AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610840 MtrunA17_Chr4g0043911 98.930 561 3 1 1 558 1 561 0.0 1147
Msa0610840 MtrunA17_Chr1g0160781 81.939 526 87 2 25 547 29 549 0.0 905
Msa0610840 MtrunA17_Chr3g0077321 57.708 506 203 4 51 545 40 545 0.0 627
Msa0610840 MtrunA17_Chr5g0424241 56.680 494 199 5 64 544 68 559 0.0 586
Msa0610840 MtrunA17_Chr3g0123521 42.500 440 229 13 124 546 117 549 4.23e-112 344
Msa0610840 MtrunA17_Chr2g0284071 40.517 464 228 13 124 545 184 641 3.46e-106 332
Msa0610840 MtrunA17_Chr4g0056061 38.664 494 268 15 68 551 28 496 4.16e-102 318
Msa0610840 MtrunA17_Chr5g0399311 41.274 424 223 11 132 551 111 512 3.40e-101 315
Msa0610840 MtrunA17_Chr3g0132951 37.555 458 248 12 119 546 68 517 2.05e-97 305
Msa0610840 MtrunA17_Chr5g0412251 37.021 470 258 13 106 545 41 502 2.47e-94 297
Msa0610840 MtrunA17_Chr5g0426591 39.326 445 229 11 126 546 86 513 3.35e-93 295
Msa0610840 MtrunA17_Chr5g0448581 41.058 397 212 9 153 545 122 500 3.60e-93 296
Msa0610840 MtrunA17_Chr3g0143821 37.748 453 252 11 67 509 26 458 4.48e-93 296
Msa0610840 MtrunA17_Chr3g0132371 34.326 571 299 18 19 545 1 539 2.72e-87 280
Msa0610840 MtrunA17_Chr4g0075311 37.961 461 241 12 126 546 138 593 7.33e-84 272
Msa0610840 MtrunA17_Chr3g0129981 37.387 444 232 14 126 544 89 511 1.20e-83 270
Msa0610840 MtrunA17_Chr4g0070551 36.865 453 241 16 118 549 194 622 6.90e-83 271
Msa0610840 MtrunA17_Chr4g0008451 35.747 442 243 14 122 544 202 621 4.57e-80 264
Msa0610840 MtrunA17_Chr5g0436321 36.893 412 223 11 150 545 161 551 4.47e-79 259
Msa0610840 MtrunA17_Chr4g0042711 34.856 416 241 11 150 551 97 496 5.90e-78 254
Msa0610840 MtrunA17_Chr2g0307971 35.142 424 243 10 149 557 114 520 9.98e-77 251
Msa0610840 MtrunA17_Chr6g0455571 35.523 411 232 11 149 543 114 507 2.48e-76 250
Msa0610840 MtrunA17_Chr4g0061781 35.904 415 233 11 149 547 115 512 8.41e-76 249
Msa0610840 MtrunA17_Chr5g0417871 33.898 413 247 11 150 550 85 483 3.05e-74 244
Msa0610840 MtrunA17_Chr1g0204121 35.088 456 250 15 117 547 43 477 5.00e-73 241
Msa0610840 MtrunA17_Chr1g0204141 35.435 460 246 16 117 547 43 480 1.37e-72 240
Msa0610840 MtrunA17_Chr3g0087291 33.333 435 257 11 124 544 141 556 1.65e-66 226
Msa0610840 MtrunA17_Chr4g0010511 33.333 438 259 10 127 550 204 622 1.28e-65 224
Msa0610840 MtrunA17_Chr4g0003561 32.124 386 219 15 126 498 48 403 5.74e-45 164
Msa0610840 MtrunA17_Chr1g0146501 28.571 420 241 11 44 440 2 385 6.52e-36 142
Msa0610840 MtrunA17_Chr3g0127811 32.075 318 195 6 130 438 38 343 3.77e-34 135
Msa0610840 MtrunA17_Chr7g0220381 27.632 304 195 8 149 437 97 390 3.15e-30 125
Msa0610840 MtrunA17_Chr7g0240241 34.074 135 73 4 318 446 6 130 3.11e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610840 AT2G01480.1 79.354 557 111 2 2 554 5 561 0.0 938
Msa0610840 AT1G14970.1 73.381 556 139 2 2 554 13 562 0.0 860
Msa0610840 AT2G01480.2 79.371 509 101 2 2 506 5 513 0.0 855
Msa0610840 AT1G14970.2 79.310 435 87 1 123 554 8 442 0.0 744
Msa0610840 AT1G14970.3 79.759 415 81 1 143 554 2 416 0.0 711
Msa0610840 AT1G35510.1 55.410 536 220 7 23 545 28 557 0.0 610
Msa0610840 AT1G38131.1 54.545 495 203 4 68 544 67 557 0.0 561
Msa0610840 AT1G38065.2 57.512 426 163 3 137 544 3 428 0.0 520
Msa0610840 AT1G38065.1 58.680 409 161 2 144 544 30 438 8.28e-180 515
Msa0610840 AT3G26370.1 42.792 437 226 12 127 546 128 557 3.38e-113 348
Msa0610840 AT4G16650.2 36.822 535 287 17 35 555 17 514 3.95e-96 303
Msa0610840 AT4G16650.1 36.822 535 287 17 35 555 17 514 3.95e-96 303
Msa0610840 AT5G65470.1 38.411 453 239 13 124 544 58 502 2.51e-95 300
Msa0610840 AT4G38390.1 40.199 403 221 8 149 547 122 508 2.88e-95 301
Msa0610840 AT4G24530.1 36.152 473 263 14 103 545 54 517 1.01e-94 299
Msa0610840 AT1G29200.4 38.742 493 254 16 97 545 6 494 6.67e-94 296
Msa0610840 AT1G29200.1 38.742 493 254 16 97 545 6 494 6.67e-94 296
Msa0610840 AT1G29200.2 39.735 453 230 13 132 545 162 610 1.75e-92 296
Msa0610840 AT1G62330.1 37.365 463 244 12 126 547 195 652 2.21e-92 296
Msa0610840 AT1G76270.1 38.928 429 232 11 126 544 78 486 2.49e-91 291
Msa0610840 AT1G20550.1 38.084 428 237 10 126 544 81 489 8.60e-90 287
Msa0610840 AT1G11990.1 38.444 437 243 14 126 546 164 590 9.85e-88 283
Msa0610840 AT1G29200.3 39.953 423 217 11 156 545 2 420 1.55e-87 277
Msa0610840 AT1G22460.1 37.613 444 233 12 126 545 135 558 1.93e-87 281
Msa0610840 AT5G01100.1 35.805 472 257 15 98 544 158 608 1.87e-85 278
Msa0610840 AT1G11990.2 35.537 484 250 15 119 546 135 612 3.21e-83 271
Msa0610840 AT5G64600.1 36.830 448 233 14 124 544 90 514 4.71e-83 268
Msa0610840 AT3G54100.1 35.841 452 253 15 123 557 193 624 6.83e-82 269
Msa0610840 AT2G37980.1 36.508 441 239 15 123 544 197 615 7.27e-82 268
Msa0610840 AT1G04910.1 36.585 451 260 13 107 547 43 477 1.41e-80 262
Msa0610840 AT5G35570.1 35.604 455 246 16 112 544 211 640 3.61e-79 262
Msa0610840 AT1G14020.1 35.084 419 236 11 150 551 91 490 3.44e-76 250
Msa0610840 AT5G15740.1 35.854 410 230 11 150 543 106 498 9.57e-75 246
Msa0610840 AT3G02250.1 36.872 358 205 7 149 500 105 447 8.95e-74 244
Msa0610840 AT2G03280.1 36.856 369 208 8 150 509 88 440 2.25e-71 237
Msa0610840 AT2G44500.1 33.708 445 263 10 126 556 147 573 2.30e-70 236
Msa0610840 AT2G03280.2 34.596 396 207 8 150 509 88 467 8.00e-68 228
Msa0610840 AT5G63390.1 32.727 440 264 12 120 545 128 549 2.95e-66 225
Msa0610840 AT3G07900.1 32.438 447 270 10 117 549 149 577 1.42e-62 216
Msa0610840 AT3G26370.2 42.570 249 126 8 127 361 128 373 6.85e-58 198
Msa0610840 AT1G52630.1 30.978 368 213 13 124 479 45 383 2.89e-40 152
Msa0610840 AT3G03810.2 31.609 348 217 8 108 440 43 384 1.25e-37 147
Msa0610840 AT3G03810.1 31.609 348 217 8 108 440 43 384 1.25e-37 147
Msa0610840 AT2G44500.2 34.191 272 154 7 126 386 147 404 9.21e-36 139
Msa0610840 AT3G30300.2 28.947 304 191 8 150 438 100 393 6.34e-33 134
Msa0610840 AT3G30300.1 28.947 304 191 8 150 438 100 393 6.34e-33 134
Msa0610840 AT1G52630.2 28.882 322 193 10 166 479 2 295 1.61e-30 122
Msa0610840 AT3G21190.1 25.217 345 206 9 144 480 84 384 1.28e-18 89.0
Msa0610840 AT1G51630.1 23.580 352 216 10 135 477 75 382 1.41e-18 88.6

Find 196 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCGGTATGCTTCTTTATA+TGG 0.109099 4_2:-58741532 Msa0610840:CDS
AAGAGGAACTTTCTACATTT+AGG 0.164218 4_2:-58736932 Msa0610840:CDS
TGACAAATGTTCACAATTTC+AGG 0.196692 4_2:-58738603 Msa0610840:CDS
TTCTGTGGCCCAGCAGAAAA+TGG 0.227977 4_2:+58736737 None:intergenic
AATGATACATTACCCTATAT+TGG 0.252586 4_2:+58736642 None:intergenic
ACATAGCTCACTCAATGTTT+TGG 0.259450 4_2:+58736091 None:intergenic
AATGCTAACTTCCGCTTATC+AGG 0.262820 4_2:+58736679 None:intergenic
TTCCATTCACCACCTCTATA+TGG 0.264650 4_2:+58739998 None:intergenic
GCTTTATTCTAATCTGAAAA+AGG 0.270843 4_2:-58741436 Msa0610840:CDS
CTCTTTGATAATCCCAATAT+AGG 0.275521 4_2:-58736655 Msa0610840:CDS
CCGCCTTGGACCGCCCTTGC+CGG 0.276203 4_2:+58741676 None:intergenic
AGAGAGCGTAGTGCCGTTAA+TGG 0.286345 4_2:-58737610 Msa0610840:CDS
TTTGACCATAGGTGAATCTT+TGG 0.291990 4_2:-58737644 Msa0610840:CDS
AGAGGAACTTTCTACATTTA+GGG 0.292975 4_2:-58736931 Msa0610840:intron
TCTGTACATTAACAAAATTC+AGG 0.296364 4_2:-58735933 Msa0610840:three_prime_UTR
GTCTCCTTCGTATGCAAATT+AGG 0.298986 4_2:+58736966 None:intergenic
ACTTCCATTATCATAGTATA+TGG 0.303169 4_2:-58738906 Msa0610840:CDS
AATGGAAAATGTTCCTTTGC+AGG 0.308996 4_2:-58736122 Msa0610840:three_prime_UTR
