Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252010 | XP_003628937.2 | 94.966 | 596 | 30 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252010 | sp|Q9C9V6|Y1790_ARATH | 63.396 | 642 | 177 | 14 | 1 | 596 | 1 | 630 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1252010 | 0.801126 | 1.042926e-48 | -8.615850e-47 |
| Msa0657970 | Msa1252010 | 0.813257 | 2.804684e-51 | -8.615850e-47 |
| Msa0157290 | Msa1252010 | 0.800729 | 1.256943e-48 | -8.615850e-47 |
| Msa1014540 | Msa1252010 | 0.814552 | 1.453515e-51 | -8.615850e-47 |
| Msa1075220 | Msa1252010 | -0.821166 | 4.665188e-53 | -8.615850e-47 |
| Msa1102140 | Msa1252010 | 0.821905 | 3.148297e-53 | -8.615850e-47 |
| Msa1116130 | Msa1252010 | -0.806805 | 6.880974e-50 | -8.615850e-47 |
| Msa1139000 | Msa1252010 | -0.802571 | 5.267522e-49 | -8.615850e-47 |
| Msa1162550 | Msa1252010 | -0.816905 | 4.345739e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252010 | MtrunA17_Chr8g0367891 | 94.966 | 596 | 30 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1115 |
| Msa1252010 | MtrunA17_Chr5g0412591 | 66.041 | 639 | 141 | 11 | 1 | 596 | 1 | 606 | 0.0 | 776 |
| Msa1252010 | MtrunA17_Chr4g0076521 | 46.733 | 505 | 222 | 6 | 1 | 486 | 1 | 477 | 1.93e-150 | 446 |
| Msa1252010 | MtrunA17_Chr5g0401341 | 47.843 | 510 | 215 | 11 | 1 | 485 | 1 | 484 | 1.01e-146 | 437 |
| Msa1252010 | MtrunA17_Chr1g0207461 | 41.308 | 627 | 290 | 15 | 1 | 588 | 1 | 588 | 1.41e-145 | 434 |
| Msa1252010 | MtrunA17_Chr2g0290741 | 46.247 | 493 | 228 | 6 | 1 | 484 | 1 | 465 | 9.53e-140 | 418 |
| Msa1252010 | MtrunA17_Chr1g0150191 | 41.734 | 623 | 295 | 15 | 1 | 596 | 1 | 582 | 9.89e-139 | 417 |
| Msa1252010 | MtrunA17_Chr2g0279481 | 40.109 | 551 | 240 | 10 | 5 | 487 | 23 | 551 | 3.78e-121 | 374 |
| Msa1252010 | MtrunA17_Chr4g0050021 | 39.894 | 564 | 255 | 13 | 5 | 505 | 23 | 565 | 2.05e-120 | 371 |
| Msa1252010 | MtrunA17_Chr2g0303541 | 38.623 | 523 | 258 | 9 | 1 | 482 | 1 | 501 | 4.54e-106 | 333 |
| Msa1252010 | MtrunA17_Chr8g0382231 | 36.550 | 487 | 266 | 7 | 20 | 484 | 46 | 511 | 1.36e-101 | 321 |
| Msa1252010 | MtrunA17_Chr2g0285511 | 37.640 | 534 | 247 | 12 | 1 | 484 | 1 | 498 | 1.91e-97 | 310 |
| Msa1252010 | MtrunA17_Chr1g0181181 | 35.810 | 525 | 284 | 10 | 1 | 501 | 1 | 496 | 4.93e-93 | 296 |
| Msa1252010 | MtrunA17_Chr2g0320691 | 33.813 | 556 | 300 | 12 | 13 | 529 | 10 | 536 | 1.47e-91 | 295 |
| Msa1252010 | MtrunA17_Chr5g0401451 | 35.465 | 516 | 275 | 12 | 21 | 509 | 35 | 519 | 2.34e-89 | 289 |
| Msa1252010 | MtrunA17_Chr7g0245201 | 34.357 | 521 | 293 | 11 | 22 | 517 | 57 | 553 | 8.18e-89 | 288 |
| Msa1252010 | MtrunA17_Chr7g0268781 | 35.676 | 555 | 312 | 13 | 24 | 555 | 34 | 566 | 3.27e-86 | 281 |
| Msa1252010 | MtrunA17_Chr1g0195911 | 37.372 | 487 | 267 | 11 | 24 | 490 | 34 | 502 | 3.67e-86 | 280 |
| Msa1252010 | MtrunA17_Chr8g0374011 | 33.094 | 556 | 280 | 12 | 21 | 507 | 15 | 547 | 3.77e-86 | 281 |
| Msa1252010 | MtrunA17_Chr4g0010091 | 36.240 | 516 | 282 | 9 | 25 | 518 | 33 | 523 | 1.67e-85 | 278 |
| Msa1252010 | MtrunA17_Chr4g0053841 | 34.200 | 500 | 275 | 10 | 23 | 498 | 10 | 479 | 4.78e-80 | 263 |
| Msa1252010 | MtrunA17_Chr1g0199631 | 34.468 | 470 | 260 | 8 | 44 | 484 | 8 | 458 | 7.38e-80 | 262 |
| Msa1252010 | MtrunA17_Chr3g0108331 | 33.735 | 498 | 282 | 10 | 21 | 504 | 19 | 482 | 1.22e-73 | 246 |
| Msa1252010 | MtrunA17_Chr5g0432861 | 32.857 | 490 | 274 | 9 | 21 | 489 | 20 | 475 | 4.07e-69 | 234 |
| Msa1252010 | MtrunA17_Chr1g0191711 | 32.421 | 475 | 250 | 12 | 27 | 483 | 59 | 480 | 5.99e-69 | 233 |
| Msa1252010 | MtrunA17_Chr4g0003891 | 32.448 | 339 | 176 | 6 | 163 | 484 | 11 | 313 | 7.66e-48 | 173 |
| Msa1252010 | MtrunA17_Chr2g0332281 | 34.426 | 305 | 146 | 5 | 199 | 484 | 24 | 293 | 6.40e-44 | 162 |
| Msa1252010 | MtrunA17_Chr4g0037661 | 24.851 | 503 | 293 | 11 | 27 | 484 | 4 | 466 | 1.03e-39 | 152 |
| Msa1252010 | MtrunA17_Chr4g0023801 | 27.231 | 437 | 247 | 12 | 73 | 484 | 52 | 442 | 5.33e-37 | 145 |
| Msa1252010 | MtrunA17_Chr1g0163311 | 25.813 | 492 | 266 | 14 | 39 | 482 | 17 | 457 | 2.64e-36 | 142 |
