 | None:intergenic |
| GGATTTGGCTTAACGAGTTG+CGG | 0.530915 | 8_2:-40755105 | None:intergenic |
| CAACGCCTTATCCCACTAAG+TGG | 0.551576 | 8_2:-40756642 | None:intergenic |
| AAGAAGAGTAGATCAAATGG+AGG | 0.556047 | 8_2:+40756478 | Msa1247640:CDS |
| CCTTGCCCTGCCCAACGGCG+GGG | 0.557382 | 8_2:+40755636 | Msa1247640:CDS |
| TTGAAATGGAGAAGAGCCTC+AGG | 0.558437 | 8_2:+40756158 | Msa1247640:CDS |
| AACGCCTTATCCCACTAAGT+GGG | 0.569166 | 8_2:-40756641 | None:intergenic |
| AGGATGTTGCGTTGGATGAG+TGG | 0.569707 | 8_2:+40756320 | Msa1247640:CDS |
| CGGTGGCTGCAAGAGATTGG+TGG | 0.571244 | 8_2:+40755582 | Msa1247640:CDS |
| AAGTAAGCGTAGCGGAGATG+AGG | 0.580011 | 8_2:+40756300 | Msa1247640:CDS |
| CGGAGATGAGGATGTTGCGT+TGG | 0.581910 | 8_2:+40756312 | Msa1247640:CDS |
| TTGATCTACTCTTCTTACCA+CGG | 0.584343 | 8_2:-40756471 | None:intergenic |
| TGCTACCTTGCCCTGCCCAA+CGG | 0.586162 | 8_2:+40755631 | Msa1247640:CDS |
| TGGAAGACAATCCCAATCTA+CGG | 0.593567 | 8_2:+40755602 | Msa1247640:CDS |
| AAAGTACCACTTAAGCTGAA+AGG | 0.593672 | 8_2:+40756197 | Msa1247640:CDS |
| GATATCGTCAAGTTCGCCGT+TGG | 0.593854 | 8_2:+40755133 | Msa1247640:CDS |
| TTTGAGGGAGCCGTCGATGG+CGG | 0.594485 | 8_2:-40755158 | None:intergenic |
| CTATCGGACAGCAGTCAGAC+CGG | 0.603047 | 8_2:+40756226 | Msa1247640:CDS |
| TGAAACGTTTGACACGGCGG+TGG | 0.610069 | 8_2:-40755080 | None:intergenic |
| ACATGAAAGTGAAGATTCGG+TGG | 0.622160 | 8_2:+40755565 | Msa1247640:intron |
| GAGAAGACCCGTAGACGCCG+TGG | 0.623053 | 8_2:+40756454 | Msa1247640:CDS |
| CTTATCCCACTAAGTGGGGT+CGG | 0.658324 | 8_2:-40756636 | None:intergenic |
| GCGGCGTGAAACGTTTGACA+CGG | 0.668488 | 8_2:-40755086 | None:intergenic |
| CTTATCGCACAAAACACCTG+AGG | 0.671204 | 8_2:-40756174 | None:intergenic |
| ACGCCTTATCCCACTAAGTG+GGG | 0.680454 | 8_2:-40756640 | None:intergenic |
| GCGTGAAACGTTTGACACGG+CGG | 0.689420 | 8_2:-40755083 | None:intergenic |
| GTATGGTACGGAGTGTTGGG+CGG | 0.690097 | 8_2:+40756256 | Msa1247640:CDS |
| CGAACTTGACGATATCAGCA+AGG | 0.709120 | 8_2:-40755126 | None:intergenic |
| CGAGAGTAAAGTAAGCGTAG+CGG | 0.726842 | 8_2:+40756292 | Msa1247640:CDS |
| TCTTTGATAGAACATTATGG+CGG | 0.740869 | 8_2:+40756597 | Msa1247640:CDS |
| AAGACAATCCCAATCTACGG+CGG | 0.746364 | 8_2:+40755605 | Msa1247640:CDS |
| ATCATCGTATTCAAGCTGGG+TGG | 0.749283 | 8_2:+40756135 | Msa1247640:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTAGAAATAAGTTTT+TGG | + | chr8_2:40755488-40755507 | Msa1247640:intron | 10.0% |
| !! | TTAAAGATATATAATTTAAG+AGG | + | chr8_2:40755868-40755887 | Msa1247640:intron | 10.0% |
| !!! | TTTAATTAGAAATAAGTTTT+TGG | + | chr8_2:40755488-40755507 | Msa1247640:intron | 10.0% |
| !! | TTAAAGATATATAATTTAAG+AGG | + | chr8_2:40755868-40755887 | Msa1247640:intron | 10.0% |
| !! | TTACTAATGATTAAAAAAAC+AGG | - | chr8_2:40755385-40755404 | None:intergenic | 15.0% |
| !!! | TTGGTTTTTAATTTACTTAA+TGG | + | chr8_2:40755507-40755526 | Msa1247640:intron | 15.0% |
| !!! | CAAGATATAGATTTTTTTTT+CGG | + | chr8_2:40755839-40755858 | Msa1247640:intron | 15.0% |
| !! | TGAAATGAAAACTAATAAAT+AGG | + | chr8_2:40755952-40755971 | Msa1247640:intron | 15.0% |
| !! | GAAATGAAAACTAATAAATA+GGG | + | chr8_2:40755953-40755972 | Msa1247640:intron | 15.0% |