CTTGCCGGAGGCGCGGCGAC+CGG 0.312151 4_2:+58741691 None:intergenic
CGGTCGCCGCGCCTCCGGCA+AGG 0.329807 4_2:-58741690 Msa0610840:CDS
TAGCAAATTACGAGGCTTTA+CGG 0.331573 4_2:-58737681 Msa0610840:CDS
TGTTCTAGAATTATTCTTCC+AGG 0.334104 4_2:-58736831 Msa0610840:intron
TCTTTCAGATATCTACAATA+TGG 0.334839 4_2:-58740027 Msa0610840:intron
ATGATACATTACCCTATATT+GGG 0.343882 4_2:+58736643 None:intergenic
CTCCAGTTGTCCAGCGCCTC+AGG 0.347072 4_2:-58737708 Msa0610840:CDS
CTTTCCATATACTATGATAA+TGG 0.356710 4_2:+58738902 None:intergenic
ATACTATGATAATGGAAGTT+TGG 0.357971 4_2:+58738910 None:intergenic
GGCCTGATGCTGAGGGGAAT+GGG 0.359232 4_2:-58737074 Msa0610840:CDS
AACATATTTACCGCCATTAA+CGG 0.366273 4_2:+58737597 None:intergenic
CACCTGAGGCGCTGGACAAC+TGG 0.366436 4_2:+58737706 None:intergenic
TCTTTGATAATCCCAATATA+GGG 0.370622 4_2:-58736654 Msa0610840:intron
CGGCAAGGGCGGTCCAAGGC+GGG 0.375456 4_2:-58741675 Msa0610840:CDS
TGGCCTGATGCTGAGGGGAA+TGG 0.376541 4_2:-58737075 Msa0610840:CDS
TGCAATGCCGTTGCTGTGGC+TGG 0.378237 4_2:-58738958 Msa0610840:CDS
GATTCACCTATGGTCAAAAT+AGG 0.383591 4_2:+58737649 None:intergenic
AGCAAAATTTCTCAATTGCT+TGG 0.386006 4_2:+58735707 None:intergenic
ATCTACTCACGTAATTTGAT+TGG 0.386690 4_2:-58736334 Msa0610840:three_prime_UTR
CGCTCCGGTCGCCGCGCCTC+CGG 0.401305 4_2:-58741695 Msa0610840:CDS
GCTGAGTTGGATGCTGCTTT+CGG 0.403095 4_2:-58741604 Msa0610840:CDS
GCCGGTATGCTTCTTTATAT+GGG 0.404874 4_2:-58741531 Msa0610840:CDS
TTGGCACGGCACATACATTC+TGG 0.406203 4_2:+58736393 None:intergenic
GGTCGCCGCGCCTCCGGCAA+GGG 0.413658 4_2:-58741689 Msa0610840:CDS
TGGAAATAGCCAAGAGGAAC+TGG 0.419509 4_2:-58735652 Msa0610840:three_prime_UTR
AATGCCCGCTGCTCGGTAGC+CGG 0.423216 4_2:+58741742 None:intergenic
CAAAATACGAAACTGATAAC+AGG 0.427469 4_2:+58735855 None:intergenic
TGTTCACAATTTCAGGATCA+AGG 0.427509 4_2:-58738596 Msa0610840:CDS
TCTGTGGCCCAGCAGAAAAT+GGG 0.435357 4_2:+58736738 None:intergenic
AACCCATTCCCCTCAGCATC+AGG 0.438857 4_2:+58737072 None:intergenic
TCTTCACCCTCCGGTGGAGG+AGG 0.440937 4_2:-58741645 Msa0610840:CDS
AGTATGATATTCATGTGTTA+AGG 0.442114 4_2:-58735973 Msa0610840:three_prime_UTR
AGGCATGCTCACAAAATCAT+AGG 0.450707 4_2:+58736300 None:intergenic
GCAGGACGGTGTTTAATAAT+CGG 0.452957 4_2:+58741486 None:intergenic
CGGTGCTTCTCCGGCGACAA+GGG 0.453681 4_2:-58741584 Msa0610840:CDS
TTGCTAAGCACCTGAGGCGC+TGG 0.454996 4_2:+58737698 None:intergenic
CTGGAGCAATCAGGATCAAC+GGG 0.458461 4_2:-58737313 Msa0610840:CDS
TTCAGGTTGGCCTGATGCTG+AGG 0.462435 4_2:-58737082 Msa0610840:intron
TGAAGAAAATTTCCCCGCCT+TGG 0.465495 4_2:+58741662 None:intergenic
ATTAAACACCGTCCTGCTCC+TGG 0.468289 4_2:-58741480 Msa0610840:CDS
AAAGGGAAATTTACAAAGCC+TGG 0.469236 4_2:-58737350 Msa0610840:CDS
CCGTTGATCCTGATTGCTCC+AGG 0.470975 4_2:+58737314 None:intergenic
TGCTGCCAAATCTTTCCATC+AGG 0.471344 4_2:+58738629 None:intergenic
CCCCTTCCCATTCGGTGAGA+AGG 0.474371 4_2:-58736234 Msa0610840:three_prime_UTR
GTTTAGCGCAGAGGCTGAGT+TGG 0.475791 4_2:-58741617 Msa0610840:CDS
TGCACCGGCTACCGAGCAGC+GGG 0.476872 4_2:-58741746 Msa0610840:CDS
TCAGGTTGGCCTGATGCTGA+GGG 0.482463 4_2:-58737081 Msa0610840:intron
GAGTACCTGATGGAAAGATT+TGG 0.483424 4_2:-58738634 Msa0610840:CDS
TCTTTCTGTGTGTATCAAAA+CGG 0.484274 4_2:+58741823 None:intergenic
GGCGTCGAATGCCCGCTGCT+CGG 0.491324 4_2:+58741735 None:intergenic
GTAATCTATAGCAGCCATCC+TGG 0.491391 4_2:+58736813 None:intergenic
TGCTGCTTTCGGTGCTTCTC+CGG 0.491965 4_2:-58741593 Msa0610840:CDS
AGGAATTGGATCAAATATCA+AGG 0.493243 4_2:-58736186 Msa0610840:three_prime_UTR
TTGCTCCAGGACGTATGATT+CGG 0.493631 4_2:+58737327 None:intergenic
TACATATATGTAGAGGCTAA+TGG 0.494144 4_2:-58739105 Msa0610840:CDS
TTTGCATACGAAGGAGACTC+TGG 0.497099 4_2:-58736961 Msa0610840:CDS
TTAGGAAACATTTGTAGTAG+TGG 0.498241 4_2:+58736984 None:intergenic
CTTCACCCTCCGGTGGAGGA+GGG 0.498330 4_2:-58741644 Msa0610840:CDS
GTCCATATAGAGGTGGTGAA+TGG 0.499927 4_2:-58740000 Msa0610840:CDS
ATGATTGCTGCAAGAGAAAG+AGG 0.500394 4_2:-58737377 Msa0610840:CDS
CCGGCAAGGGCGGTCCAAGG+CGG 0.501162 4_2:-58741676 Msa0610840:CDS
TCATACGTCCTGGAGCAATC+AGG 0.501976 4_2:-58737322 Msa0610840:CDS
ATAGTATATGGAAAGATCCT+AGG 0.502813 4_2:-58738894 Msa0610840:intron
GCCTTCTCACCGAATGGGAA+GGG 0.503749 4_2:+58736233 None:intergenic
AAGGACAATCTATTCGCAAA+AGG 0.504698 4_2:+58737739 None:intergenic
TCGGTGCTTCTCCGGCGACA+AGG 0.506944 4_2:-58741585 Msa0610840:CDS
CGTAATTTGCTAAGCACCTG+AGG 0.507845 4_2:+58737692 None:intergenic
GAAGAAACAGAGTTTAAGAG+TGG 0.507980 4_2:-58735672 Msa0610840:three_prime_UTR
CACATCTCTATAATACTGAA+TGG 0.508393 4_2:+58738564 None:intergenic
CGGAGGCGCGGCGACCGGAG+CGG 0.510117 4_2:+58741696 None:intergenic
ATAGGTCTACCTGAGTCAAA+TGG 0.510356 4_2:-58739129 Msa0610840:intron
CACTGTTTGTCTTCGTAGTG+AGG 0.511593 4_2:-58736791 Msa0610840:CDS
CGCCGCGCCTCCGGCAAGGG+CGG 0.512409 4_2:-58741686 Msa0610840:CDS
TAAACTCCTCCCTCCTCCAC+CGG 0.512809 4_2:+58741635 None:intergenic
CTGTACATTAACAAAATTCA+GGG 0.514179 4_2:-58735932 Msa0610840:three_prime_UTR
CCTCCGGCAAGGGCGGTCCA+AGG 0.516352 4_2:-58741679 Msa0610840:CDS
TTCAACCAAAGATTCACCTA+TGG 0.516389 4_2:+58737639 None:intergenic
CCTAAAACAGACCAAGAAAA+CGG 0.521570 4_2:+58735899 None:intergenic
AAGGAGATAATAACCTCTAG+TGG 0.521847 4_2:+58737275 None:intergenic
GACCGCCCTTGCCGGAGGCG+CGG 0.523444 4_2:+58741684 None:intergenic
CGATAAAGCGAGCCAGGAGC+AGG 0.527327 4_2:+58741468 None:intergenic
GGCAAGGGCGGTCCAAGGCG+GGG 0.527384 4_2:-58741674 Msa0610840:CDS
CCTTCTCACCGAATGGGAAG+GGG 0.529704 4_2:+58736234 None:intergenic
AATAACCTCTAGTGGGGTGA+GGG 0.529991 4_2:+58737283 None:intergenic
CCTGGCCGAATCATACGTCC+TGG 0.536052 4_2:-58737332 Msa0610840:CDS
GGACTACGATAAAGCGAGCC+AGG 0.537123 4_2:+58741462 None:intergenic
GGGTATGCCTTCTCACCGAA+TGG 0.540107 4_2:+58736227 None:intergenic
CATCTCCGCAATCTCCGCTC+CGG 0.541458 4_2:-58741710 Msa0610840:CDS
CACCCTCCGGTGGAGGAGGG+AGG 0.541793 4_2:-58741641 Msa0610840:CDS
CCAGGACGTATGATTCGGCC+AGG 0.542297 4_2:+58737332 None:intergenic
TGCCTTCTCACCGAATGGGA+AGG 0.542561 4_2:+58736232 None:intergenic
AACGAGCTATTTAGAGTCAA+AGG 0.543106 4_2:-58736038 Msa0610840:three_prime_UTR
GACAACTGGAGGAGCATCAA+AGG 0.544084 4_2:+58737720 None:intergenic
GACCAAGAAAACGGTATGGC+AGG 0.544400 4_2:+58735908 None:intergenic
GGCGACCGGAGCGGAGATTG+CGG 0.547340 4_2:+58741705 None:intergenic
CTAGAATTATTCTTCCAGGA+TGG 0.547657 4_2:-58736827 Msa0610840:intron
AGCGGAGATTGCGGAGATGA+CGG 0.547840 4_2:+58741714 None:intergenic
AAAACGACGAAGATGAAGAA+AGG 0.548449 4_2:+58741858 None:intergenic
ATCGTTGATCTGAAATGCAC+CGG 0.553993 4_2:-58741761 Msa0610840:exon
GAGGTCACACAGTGATTCCA+AGG 0.555464 4_2:-58736463 Msa0610840:CDS
ACTCCTCCCTCCTCCACCGG+AGG 0.555622 4_2:+58741638 None:intergenic
GGCCACAGAAGATACTTGTA+TGG 0.556259 4_2:-58736724 Msa0610840:CDS
CCTTGGACCGCCCTTGCCGG+AGG 0.556532 4_2:+58741679 None:intergenic
AATCTTTCCATCAGGTACTC+AGG 0.556689 4_2:+58738637 None:intergenic
TTTGGGAGAGATTCCTGCAA+AGG 0.557042 4_2:+58736109 None:intergenic
TTGCTGCAAGAGAAAGAGGT+TGG 0.559046 4_2:-58737373 Msa0610840:CDS
CTTCTCACCGAATGGGAAGG+GGG 0.561019 4_2:+58736235 None:intergenic
ATGGGGAAAGTTACCACCCT+GGG 0.561543 4_2:+58736756 None:intergenic
CAAGATTCCTGAGTACCTGA+TGG 0.564832 4_2:-58738644 Msa0610840:CDS
GGAGACTCTGGCTTCTGAAG+AGG 0.565018 4_2:-58736949 Msa0610840:CDS
TAATAACCTCTAGTGGGGTG+AGG 0.566360 4_2:+58737282 None:intergenic
CAAGAGAAAGAGGTTGGAAA+GGG 0.566845 4_2:-58737367 Msa0610840:CDS