| Msa1252010 | MtrunA17_Chr1g0206621 | 38.971 | 136 | 82 | 1 | 33 | 167 | 75 | 210 | 5.96e-24 | 100 |
| Msa1252010 | MtrunA17_Chr4g0041491 | 56.923 | 65 | 28 | 0 | 1 | 65 | 1 | 65 | 3.28e-19 | 82.0 |
| Msa1252010 | MtrunA17_Chr2g0280541 | 25.189 | 397 | 224 | 12 | 101 | 470 | 8 | 358 | 8.87e-18 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252010 | AT1G67900.5 | 63.396 | 642 | 177 | 14 | 1 | 596 | 1 | 630 | 0.0 | 712 |
| Msa1252010 | AT1G67900.1 | 63.396 | 642 | 177 | 14 | 1 | 596 | 1 | 630 | 0.0 | 712 |
| Msa1252010 | AT1G67900.3 | 63.396 | 642 | 177 | 14 | 1 | 596 | 1 | 630 | 0.0 | 712 |
| Msa1252010 | AT1G67900.6 | 63.396 | 642 | 177 | 14 | 1 | 596 | 1 | 630 | 0.0 | 712 |
| Msa1252010 | AT1G67900.2 | 63.396 | 642 | 177 | 14 | 1 | 596 | 1 | 630 | 0.0 | 712 |
| Msa1252010 | AT1G67900.4 | 63.396 | 642 | 177 | 14 | 1 | 596 | 1 | 630 | 0.0 | 712 |
| Msa1252010 | AT3G26490.1 | 47.310 | 632 | 251 | 16 | 1 | 595 | 1 | 587 | 3.91e-180 | 522 |
| Msa1252010 | AT3G26490.3 | 47.310 | 632 | 251 | 16 | 1 | 595 | 1 | 587 | 3.91e-180 | 522 |
| Msa1252010 | AT3G26490.4 | 47.310 | 632 | 251 | 16 | 1 | 595 | 1 | 587 | 3.91e-180 | 522 |
| Msa1252010 | AT3G26490.2 | 51.592 | 471 | 177 | 13 | 1 | 434 | 1 | 457 | 5.98e-148 | 437 |
| Msa1252010 | AT2G14820.2 | 43.595 | 523 | 239 | 9 | 1 | 493 | 1 | 497 | 4.55e-140 | 421 |
| Msa1252010 | AT2G14820.1 | 43.595 | 523 | 239 | 9 | 1 | 493 | 1 | 497 | 4.55e-140 | 421 |
| Msa1252010 | AT5G47800.3 | 42.913 | 508 | 245 | 9 | 1 | 490 | 1 | 481 | 1.58e-137 | 412 |
| Msa1252010 | AT5G47800.1 | 42.913 | 508 | 245 | 9 | 1 | 490 | 1 | 481 | 1.58e-137 | 412 |
| Msa1252010 | AT5G47800.4 | 42.913 | 508 | 245 | 9 | 1 | 490 | 1 | 481 | 1.58e-137 | 412 |
| Msa1252010 | AT5G47800.2 | 42.913 | 508 | 245 | 9 | 1 | 490 | 114 | 594 | 4.73e-136 | 412 |
| Msa1252010 | AT4G37590.1 | 39.145 | 608 | 287 | 13 | 1 | 587 | 1 | 546 | 5.43e-133 | 401 |
| Msa1252010 | AT4G31820.1 | 42.718 | 515 | 243 | 10 | 1 | 498 | 1 | 480 | 1.51e-128 | 389 |
| Msa1252010 | AT5G67440.3 | 41.847 | 509 | 244 | 9 | 1 | 487 | 1 | 479 | 3.47e-125 | 381 |
| Msa1252010 | AT5G67440.1 | 41.847 | 509 | 244 | 9 | 1 | 487 | 1 | 479 | 3.47e-125 | 381 |
| Msa1252010 | AT2G23050.1 | 42.495 | 513 | 211 | 12 | 1 | 489 | 1 | 453 | 8.10e-120 | 363 |
| Msa1252010 | AT4G31820.2 | 37.500 | 560 | 262 | 13 | 53 | 595 | 1 | 489 | 1.85e-111 | 343 |
| Msa1252010 | AT5G67440.2 | 41.026 | 468 | 225 | 8 | 41 | 487 | 5 | 442 | 5.42e-109 | 338 |
| Msa1252010 | AT1G30440.1 | 37.405 | 524 | 268 | 11 | 1 | 482 | 1 | 506 | 4.13e-100 | 318 |
| Msa1252010 | AT5G03250.1 | 36.329 | 523 | 273 | 12 | 1 | 484 | 1 | 502 | 1.33e-92 | 296 |
| Msa1252010 | AT5G13600.1 | 36.812 | 527 | 256 | 13 | 1 | 484 | 1 | 493 | 3.80e-91 | 293 |
| Msa1252010 | AT5G67385.1 | 35.341 | 498 | 258 | 10 | 23 | 494 | 22 | 481 | 8.97e-90 | 290 |
| Msa1252010 | AT5G10250.2 | 33.977 | 518 | 248 | 10 | 13 | 484 | 37 | 506 | 3.70e-84 | 275 |
| Msa1252010 | AT5G48800.1 | 36.383 | 481 | 257 | 7 | 25 | 488 | 40 | 488 | 1.68e-83 | 273 |
| Msa1252010 | AT5G10250.1 | 35.271 | 499 | 252 | 11 | 13 | 484 | 37 | 491 | 2.76e-82 | 270 |
| Msa1252010 | AT3G08660.1 | 35.031 | 491 | 260 | 13 | 8 | 484 | 21 | 466 | 9.65e-82 | 268 |
| Msa1252010 | AT1G03010.2 | 36.550 | 487 | 266 | 10 | 24 | 484 | 7 | 476 | 1.06e-81 | 268 |
| Msa1252010 | AT2G47860.1 | 35.967 | 481 | 267 | 11 | 24 | 484 | 35 | 494 | 1.23e-81 | 269 |
| Msa1252010 | AT1G03010.1 | 36.550 | 487 | 266 | 10 | 24 | 484 | 34 | 503 | 2.42e-81 | 268 |
| Msa1252010 | AT1G03010.3 | 36.550 | 487 | 266 | 10 | 24 | 484 | 33 | 502 | 3.71e-81 | 268 |
| Msa1252010 | AT3G44820.1 | 34.156 | 527 | 279 | 9 | 13 | 490 | 10 | 517 | 1.18e-80 | 267 |
| Msa1252010 | AT5G67385.4 | 33.895 | 475 | 248 | 10 | 47 | 494 | 1 | 436 | 2.23e-80 | 264 |
| Msa1252010 | AT5G67385.5 | 33.895 | 475 | 248 | 10 | 47 | 494 | 1 | 436 | 2.23e-80 | 264 |
| Msa1252010 | AT5G67385.2 | 33.895 | 475 | 248 | 10 | 47 | 494 | 1 | 436 | 2.23e-80 | 264 |
| Msa1252010 | AT5G67385.3 | 33.895 | 475 | 248 | 10 | 47 | 494 | 1 | 436 | 2.23e-80 | 264 |