| !! | TTACTAATGATTAAAAAAAC+AGG | - | chr8_2:40755385-40755404 | None:intergenic | 15.0% |
| !!! | TTGGTTTTTAATTTACTTAA+TGG | + | chr8_2:40755507-40755526 | Msa1247640:intron | 15.0% |
| !!! | CAAGATATAGATTTTTTTTT+CGG | + | chr8_2:40755839-40755858 | Msa1247640:intron | 15.0% |
| !! | TGAAATGAAAACTAATAAAT+AGG | + | chr8_2:40755952-40755971 | Msa1247640:intron | 15.0% |
| !! | GAAATGAAAACTAATAAATA+GGG | + | chr8_2:40755953-40755972 | Msa1247640:intron | 15.0% |
| !! | AAAAAAAGTAACATCATTGT+TGG | + | chr8_2:40755304-40755323 | Msa1247640:intron | 20.0% |
| !!! | TTATTTGAACAACCATTTTT+GGG | + | chr8_2:40755895-40755914 | Msa1247640:intron | 20.0% |
| !! | TTTCAATACCTATATTACTT+TGG | - | chr8_2:40755937-40755956 | None:intergenic | 20.0% |
| !! | AATATCATTTCTCTTATAAG+TGG | + | chr8_2:40756031-40756050 | Msa1247640:intron | 20.0% |
| !! | AAAAAAAGTAACATCATTGT+TGG | + | chr8_2:40755304-40755323 | Msa1247640:intron | 20.0% |
| !!! | TTATTTGAACAACCATTTTT+GGG | + | chr8_2:40755895-40755914 | Msa1247640:intron | 20.0% |
| !! | TTTCAATACCTATATTACTT+TGG | - | chr8_2:40755937-40755956 | None:intergenic | 20.0% |
| !! | AATATCATTTCTCTTATAAG+TGG | + | chr8_2:40756031-40756050 | Msa1247640:intron | 20.0% |
| ! | CTTTGATTCAGAAACATAAT+TGG | - | chr8_2:40755223-40755242 | None:intergenic | 25.0% |
| ! | TAAACATGAAAGTGAAGATT+CGG | + | chr8_2:40755562-40755581 | Msa1247640:intron | 25.0% |
| !! | GTTATTTGAACAACCATTTT+TGG | + | chr8_2:40755894-40755913 | Msa1247640:intron | 25.0% |
| !! | ATTTTCTTTCTGCAAAATGA+CGG | + | chr8_2:40756092-40756111 | Msa1247640:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr8_2:40756408-40756427 | Msa1247640:intron | 25.0% |
| !! | GTTTCTCTAATAGTTTTCTT+AGG | - | chr8_2:40756533-40756552 | None:intergenic | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | chr8_2:40756550-40756569 | Msa1247640:CDS | 25.0% |
| ! | CTTTGATTCAGAAACATAAT+TGG | - | chr8_2:40755223-40755242 | None:intergenic | 25.0% |
| ! | TAAACATGAAAGTGAAGATT+CGG | + | chr8_2:40755562-40755581 | Msa1247640:intron | 25.0% |
| !! | GTTATTTGAACAACCATTTT+TGG | + | chr8_2:40755894-40755913 | Msa1247640:intron | 25.0% |
| !! | ATTTTCTTTCTGCAAAATGA+CGG | + | chr8_2:40756092-40756111 | Msa1247640:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr8_2:40756408-40756427 | Msa1247640:intron | 25.0% |
| !! | GTTTCTCTAATAGTTTTCTT+AGG | - | chr8_2:40756533-40756552 | None:intergenic | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | chr8_2:40756550-40756569 | Msa1247640:CDS | 25.0% |
| ACAATCTATCTCATCTACTT+GGG | - | chr8_2:40755818-40755837 | None:intergenic | 30.0% | |
| AACAATCTATCTCATCTACT+TGG | - | chr8_2:40755819-40755838 | None:intergenic | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | - | chr8_2:40756404-40756423 | None:intergenic | 30.0% |
| GAAAATAGGCTTAGATGATT+TGG | + | chr8_2:40756422-40756441 | Msa1247640:intron | 30.0% | |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr8_2:40756555-40756574 | None:intergenic | 30.0% |
| GTTCTATCAAAGACCATATT+TGG | - | chr8_2:40756590-40756609 | None:intergenic | 30.0% | |
| TGGTCTTTGATAGAACATTA+TGG | + | chr8_2:40756594-40756613 | Msa1247640:CDS | 30.0% | |
| TCTTTGATAGAACATTATGG+CGG | + | chr8_2:40756597-40756616 | Msa1247640:CDS | 30.0% | |