GGTATGCCTTCTCACCGAAT+GGG 0.567059 4_2:+58736228 None:intergenic
TATGCTTCTTTATATGGGAA+CGG 0.567706 4_2:-58741526 Msa0610840:CDS
TGGATCAAATATCAAGGGAG+TGG 0.568808 4_2:-58736180 Msa0610840:three_prime_UTR
AGGAGATAATAACCTCTAGT+GGG 0.569111 4_2:+58737276 None:intergenic
GTTTCCTAATTTGCATACGA+AGG 0.569455 4_2:-58736970 Msa0610840:CDS
TGAGGTGTTCGTCACAACCC+AGG 0.569588 4_2:-58736773 Msa0610840:CDS
AAGCTGTATATAGAGTCGTT+TGG 0.569614 4_2:+58736423 None:intergenic
TCATACTTCACATAATGTAC+AGG 0.570596 4_2:+58735989 None:intergenic
AATGTACAGGCAGGTTGTGA+AGG 0.576376 4_2:+58736002 None:intergenic
CGGCACATACATTCTGGACA+TGG 0.576592 4_2:+58736399 None:intergenic
GATGCCAATTCAGAACAGAA+TGG 0.577445 4_2:-58736140 Msa0610840:three_prime_UTR
GCAAGAGAAAGAGGTTGGAA+AGG 0.580707 4_2:-58737368 Msa0610840:CDS
AATCGTCGGTTCTATTGGCA+CGG 0.582762 4_2:+58736379 None:intergenic
GAGGTGTTCGTCACAACCCA+GGG 0.585782 4_2:-58736772 Msa0610840:CDS
CTGAGGCGCTGGACAACTGG+AGG 0.587571 4_2:+58737709 None:intergenic
CCTGGAGCAATCAGGATCAA+CGG 0.587903 4_2:-58737314 Msa0610840:CDS
GGAATTGGATCAAATATCAA+GGG 0.590972 4_2:-58736185 Msa0610840:three_prime_UTR
TTCAGATTAGAATAAAGCTG+AGG 0.595196 4_2:+58741441 None:intergenic
AGCGTCAACTGCTGAACATG+AGG 0.596425 4_2:-58736482 Msa0610840:CDS
ATATGGAGAAGTCCATATAG+AGG 0.598207 4_2:-58740010 Msa0610840:CDS
CAGAAATGCACTCAGTGGCA+AGG 0.599401 4_2:+58736280 None:intergenic
TCCCATATAAAGAAGCATAC+CGG 0.599861 4_2:+58741530 None:intergenic
ATGCACCGGCTACCGAGCAG+CGG 0.600065 4_2:-58741747 Msa0610840:CDS
AACAGACCAAGAAAACGGTA+TGG 0.602079 4_2:+58735904 None:intergenic
ACTTCACATAATGTACAGGC+AGG 0.605489 4_2:+58735993 None:intergenic
GAATAGTGAAATAGTTACAC+TGG 0.605520 4_2:+58735733 None:intergenic
TATATGTATCCATTTGACTC+AGG 0.606438 4_2:+58739120 None:intergenic
TTCTCACCGAATGGGAAGGG+GGG 0.606650 4_2:+58736236 None:intergenic
CAACTAGACCCTCAATGTGA+AGG 0.608967 4_2:+58735828 None:intergenic
ACAATTTCAGGATCAAGGCA+TGG 0.613833 4_2:-58738591 Msa0610840:CDS
GGCAAAGAAACAAACCGCAT+CGG 0.616739 4_2:+58741389 None:intergenic
CTCCTCCCTCCTCCACCGGA+GGG 0.617309 4_2:+58741639 None:intergenic
GCTCCGTTGATTTATATCGC+CGG 0.620961 4_2:-58741549 Msa0610840:CDS
CTGTGGCCCAGCAGAAAATG+GGG 0.623681 4_2:+58736739 None:intergenic
ATAACCTCTAGTGGGGTGAG+GGG 0.627238 4_2:+58737284 None:intergenic
CAGGTTGGCCTGATGCTGAG+GGG 0.634157 4_2:-58737080 Msa0610840:CDS
TAGATAGCCAGCCACAGCAA+CGG 0.638707 4_2:+58738951 None:intergenic
AAATGGATACATATATGTAG+AGG 0.639855 4_2:-58739112 Msa0610840:CDS
ATATAATGCTGAGAAAACAA+TGG 0.641862 4_2:-58737009 Msa0610840:CDS
AGACAATTAAGCCTGATAAG+CGG 0.644283 4_2:-58736690 Msa0610840:CDS
CTTAAATCAGCAAAGGACAT+CGG 0.644691 4_2:-58739079 Msa0610840:intron
AATGGAAGTTTGGAATCACA+AGG 0.644732 4_2:+58738920 None:intergenic
ATGGTGGCTTAAATCAGCAA+AGG 0.645601 4_2:-58739086 Msa0610840:CDS
TGTGTAAATAGATCTTCAGA+AGG 0.646000 4_2:-58739971 Msa0610840:intron
CACCATACAAGTATCTTCTG+TGG 0.650588 4_2:+58736722 None:intergenic
GAGCGTAGTGCCGTTAATGG+CGG 0.653129 4_2:-58737607 Msa0610840:CDS
CATTCAGTATTATAGAGATG+TGG 0.653828 4_2:-58738563 Msa0610840:CDS
GGATAACTCTTCTACCGATG+CGG 0.654560 4_2:-58741403 Msa0610840:intron
TCTGAAGATCTATTTACACA+TGG 0.658128 4_2:+58739974 None:intergenic
AAAGCGAGCCAGGAGCAGGA+CGG 0.659359 4_2:+58741472 None:intergenic
CACAGAAGATACTTGTATGG+TGG 0.660172 4_2:-58736721 Msa0610840:CDS
GTGTCCCCTCACCCCACTAG+AGG 0.664674 4_2:-58737288 Msa0610840:intron
GGTATGCAATGCCGTTGCTG+TGG 0.666009 4_2:-58738962 Msa0610840:CDS
TGGAGAAGTCCATATAGAGG+TGG 0.670438 4_2:-58740007 Msa0610840:CDS
GGAGATAATAACCTCTAGTG+GGG 0.676659 4_2:+58737277 None:intergenic
GAGGGAGGAGTTTAGCGCAG+AGG 0.682139 4_2:-58741626 Msa0610840:CDS
CAGGTGCTTAGCAAATTACG+AGG 0.687343 4_2:-58737689 Msa0610840:CDS
ATATATGTAGAGGCTAATGG+TGG 0.688262 4_2:-58739102 Msa0610840:CDS
AGGTCACACAGTGATTCCAA+GGG 0.690772 4_2:-58736462 Msa0610840:CDS
AATGGGGAAAGTTACCACCC+TGG 0.694185 4_2:+58736755 None:intergenic
TAAGAGTGGAAATAGCCAAG+AGG 0.694553 4_2:-58735658 Msa0610840:three_prime_UTR
ATACCGGCGATATAAATCAA+CGG 0.703205 4_2:+58741546 None:intergenic
AGTATCAGAAATGCACTCAG+TGG 0.721917 4_2:+58736275 None:intergenic
ATGGAAGTTTGGAATCACAA+GGG 0.724437 4_2:+58738921 None:intergenic
GTATCATTGCTAAAACAATG+TGG 0.733568 4_2:+58735755 None:intergenic
GTGTTCGTCACAACCCAGGG+TGG 0.740890 4_2:-58736769 Msa0610840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAACTATTAATTTATATA+CGG - chr4_2:58738383-58738402 Msa0610840:intron 10.0%
!! GAAAGTAATAATAAATTAAA+GGG + chr4_2:58741027-58741046 None:intergenic 10.0%
!! AGTTATTGTTATAATAAAGT+AGG - chr4_2:58736587-58736606 Msa0610840:intron 15.0%
!!! AATTTTCAACTTATAAAAAG+AGG + chr4_2:58736984-58737003 None:intergenic 15.0%
!!! TTTTTATAAGTTGAAAATTC+AGG - chr4_2:58736985-58737004 Msa0610840:CDS 15.0%
!! AAAAAAATTAATTGCATGTT+TGG + chr4_2:58737204-58737223 None:intergenic 15.0%
!!! TTCATACTTTTCTATTTTTA+TGG - chr4_2:58737457-58737476 Msa0610840:intron 15.0%
!! AAGTAATTAGTATATAAACT+TGG + chr4_2:58737914-58737933 None:intergenic 15.0%
!! TATATACTAATTACTTCATT+TGG - chr4_2:58737918-58737937 Msa0610840:intron 15.0%
!!! TTTGTGCTTTTAATATTAAT+TGG - chr4_2:58738726-58738745 Msa0610840:intron 15.0%
!! GATATATAGATAAATCATTA+GGG + chr4_2:58739271-58739290 None:intergenic 15.0%
!! CTAATGATTTATCTATATAT+CGG - chr4_2:58739270-58739289 Msa0610840:intron 15.0%
!!! TAATTAAATTTTATTCATGC+AGG - chr4_2:58739769-58739788 Msa0610840:intron 15.0%
!!! AATTAAATTTTATTCATGCA+GGG - chr4_2:58739770-58739789 Msa0610840:intron 15.0%
!! AAGAAAAGAAAGAAAAATTT+AGG - chr4_2:58740318-58740337 Msa0610840:intron 15.0%
!! GGAAAGTAATAATAAATTAA+AGG + chr4_2:58741028-58741047 None:intergenic 15.0%
!!! TTTGTTATTCTTTTACATTA+TGG - chr4_2:58741768-58741787 Msa0610840:exon 15.0%
!!! TAATTTTTGATTGTGAATGT+AGG + chr4_2:58735641-58735660 None:intergenic 20.0%
!! AAAAATACAGATTCGAAAAA+AGG + chr4_2:58736181-58736200 None:intergenic 20.0%
!!! TGTGATGATTTTTTAGTATT+TGG - chr4_2:58736212-58736231 Msa0610840:three_prime_UTR 20.0%
!!! AATTAAGCTTATGAAAGTTT+TGG - chr4_2:58736289-58736308 Msa0610840:three_prime_UTR 20.0%
!!! TATGAAAGTTTTGGATTTAT+AGG - chr4_2:58736298-58736317 Msa0610840:three_prime_UTR 20.0%
!! TTATACAGATTGTTGAAATT+CGG + chr4_2:58736647-58736666 None:intergenic 20.0%
!! AAAGAAAATGTCATCATTTA+TGG + chr4_2:58737623-58737642 None:intergenic 20.0%
!! TATCCAAAGGAAAAAAATAT+TGG - chr4_2:58738194-58738213 Msa0610840:intron 20.0%
!! ATCCAAAGGAAAAAAATATT+GGG - chr4_2:58738195-58738214 Msa0610840:intron 20.0%
!!! ACATAAAATCTTTTAGATGA+TGG - chr4_2:58738218-58738237 Msa0610840:intron 20.0%
!!! CATTATGTGTTTTCAAATAT+TGG - chr4_2:58738505-58738524 Msa0610840:intron 20.0%
!! ACATCATTCACAAAATAAAT+GGG + chr4_2:58738553-58738572 None:intergenic 20.0%
!! AGTTAATAGTTAAAACAGTT+TGG - chr4_2:58739080-58739099 Msa0610840:CDS 20.0%
!! GTTAATAGTTAAAACAGTTT+GGG - chr4_2:58739081-58739100 Msa0610840:CDS 20.0%
!! TTAATAGTTAAAACAGTTTG+GGG - chr4_2:58739082-58739101 Msa0610840:CDS 20.0%
!! CGATATATAGATAAATCATT+AGG + chr4_2:58739272-58739291 None:intergenic 20.0%
!!! ATTATTTTAAGCTTCATCTA+AGG - chr4_2:58739298-58739317 Msa0610840:intron 20.0%
!!! TTATTTTAAGCTTCATCTAA+GGG - chr4_2:58739299-58739318 Msa0610840:intron 20.0%
!!! CTAAAATCGTTAAAGTTTTA+AGG + chr4_2:58740293-58740312 None:intergenic 20.0%
!! AGTAATAATAAATTAAAGGG+AGG + chr4_2:58741024-58741043 None:intergenic 20.0%