| Msa1252010 | AT3G08570.1 | 35.815 | 497 | 268 | 14 | 12 | 484 | 21 | 490 | 4.14e-80 | 265 |
| Msa1252010 | AT2G23050.2 | 40.806 | 397 | 156 | 9 | 112 | 489 | 1 | 337 | 4.14e-78 | 252 |
| Msa1252010 | AT2G47860.3 | 34.325 | 504 | 267 | 12 | 24 | 484 | 35 | 517 | 1.35e-76 | 256 |
| Msa1252010 | AT3G49970.1 | 34.763 | 443 | 218 | 10 | 39 | 467 | 7 | 392 | 1.05e-74 | 248 |
| Msa1252010 | AT3G49970.2 | 34.763 | 443 | 218 | 10 | 39 | 467 | 7 | 392 | 1.05e-74 | 248 |
| Msa1252010 | AT3G08660.3 | 35.499 | 431 | 226 | 11 | 68 | 484 | 14 | 406 | 3.60e-72 | 241 |
| Msa1252010 | AT5G66560.1 | 31.927 | 545 | 254 | 13 | 23 | 482 | 16 | 528 | 1.28e-70 | 240 |
| Msa1252010 | AT5G66560.3 | 32.136 | 529 | 242 | 13 | 39 | 482 | 3 | 499 | 8.09e-69 | 235 |
| Msa1252010 | AT2G30520.1 | 33.678 | 484 | 270 | 12 | 21 | 488 | 25 | 473 | 4.63e-68 | 232 |
| Msa1252010 | AT5G66560.4 | 34.430 | 456 | 225 | 11 | 69 | 482 | 66 | 489 | 4.96e-68 | 233 |
| Msa1252010 | AT3G50840.1 | 32.172 | 488 | 260 | 9 | 23 | 482 | 13 | 457 | 1.58e-65 | 224 |
| Msa1252010 | AT2G30520.2 | 33.987 | 459 | 252 | 12 | 46 | 488 | 2 | 425 | 1.04e-61 | 214 |
| Msa1252010 | AT2G30520.3 | 33.987 | 459 | 252 | 12 | 46 | 488 | 2 | 425 | 1.04e-61 | 214 |
| Msa1252010 | AT3G08660.2 | 32.710 | 428 | 234 | 12 | 22 | 435 | 30 | 417 | 2.45e-61 | 209 |
| Msa1252010 | AT2G47860.4 | 33.721 | 430 | 244 | 11 | 24 | 433 | 35 | 443 | 2.18e-59 | 205 |
| Msa1252010 | AT5G64330.3 | 44.444 | 279 | 139 | 4 | 260 | 526 | 316 | 590 | 1.83e-58 | 206 |
| Msa1252010 | AT5G64330.3 | 38.362 | 232 | 113 | 4 | 39 | 242 | 6 | 235 | 1.15e-42 | 162 |
| Msa1252010 | AT3G50840.2 | 31.681 | 464 | 246 | 9 | 47 | 482 | 1 | 421 | 1.85e-58 | 204 |
| Msa1252010 | AT3G50840.3 | 31.681 | 464 | 246 | 9 | 47 | 482 | 1 | 421 | 1.85e-58 | 204 |
| Msa1252010 | AT5G64330.2 | 44.444 | 279 | 139 | 4 | 260 | 526 | 375 | 649 | 5.17e-58 | 206 |
| Msa1252010 | AT5G64330.2 | 37.121 | 264 | 136 | 4 | 7 | 242 | 33 | 294 | 8.01e-49 | 181 |
| Msa1252010 | AT5G64330.1 | 48.718 | 234 | 108 | 2 | 260 | 484 | 375 | 605 | 6.49e-58 | 207 |
| Msa1252010 | AT5G64330.1 | 37.121 | 264 | 136 | 4 | 7 | 242 | 33 | 294 | 1.77e-48 | 181 |
| Msa1252010 | AT5G03250.2 | 33.820 | 411 | 213 | 11 | 112 | 484 | 1 | 390 | 5.46e-55 | 194 |
| Msa1252010 | AT2G47860.6 | 32.009 | 453 | 244 | 12 | 24 | 433 | 35 | 466 | 1.31e-54 | 192 |
| Msa1252010 | AT2G47860.5 | 34.097 | 393 | 222 | 10 | 112 | 484 | 1 | 376 | 5.36e-53 | 189 |
| Msa1252010 | AT2G47860.2 | 34.097 | 393 | 222 | 10 | 112 | 484 | 1 | 376 | 5.36e-53 | 189 |
| Msa1252010 | AT5G66560.2 | 28.427 | 496 | 238 | 12 | 23 | 433 | 16 | 479 | 5.94e-47 | 172 |
| Msa1252010 | AT1G52770.1 | 33.762 | 311 | 146 | 5 | 199 | 484 | 28 | 303 | 1.47e-44 | 165 |
| Msa1252010 | AT5G48130.1 | 27.594 | 453 | 268 | 13 | 51 | 482 | 54 | 467 | 2.44e-43 | 164 |
| Msa1252010 | AT3G19850.1 | 26.754 | 456 | 250 | 10 | 68 | 482 | 51 | 463 | 6.03e-43 | 162 |
| Msa1252010 | AT3G15570.1 | 31.046 | 306 | 147 | 6 | 208 | 484 | 38 | 308 | 1.32e-38 | 148 |
| Msa1252010 | AT3G03510.1 | 30.144 | 418 | 214 | 12 | 81 | 484 | 8 | 361 | 3.25e-38 | 147 |
| Msa1252010 | AT1G50280.2 | 24.888 | 446 | 263 | 12 | 69 | 478 | 18 | 427 | 3.59e-33 | 133 |
| Msa1252010 | AT1G50280.1 | 24.888 | 446 | 263 | 12 | 69 | 478 | 51 | 460 | 3.61e-33 | 134 |
| Msa1252010 | AT5G17580.2 | 24.498 | 498 | 281 | 10 | 22 | 482 | 16 | 455 | 8.86e-29 | 121 |
| Msa1252010 | AT5G17580.1 | 24.498 | 498 | 281 | 10 | 22 | 482 | 1 | 440 | 1.35e-28 | 120 |
| Msa1252010 | AT3G22104.1 | 24.894 | 470 | 266 | 13 | 28 | 467 | 6 | 418 | 1.78e-27 | 116 |
| Msa1252010 | AT3G22104.4 | 24.181 | 397 | 216 | 12 | 99 | 467 | 4 | 343 | 3.09e-18 | 87.8 |
| Msa1252010 | AT3G22104.2 | 24.181 | 397 | 216 | 12 | 99 | 467 | 4 | 343 | 3.09e-18 | 87.8 |
| Msa1252010 | AT3G22104.3 | 24.181 | 397 | 216 | 12 | 99 | 467 | 4 | 343 | 3.09e-18 | 87.8 |
| Msa1252010 | AT3G49900.1 | 38.144 | 97 | 53 | 4 | 388 | 482 | 214 | 305 | 2.07e-11 | 67.0 |
Find 79 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAAAAGCATTGTCTTTA+TGG | 0.066371 | 8_2:+48734417 | Msa1252010:CDS |