| ACAATCTATCTCATCTACTT+GGG | - | chr8_2:40755818-40755837 | None:intergenic | 30.0% | |
| AACAATCTATCTCATCTACT+TGG | - | chr8_2:40755819-40755838 | None:intergenic | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | - | chr8_2:40756404-40756423 | None:intergenic | 30.0% |
| GAAAATAGGCTTAGATGATT+TGG | + | chr8_2:40756422-40756441 | Msa1247640:intron | 30.0% | |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr8_2:40756555-40756574 | None:intergenic | 30.0% |
| GTTCTATCAAAGACCATATT+TGG | - | chr8_2:40756590-40756609 | None:intergenic | 30.0% | |
| TGGTCTTTGATAGAACATTA+TGG | + | chr8_2:40756594-40756613 | Msa1247640:CDS | 30.0% | |
| TCTTTGATAGAACATTATGG+CGG | + | chr8_2:40756597-40756616 | Msa1247640:CDS | 30.0% | |
| GAGTGACAGAGAAAGAAAAA+CGG | - | chr8_2:40755196-40755215 | None:intergenic | 35.0% | |
| TGTGTGATTATTGTAAACCC+CGG | - | chr8_2:40755421-40755440 | None:intergenic | 35.0% | |
| ACTTCAATGATCTAGTCAGT+AGG | + | chr8_2:40755672-40755691 | Msa1247640:intron | 35.0% | |
| ! | AAAGTGTACCCATTTTCTGT+AGG | + | chr8_2:40755771-40755790 | Msa1247640:intron | 35.0% |
| ! | AAGTGTACCCATTTTCTGTA+GGG | + | chr8_2:40755772-40755791 | Msa1247640:intron | 35.0% |
| ACTATCACCCTACAGAAAAT+GGG | - | chr8_2:40755782-40755801 | None:intergenic | 35.0% | |
| ! | ATTTTCTGTAGGGTGATAGT+GGG | + | chr8_2:40755782-40755801 | Msa1247640:intron | 35.0% |
| CCTGTAAATTGTCCCAAAAA+TGG | - | chr8_2:40755910-40755929 | None:intergenic | 35.0% | |
| !!! | CCATTTTTGGGACAATTTAC+AGG | + | chr8_2:40755907-40755926 | Msa1247640:intron | 35.0% |
| CAGGACAACCAAAGTAATAT+AGG | + | chr8_2:40755926-40755945 | Msa1247640:intron | 35.0% | |
| GAGAGAGAGTTGTCTTAAAA+TGG | + | chr8_2:40756001-40756020 | Msa1247640:intron | 35.0% | |
| TACATCATCGTATTCAAGCT+GGG | + | chr8_2:40756132-40756151 | Msa1247640:intron | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | + | chr8_2:40756197-40756216 | Msa1247640:CDS | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | - | chr8_2:40756206-40756225 | None:intergenic | 35.0% | |
| AGCTGAAAGGAAAGTTCTAT+CGG | + | chr8_2:40756210-40756229 | Msa1247640:CDS | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | + | chr8_2:40756345-40756364 | Msa1247640:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | + | chr8_2:40756397-40756416 | Msa1247640:intron | 35.0% | |
| TTGATCTACTCTTCTTACCA+CGG | - | chr8_2:40756474-40756493 | None:intergenic | 35.0% | |
| GGTAAGAAGAGTAGATCAAA+TGG | + | chr8_2:40756475-40756494 | Msa1247640:CDS | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr8_2:40756478-40756497 | Msa1247640:CDS | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr8_2:40756562-40756581 | Msa1247640:CDS | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr8_2:40756574-40756593 | Msa1247640:CDS | 35.0% |
| GAGTGACAGAGAAAGAAAAA+CGG | - | chr8_2:40755196-40755215 | None:intergenic | 35.0% | |
| TGTGTGATTATTGTAAACCC+CGG | - | chr8_2:40755421-40755440 | None:intergenic | 35.0% | |
| ACTTCAATGATCTAGTCAGT+AGG | + | chr8_2:40755672-40755691 | Msa1247640:intron | 35.0% | |
| ! | AAAGTGTACCCATTTTCTGT+AGG | + | chr8_2:40755771-40755790 | Msa1247640:intron | 35.0% |
| ! | AAGTGTACCCATTTTCTGTA+GGG | + | chr8_2:40755772-40755791 | Msa1247640:intron | 35.0% |