!! ATTTATTATTACTTTCCAGA+TGG - chr4_2:58741031-58741050 Msa0610840:intron 20.0%
!! AATGAAATGAATGTTTTGCA+AGG + chr4_2:58735599-58735618 None:intergenic 25.0%
!! GCTTTATTCTAATCTGAAAA+AGG - chr4_2:58736110-58736129 Msa0610840:three_prime_UTR 25.0%
! TTCTAATCTGAAAAAGGATA+TGG - chr4_2:58736116-58736135 Msa0610840:three_prime_UTR 25.0%
! GTATTTGCTTATTCTGATTT+AGG - chr4_2:58736259-58736278 Msa0610840:three_prime_UTR 25.0%
!!! TAGGTTGATTTCAATTGTAT+TGG - chr4_2:58736317-58736336 Msa0610840:three_prime_UTR 25.0%
!! TTGGATTTTTGTAGTCAAAT+AGG - chr4_2:58736336-58736355 Msa0610840:three_prime_UTR 25.0%
! TTGTAGTCAAATAGGTTATT+AGG - chr4_2:58736344-58736363 Msa0610840:exon 25.0%
! AACACGCATTATTTATTCAA+CGG + chr4_2:58736479-58736498 None:intergenic 25.0%
! TATACAGATTGTTGAAATTC+GGG + chr4_2:58736646-58736665 None:intergenic 25.0%
! GCAATGATTATGTAAATAGT+TGG - chr4_2:58736674-58736693 Msa0610840:CDS 25.0%
! TGATTATGTAAATAGTTGGT+TGG - chr4_2:58736678-58736697 Msa0610840:CDS 25.0%
!!! ATTTTTCAGCTTCTTCTATA+AGG - chr4_2:58737273-58737292 Msa0610840:intron 25.0%
! TGAAGATATATGAAGTACAA+TGG + chr4_2:58737441-58737460 None:intergenic 25.0%
! TCTTTCAGATATCTACAATA+TGG - chr4_2:58737519-58737538 Msa0610840:intron 25.0%
!! TATAATTTTGTCGATGCTTT+TGG - chr4_2:58737852-58737871 Msa0610840:intron 25.0%
! TACTAATTACTTCATTTGGA+TGG - chr4_2:58737922-58737941 Msa0610840:intron 25.0%
! GAGAAGATAGAAAAATACTA+GGG + chr4_2:58738153-58738172 None:intergenic 25.0%
! AGAGAAGATAGAAAAATACT+AGG + chr4_2:58738154-58738173 None:intergenic 25.0%
!! AATTTCCTTTTTCTATCCAA+AGG - chr4_2:58738181-58738200 Msa0610840:intron 25.0%
!! TTTTTCCTTTGGATAGAAAA+AGG + chr4_2:58738189-58738208 None:intergenic 25.0%
!! TTGCCATTTAATTTATGAAG+TGG - chr4_2:58738248-58738267 Msa0610840:intron 25.0%
! TAATAGTTAGTGAAACAAAG+TGG + chr4_2:58738374-58738393 None:intergenic 25.0%
! AAATGGATACATATATGTAG+AGG - chr4_2:58738434-58738453 Msa0610840:intron 25.0%
! GACATCATTCACAAAATAAA+TGG + chr4_2:58738554-58738573 None:intergenic 25.0%
!!! ATACTATGATAATGGAAGTT+TGG + chr4_2:58738639-58738658 None:intergenic 25.0%
! ACTTCCATTATCATAGTATA+TGG - chr4_2:58738640-58738659 Msa0610840:CDS 25.0%
! CTTTCCATATACTATGATAA+TGG + chr4_2:58738647-58738666 None:intergenic 25.0%
! TTAATTGGTTATGTGTTTCT+TGG - chr4_2:58738741-58738760 Msa0610840:intron 25.0%
! GAAATATTATGGATCAGATT+GGG + chr4_2:58738803-58738822 None:intergenic 25.0%
! TGAAATATTATGGATCAGAT+TGG + chr4_2:58738804-58738823 None:intergenic 25.0%
! ACTGGAAATGTGAAATATTA+TGG + chr4_2:58738814-58738833 None:intergenic 25.0%
!!! ATGTTTGTTTTACTTTATCG+TGG - chr4_2:58739042-58739061 Msa0610840:intron 25.0%
!!! TGTTTGTTTTACTTTATCGT+GGG - chr4_2:58739043-58739062 Msa0610840:intron 25.0%
! AAAACGATACTTAAAAGGAA+TGG + chr4_2:58739167-58739186 None:intergenic 25.0%
! CCAATAAAACGATACTTAAA+AGG + chr4_2:58739172-58739191 None:intergenic 25.0%
!!! CCTTTTAAGTATCGTTTTAT+TGG - chr4_2:58739169-58739188 Msa0610840:intron 25.0%
! GATTTATCTATATATCGGAT+AGG - chr4_2:58739275-58739294 Msa0610840:intron 25.0%
!!! TATTTTAAGCTTCATCTAAG+GGG - chr4_2:58739300-58739319 Msa0610840:intron 25.0%
! AAATATCATTATTACCCCAT+CGG - chr4_2:58739686-58739705 Msa0610840:intron 25.0%
!! GTTTTCTTATCAAATATGCT+AGG - chr4_2:58739719-58739738 Msa0610840:intron 25.0%
! TAGTCTAGCTAAAATTTCAA+AGG - chr4_2:58740368-58740387 Msa0610840:intron 25.0%
! ATATAATGCTGAGAAAACAA+TGG - chr4_2:58740537-58740556 Msa0610840:intron 25.0%
!! TCTTTGATAATCCCAATATA+GGG - chr4_2:58740892-58740911 Msa0610840:intron 25.0%
! ATGATACATTACCCTATATT+GGG + chr4_2:58740906-58740925 None:intergenic 25.0%
! AATGATACATTACCCTATAT+TGG + chr4_2:58740907-58740926 None:intergenic 25.0%
! AGCTAATGTAAATTCAAACA+AGG + chr4_2:58740948-58740967 None:intergenic 25.0%
! ATTCCTTTGATCTTCAAAAA+TGG + chr4_2:58741346-58741365 None:intergenic 25.0%
!!! TTTTTGAAGATCAAAGGAAT+TGG - chr4_2:58741346-58741365 Msa0610840:intron 25.0%
! AGTATGATATTCATGTGTTA+AGG - chr4_2:58741573-58741592 Msa0610840:CDS 25.0%
! TCTGTACATTAACAAAATTC+AGG - chr4_2:58741613-58741632 Msa0610840:CDS 25.0%
! CTGTACATTAACAAAATTCA+GGG - chr4_2:58741614-58741633 Msa0610840:CDS 25.0%
! ATGAATGTTTTGCAAGGTTT+GGG + chr4_2:58735593-58735612 None:intergenic 30.0%
! AATGAATGTTTTGCAAGGTT+TGG + chr4_2:58735594-58735613 None:intergenic 30.0%
TCTTTCTGTGTGTATCAAAA+CGG + chr4_2:58735726-58735745 None:intergenic 30.0%
TATGCTTCTTTATATGGGAA+CGG - chr4_2:58736020-58736039 Msa0610840:three_prime_UTR 30.0%
TTCAGATTAGAATAAAGCTG+AGG + chr4_2:58736108-58736127 None:intergenic 30.0%
TCTGAAAAAGGATATGGATT+CGG - chr4_2:58736122-58736141 Msa0610840:three_prime_UTR 30.0%
ATACAGATTGTTGAAATTCG+GGG + chr4_2:58736645-58736664 None:intergenic 30.0%
TATGTAAATAGTTGGTTGGT+TGG - chr4_2:58736682-58736701 Msa0610840:CDS 30.0%
GAATTGGAATTACTTGCTTA+TGG - chr4_2:58736704-58736723 Msa0610840:CDS 30.0%
!!! GTGTTTTCTAGCTTGTTATT+TGG - chr4_2:58736754-58736773 Msa0610840:CDS 30.0%
GAGGTGGGAATAAAAATATT+TGG - chr4_2:58736778-58736797 Msa0610840:CDS 30.0%
!! TTCAGTAACTTTTTCTCCTA+CGG + chr4_2:58736948-58736967 None:intergenic 30.0%
CAAACATGAAATATCTGCAA+GGG + chr4_2:58737014-58737033 None:intergenic 30.0%
ACAAACATGAAATATCTGCA+AGG + chr4_2:58737015-58737034 None:intergenic 30.0%
CAGTATTGTCATCATCAATA+TGG - chr4_2:58737036-58737055 Msa0610840:CDS 30.0%
AATCACATTGAATTCACCTA+GGG + chr4_2:58737118-58737137 None:intergenic 30.0%
!! GTTTTGTTAACTCTGGAAAT+TGG + chr4_2:58737153-58737172 None:intergenic 30.0%
!! TATGTGTGTTTTGTTAACTC+TGG + chr4_2:58737160-58737179 None:intergenic 30.0%
! TTTATGTTTTTCTTGACTGC+TGG - chr4_2:58737222-58737241 Msa0610840:intron 30.0%
TCTGAAGATCTATTTACACA+TGG + chr4_2:58737575-58737594 None:intergenic 30.0%
TGTGTAAATAGATCTTCAGA+AGG - chr4_2:58737575-58737594 Msa0610840:CDS 30.0%
!! TACAAAGCGTTGTTAAATAG+CGG - chr4_2:58737742-58737761 Msa0610840:CDS 30.0%
!! CCTTTAAAACAGAAAAGACT+AGG + chr4_2:58738116-58738135 None:intergenic 30.0%
!! CCTAGTCTTTTCTGTTTTAA+AGG - chr4_2:58738113-58738132 Msa0610840:intron 30.0%
!!! GTCCCAATATTTTTTTCCTT+TGG + chr4_2:58738200-58738219 None:intergenic 30.0%
GGACCACTTCATAAATTAAA+TGG + chr4_2:58738254-58738273 None:intergenic 30.0%
TATACGGTTGTATTGTTGAT+AGG - chr4_2:58738399-58738418 Msa0610840:intron 30.0%
TATATGTATCCATTTGACTC+AGG + chr4_2:58738429-58738448 None:intergenic 30.0%
TACATATATGTAGAGGCTAA+TGG - chr4_2:58738441-58738460 Msa0610840:intron 30.0%
TGAATGATGTCAATGCTTAT+AGG - chr4_2:58738563-58738582 Msa0610840:CDS 30.0%
ATAGTATATGGAAAGATCCT+AGG - chr4_2:58738652-58738671 Msa0610840:CDS 30.0%
TTCACATTTCCAGTAAATTC+AGG - chr4_2:58738820-58738839 Msa0610840:intron 30.0%
TCACATTTCCAGTAAATTCA+GGG - chr4_2:58738821-58738840 Msa0610840:intron 30.0%
ATATCCTGAAAAATGATGTG+CGG - chr4_2:58738871-58738890 Msa0610840:intron 30.0%
TGACAAATGTTCACAATTTC+AGG - chr4_2:58738943-58738962 Msa0610840:CDS 30.0%
CACATCTCTATAATACTGAA+TGG + chr4_2:58738985-58739004 None:intergenic 30.0%
CATTCAGTATTATAGAGATG+TGG - chr4_2:58738983-58739002 Msa0610840:intron 30.0%
! ACTTTTCTTCAAGTAGCTTT+GGG + chr4_2:58739013-58739032 None:intergenic 30.0%
! TTTCATTCTTTTCCTAACCT+TGG + chr4_2:58739122-58739141 None:intergenic 30.0%
AAGGTTAGGAAAAGAATGAA+AGG - chr4_2:58739121-58739140 Msa0610840:CDS 30.0%
! ATTTTAAGCTTCATCTAAGG+GGG - chr4_2:58739301-58739320 Msa0610840:intron 30.0%
!! ATTTTTAGATCCAAGTGTGT+AGG - chr4_2:58739449-58739468 Msa0610840:intron 30.0%