| AATTGAAAATTGATCTTTAT+TGG | 0.119941 | 8_2:+48734594 | Msa1252010:CDS |
| GGTAGAAGTTCTAGATTTAA+AGG | 0.171224 | 8_2:+48736757 | Msa1252010:CDS |
| TTAGGAATATTAATATTAAT+TGG | 0.171969 | 8_2:-48733557 | None:intergenic |
| CGCATCACCGATGAGATTTA+AGG | 0.190125 | 8_2:-48734654 | None:intergenic |
| AATGGTAAATTATTAAATTT+AGG | 0.192741 | 8_2:+48736898 | Msa1252010:three_prime_UTR |
| TAAAGATTGAATTGGTTAAA+AGG | 0.192920 | 8_2:+48734870 | Msa1252010:CDS |
| AAAGCATTACTCACTTCTTA+TGG | 0.250927 | 8_2:+48736568 | Msa1252010:CDS |
| ATCCTAAGAGTTGTGTTCTT+TGG | 0.273330 | 8_2:-48736679 | None:intergenic |
| AGTGATAATTGGAGTGTTAA+TGG | 0.286291 | 8_2:+48736646 | Msa1252010:CDS |
| AATAATAAGTGGTTTAAATA+AGG | 0.290247 | 8_2:-48733453 | None:intergenic |
| TAATATTAATTGGAAACTTT+AGG | 0.299033 | 8_2:-48733547 | None:intergenic |
| TTCTTCTCCGCCAGGAAAAT+CGG | 0.327860 | 8_2:-48734195 | None:intergenic |
| GTATACATGCTAGTGATAAT+TGG | 0.330908 | 8_2:+48736635 | Msa1252010:CDS |
| TTTAGATGAGAATAATGATT+TGG | 0.349387 | 8_2:+48736720 | Msa1252010:CDS |
| ATGGTAAATTATTAAATTTA+GGG | 0.361165 | 8_2:+48736899 | Msa1252010:three_prime_UTR |
| TGATCACATCTTGCAAATTC+AGG | 0.365444 | 8_2:-48735220 | None:intergenic |
| GATGGTTTATGATGTGGATT+TGG | 0.369525 | 8_2:+48734934 | Msa1252010:CDS |
| TTCTGATTCAAGAAATGAAA+TGG | 0.375253 | 8_2:+48734721 | Msa1252010:CDS |
| TGAAAATTTATGCATCTAGA+TGG | 0.375668 | 8_2:+48734678 | Msa1252010:CDS |
| AAAGATTGAATTGGTTAAAA+GGG | 0.381224 | 8_2:+48734871 | Msa1252010:CDS |
| GATCTTTGAGGACTAGTTGA+TGG | 0.386359 | 8_2:-48735001 | None:intergenic |
| TTCGTCTTTAAAGATTGAAT+TGG | 0.388008 | 8_2:+48734862 | Msa1252010:CDS |
| AAAGCGACCCTTGATCTTTG+AGG | 0.388135 | 8_2:-48735013 | None:intergenic |
| TCTTCAGTGTAGAAGATATC+AGG | 0.393309 | 8_2:-48733690 | None:intergenic |
| TCTTCTCCGCCAGGAAAATC+GGG | 0.399053 | 8_2:-48734194 | None:intergenic |
| ATTGAATTGGTTAAAAGGGT+TGG | 0.400803 | 8_2:+48734875 | Msa1252010:CDS |
| CACCAAAGAACACAACTCTT+AGG | 0.411043 | 8_2:+48736677 | Msa1252010:CDS |
| GGATTTGGTGATGAACATAT+TGG | 0.412592 | 8_2:+48734949 | Msa1252010:CDS |
| TTTGATGTTGCTTGATATGT+TGG | 0.426071 | 8_2:-48736548 | None:intergenic |
| TGAACGGAGGAGGTCGCGTT+CGG | 0.435095 | 8_2:+48735036 | Msa1252010:CDS |
| AATAATGATTTGGCAATCAA+TGG | 0.435234 | 8_2:+48736730 | Msa1252010:CDS |
| AATGACAGAAGATGCAGAAA+AGG | 0.437327 | 8_2:+48734313 | Msa1252010:CDS |
| CTTGCTCAAAGAAGAGAACT+TGG | 0.439895 | 8_2:-48736495 | None:intergenic |
| GCATCTACAAAGATTATGTT+CGG | 0.448023 | 8_2:+48734133 | Msa1252010:CDS |
| ACTTGGACTACAAGTCTTAG+TGG | 0.452468 | 8_2:-48736478 | None:intergenic |
| TTCAATTCTTGCATACTTCG+CGG | 0.453877 | 8_2:+48734365 | Msa1252010:CDS |
| GCATCACCGATGAGATTTAA+GGG | 0.457011 | 8_2:-48734653 | None:intergenic |
| CAACTAGTCCTCAAAGATCA+AGG | 0.461346 | 8_2:+48735005 | Msa1252010:CDS |
| CAACTTTCAAAAGCTTAAGA+AGG | 0.470127 | 8_2:-48734820 | None:intergenic |
| TTCACATAGCTCAAAGTTGA+AGG | 0.475267 | 8_2:+48735108 | Msa1252010:CDS |
| ATTCTTGCATACTTCGCGGT+TGG | 0.487286 | 8_2:+48734369 | Msa1252010:CDS |
| TCAAATGCTTCTTCTCCGCC+AGG | 0.488956 | 8_2:-48734203 | None:intergenic |
| AACAGTGAATGATCTTATGA+TGG | 0.493355 | 8_2:+48734916 | Msa1252010:CDS |
| GATTTGGCAATCAATGGAAC+TGG | 0.496479 | 8_2:+48736736 | Msa1252010:CDS |
| AAGATATAGAAATGACAAGA+GGG | 0.498748 | 8_2:-48733510 | None:intergenic |
| CAAGCTAGAGCTGCATCAAA+TGG | 0.498776 | 8_2:+48736514 | Msa1252010:CDS |
| TTCTGTCATTTGTAAATACT+CGG | 0.506028 | 8_2:-48734300 | None:intergenic |
| CTTTGTGCAAAATTCTGCTA+CGG | 0.516764 | 8_2:+48734227 | Msa1252010:CDS |
| AATTTGCTTCCATCTGCAAA+AGG | 0.521044 | 8_2:+48734779 | Msa1252010:CDS |
| TAAGGATGTGAATTTGCCTC+TGG | 0.529241 | 8_2:+48735168 | Msa1252010:CDS |
| AAAGAATGTTTAGTAAGTTG+TGG | 0.533338 | 8_2:+48736806 | Msa1252010:CDS |
| TCTACACTGAAGACTCAGTC+AGG | 0.537198 | 8_2:+48733700 | Msa1252010:CDS |
| ATGACAGAAGATGCAGAAAA+GGG | 0.537658 | 8_2:+48734314 | Msa1252010:CDS |
| AGCATGCATACATGATGAAA+TGG | 0.537779 | 8_2:-48736437 | None:intergenic |