| ACTATCACCCTACAGAAAAT+GGG | - | chr8_2:40755782-40755801 | None:intergenic | 35.0% | |
| ! | ATTTTCTGTAGGGTGATAGT+GGG | + | chr8_2:40755782-40755801 | Msa1247640:intron | 35.0% |
| CCTGTAAATTGTCCCAAAAA+TGG | - | chr8_2:40755910-40755929 | None:intergenic | 35.0% | |
| !!! | CCATTTTTGGGACAATTTAC+AGG | + | chr8_2:40755907-40755926 | Msa1247640:intron | 35.0% |
| CAGGACAACCAAAGTAATAT+AGG | + | chr8_2:40755926-40755945 | Msa1247640:intron | 35.0% | |
| GAGAGAGAGTTGTCTTAAAA+TGG | + | chr8_2:40756001-40756020 | Msa1247640:intron | 35.0% | |
| TACATCATCGTATTCAAGCT+GGG | + | chr8_2:40756132-40756151 | Msa1247640:intron | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | + | chr8_2:40756197-40756216 | Msa1247640:CDS | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | - | chr8_2:40756206-40756225 | None:intergenic | 35.0% | |
| AGCTGAAAGGAAAGTTCTAT+CGG | + | chr8_2:40756210-40756229 | Msa1247640:CDS | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | + | chr8_2:40756345-40756364 | Msa1247640:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | + | chr8_2:40756397-40756416 | Msa1247640:intron | 35.0% | |
| TTGATCTACTCTTCTTACCA+CGG | - | chr8_2:40756474-40756493 | None:intergenic | 35.0% | |
| GGTAAGAAGAGTAGATCAAA+TGG | + | chr8_2:40756475-40756494 | Msa1247640:CDS | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr8_2:40756478-40756497 | Msa1247640:CDS | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr8_2:40756562-40756581 | Msa1247640:CDS | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr8_2:40756574-40756593 | Msa1247640:CDS | 35.0% |
| TGACGATATCAGCAAGGATT+TGG | - | chr8_2:40755123-40755142 | None:intergenic | 40.0% | |
| AGAGAAAGAAAAACGGACCA+GGG | - | chr8_2:40755189-40755208 | None:intergenic | 40.0% | |
| ACATCTCCAATACACCATCA+TGG | - | chr8_2:40755469-40755488 | None:intergenic | 40.0% | |
| ACATGAAAGTGAAGATTCGG+TGG | + | chr8_2:40755565-40755584 | Msa1247640:intron | 40.0% | |
| TGGAAGACAATCCCAATCTA+CGG | + | chr8_2:40755602-40755621 | Msa1247640:CDS | 40.0% | |
| CACTATCACCCTACAGAAAA+TGG | - | chr8_2:40755783-40755802 | None:intergenic | 40.0% | |
| ! | CATTTTCTGTAGGGTGATAG+TGG | + | chr8_2:40755781-40755800 | Msa1247640:intron | 40.0% |
| TCTATCTCATCTACTTGGGT+TGG | - | chr8_2:40755814-40755833 | None:intergenic | 40.0% | |
| GTACATCATCGTATTCAAGC+TGG | + | chr8_2:40756131-40756150 | Msa1247640:intron | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr8_2:40756339-40756358 | Msa1247640:intron | 40.0% | |
| TGACATCATTAGAGAGAGAG+TGG | + | chr8_2:40756370-40756389 | Msa1247640:intron | 40.0% | |
| GACATCATTAGAGAGAGAGT+GGG | + | chr8_2:40756371-40756390 | Msa1247640:intron | 40.0% | |
| ACATCATTAGAGAGAGAGTG+GGG | + | chr8_2:40756372-40756391 | Msa1247640:intron | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | + | chr8_2:40756503-40756522 | Msa1247640:CDS | 40.0% | |
| TGACGATATCAGCAAGGATT+TGG | - | chr8_2:40755123-40755142 | None:intergenic | 40.0% | |
| AGAGAAAGAAAAACGGACCA+GGG | - | chr8_2:40755189-40755208 | None:intergenic | 40.0% | |
| ACATCTCCAATACACCATCA+TGG | - | chr8_2:40755469-40755488 | None:intergenic | 40.0% | |
| ACATGAAAGTGAAGATTCGG+TGG | + | chr8_2:40755565-40755584 | Msa1247640:intron | 40.0% | |