AAAACTCCTATTTATCCGAT+GGG + chr4_2:58739704-58739723 None:intergenic 30.0%
AACATATTTACCGCCATTAA+CGG + chr4_2:58739952-58739971 None:intergenic 30.0%
TTAATCTTTAGTGCAACTGA+TGG - chr4_2:58740066-58740085 Msa0610840:intron 30.0%
!! TTCTCCTGTTGTATTTTTGA+TGG - chr4_2:58740124-58740143 Msa0610840:intron 30.0%
GTAAATGCTTTCATTTCTTC+AGG - chr4_2:58740447-58740466 Msa0610840:intron 30.0%
! GAAGAACACATCTATCTTTT+TGG - chr4_2:58740501-58740520 Msa0610840:intron 30.0%
TTAGGAAACATTTGTAGTAG+TGG + chr4_2:58740565-58740584 None:intergenic 30.0%
AAGAGGAACTTTCTACATTT+AGG - chr4_2:58740614-58740633 Msa0610840:intron 30.0%
AGAGGAACTTTCTACATTTA+GGG - chr4_2:58740615-58740634 Msa0610840:intron 30.0%
!! TGTTCTAGAATTATTCTTCC+AGG - chr4_2:58740715-58740734 Msa0610840:intron 30.0%
! CTCTTTGATAATCCCAATAT+AGG - chr4_2:58740891-58740910 Msa0610840:intron 30.0%
! TGATGAAGATTTTGAATCGT+CGG + chr4_2:58741184-58741203 None:intergenic 30.0%
ATCTACTCACGTAATTTGAT+TGG - chr4_2:58741212-58741231 Msa0610840:intron 30.0%
CTTTGATCTTCAAAAATGGT+GGG + chr4_2:58741342-58741361 None:intergenic 30.0%
AGGAATTGGATCAAATATCA+AGG - chr4_2:58741360-58741379 Msa0610840:intron 30.0%
GGAATTGGATCAAATATCAA+GGG - chr4_2:58741361-58741380 Msa0610840:intron 30.0%
!! TTTTCCATTCTGTTCTGAAT+TGG + chr4_2:58741413-58741432 None:intergenic 30.0%
TCATACTTCACATAATGTAC+AGG + chr4_2:58741560-58741579 None:intergenic 30.0%
CAAAATACGAAACTGATAAC+AGG + chr4_2:58741694-58741713 None:intergenic 30.0%
!!! TTTTGTTTTCCTTCACATTG+AGG - chr4_2:58741709-58741728 Msa0610840:CDS 30.0%
!! TTTGTTTTCCTTCACATTGA+GGG - chr4_2:58741710-58741729 Msa0610840:CDS 30.0%
GTATCATTGCTAAAACAATG+TGG + chr4_2:58741794-58741813 None:intergenic 30.0%
GAATAGTGAAATAGTTACAC+TGG + chr4_2:58741816-58741835 None:intergenic 30.0%
AGCAAAATTTCTCAATTGCT+TGG + chr4_2:58741842-58741861 None:intergenic 30.0%
AAAACGACGAAGATGAAGAA+AGG + chr4_2:58735691-58735710 None:intergenic 35.0%
ATACCGGCGATATAAATCAA+CGG + chr4_2:58736003-58736022 None:intergenic 35.0%
! TCCCATATAAAGAAGCATAC+CGG + chr4_2:58736019-58736038 None:intergenic 35.0%
GTTATTAGGTCTGAATTCGA+TGG - chr4_2:58736358-58736377 Msa0610840:CDS 35.0%
ATAATGCGTGTTAGTACTGT+AGG - chr4_2:58736487-58736506 Msa0610840:CDS 35.0%
TAATGCGTGTTAGTACTGTA+GGG - chr4_2:58736488-58736507 Msa0610840:CDS 35.0%
! AATAGTTGGTTGGTTGGAAT+TGG - chr4_2:58736688-58736707 Msa0610840:CDS 35.0%
!! TTCTAGCTTGTTATTTGGTG+AGG - chr4_2:58736759-58736778 Msa0610840:CDS 35.0%
TTTGGCCACATTCATGTAAT+AGG - chr4_2:58736796-58736815 Msa0610840:CDS 35.0%
ATTCGCCTATTACATGAATG+TGG + chr4_2:58736804-58736823 None:intergenic 35.0%
TCCTATCCAATCAAATGACA+CGG + chr4_2:58736852-58736871 None:intergenic 35.0%
! TGTCATTTGATTGGATAGGA+TGG - chr4_2:58736852-58736871 Msa0610840:intron 35.0%
GTCATTTGATTGGATAGGAT+GGG - chr4_2:58736853-58736872 Msa0610840:intron 35.0%
!! CTTATAAAAAGAGGCATCTC+TGG + chr4_2:58736975-58736994 None:intergenic 35.0%
TCTTCCAACAAGTATGTGTT+TGG - chr4_2:58737064-58737083 Msa0610840:CDS 35.0%
CAATCCAAACACATACTTGT+TGG + chr4_2:58737071-58737090 None:intergenic 35.0%
CAACAAGTATGTGTTTGGAT+TGG - chr4_2:58737069-58737088 Msa0610840:CDS 35.0%
GAATCACATTGAATTCACCT+AGG + chr4_2:58737119-58737138 None:intergenic 35.0%
TTTGACCATCGAATAATTGC+TGG - chr4_2:58737329-58737348 Msa0610840:CDS 35.0%
TATCTCCAGCAATTATTCGA+TGG + chr4_2:58737337-58737356 None:intergenic 35.0%
ATATGGAGAAGTCCATATAG+AGG - chr4_2:58737536-58737555 Msa0610840:intron 35.0%
CTCTCAATGTTGTCAAGTAA+CGG - chr4_2:58737646-58737665 Msa0610840:CDS 35.0%
! TAGCGGCTATTTCAACTTTA+TGG - chr4_2:58737759-58737778 Msa0610840:intron 35.0%
! TTGATTCGTCTATTCCTTGT+TGG - chr4_2:58737880-58737899 Msa0610840:intron 35.0%
TGCTATACACATAAGTGTGA+GGG + chr4_2:58737983-58738002 None:intergenic 35.0%
ATGCTATACACATAAGTGTG+AGG + chr4_2:58737984-58738003 None:intergenic 35.0%
CTTATGTGTATAGCATCTCT+TGG - chr4_2:58737988-58738007 Msa0610840:intron 35.0%
GATAGAAAAATACTAGGGTG+AGG + chr4_2:58738148-58738167 None:intergenic 35.0%
ATGAAGTGGTCCATTATTGT+CGG - chr4_2:58738262-58738281 Msa0610840:intron 35.0%
! ATAAGGTATCCCGACAATAA+TGG + chr4_2:58738275-58738294 None:intergenic 35.0%
ACAGCATCAATTCATGCATA+AGG + chr4_2:58738292-58738311 None:intergenic 35.0%
TATGCATGAATTGATGCTGT+TGG - chr4_2:58738292-58738311 Msa0610840:intron 35.0%
TAGTTAGTGAAACAAAGTGG+TGG + chr4_2:58738371-58738390 None:intergenic 35.0%
ATATATGTAGAGGCTAATGG+TGG - chr4_2:58738444-58738463 Msa0610840:intron 35.0%
CTTAAATCAGCAAAGGACAT+CGG - chr4_2:58738467-58738486 Msa0610840:intron 35.0%
! ATGGAAGTTTGGAATCACAA+GGG + chr4_2:58738628-58738647 None:intergenic 35.0%
! AATGGAAGTTTGGAATCACA+AGG + chr4_2:58738629-58738648 None:intergenic 35.0%
TATATGGAAAGATCCTAGGT+TGG - chr4_2:58738656-58738675 Msa0610840:CDS 35.0%
GTTCGTCTGAACTATATCTT+CGG - chr4_2:58738678-58738697 Msa0610840:CDS 35.0%
CTAAATAAACAACACCATCG+TGG + chr4_2:58738770-58738789 None:intergenic 35.0%
TATCCTGAAAAATGATGTGC+GGG - chr4_2:58738872-58738891 Msa0610840:intron 35.0%
TGTTCACAATTTCAGGATCA+AGG - chr4_2:58738950-58738969 Msa0610840:CDS 35.0%
! CACTTTTCTTCAAGTAGCTT+TGG + chr4_2:58739014-58739033 None:intergenic 35.0%
! TTAAAACAGTTTGGGGTGAT+TGG - chr4_2:58739089-58739108 Msa0610840:CDS 35.0%
CGATACTTAAAAGGAATGGT+GGG + chr4_2:58739163-58739182 None:intergenic 35.0%
ACGATACTTAAAAGGAATGG+TGG + chr4_2:58739164-58739183 None:intergenic 35.0%
! TCATATATACGTGTGCTGTT+TGG - chr4_2:58739333-58739352 Msa0610840:intron 35.0%
!! TCAAATGTCATAAGAGCGTT+AGG + chr4_2:58739401-58739420 None:intergenic 35.0%
AACTGTATTTGCTTTCTTGC+TGG - chr4_2:58739507-58739526 Msa0610840:intron 35.0%
! TTTCTTGCTGGTTATCTGTA+TGG - chr4_2:58739519-58739538 Msa0610840:intron 35.0%
GTTATGATTAAGGCTTGATG+TGG + chr4_2:58739626-58739645 None:intergenic 35.0%
AGCCTTAATCATAACCAATG+TGG - chr4_2:58739631-58739650 Msa0610840:intron 35.0%
GCCTTAATCATAACCAATGT+GGG - chr4_2:58739632-58739651 Msa0610840:intron 35.0%
CCTTAATCATAACCAATGTG+GGG - chr4_2:58739633-58739652 Msa0610840:intron 35.0%
TATTACCCCATCGGATAAAT+AGG - chr4_2:58739695-58739714 Msa0610840:intron 35.0%
AAACTCCTATTTATCCGATG+GGG + chr4_2:58739703-58739722 None:intergenic 35.0%
GAAAACTCCTATTTATCCGA+TGG + chr4_2:58739705-58739724 None:intergenic 35.0%
TCTTATCAAATATGCTAGGC+TGG - chr4_2:58739723-58739742 Msa0610840:intron 35.0%
AAGGACAATCTATTCGCAAA+AGG + chr4_2:58739810-58739829 None:intergenic 35.0%
TAGCAAATTACGAGGCTTTA+CGG - chr4_2:58739865-58739884 Msa0610840:intron 35.0%
!!! TCAAGACCTATTTTGACCAT+AGG - chr4_2:58739891-58739910 Msa0610840:intron 35.0%
GATTCACCTATGGTCAAAAT+AGG + chr4_2:58739900-58739919 None:intergenic 35.0%
TTTGACCATAGGTGAATCTT+TGG - chr4_2:58739902-58739921 Msa0610840:intron 35.0%
TTCAACCAAAGATTCACCTA+TGG + chr4_2:58739910-58739929 None:intergenic 35.0%
!!! TGTACATCTTCGTTTTGAAG+AGG - chr4_2:58739974-58739993 Msa0610840:CDS 35.0%
!! TCCTGTTGTATTTTTGATGG+TGG - chr4_2:58740127-58740146 Msa0610840:intron 35.0%
!! CCTGTTGTATTTTTGATGGT+GGG - chr4_2:58740128-58740147 Msa0610840:intron 35.0%
!!! TATTTTTGATGGTGGGAAAC+AGG - chr4_2:58740135-58740154 Msa0610840:intron 35.0%
AAAGGGAAATTTACAAAGCC+TGG - chr4_2:58740196-58740215 Msa0610840:intron 35.0%
AGGAGATAATAACCTCTAGT+GGG + chr4_2:58740273-58740292 None:intergenic 35.0%
AAGGAGATAATAACCTCTAG+TGG + chr4_2:58740274-58740293 None:intergenic 35.0%