| TCGAACCCTCTTTAACACCT+TGG | 0.539834 | 8_2:-48734486 | None:intergenic |
| GAAGATATAGAAATGACAAG+AGG | 0.543924 | 8_2:-48733511 | None:intergenic |
| AGCATTGTCTTTATGGTCAG+AGG | 0.543953 | 8_2:+48734424 | Msa1252010:CDS |
| TCTTATGATGGTTTATGATG+TGG | 0.561068 | 8_2:+48734928 | Msa1252010:CDS |
| TGGTAAATTATTAAATTTAG+GGG | 0.561588 | 8_2:+48736900 | Msa1252010:three_prime_UTR |
| TTTCTCCAAGGTGTTAAAGA+GGG | 0.565678 | 8_2:+48734481 | Msa1252010:CDS |
| GTATCTTCAAGAAGTTGCTA+AGG | 0.566415 | 8_2:+48735150 | Msa1252010:CDS |
| AAGGGTTGGACTTCAATTCG+AGG | 0.570112 | 8_2:+48734889 | Msa1252010:CDS |
| GGTAAATTATTAAATTTAGG+GGG | 0.580263 | 8_2:+48736901 | Msa1252010:three_prime_UTR |
| TGCTATTGATACTTATCTCA+AGG | 0.587928 | 8_2:+48735258 | Msa1252010:CDS |
| CACTAGATATCTTCTTCACA+AGG | 0.591191 | 8_2:+48733875 | Msa1252010:CDS |
| ATACTCGGCAGCGCATCTTG+CGG | 0.591671 | 8_2:-48734285 | None:intergenic |
| GATCTTATAATTCAAGTGAA+AGG | 0.592130 | 8_2:+48733852 | Msa1252010:CDS |
| AAAATGCCCTTAAATCTCAT+CGG | 0.617431 | 8_2:+48734647 | Msa1252010:CDS |
| AACTAGTCCTCAAAGATCAA+GGG | 0.617568 | 8_2:+48735006 | Msa1252010:CDS |
| TAAGTGGTTTAAATAAGGAG+TGG | 0.630504 | 8_2:-48733448 | None:intergenic |
| GTCATGAAGTTTATGAAACT+AGG | 0.630611 | 8_2:+48733660 | Msa1252010:exon |
| GATGATGATATATCTTGTAG+TGG | 0.640079 | 8_2:+48734512 | Msa1252010:CDS |
| ACATAGCTCAAAGTTGAAGG+TGG | 0.640709 | 8_2:+48735111 | Msa1252010:CDS |
| GCTAGAGCTGCATCAAATGG+TGG | 0.658246 | 8_2:+48736517 | Msa1252010:CDS |
| TCTTAGGATGAAACTAGCTG+AGG | 0.672843 | 8_2:+48736693 | Msa1252010:CDS |
| CTTCTCCGCCAGGAAAATCG+GGG | 0.674735 | 8_2:-48734193 | None:intergenic |
| CAGAACTCGACAAAACCGAA+AGG | 0.691834 | 8_2:+48736377 | Msa1252010:CDS |
| ATAGCAACAAACTTATCCAG+AGG | 0.695224 | 8_2:-48735184 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGGAATATTAATATTAAT+TGG | - | chr8_2:48733560-48733579 | None:intergenic | 10.0% |
| !! | TAATATGTGATAATATAAAT+AGG | - | chr8_2:48733753-48733772 | None:intergenic | 10.0% |
| !!! | ATTTTTCTGAAAAAAAAAAT+GGG | - | chr8_2:48734016-48734035 | None:intergenic | 10.0% |
| !!! | AATTTTTCTGAAAAAAAAAA+TGG | - | chr8_2:48734017-48734036 | None:intergenic | 10.0% |
| !! | AATGGTAAATTATTAAATTT+AGG | + | chr8_2:48736898-48736917 | Msa1252010:three_prime_UTR | 10.0% |
| !! | ATGGTAAATTATTAAATTTA+GGG | + | chr8_2:48736899-48736918 | Msa1252010:three_prime_UTR | 10.0% |
| !! | AATAATAAGTGGTTTAAATA+AGG | - | chr8_2:48733456-48733475 | None:intergenic | 15.0% |
| !! | TAATATTAATTGGAAACTTT+AGG | - | chr8_2:48733550-48733569 | None:intergenic | 15.0% |
| !!! | GTAAAGTTTTATAAAATGTT+AGG | - | chr8_2:48733578-48733597 | None:intergenic | 15.0% |
| !!! | TTTATTTTCTTTGTATATTC+AGG | + | chr8_2:48733805-48733824 | Msa1252010:intron | 15.0% |
| !! | AATTGAAAATTGATCTTTAT+TGG | + | chr8_2:48734594-48734613 | Msa1252010:CDS | 15.0% |
| !!! | ATATTTTCTCAAATTATTAC+CGG | - | chr8_2:48735375-48735394 | None:intergenic | 15.0% |
| !! | ATATTCTCAAATAACAAAAT+AGG | + | chr8_2:48735740-48735759 | Msa1252010:intron | 15.0% |
| !!! | TAGTTTTCTTTTTTAAACTA+CGG | - | chr8_2:48736046-48736065 | None:intergenic | 15.0% |
| !! | TGGTAAATTATTAAATTTAG+GGG | + | chr8_2:48736900-48736919 | Msa1252010:three_prime_UTR | 15.0% |
| !!! | GTATTTTTTTTTGTTGTAAA+AGG | + | chr8_2:48736938-48736957 | Msa1252010:three_prime_UTR | 15.0% |
| !! | ATAAATCAGTAAGAAAAAGA+TGG | + | chr8_2:48734552-48734571 | Msa1252010:CDS | 20.0% |
| !! | TAAAGATTGAATTGGTTAAA+AGG | + | chr8_2:48734870-48734889 | Msa1252010:CDS | 20.0% |
| !! | AAAGATTGAATTGGTTAAAA+GGG | + | chr8_2:48734871-48734890 | Msa1252010:CDS | 20.0% |
| !! | ATGATAAAGACAATACTTTA+AGG | - | chr8_2:48735586-48735605 | None:intergenic | 20.0% |
| !! | AATAAAACTTAACTTCTAGT+GGG | - | chr8_2:48735636-48735655 | None:intergenic | 20.0% |
| !!! | CACTTTTCATTTTTAAACTA+CGG | + | chr8_2:48735917-48735936 | Msa1252010:intron | 20.0% |
| !!! | TTTGTTTGTCTAAAATTTTC+AGG | + | chr8_2:48736348-48736367 | Msa1252010:intron | 20.0% |
| !! | TTTAGATGAGAATAATGATT+TGG | + | chr8_2:48736720-48736739 | Msa1252010:CDS | 20.0% |