| TGGAAGACAATCCCAATCTA+CGG | + | chr8_2:40755602-40755621 | Msa1247640:CDS | 40.0% | |
| CACTATCACCCTACAGAAAA+TGG | - | chr8_2:40755783-40755802 | None:intergenic | 40.0% | |
| ! | CATTTTCTGTAGGGTGATAG+TGG | + | chr8_2:40755781-40755800 | Msa1247640:intron | 40.0% |
| TCTATCTCATCTACTTGGGT+TGG | - | chr8_2:40755814-40755833 | None:intergenic | 40.0% | |
| GTACATCATCGTATTCAAGC+TGG | + | chr8_2:40756131-40756150 | Msa1247640:intron | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr8_2:40756339-40756358 | Msa1247640:intron | 40.0% | |
| TGACATCATTAGAGAGAGAG+TGG | + | chr8_2:40756370-40756389 | Msa1247640:intron | 40.0% | |
| GACATCATTAGAGAGAGAGT+GGG | + | chr8_2:40756371-40756390 | Msa1247640:intron | 40.0% | |
| ACATCATTAGAGAGAGAGTG+GGG | + | chr8_2:40756372-40756391 | Msa1247640:intron | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | + | chr8_2:40756503-40756522 | Msa1247640:CDS | 40.0% | |
| ! | GGATTTGGCTTAACGAGTTG+CGG | - | chr8_2:40755108-40755127 | None:intergenic | 45.0% |
| CGAACTTGACGATATCAGCA+AGG | - | chr8_2:40755129-40755148 | None:intergenic | 45.0% | |
| CAGAGAAAGAAAAACGGACC+AGG | - | chr8_2:40755190-40755209 | None:intergenic | 45.0% | |
| ATTATTGTAAACCCCGGCTG+CGG | - | chr8_2:40755415-40755434 | None:intergenic | 45.0% | |
| ! | GCTAGACCATGATGGTGTAT+TGG | + | chr8_2:40755460-40755479 | Msa1247640:intron | 45.0% |
| AAGACAATCCCAATCTACGG+CGG | + | chr8_2:40755605-40755624 | Msa1247640:CDS | 45.0% | |
| TAGTCAGTAGGTGATTCGTG+TGG | + | chr8_2:40755684-40755703 | Msa1247640:intron | 45.0% | |
| AGTCAGTAGGTGATTCGTGT+GGG | + | chr8_2:40755685-40755704 | Msa1247640:intron | 45.0% | |
| !! | TGTAGGGTGATAGTGGGTTT+AGG | + | chr8_2:40755788-40755807 | Msa1247640:intron | 45.0% |
| ATCATCGTATTCAAGCTGGG+TGG | + | chr8_2:40756135-40756154 | Msa1247640:intron | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | + | chr8_2:40756144-40756163 | Msa1247640:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | chr8_2:40756158-40756177 | Msa1247640:CDS | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | - | chr8_2:40756177-40756196 | None:intergenic | 45.0% | |
| ACCGGCAATGTTGTATGGTA+CGG | + | chr8_2:40756244-40756263 | Msa1247640:CDS | 45.0% | |
| TCCGTACCATACAACATTGC+CGG | - | chr8_2:40756248-40756267 | None:intergenic | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | + | chr8_2:40756252-40756271 | Msa1247640:CDS | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | + | chr8_2:40756253-40756272 | Msa1247640:CDS | 45.0% |
| CGCTTACTTTACTCTCGTGT+TGG | - | chr8_2:40756289-40756308 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | + | chr8_2:40756292-40756311 | Msa1247640:CDS | 45.0% | |
| CATCATTAGAGAGAGAGTGG+GGG | + | chr8_2:40756373-40756392 | Msa1247640:intron | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | chr8_2:40756487-40756506 | Msa1247640:CDS | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | + | chr8_2:40756497-40756516 | Msa1247640:CDS | 45.0% | |
| ! | GGATTTGGCTTAACGAGTTG+CGG | - | chr8_2:40755108-40755127 | None:intergenic | 45.0% |
| CGAACTTGACGATATCAGCA+AGG | - | chr8_2:40755129-40755148 | None:intergenic | 45.0% | |
| CAGAGAAAGAAAAACGGACC+AGG | - | chr8_2:40755190-40755209 | None:intergenic | 45.0% | |