! CACTCAACATTTGCTGAATA+AGG + chr4_2:58740397-58740416 None:intergenic 35.0%
ATGCTTTCATTTCTTCAGGT+TGG - chr4_2:58740451-58740470 Msa0610840:intron 35.0%
!! ACATCTATCTTTTTGGCATC+TGG - chr4_2:58740508-58740527 Msa0610840:intron 35.0%
! GTTTCCTAATTTGCATACGA+AGG - chr4_2:58740576-58740595 Msa0610840:intron 35.0%
GGGGACAAATAACATAACAT+GGG + chr4_2:58740655-58740674 None:intergenic 35.0%
AGGGGACAAATAACATAACA+TGG + chr4_2:58740656-58740675 None:intergenic 35.0%
CTAGAATTATTCTTCCAGGA+TGG - chr4_2:58740719-58740738 Msa0610840:intron 35.0%
AGACAATTAAGCCTGATAAG+CGG - chr4_2:58740856-58740875 Msa0610840:intron 35.0%
AAGCTGTATATAGAGTCGTT+TGG + chr4_2:58741126-58741145 None:intergenic 35.0%
!!! TTTTGAATCGTCGGTTCTAT+TGG + chr4_2:58741175-58741194 None:intergenic 35.0%
CCTTTGATCTTCAAAAATGG+TGG + chr4_2:58741343-58741362 None:intergenic 35.0%
!! CCACCATTTTTGAAGATCAA+AGG - chr4_2:58741340-58741359 Msa0610840:intron 35.0%
AATGGAAAATGTTCCTTTGC+AGG - chr4_2:58741424-58741443 Msa0610840:CDS 35.0%
! CATAGCTCACTCAATGTTTT+GGG + chr4_2:58741457-58741476 None:intergenic 35.0%
! ACATAGCTCACTCAATGTTT+TGG + chr4_2:58741458-58741477 None:intergenic 35.0%
! AACGAGCTATTTAGAGTCAA+AGG - chr4_2:58741508-58741527 Msa0610840:CDS 35.0%
CCTAAAACAGACCAAGAAAA+CGG + chr4_2:58741650-58741669 None:intergenic 35.0%
GAAGAAACAGAGTTTAAGAG+TGG - chr4_2:58741874-58741893 Msa0610840:five_prime_UTR 35.0%
! ATATTTTCACCAGTTCCTCT+TGG + chr4_2:58741906-58741925 None:intergenic 35.0%
! ATCGTTGATCTGAAATGCAC+CGG - chr4_2:58735785-58735804 Msa0610840:three_prime_UTR 40.0%
GCCGGTATGCTTCTTTATAT+GGG - chr4_2:58736015-58736034 Msa0610840:three_prime_UTR 40.0%
GCAGGACGGTGTTTAATAAT+CGG + chr4_2:58736063-58736082 None:intergenic 40.0%
TGAATTCGATGGTGCAATGT+GGG - chr4_2:58736369-58736388 Msa0610840:CDS 40.0%
! CTAGTCTGCTCATTGATTGT+AGG - chr4_2:58736532-58736551 Msa0610840:intron 40.0%
TTGCTTATGGTGCTTACTAG+CGG - chr4_2:58736717-58736736 Msa0610840:CDS 40.0%
!! TAGCTTGTTATTTGGTGAGG+TGG - chr4_2:58736762-58736781 Msa0610840:CDS 40.0%
!! AGCTTGTTATTTGGTGAGGT+GGG - chr4_2:58736763-58736782 Msa0610840:CDS 40.0%
CCTATCCAATCAAATGACAC+GGG + chr4_2:58736851-58736870 None:intergenic 40.0%
TTCCATTCACCACCTCTATA+TGG + chr4_2:58737551-58737570 None:intergenic 40.0%
TATGCTGTAGTGCTATAGCA+CGG + chr4_2:58737678-58737697 None:intergenic 40.0%
! TAGAGCAACTTGTTCAAACG+TGG + chr4_2:58737830-58737849 None:intergenic 40.0%
ACTTGGTCAATCTACCAACA+AGG + chr4_2:58737897-58737916 None:intergenic 40.0%
TGAAGTGGTCCATTATTGTC+GGG - chr4_2:58738263-58738282 Msa0610840:intron 40.0%
ATAGGTCTACCTGAGTCAAA+TGG - chr4_2:58738417-58738436 Msa0610840:intron 40.0%
ATGGTGGCTTAAATCAGCAA+AGG - chr4_2:58738460-58738479 Msa0610840:intron 40.0%
GTCTGAACTATATCTTCGGA+TGG - chr4_2:58738682-58738701 Msa0610840:CDS 40.0%
GTAGATGTCCCTGAATTTAC+TGG + chr4_2:58738832-58738851 None:intergenic 40.0%
AATCTTTCCATCAGGTACTC+AGG + chr4_2:58738912-58738931 None:intergenic 40.0%
GAGTACCTGATGGAAAGATT+TGG - chr4_2:58738912-58738931 Msa0610840:CDS 40.0%
ACAATTTCAGGATCAAGGCA+TGG - chr4_2:58738955-58738974 Msa0610840:CDS 40.0%
ATTGGTACTTGTCCAAGGTT+AGG - chr4_2:58739107-58739126 Msa0610840:CDS 40.0%
GTTTAGCAGATACAGCAACA+TGG + chr4_2:58739371-58739390 None:intergenic 40.0%
ACATCAGAAGAGTGGTCAAT+TGG - chr4_2:58739575-58739594 Msa0610840:intron 40.0%
CATCAGAAGAGTGGTCAATT+GGG - chr4_2:58739576-58739595 Msa0610840:intron 40.0%
! CCCCACATTGGTTATGATTA+AGG + chr4_2:58739636-58739655 None:intergenic 40.0%
!!! CATCTTCGTTTTGAAGAGGT+TGG - chr4_2:58739978-58739997 Msa0610840:CDS 40.0%
CCCACCATCAAAAATACAAC+AGG + chr4_2:58740131-58740150 None:intergenic 40.0%
ATGATTGCTGCAAGAGAAAG+AGG - chr4_2:58740169-58740188 Msa0610840:intron 40.0%
CAAGAGAAAGAGGTTGGAAA+GGG - chr4_2:58740179-58740198 Msa0610840:intron 40.0%
GGAGATAATAACCTCTAGTG+GGG + chr4_2:58740272-58740291 None:intergenic 40.0%
GTCTCCTTCGTATGCAAATT+AGG + chr4_2:58740583-58740602 None:intergenic 40.0%
! TTATGTTATTTGTCCCCTCC+AGG - chr4_2:58740658-58740677 Msa0610840:intron 40.0%
! TAACTTTCCCCATTTTCTGC+TGG - chr4_2:58740800-58740819 Msa0610840:intron 40.0%
! AACTTTCCCCATTTTCTGCT+GGG - chr4_2:58740801-58740820 Msa0610840:intron 40.0%
CACCATACAAGTATCTTCTG+TGG + chr4_2:58740827-58740846 None:intergenic 40.0%
CACAGAAGATACTTGTATGG+TGG - chr4_2:58740825-58740844 Msa0610840:intron 40.0%
AATGCTAACTTCCGCTTATC+AGG + chr4_2:58740870-58740889 None:intergenic 40.0%
AGGCATGCTCACAAAATCAT+AGG + chr4_2:58741249-58741268 None:intergenic 40.0%
AGTATCAGAAATGCACTCAG+TGG + chr4_2:58741274-58741293 None:intergenic 40.0%
TGGATCAAATATCAAGGGAG+TGG - chr4_2:58741366-58741385 Msa0610840:intron 40.0%
GATGCCAATTCAGAACAGAA+TGG - chr4_2:58741406-58741425 Msa0610840:CDS 40.0%
ACTTCACATAATGTACAGGC+AGG + chr4_2:58741556-58741575 None:intergenic 40.0%
AACAGACCAAGAAAACGGTA+TGG + chr4_2:58741645-58741664 None:intergenic 40.0%
! CCGTTTTCTTGGTCTGTTTT+AGG - chr4_2:58741647-58741666 Msa0610840:CDS 40.0%
TAAGAGTGGAAATAGCCAAG+AGG - chr4_2:58741888-58741907 Msa0610840:five_prime_UTR 40.0%
TGAAGAAAATTTCCCCGCCT+TGG + chr4_2:58735887-58735906 None:intergenic 45.0%
! GGGAAATTTTCTTCACCCTC+CGG - chr4_2:58735892-58735911 Msa0610840:three_prime_UTR 45.0%
! AAATTTTCTTCACCCTCCGG+TGG - chr4_2:58735895-58735914 Msa0610840:three_prime_UTR 45.0%
ACAGAAAAATCCCTTGTCGC+CGG + chr4_2:58735975-58735994 None:intergenic 45.0%
!! GCTCCGTTGATTTATATCGC+CGG - chr4_2:58735997-58736016 Msa0610840:three_prime_UTR 45.0%
CGCCGGTATGCTTCTTTATA+TGG - chr4_2:58736014-58736033 Msa0610840:three_prime_UTR 45.0%
GGATAACTCTTCTACCGATG+CGG - chr4_2:58736143-58736162 Msa0610840:three_prime_UTR 45.0%
GGCAAAGAAACAAACCGCAT+CGG + chr4_2:58736160-58736179 None:intergenic 45.0%
CTGAATTCGATGGTGCAATG+TGG - chr4_2:58736368-58736387 Msa0610840:CDS 45.0%
!! CCCGTGTCATTTGATTGGAT+AGG - chr4_2:58736848-58736867 Msa0610840:intron 45.0%
AGTGTGACATTGAGACTCGT+AGG - chr4_2:58736879-58736898 Msa0610840:intron 45.0%
GTGTGACATTGAGACTCGTA+GGG - chr4_2:58736880-58736899 Msa0610840:intron 45.0%
AGGGTATGAAACCTGACAAG+AGG - chr4_2:58736899-58736918 Msa0610840:intron 45.0%
CACACACACAGACACATGAT+TGG + chr4_2:58737367-58737386 None:intergenic 45.0%
TGGAGAAGTCCATATAGAGG+TGG - chr4_2:58737539-58737558 Msa0610840:intron 45.0%
GTCCATATAGAGGTGGTGAA+TGG - chr4_2:58737546-58737565 Msa0610840:intron 45.0%
GCTATAGCACTACAGCATAG+CGG - chr4_2:58737679-58737698 Msa0610840:CDS 45.0%
CACATAAGTGTGAGGGCAAA+GGG + chr4_2:58737976-58737995 None:intergenic 45.0%
ACACATAAGTGTGAGGGCAA+AGG + chr4_2:58737977-58737996 None:intergenic 45.0%
GCTGCACAATCTCTATACGT+CGG + chr4_2:58738054-58738073 None:intergenic 45.0%
TAGTTCAGACGAACCAACCT+AGG + chr4_2:58738672-58738691 None:intergenic 45.0%
GTGTTTCTTGGTATCCACGA+TGG - chr4_2:58738753-58738772 Msa0610840:intron 45.0%
CAAGATTCCTGAGTACCTGA+TGG - chr4_2:58738902-58738921 Msa0610840:CDS 45.0%
TGCTGCCAAATCTTTCCATC+AGG + chr4_2:58738920-58738939 None:intergenic 45.0%
TGTTGTGTTGCCTACACACT+TGG + chr4_2:58739462-58739481 None:intergenic 45.0%
AGAAGAGTGGTCAATTGGGA+GGG - chr4_2:58739580-58739599 Msa0610840:intron 45.0%
GGCTTGATGTGGTACTTAAG+TGG + chr4_2:58739615-58739634 None:intergenic 45.0%
TATCTGTCATGTCCCCACAT+TGG + chr4_2:58739648-58739667 None:intergenic 45.0%
!! CGTAATTTGCTAAGCACCTG+AGG + chr4_2:58739857-58739876 None:intergenic 45.0%
CAGGTGCTTAGCAAATTACG+AGG - chr4_2:58739857-58739876 Msa0610840:intron 45.0%