| !!! | AACTTACTAAACATTCTTTT+AGG | - | chr8_2:48736805-48736824 | None:intergenic | 20.0% |
| !!! | TTCTTTCAAATTTTTCAGTA+TGG | + | chr8_2:48736874-48736893 | Msa1252010:three_prime_UTR | 20.0% |
| !!! | TCTTTCAAATTTTTCAGTAT+GGG | + | chr8_2:48736875-48736894 | Msa1252010:three_prime_UTR | 20.0% |
| !! | GGTAAATTATTAAATTTAGG+GGG | + | chr8_2:48736901-48736920 | Msa1252010:three_prime_UTR | 20.0% |
| ! | TGGGAACAAAAAATAATAAG+TGG | - | chr8_2:48733467-48733486 | None:intergenic | 25.0% |
| !!! | AAAAACAAGAAGTTTGTTGT+GGG | - | chr8_2:48733486-48733505 | None:intergenic | 25.0% |
| !!! | TAAAAACAAGAAGTTTGTTG+TGG | - | chr8_2:48733487-48733506 | None:intergenic | 25.0% |
| ! | AAGATATAGAAATGACAAGA+GGG | - | chr8_2:48733513-48733532 | None:intergenic | 25.0% |
| ! | GATCTTATAATTCAAGTGAA+AGG | + | chr8_2:48733852-48733871 | Msa1252010:CDS | 25.0% |
| !! | TTCTGTCATTTGTAAATACT+CGG | - | chr8_2:48734303-48734322 | None:intergenic | 25.0% |
| ! | TGAAAATTTATGCATCTAGA+TGG | + | chr8_2:48734678-48734697 | Msa1252010:CDS | 25.0% |
| ! | TTCTGATTCAAGAAATGAAA+TGG | + | chr8_2:48734721-48734740 | Msa1252010:CDS | 25.0% |
| !! | TTCGTCTTTAAAGATTGAAT+TGG | + | chr8_2:48734862-48734881 | Msa1252010:CDS | 25.0% |
| ! | TATTACCGGTATTTATATGT+CGG | - | chr8_2:48735361-48735380 | None:intergenic | 25.0% |
| ! | TTAATGTTACACACTGATAT+GGG | + | chr8_2:48735431-48735450 | Msa1252010:intron | 25.0% |
| ! | CAATAAAACTTAACTTCTAG+TGG | - | chr8_2:48735637-48735656 | None:intergenic | 25.0% |
| ! | ATAAATGGTCAAAATCTAAC+AGG | - | chr8_2:48735688-48735707 | None:intergenic | 25.0% |
| ! | ATCATTGTTAGATGCATAAA+TGG | - | chr8_2:48735703-48735722 | None:intergenic | 25.0% |
| ! | ATCTAACAATGATTGAAGTT+TGG | + | chr8_2:48735710-48735729 | Msa1252010:intron | 25.0% |
| ! | TTGGTTGTTAGATGATTAAT+TGG | - | chr8_2:48735778-48735797 | None:intergenic | 25.0% |
| ! | AACAACCAAGATATGTAATT+TGG | + | chr8_2:48735789-48735808 | Msa1252010:intron | 25.0% |
| ! | AACATCCAAATTACATATCT+TGG | - | chr8_2:48735797-48735816 | None:intergenic | 25.0% |
| ! | ACACGATCTAAATTTAATGA+TGG | - | chr8_2:48736187-48736206 | None:intergenic | 25.0% |
| !! | TTACAAACTGATGATTTTGT+AGG | - | chr8_2:48736219-48736238 | None:intergenic | 25.0% |
| !! | AATAATGATTTGGCAATCAA+TGG | + | chr8_2:48736730-48736749 | Msa1252010:CDS | 25.0% |
| !!! | AACATTCTTTTAGGTTTAGT+AGG | - | chr8_2:48736796-48736815 | None:intergenic | 25.0% |
| ! | AAAGAATGTTTAGTAAGTTG+TGG | + | chr8_2:48736806-48736825 | Msa1252010:CDS | 25.0% |
| TAAGTGGTTTAAATAAGGAG+TGG | - | chr8_2:48733451-48733470 | None:intergenic | 30.0% | |
| GAAGATATAGAAATGACAAG+AGG | - | chr8_2:48733514-48733533 | None:intergenic | 30.0% | |
| GTCATGAAGTTTATGAAACT+AGG | + | chr8_2:48733660-48733679 | Msa1252010:exon | 30.0% | |
| GCATCTACAAAGATTATGTT+CGG | + | chr8_2:48734133-48734152 | Msa1252010:CDS | 30.0% | |
| GATGATGATATATCTTGTAG+TGG | + | chr8_2:48734512-48734531 | Msa1252010:CDS | 30.0% | |
| AATCAGTAAGAAAAAGATGG+TGG | + | chr8_2:48734555-48734574 | Msa1252010:CDS | 30.0% | |
| ATCAGTAAGAAAAAGATGGT+GGG | + | chr8_2:48734556-48734575 | Msa1252010:CDS | 30.0% | |
| AAAATGCCCTTAAATCTCAT+CGG | + | chr8_2:48734647-48734666 | Msa1252010:CDS | 30.0% | |
| CAACTTTCAAAAGCTTAAGA+AGG | - | chr8_2:48734823-48734842 | None:intergenic | 30.0% | |
| ATTGAATTGGTTAAAAGGGT+TGG | + | chr8_2:48734875-48734894 | Msa1252010:CDS | 30.0% | |
| AACAGTGAATGATCTTATGA+TGG | + | chr8_2:48734916-48734935 | Msa1252010:CDS | 30.0% | |
| TCTTATGATGGTTTATGATG+TGG | + | chr8_2:48734928-48734947 | Msa1252010:CDS | 30.0% | |
| TGCTATTGATACTTATCTCA+AGG | + | chr8_2:48735258-48735277 | Msa1252010:CDS | 30.0% | |
| ATCAGTGTGTAACATTAACA+CGG | - | chr8_2:48735429-48735448 | None:intergenic | 30.0% | |
| GTTAATGTTACACACTGATA+TGG | + | chr8_2:48735430-48735449 | Msa1252010:intron | 30.0% | |
| CCACAATATGTTTCATTTGT+GGG | + | chr8_2:48735534-48735553 | Msa1252010:intron | 30.0% | |
| ! | TGTCTTTATCATCTTTTTCC+TGG | + | chr8_2:48735594-48735613 | Msa1252010:intron | 30.0% |