| ATTATTGTAAACCCCGGCTG+CGG | - | chr8_2:40755415-40755434 | None:intergenic | 45.0% | |
| ! | GCTAGACCATGATGGTGTAT+TGG | + | chr8_2:40755460-40755479 | Msa1247640:intron | 45.0% |
| AAGACAATCCCAATCTACGG+CGG | + | chr8_2:40755605-40755624 | Msa1247640:CDS | 45.0% | |
| TAGTCAGTAGGTGATTCGTG+TGG | + | chr8_2:40755684-40755703 | Msa1247640:intron | 45.0% | |
| AGTCAGTAGGTGATTCGTGT+GGG | + | chr8_2:40755685-40755704 | Msa1247640:intron | 45.0% | |
| !! | TGTAGGGTGATAGTGGGTTT+AGG | + | chr8_2:40755788-40755807 | Msa1247640:intron | 45.0% |
| ATCATCGTATTCAAGCTGGG+TGG | + | chr8_2:40756135-40756154 | Msa1247640:intron | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | + | chr8_2:40756144-40756163 | Msa1247640:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | chr8_2:40756158-40756177 | Msa1247640:CDS | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | - | chr8_2:40756177-40756196 | None:intergenic | 45.0% | |
| ACCGGCAATGTTGTATGGTA+CGG | + | chr8_2:40756244-40756263 | Msa1247640:CDS | 45.0% | |
| TCCGTACCATACAACATTGC+CGG | - | chr8_2:40756248-40756267 | None:intergenic | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | + | chr8_2:40756252-40756271 | Msa1247640:CDS | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | + | chr8_2:40756253-40756272 | Msa1247640:CDS | 45.0% |
| CGCTTACTTTACTCTCGTGT+TGG | - | chr8_2:40756289-40756308 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | + | chr8_2:40756292-40756311 | Msa1247640:CDS | 45.0% | |
| CATCATTAGAGAGAGAGTGG+GGG | + | chr8_2:40756373-40756392 | Msa1247640:intron | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | chr8_2:40756487-40756506 | Msa1247640:CDS | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | + | chr8_2:40756497-40756516 | Msa1247640:CDS | 45.0% | |
| GATATCGTCAAGTTCGCCGT+TGG | + | chr8_2:40755133-40755152 | Msa1247640:CDS | 50.0% | |
| ! | CGGACCAGGGATGATTTTGA+GGG | - | chr8_2:40755176-40755195 | None:intergenic | 50.0% |
| ! | ACGGACCAGGGATGATTTTG+AGG | - | chr8_2:40755177-40755196 | None:intergenic | 50.0% |
| TAGTAATCGCATTCCGCAGC+CGG | + | chr8_2:40755399-40755418 | Msa1247640:intron | 50.0% | |
| CAACTTGCGCTAGACCATGA+TGG | + | chr8_2:40755452-40755471 | Msa1247640:intron | 50.0% | |
| ! | ATTCGGTGGCTGCAAGAGAT+TGG | + | chr8_2:40755579-40755598 | Msa1247640:CDS | 50.0% |
| TAGCACTTCCGCCGTAGATT+GGG | - | chr8_2:40755616-40755635 | None:intergenic | 50.0% | |
| TTCGTGTGGGTAAGAGTGAG+AGG | + | chr8_2:40755698-40755717 | Msa1247640:intron | 50.0% | |
| GTCAGACCGGCAATGTTGTA+TGG | + | chr8_2:40756239-40756258 | Msa1247640:CDS | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | + | chr8_2:40756300-40756319 | Msa1247640:CDS | 50.0% |
| AGGATGTTGCGTTGGATGAG+TGG | + | chr8_2:40756320-40756339 | Msa1247640:CDS | 50.0% | |
| TCTTCTTACCACGGCGTCTA+CGG | - | chr8_2:40756465-40756484 | None:intergenic | 50.0% | |
| GATATCGTCAAGTTCGCCGT+TGG | + | chr8_2:40755133-40755152 | Msa1247640:CDS | 50.0% | |
| ! | CGGACCAGGGATGATTTTGA+GGG | - | chr8_2:40755176-40755195 | None:intergenic | 50.0% |
| ! | ACGGACCAGGGATGATTTTG+AGG | - | chr8_2:40755177-40755196 | None:intergenic | 50.0% |
| TAGTAATCGCATTCCGCAGC+CGG | + | chr8_2:40755399-40755418 | Msa1247640:intron | 50.0% | |
| CAACTTGCGCTAGACCATGA+TGG | + | chr8_2:40755452-40755471 | Msa1247640:intron | 50.0% | |