ATACACTGTTCTCCATGCAC+AGG - chr4_2:58740090-58740109 Msa0610840:intron 45.0%
TGTTCTCCATGCACAGGATA+TGG - chr4_2:58740096-58740115 Msa0610840:intron 45.0%
AAGCAACCATATCCTGTGCA+TGG + chr4_2:58740105-58740124 None:intergenic 45.0%
TTGCTGCAAGAGAAAGAGGT+TGG - chr4_2:58740173-58740192 Msa0610840:intron 45.0%
GCAAGAGAAAGAGGTTGGAA+AGG - chr4_2:58740178-58740197 Msa0610840:intron 45.0%
TTGCTCCAGGACGTATGATT+CGG + chr4_2:58740222-58740241 None:intergenic 45.0%
AATAACCTCTAGTGGGGTGA+GGG + chr4_2:58740266-58740285 None:intergenic 45.0%
TAATAACCTCTAGTGGGGTG+AGG + chr4_2:58740267-58740286 None:intergenic 45.0%
TTTGCATACGAAGGAGACTC+TGG - chr4_2:58740585-58740604 Msa0610840:intron 45.0%
ATAGAACTACCAGTCCTGGA+GGG + chr4_2:58740675-58740694 None:intergenic 45.0%
AACCATAGAACTACCAGTCC+TGG + chr4_2:58740679-58740698 None:intergenic 45.0%
GTAATCTATAGCAGCCATCC+TGG + chr4_2:58740736-58740755 None:intergenic 45.0%
CACTGTTTGTCTTCGTAGTG+AGG - chr4_2:58740755-58740774 Msa0610840:intron 45.0%
GGCCACAGAAGATACTTGTA+TGG - chr4_2:58740822-58740841 Msa0610840:intron 45.0%
ACGCTTGAAACTTCTCCATC+TGG + chr4_2:58741049-58741068 None:intergenic 45.0%
AGGTCACACAGTGATTCCAA+GGG - chr4_2:58741084-58741103 Msa0610840:intron 45.0%
! TCTTTTCAGCTCAACTCCCT+TGG + chr4_2:58741103-58741122 None:intergenic 45.0%
!! AATCGTCGGTTCTATTGGCA+CGG + chr4_2:58741170-58741189 None:intergenic 45.0%
! TATTTTCCCCCCTTCCCATT+CGG - chr4_2:58741304-58741323 Msa0610840:intron 45.0%
TTTGGGAGAGATTCCTGCAA+AGG + chr4_2:58741440-58741459 None:intergenic 45.0%
AATGTACAGGCAGGTTGTGA+AGG + chr4_2:58741547-58741566 None:intergenic 45.0%
CAACTAGACCCTCAATGTGA+AGG + chr4_2:58741721-58741740 None:intergenic 45.0%
TGGAAATAGCCAAGAGGAAC+TGG - chr4_2:58741894-58741913 Msa0610840:five_prime_UTR 45.0%
!! GCTGAGTTGGATGCTGCTTT+CGG - chr4_2:58735942-58735961 Msa0610840:three_prime_UTR 50.0%
ATTAAACACCGTCCTGCTCC+TGG - chr4_2:58736066-58736085 Msa0610840:three_prime_UTR 50.0%
!! GTACGCCCGTGTCATTTGAT+TGG - chr4_2:58736843-58736862 Msa0610840:intron 50.0%
!! GAAACCTGACAAGAGGTGCT+TGG - chr4_2:58736906-58736925 Msa0610840:intron 50.0%
CTTACCAAGCACCTCTTGTC+AGG + chr4_2:58736913-58736932 None:intergenic 50.0%
!! CTGACAAGAGGTGCTTGGTA+AGG - chr4_2:58736911-58736930 Msa0610840:intron 50.0%
! GAGGTGCTTGGTAAGGAAGT+CGG - chr4_2:58736918-58736937 Msa0610840:intron 50.0%
AGGTGCTTGGTAAGGAAGTC+GGG - chr4_2:58736919-58736938 Msa0610840:intron 50.0%
CCTAGGGACGAGAGAATACA+AGG + chr4_2:58737102-58737121 None:intergenic 50.0%
CCTTGTATTCTCTCGTCCCT+AGG - chr4_2:58737099-58737118 Msa0610840:intron 50.0%
TACGTCGGTATGACTCAGCA+AGG + chr4_2:58738039-58738058 None:intergenic 50.0%
TAGATAGCCAGCCACAGCAA+CGG + chr4_2:58738598-58738617 None:intergenic 50.0%
!! CCACCCGCACATCATTTTTC+AGG + chr4_2:58738878-58738897 None:intergenic 50.0%
CCTGAAAAATGATGTGCGGG+TGG - chr4_2:58738875-58738894 Msa0610840:intron 50.0%
GGGTGATTGGTACTTGTCCA+AGG - chr4_2:58739102-58739121 Msa0610840:CDS 50.0%
!! ATACGTGTGCTGTTTGGAGC+TGG - chr4_2:58739339-58739358 Msa0610840:intron 50.0%
CAGAAGAGTGGTCAATTGGG+AGG - chr4_2:58739579-58739598 Msa0610840:intron 50.0%
!! GACAACTGGAGGAGCATCAA+AGG + chr4_2:58739829-58739848 None:intergenic 50.0%
! AGAGAGCGTAGTGCCGTTAA+TGG - chr4_2:58739936-58739955 Msa0610840:intron 50.0%
TCATACGTCCTGGAGCAATC+AGG - chr4_2:58740224-58740243 Msa0610840:intron 50.0%
CCTGGAGCAATCAGGATCAA+CGG - chr4_2:58740232-58740251 Msa0610840:intron 50.0%
CTGGAGCAATCAGGATCAAC+GGG - chr4_2:58740233-58740252 Msa0610840:intron 50.0%
ATAACCTCTAGTGGGGTGAG+GGG + chr4_2:58740265-58740284 None:intergenic 50.0%
TTATTTGTCCCCTCCAGGAC+TGG - chr4_2:58740663-58740682 Msa0610840:intron 50.0%
TAGAACTACCAGTCCTGGAG+GGG + chr4_2:58740674-58740693 None:intergenic 50.0%
CATAGAACTACCAGTCCTGG+AGG + chr4_2:58740676-58740695 None:intergenic 50.0%
! CTCCAGGACTGGTAGTTCTA+TGG - chr4_2:58740674-58740693 Msa0610840:intron 50.0%
ATGGGGAAAGTTACCACCCT+GGG + chr4_2:58740793-58740812 None:intergenic 50.0%
AATGGGGAAAGTTACCACCC+TGG + chr4_2:58740794-58740813 None:intergenic 50.0%
TCTGTGGCCCAGCAGAAAAT+GGG + chr4_2:58740811-58740830 None:intergenic 50.0%
TTCTGTGGCCCAGCAGAAAA+TGG + chr4_2:58740812-58740831 None:intergenic 50.0%
AGCGTCAACTGCTGAACATG+AGG - chr4_2:58741064-58741083 Msa0610840:intron 50.0%
GAGGTCACACAGTGATTCCA+AGG - chr4_2:58741083-58741102 Msa0610840:intron 50.0%
CGGCACATACATTCTGGACA+TGG + chr4_2:58741150-58741169 None:intergenic 50.0%
TTGGCACGGCACATACATTC+TGG + chr4_2:58741156-58741175 None:intergenic 50.0%
CAGAAATGCACTCAGTGGCA+AGG + chr4_2:58741269-58741288 None:intergenic 50.0%
GGTATGCCTTCTCACCGAAT+GGG + chr4_2:58741321-58741340 None:intergenic 50.0%
! GTCCTGCCATACCGTTTTCT+TGG - chr4_2:58741636-58741655 Msa0610840:CDS 50.0%
GACCAAGAAAACGGTATGGC+AGG + chr4_2:58741641-58741660 None:intergenic 50.0%
AGCGGAGATTGCGGAGATGA+CGG + chr4_2:58735835-58735854 None:intergenic 55.0%
! TTTTCTTCACCCTCCGGTGG+AGG - chr4_2:58735898-58735917 Msa0610840:three_prime_UTR 55.0%
TAAACTCCTCCCTCCTCCAC+CGG + chr4_2:58735914-58735933 None:intergenic 55.0%
GTTTAGCGCAGAGGCTGAGT+TGG - chr4_2:58735929-58735948 Msa0610840:three_prime_UTR 55.0%
!! TGCTGCTTTCGGTGCTTCTC+CGG - chr4_2:58735953-58735972 Msa0610840:three_prime_UTR 55.0%
GGACTACGATAAAGCGAGCC+AGG + chr4_2:58736087-58736106 None:intergenic 55.0%
TAAGGAAGTCGGGTGTCCGT+AGG - chr4_2:58736929-58736948 Msa0610840:intron 55.0%
GGTATGCAATGCCGTTGCTG+TGG - chr4_2:58738584-58738603 Msa0610840:CDS 55.0%
! GAGCGTAGTGCCGTTAATGG+CGG - chr4_2:58739939-58739958 Msa0610840:intron 55.0%
CCGTTGATCCTGATTGCTCC+AGG + chr4_2:58740235-58740254 None:intergenic 55.0%
!! TTCAGGTTGGCCTGATGCTG+AGG - chr4_2:58740464-58740483 Msa0610840:intron 55.0%
!! TCAGGTTGGCCTGATGCTGA+GGG - chr4_2:58740465-58740484 Msa0610840:intron 55.0%
AACCCATTCCCCTCAGCATC+AGG + chr4_2:58740477-58740496 None:intergenic 55.0%
! GGAGACTCTGGCTTCTGAAG+AGG - chr4_2:58740597-58740616 Msa0610840:intron 55.0%
! TGAGGTGTTCGTCACAACCC+AGG - chr4_2:58740773-58740792 Msa0610840:intron 55.0%
! GAGGTGTTCGTCACAACCCA+GGG - chr4_2:58740774-58740793 Msa0610840:intron 55.0%
CTGTGGCCCAGCAGAAAATG+GGG + chr4_2:58740810-58740829 None:intergenic 55.0%
TTCTCACCGAATGGGAAGGG+GGG + chr4_2:58741313-58741332 None:intergenic 55.0%
CTTCTCACCGAATGGGAAGG+GGG + chr4_2:58741314-58741333 None:intergenic 55.0%
CCTTCTCACCGAATGGGAAG+GGG + chr4_2:58741315-58741334 None:intergenic 55.0%
GCCTTCTCACCGAATGGGAA+GGG + chr4_2:58741316-58741335 None:intergenic 55.0%
TGCCTTCTCACCGAATGGGA+AGG + chr4_2:58741317-58741336 None:intergenic 55.0%
GGGTATGCCTTCTCACCGAA+TGG + chr4_2:58741322-58741341 None:intergenic 55.0%
CATCTCCGCAATCTCCGCTC+CGG - chr4_2:58735836-58735855 Msa0610840:three_prime_UTR 60.0%
GAGGGAGGAGTTTAGCGCAG+AGG - chr4_2:58735920-58735939 Msa0610840:three_prime_UTR 60.0%
AAAGCGAGCCAGGAGCAGGA+CGG + chr4_2:58736077-58736096 None:intergenic 60.0%
CGATAAAGCGAGCCAGGAGC+AGG + chr4_2:58736081-58736100 None:intergenic 60.0%
TGCAATGCCGTTGCTGTGGC+TGG - chr4_2:58738588-58738607 Msa0610840:CDS 60.0%
TTGCTAAGCACCTGAGGCGC+TGG + chr4_2:58739851-58739870 None:intergenic 60.0%
! CCAGGACGTATGATTCGGCC+AGG + chr4_2:58740217-58740236 None:intergenic 60.0%
CCTGGCCGAATCATACGTCC+TGG - chr4_2:58740214-58740233 Msa0610840:intron 60.0%
!! CAGGTTGGCCTGATGCTGAG+GGG - chr4_2:58740466-58740485 Msa0610840:intron 60.0%
TGGCCTGATGCTGAGGGGAA+TGG - chr4_2:58740471-58740490 Msa0610840:intron 60.0%