| ! | TATCATCTTTTTCCTGGTTT+AGG | + | chr8_2:48735600-48735619 | Msa1252010:intron | 30.0% |
| CAAAATCTAACAGGAAAGTT+TGG | - | chr8_2:48735679-48735698 | None:intergenic | 30.0% | |
| TATAAGTGTGTTTGGATTGA+GGG | - | chr8_2:48736096-48736115 | None:intergenic | 30.0% | |
| TTATAAGTGTGTTTGGATTG+AGG | - | chr8_2:48736097-48736116 | None:intergenic | 30.0% | |
| TGGTACTTTATAAGTGTGTT+TGG | - | chr8_2:48736104-48736123 | None:intergenic | 30.0% | |
| ATCAAAGCTTATTCAGGATT+AGG | - | chr8_2:48736163-48736182 | None:intergenic | 30.0% | |
| ATGGAAATGTGTCAAAAAGT+GGG | - | chr8_2:48736256-48736275 | None:intergenic | 30.0% | |
| TATGGAAATGTGTCAAAAAG+TGG | - | chr8_2:48736257-48736276 | None:intergenic | 30.0% | |
| ! | TCTACATAGTCTTTTCCTTT+CGG | - | chr8_2:48736395-48736414 | None:intergenic | 30.0% |
| ! | TTTGATGTTGCTTGATATGT+TGG | - | chr8_2:48736551-48736570 | None:intergenic | 30.0% |
| ! | AAAGCATTACTCACTTCTTA+TGG | + | chr8_2:48736568-48736587 | Msa1252010:CDS | 30.0% |
| GTATACATGCTAGTGATAAT+TGG | + | chr8_2:48736635-48736654 | Msa1252010:CDS | 30.0% | |
| ! | AGTGATAATTGGAGTGTTAA+TGG | + | chr8_2:48736646-48736665 | Msa1252010:CDS | 30.0% |
| !! | GGTAGAAGTTCTAGATTTAA+AGG | + | chr8_2:48736757-48736776 | Msa1252010:CDS | 30.0% |
| !! | CAAATTTTTCAGTATGGGAA+TGG | + | chr8_2:48736880-48736899 | Msa1252010:three_prime_UTR | 30.0% |
| TCTTCAGTGTAGAAGATATC+AGG | - | chr8_2:48733693-48733712 | None:intergenic | 35.0% | |
| CACTAGATATCTTCTTCACA+AGG | + | chr8_2:48733875-48733894 | Msa1252010:CDS | 35.0% | |
| TAATTATCTGAGCGTGTGTT+TGG | - | chr8_2:48733976-48733995 | None:intergenic | 35.0% | |
| !! | TGCAAACATTTTGATAGCAG+AGG | - | chr8_2:48734116-48734135 | None:intergenic | 35.0% |
| CTTTGTGCAAAATTCTGCTA+CGG | + | chr8_2:48734227-48734246 | Msa1252010:CDS | 35.0% | |
| AATGACAGAAGATGCAGAAA+AGG | + | chr8_2:48734313-48734332 | Msa1252010:CDS | 35.0% | |
| ATGACAGAAGATGCAGAAAA+GGG | + | chr8_2:48734314-48734333 | Msa1252010:CDS | 35.0% | |
| TTCAATTCTTGCATACTTCG+CGG | + | chr8_2:48734365-48734384 | Msa1252010:CDS | 35.0% | |
| ! | CCATAAAGACAATGCTTTTG+TGG | - | chr8_2:48734420-48734439 | None:intergenic | 35.0% |
| !! | CCACAAAAGCATTGTCTTTA+TGG | + | chr8_2:48734417-48734436 | Msa1252010:CDS | 35.0% |
| !! | TTTTCTCCAAGGTGTTAAAG+AGG | + | chr8_2:48734480-48734499 | Msa1252010:CDS | 35.0% |
| ! | TTTCTCCAAGGTGTTAAAGA+GGG | + | chr8_2:48734481-48734500 | Msa1252010:CDS | 35.0% |
| TCAGTAAGAAAAAGATGGTG+GGG | + | chr8_2:48734557-48734576 | Msa1252010:CDS | 35.0% | |
| ! | TCAGAATCAGAACCAGTTTT+TGG | - | chr8_2:48734707-48734726 | None:intergenic | 35.0% |
| ! | AATTTGCTTCCATCTGCAAA+AGG | + | chr8_2:48734779-48734798 | Msa1252010:CDS | 35.0% |
| GATGGTTTATGATGTGGATT+TGG | + | chr8_2:48734934-48734953 | Msa1252010:CDS | 35.0% | |
| !! | GGATTTGGTGATGAACATAT+TGG | + | chr8_2:48734949-48734968 | Msa1252010:CDS | 35.0% |
| AACTAGTCCTCAAAGATCAA+GGG | + | chr8_2:48735006-48735025 | Msa1252010:CDS | 35.0% | |
| TTCACATAGCTCAAAGTTGA+AGG | + | chr8_2:48735108-48735127 | Msa1252010:CDS | 35.0% | |
| GTATCTTCAAGAAGTTGCTA+AGG | + | chr8_2:48735150-48735169 | Msa1252010:CDS | 35.0% | |
| ATAGCAACAAACTTATCCAG+AGG | - | chr8_2:48735187-48735206 | None:intergenic | 35.0% | |
| TGATCACATCTTGCAAATTC+AGG | - | chr8_2:48735223-48735242 | None:intergenic | 35.0% | |
| !! | AAGCACCGACATATAAATAC+CGG | + | chr8_2:48735353-48735372 | Msa1252010:intron | 35.0% |
| ! | ATGTCTTCAATCTGAAGTGT+CGG | + | chr8_2:48735468-48735487 | Msa1252010:intron | 35.0% |
| GCCACAATATGTTTCATTTG+TGG | + | chr8_2:48735533-48735552 | Msa1252010:intron | 35.0% | |
| CCCACAAATGAAACATATTG+TGG | - | chr8_2:48735537-48735556 | None:intergenic | 35.0% | |
| ATCTAACAGGAAAGTTTGGT+TGG | - | chr8_2:48735675-48735694 | None:intergenic | 35.0% | |
| GATGGTATCAAAGCTTATTC+AGG | - | chr8_2:48736169-48736188 | None:intergenic | 35.0% | |
| ATGTCGGAAGAAATATGGTA+TGG | - | chr8_2:48736275-48736294 | None:intergenic | 35.0% | |
| TTGTGTTAAGAGTCTCATGT+CGG | - | chr8_2:48736291-48736310 | None:intergenic | 35.0% | |
| AGCATGCATACATGATGAAA+TGG | - | chr8_2:48736440-48736459 | None:intergenic | 35.0% | |