| ! | ATTCGGTGGCTGCAAGAGAT+TGG | + | chr8_2:40755579-40755598 | Msa1247640:CDS | 50.0% |
| TAGCACTTCCGCCGTAGATT+GGG | - | chr8_2:40755616-40755635 | None:intergenic | 50.0% | |
| TTCGTGTGGGTAAGAGTGAG+AGG | + | chr8_2:40755698-40755717 | Msa1247640:intron | 50.0% | |
| GTCAGACCGGCAATGTTGTA+TGG | + | chr8_2:40756239-40756258 | Msa1247640:CDS | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | + | chr8_2:40756300-40756319 | Msa1247640:CDS | 50.0% |
| AGGATGTTGCGTTGGATGAG+TGG | + | chr8_2:40756320-40756339 | Msa1247640:CDS | 50.0% | |
| TCTTCTTACCACGGCGTCTA+CGG | - | chr8_2:40756465-40756484 | None:intergenic | 50.0% | |
| TGAAACGTTTGACACGGCGG+TGG | - | chr8_2:40755083-40755102 | None:intergenic | 55.0% | |
| GCGTGAAACGTTTGACACGG+CGG | - | chr8_2:40755086-40755105 | None:intergenic | 55.0% | |
| GCGGCGTGAAACGTTTGACA+CGG | - | chr8_2:40755089-40755108 | None:intergenic | 55.0% | |
| !! | GATTTTGAGGGAGCCGTCGA+TGG | - | chr8_2:40755164-40755183 | None:intergenic | 55.0% |
| GGCTCCCTCAAAATCATCCC+TGG | + | chr8_2:40755169-40755188 | Msa1247640:CDS | 55.0% | |
| AGTAATCGCATTCCGCAGCC+GGG | + | chr8_2:40755400-40755419 | Msa1247640:intron | 55.0% | |
| GTAGCACTTCCGCCGTAGAT+TGG | - | chr8_2:40755617-40755636 | None:intergenic | 55.0% | |
| CTATCGGACAGCAGTCAGAC+CGG | + | chr8_2:40756226-40756245 | Msa1247640:CDS | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+CGG | + | chr8_2:40756256-40756275 | Msa1247640:CDS | 55.0% |
| CGGAGATGAGGATGTTGCGT+TGG | + | chr8_2:40756312-40756331 | Msa1247640:CDS | 55.0% | |
| CTTCTTACCACGGCGTCTAC+GGG | - | chr8_2:40756464-40756483 | None:intergenic | 55.0% | |
| TGAAACGTTTGACACGGCGG+TGG | - | chr8_2:40755083-40755102 | None:intergenic | 55.0% | |
| GCGTGAAACGTTTGACACGG+CGG | - | chr8_2:40755086-40755105 | None:intergenic | 55.0% | |
| GCGGCGTGAAACGTTTGACA+CGG | - | chr8_2:40755089-40755108 | None:intergenic | 55.0% | |
| !! | GATTTTGAGGGAGCCGTCGA+TGG | - | chr8_2:40755164-40755183 | None:intergenic | 55.0% |
| GGCTCCCTCAAAATCATCCC+TGG | + | chr8_2:40755169-40755188 | Msa1247640:CDS | 55.0% | |
| AGTAATCGCATTCCGCAGCC+GGG | + | chr8_2:40755400-40755419 | Msa1247640:intron | 55.0% | |
| GTAGCACTTCCGCCGTAGAT+TGG | - | chr8_2:40755617-40755636 | None:intergenic | 55.0% | |
| CTATCGGACAGCAGTCAGAC+CGG | + | chr8_2:40756226-40756245 | Msa1247640:CDS | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+CGG | + | chr8_2:40756256-40756275 | Msa1247640:CDS | 55.0% |
| CGGAGATGAGGATGTTGCGT+TGG | + | chr8_2:40756312-40756331 | Msa1247640:CDS | 55.0% | |
| CTTCTTACCACGGCGTCTAC+GGG | - | chr8_2:40756464-40756483 | None:intergenic | 55.0% | |
| TTTGAGGGAGCCGTCGATGG+CGG | - | chr8_2:40755161-40755180 | None:intergenic | 60.0% | |
| GTAATCGCATTCCGCAGCCG+GGG | + | chr8_2:40755401-40755420 | Msa1247640:intron | 60.0% | |
| CGGTGGCTGCAAGAGATTGG+TGG | + | chr8_2:40755582-40755601 | Msa1247640:CDS | 60.0% | |
| TGCTACCTTGCCCTGCCCAA+CGG | + | chr8_2:40755631-40755650 | Msa1247640:CDS | 60.0% | |
| TTTGAGGGAGCCGTCGATGG+CGG | - | chr8_2:40755161-40755180 | None:intergenic | 60.0% | |
| GTAATCGCATTCCGCAGCCG+GGG | + | chr8_2:40755401-40755420 | Msa1247640:intron | 60.0% | |
| CGGTGGCTGCAAGAGATTGG+TGG | + | chr8_2:40755582-40755601 | Msa1247640:CDS | 60.0% | |