GGCCTGATGCTGAGGGGAAT+GGG - chr4_2:58740472-58740491 Msa0610840:intron 60.0%
GTGTTCGTCACAACCCAGGG+TGG - chr4_2:58740777-58740796 Msa0610840:intron 60.0%
! CCCCTTCCCATTCGGTGAGA+AGG - chr4_2:58741312-58741331 Msa0610840:intron 60.0%
!! ATGCACCGGCTACCGAGCAG+CGG - chr4_2:58735799-58735818 Msa0610840:three_prime_UTR 65.0%
AATGCCCGCTGCTCGGTAGC+CGG + chr4_2:58735807-58735826 None:intergenic 65.0%
TCTTCACCCTCCGGTGGAGG+AGG - chr4_2:58735901-58735920 Msa0610840:three_prime_UTR 65.0%
CTTCACCCTCCGGTGGAGGA+GGG - chr4_2:58735902-58735921 Msa0610840:three_prime_UTR 65.0%
! TCGGTGCTTCTCCGGCGACA+AGG - chr4_2:58735961-58735980 Msa0610840:three_prime_UTR 65.0%
CGGTGCTTCTCCGGCGACAA+GGG - chr4_2:58735962-58735981 Msa0610840:three_prime_UTR 65.0%
!! CTGAGGCGCTGGACAACTGG+AGG + chr4_2:58739840-58739859 None:intergenic 65.0%
CTCCAGTTGTCCAGCGCCTC+AGG - chr4_2:58739838-58739857 Msa0610840:intron 65.0%
!! CACCTGAGGCGCTGGACAAC+TGG + chr4_2:58739843-58739862 None:intergenic 65.0%
GTGTCCCCTCACCCCACTAG+AGG - chr4_2:58740258-58740277 Msa0610840:intron 65.0%
!! TGCACCGGCTACCGAGCAGC+GGG - chr4_2:58735800-58735819 Msa0610840:three_prime_UTR 70.0%
! GGCGTCGAATGCCCGCTGCT+CGG + chr4_2:58735814-58735833 None:intergenic 70.0%
GGCGACCGGAGCGGAGATTG+CGG + chr4_2:58735844-58735863 None:intergenic 70.0%
CTCCTCCCTCCTCCACCGGA+GGG + chr4_2:58735910-58735929 None:intergenic 70.0%
ACTCCTCCCTCCTCCACCGG+AGG + chr4_2:58735911-58735930 None:intergenic 70.0%
CCTTGGACCGCCCTTGCCGG+AGG + chr4_2:58735870-58735889 None:intergenic 75.0%
CCTCCGGCAAGGGCGGTCCA+AGG - chr4_2:58735867-58735886 Msa0610840:three_prime_UTR 75.0%
CCGCCTTGGACCGCCCTTGC+CGG + chr4_2:58735873-58735892 None:intergenic 75.0%
CCGGCAAGGGCGGTCCAAGG+CGG - chr4_2:58735870-58735889 Msa0610840:three_prime_UTR 75.0%
CGGCAAGGGCGGTCCAAGGC+GGG - chr4_2:58735871-58735890 Msa0610840:three_prime_UTR 75.0%
GGCAAGGGCGGTCCAAGGCG+GGG - chr4_2:58735872-58735891 Msa0610840:three_prime_UTR 75.0%
CACCCTCCGGTGGAGGAGGG+AGG - chr4_2:58735905-58735924 Msa0610840:three_prime_UTR 75.0%
!! CTTGCCGGAGGCGCGGCGAC+CGG + chr4_2:58735858-58735877 None:intergenic 80.0%
! GGTCGCCGCGCCTCCGGCAA+GGG - chr4_2:58735857-58735876 Msa0610840:three_prime_UTR 80.0%
! GACCGCCCTTGCCGGAGGCG+CGG + chr4_2:58735865-58735884 None:intergenic 80.0%
!! CGGAGGCGCGGCGACCGGAG+CGG + chr4_2:58735853-58735872 None:intergenic 85.0%
! CGCTCCGGTCGCCGCGCCTC+CGG - chr4_2:58735851-58735870 Msa0610840:three_prime_UTR 85.0%
! CGGTCGCCGCGCCTCCGGCA+AGG - chr4_2:58735856-58735875 Msa0610840:three_prime_UTR 85.0%
! CGCCGCGCCTCCGGCAAGGG+CGG - chr4_2:58735860-58735879 Msa0610840:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58735575 58741993 58735575 ID=Msa0610840;Name=Msa0610840
chr4_2 mRNA 58735575 58741993 58735575 ID=Msa0610840-mRNA-1;Parent=Msa0610840;Name=Msa0610840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=224|0.88|0.9|1|0.88|1|10|781|558
chr4_2 exon 58735575 58736518 58735575 ID=Msa0610840-mRNA-1:exon:15495;Parent=Msa0610840-mRNA-1
chr4_2 exon 58736655 58736845 58736655 ID=Msa0610840-mRNA-1:exon:15494;Parent=Msa0610840-mRNA-1
chr4_2 exon 58736932 58737099 58736932 ID=Msa0610840-mRNA-1:exon:15493;Parent=Msa0610840-mRNA-1
chr4_2 exon 58737289 58737456 58737289 ID=Msa0610840-mRNA-1:exon:15492;Parent=Msa0610840-mRNA-1
chr4_2 exon 58737573 58737777 58737573 ID=Msa0610840-mRNA-1:exon:15491;Parent=Msa0610840-mRNA-1
chr4_2 exon 58738538 58738726 58738538 ID=Msa0610840-mRNA-1:exon:15490;Parent=Msa0610840-mRNA-1
chr4_2 exon 58738895 58738983 58738895 ID=Msa0610840-mRNA-1:exon:15489;Parent=Msa0610840-mRNA-1
chr4_2 exon 58739080 58739147 58739080 ID=Msa0610840-mRNA-1:exon:15488;Parent=Msa0610840-mRNA-1
chr4_2 exon 58739972 58740041 58739972 ID=Msa0610840-mRNA-1:exon:15487;Parent=Msa0610840-mRNA-1
chr4_2 exon 58741404 58741993 58741404 ID=Msa0610840-mRNA-1:exon:15486;Parent=Msa0610840-mRNA-1
chr4_2 five_prime_UTR 58741770 58741993 58741770 ID=Msa0610840-mRNA-1:five_prime_utr;Parent=Msa0610840-mRNA-1
chr4_2 CDS 58741404 58741769 58741404 ID=Msa0610840-mRNA-1:cds;Parent=Msa0610840-mRNA-1
chr4_2 CDS 58739972 58740041 58739972 ID=Msa0610840-mRNA-1:cds;Parent=Msa0610840-mRNA-1
chr4_2 CDS 58739080 58739147 58739080 ID=Msa0610840-mRNA-1:cds;Parent=Msa0610840-mRNA-1
chr4_2 CDS 58738895 58738983 58738895 ID=Msa0610840-mRNA-1:cds;Parent=Msa0610840-mRNA-1
chr4_2 CDS 58738538 58738726 58738538 ID=Msa0610840-mRNA-1:cds;Parent=Msa0610840-mRNA-1
chr4_2 CDS 58737573 58737777 58737573 ID=Msa0610840-mRNA-1:cds;Parent=Msa0610840-mRNA-1
chr4_2 CDS 58737289 58737456 58737289 ID=Msa0610840-mRNA-1:cds;Parent=Msa0610840-mRNA-1
chr4_2 CDS 58736932 58737099 58736932 ID=Msa0610840-mRNA-1:cds;Parent=Msa0610840-mRNA-1
chr4_2 CDS 58736655 58736845 58736655 ID=Msa0610840-mRNA-1:cds;Parent=Msa0610840-mRNA-1
chr4_2 CDS 58736356 58736518 58736356 ID=Msa0610840-mRNA-1:cds;Parent=Msa0610840-mRNA-1
chr4_2 three_prime_UTR 58735575 58736355 58735575 ID=Msa0610840-mRNA-1:three_prime_utr;Parent=Msa0610840-mRNA-1
Gene Sequence

>Msa0610840

ATGCACCGGCTACCGAGCAGCGGGCATTCGACGCCGTCATCTCCGCAATCTCCGCTCCGGTCGCCGCGCCTCCGGCAAGGGCGGTCCAAGGCGGGGAAATTTTCTTCACCCTCCGGTGGAGGAGGGAGGAGTTTAGCGCAGAGGCTGAGTTGGATGCTGCTTTCGGTGCTTCTCCGGCGACAAGGGATTTTTCTGTTTGCTCCGTTGATTTATATCGCCGGTATGCTTCTTTATATGGGAACGGCGTCGTTTGATGTTGTTCCGATTATTAAACACCGTCCTGCTCCTGGCTCGCTTTATCGTAGTCCTCAGCTTTATTCTAATCTGAAAAAGGATATGGATTCGGATAACTCTTCTACCGATGCGATATCTACAATATGGAGAAGTCCATATAGAGGTGGTGAATGGAAACCATGTGTAAATAGATCTTCAGAAGGTCTACCTGAGTCAAATGGATACATATATGTAGAGGCTAATGGTGGCTTAAATCAGCAAAGGACATCGGTATGCAATGCCGTTGCTGTGGCTGGCTATCTAAACGCTACCCTTGTGATTCCAAACTTCCATTATCATAGTATATGGAAAGATCCTAGGGACATCTACGATGAAGAATATTTTGTCGATATCCTGAAAAATGATGTGCGGGTGGTTGACAAGATTCCTGAGTACCTGATGGAAAGATTTGGCAGCAACATGACAAATGTTCACAATTTCAGGATCAAGGCATGGTCATCCATTCAGTATTATAGAGATGTGGTGCTCCCAAAGCTACTTGAAGAAAAGGTTATAAGAATTTCTCCTTTTGCGAATAGATTGTCCTTTGATGCTCCTCCAGTTGTCCAGCGCCTCAGGTGCTTAGCAAATTACGAGGCTTTACGGTTTTCAAGACCTATTTTGACCATAGGTGAATCTTTGGTTGAAAGAATGAGAGAGCGTAGTGCCGTTAATGGCGGTAAATATGTTTCTGTACATCTTCGTTTTGAAGAGGATATGGTTGCTTTCTCCTGTTGTATTTTTGATGGTGGGAAACAGGAGAAACAAGACATGATTGCTGCAAGAGAAAGAGGTTGGAAAGGGAAATTTACAAAGCCTGGCCGAATCATACGTCCTGGAGCAATCAGGATCAACGGGAAGTGTCCCCTCACCCCACTAGAGGTTGGCCTGATGCTGAGGGGAATGGGTTTTACGAAGAACACATCTATCTTTTTGGCATCTGGAATAATATATAATGCTGAGAAAACAATGGCTCCACTACTACAAATGTTTCCTAATTTGCATACGAAGGAGACTCTGGCTTCTGAAGAGGAACTTTCTACATTTAGGAATTATTCTTCCAGGATGGCTGCTATAGATTACACTGTTTGTCTTCGTAGTGAGGTGTTCGTCACAACCCAGGGTGGTAACTTTCCCCATTTTCTGCTGGGCCACAGAAGATACTTGTATGGTGGACACTCTAAGACAATTAAGCCTGATAAGCGGAAGTTAGCATTGCTCTTTGATAATCCCAATATAGGATGGAGAAGTTTCAAGCGTCAACTGCTGAACATGAGGTCACACAGTGATTCCAAGGGAGTTGAGCTGAAAAGACCAAACGACTCTATATACAGCTTTCCATGTCCAGAATGTATGTGCCGTGCCAATAGAACCGACGATTCAAAATCTTCATCAGCAGCTTGA
Protein sequence

>Msa0610840

MHRLPSSGHSTPSSPQSPLRSPRLRQGRSKAGKFSSPSGGGGRSLAQRLSWMLLSVLLRRQGIFLFAPLIYIAGMLLYMGTASFDVVPIIKHRPAPGSLYRSPQLYSNLKKDMDSDNSSTDAISTIWRSPYRGGEWKPCVNRSSEGLPESNGYIYVEANGGLNQQRTSVCNAVAVAGYLNATLVIPNFHYHSIWKDPRDIYDEEYFVDILKNDVRVVDKIPEYLMERFGSNMTNVHNFRIKAWSSIQYYRDVVLPKLLEEKVIRISPFANRLSFDAPPVVQRLRCLANYEALRFSRPILTIGESLVERMRERSAVNGGKYVSVHLRFEEDMVAFSCCIFDGGKQEKQDMIAARERGWKGKFTKPGRIIRPGAIRINGKCPLTPLEVGLMLRGMGFTKNTSIFLASGIIYNAEKTMAPLLQMFPNLHTKETLASEEELSTFRNYSSRMAAIDYTVCLRSEVFVTTQGGNFPHFLLGHRRYLYGGHSKTIKPDKRKLALLFDNPNIGWRSFKRQLLNMRSHSDSKGVELKRPNDSIYSFPCPECMCRANRTDDSKSSSAA*