| TGCTACCTTGCCCTGCCCAA+CGG | + | chr8_2:40755631-40755650 | Msa1247640:CDS | 60.0% | |
| TACCTTGCCCTGCCCAACGG+CGG | + | chr8_2:40755634-40755653 | Msa1247640:CDS | 65.0% | |
| TGCACTTACGCCCCGCCGTT+GGG | - | chr8_2:40755649-40755668 | None:intergenic | 65.0% | |
| ATGCACTTACGCCCCGCCGT+TGG | - | chr8_2:40755650-40755669 | None:intergenic | 65.0% | |
| GAGAAGACCCGTAGACGCCG+TGG | + | chr8_2:40756454-40756473 | Msa1247640:CDS | 65.0% | |
| TACCTTGCCCTGCCCAACGG+CGG | + | chr8_2:40755634-40755653 | Msa1247640:CDS | 65.0% | |
| TGCACTTACGCCCCGCCGTT+GGG | - | chr8_2:40755649-40755668 | None:intergenic | 65.0% | |
| ATGCACTTACGCCCCGCCGT+TGG | - | chr8_2:40755650-40755669 | None:intergenic | 65.0% | |
| GAGAAGACCCGTAGACGCCG+TGG | + | chr8_2:40756454-40756473 | Msa1247640:CDS | 65.0% | |
| !! | GCCGTTGGCTCCGCCATCGA+CGG | + | chr8_2:40755148-40755167 | Msa1247640:CDS | 70.0% |
| !! | GCCGTCGATGGCGGAGCCAA+CGG | - | chr8_2:40755152-40755171 | None:intergenic | 70.0% |
| ACCTTGCCCTGCCCAACGGC+GGG | + | chr8_2:40755635-40755654 | Msa1247640:CDS | 70.0% | |
| TTACGCCCCGCCGTTGGGCA+GGG | - | chr8_2:40755644-40755663 | None:intergenic | 70.0% | |
| !! | GCCGTTGGCTCCGCCATCGA+CGG | + | chr8_2:40755148-40755167 | Msa1247640:CDS | 70.0% |
| !! | GCCGTCGATGGCGGAGCCAA+CGG | - | chr8_2:40755152-40755171 | None:intergenic | 70.0% |
| ACCTTGCCCTGCCCAACGGC+GGG | + | chr8_2:40755635-40755654 | Msa1247640:CDS | 70.0% | |
| TTACGCCCCGCCGTTGGGCA+GGG | - | chr8_2:40755644-40755663 | None:intergenic | 70.0% | |
| CCTTGCCCTGCCCAACGGCG+GGG | + | chr8_2:40755636-40755655 | Msa1247640:CDS | 75.0% | |
| CTTACGCCCCGCCGTTGGGC+AGG | - | chr8_2:40755645-40755664 | None:intergenic | 75.0% | |
| CCTTGCCCTGCCCAACGGCG+GGG | + | chr8_2:40755636-40755655 | Msa1247640:CDS | 75.0% | |
| CTTACGCCCCGCCGTTGGGC+AGG | - | chr8_2:40755645-40755664 | None:intergenic | 75.0% | |
| ! | CCCCGCCGTTGGGCAGGGCA+AGG | - | chr8_2:40755639-40755658 | None:intergenic | 80.0% |
| ! | CCCCGCCGTTGGGCAGGGCA+AGG | - | chr8_2:40755639-40755658 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 40755076 | 40756649 | 40755076 | ID=Msa1247640;Name=Msa1247640 |
| chr8_2 | mRNA | 40755076 | 40756649 | 40755076 | ID=Msa1247640-mRNA-1;Parent=Msa1247640;Name=Msa1247640-mRNA-1;_AED=0.85;_eAED=0.86;_QI=0|0|0|0.25|1|1|4|0|207 |
| chr8_2 | exon | 40755076 | 40755194 | 40755076 | ID=Msa1247640-mRNA-1:exon:12437;Parent=Msa1247640-mRNA-1 |
| chr8_2 | exon | 40755574 | 40755689 | 40755574 | ID=Msa1247640-mRNA-1:exon:12438;Parent=Msa1247640-mRNA-1 |
| chr8_2 | exon | 40756150 | 40756341 | 40756150 | ID=Msa1247640-mRNA-1:exon:12439;Parent=Msa1247640-mRNA-1 |
| chr8_2 | exon | 40756453 | 40756649 | 40756453 | ID=Msa1247640-mRNA-1:exon:12440;Parent=Msa1247640-mRNA-1 |
| chr8_2 | CDS | 40755076 | 40755194 | 40755076 | ID=Msa1247640-mRNA-1:cds;Parent=Msa1247640-mRNA-1 |
| chr8_2 | CDS | 40755574 | 40755689 | 40755574 | ID=Msa1247640-mRNA-1:cds;Parent=Msa1247640-mRNA-1 |
| chr8_2 | CDS | 40756150 | 40756341 | 40756150 | ID=Msa1247640-mRNA-1:cds;Parent=Msa1247640-mRNA-1 |
| chr8_2 | CDS | 40756453 | 40756649 | 40756453 | ID=Msa1247640-mRNA-1:cds;Parent=Msa1247640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