| !!! | ATTGTGCTGCATGTTTTGAT+GGG | - | chr8_2:48736600-48736619 | None:intergenic | 35.0% |
| !! | AATTGTGCTGCATGTTTTGA+TGG | - | chr8_2:48736601-48736620 | None:intergenic | 35.0% |
| ATCCTAAGAGTTGTGTTCTT+TGG | - | chr8_2:48736682-48736701 | None:intergenic | 35.0% | |
| !!! | CTTTTGAGTTGTGCTTCTAT+TGG | - | chr8_2:48736836-48736855 | None:intergenic | 35.0% |
| AGCATTGTCTTTATGGTCAG+AGG | + | chr8_2:48734424-48734443 | Msa1252010:CDS | 40.0% | |
| ! | CATTGAAGCGATTTTCTCCA+AGG | + | chr8_2:48734469-48734488 | Msa1252010:CDS | 40.0% |
| GCATCACCGATGAGATTTAA+GGG | - | chr8_2:48734656-48734675 | None:intergenic | 40.0% | |
| ! | GAAACAACACCTTTTGCAGA+TGG | - | chr8_2:48734791-48734810 | None:intergenic | 40.0% |
| !! | GATCTTTGAGGACTAGTTGA+TGG | - | chr8_2:48735004-48735023 | None:intergenic | 40.0% |
| CAACTAGTCCTCAAAGATCA+AGG | + | chr8_2:48735005-48735024 | Msa1252010:CDS | 40.0% | |
| ACATAGCTCAAAGTTGAAGG+TGG | + | chr8_2:48735111-48735130 | Msa1252010:CDS | 40.0% | |
| TAAGGATGTGAATTTGCCTC+TGG | + | chr8_2:48735168-48735187 | Msa1252010:CDS | 40.0% | |
| GTGTAACATTAACACGGCTT+TGG | - | chr8_2:48735423-48735442 | None:intergenic | 40.0% | |
| TGAAGACATGTCTGAGTATC+CGG | - | chr8_2:48735457-48735476 | None:intergenic | 40.0% | |
| AACAGGAAAGTTTGGTTGGA+GGG | - | chr8_2:48735671-48735690 | None:intergenic | 40.0% | |
| TAACAGGAAAGTTTGGTTGG+AGG | - | chr8_2:48735672-48735691 | None:intergenic | 40.0% | |
| GTGTGTTAAGAGTCTCACAT+CGG | - | chr8_2:48735833-48735852 | None:intergenic | 40.0% | |
| ACACCTAGGATACGACATTT+AGG | + | chr8_2:48735849-48735868 | Msa1252010:intron | 40.0% | |
| CACCTAGGATACGACATTTA+GGG | + | chr8_2:48735850-48735869 | Msa1252010:intron | 40.0% | |
| ! | TACGACATTTAGGGTGTGTT+TGG | + | chr8_2:48735859-48735878 | Msa1252010:intron | 40.0% |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | + | chr8_2:48735866-48735885 | Msa1252010:intron | 40.0% |
| TTAGGGTGTGTTTGGATTGA+GGG | + | chr8_2:48735867-48735886 | Msa1252010:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr8_2:48735873-48735892 | Msa1252010:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr8_2:48735877-48735896 | Msa1252010:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr8_2:48735877-48735896 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr8_2:48735873-48735892 | None:intergenic | 40.0% | |
| CTTGGATCATGCTCAAGATA+TGG | - | chr8_2:48736124-48736143 | None:intergenic | 40.0% | |
| GTCTCATGTCGGAAGAAATA+TGG | - | chr8_2:48736280-48736299 | None:intergenic | 40.0% | |
| !!! | GAGAGTTTTTTGCAGTCTAG+AGG | - | chr8_2:48736418-48736437 | None:intergenic | 40.0% |
| ACTTGGACTACAAGTCTTAG+TGG | - | chr8_2:48736481-48736500 | None:intergenic | 40.0% | |
| CTTGCTCAAAGAAGAGAACT+TGG | - | chr8_2:48736498-48736517 | None:intergenic | 40.0% | |
| CACCAAAGAACACAACTCTT+AGG | + | chr8_2:48736677-48736696 | Msa1252010:CDS | 40.0% | |
| TCTTAGGATGAAACTAGCTG+AGG | + | chr8_2:48736693-48736712 | Msa1252010:CDS | 40.0% | |
| GATTTGGCAATCAATGGAAC+TGG | + | chr8_2:48736736-48736755 | Msa1252010:CDS | 40.0% | |
| TCTACACTGAAGACTCAGTC+AGG | + | chr8_2:48733700-48733719 | Msa1252010:CDS | 45.0% | |
| !! | TGAGCGTGTGTTTGGTTCTA+CGG | - | chr8_2:48733968-48733987 | None:intergenic | 45.0% |
| TTCTTCTCCGCCAGGAAAAT+CGG | - | chr8_2:48734198-48734217 | None:intergenic | 45.0% | |
| ATTCTTGCATACTTCGCGGT+TGG | + | chr8_2:48734369-48734388 | Msa1252010:CDS | 45.0% | |
| TCGAACCCTCTTTAACACCT+TGG | - | chr8_2:48734489-48734508 | None:intergenic | 45.0% | |
| CGCATCACCGATGAGATTTA+AGG | - | chr8_2:48734657-48734676 | None:intergenic | 45.0% | |
| TCTAGATGGCTGCCAAAAAC+TGG | + | chr8_2:48734692-48734711 | Msa1252010:CDS | 45.0% | |
| AAGGGTTGGACTTCAATTCG+AGG | + | chr8_2:48734889-48734908 | Msa1252010:CDS | 45.0% | |
| AAAGCGACCCTTGATCTTTG+AGG | - | chr8_2:48735016-48735035 | None:intergenic | 45.0% | |
| !!! | GATCAAGGGTCGCTTTTGAA+CGG | + | chr8_2:48735020-48735039 | Msa1252010:CDS | 45.0% |
| TGTTACACACTGATATGGGC+CGG | + | chr8_2:48735435-48735454 | Msa1252010:intron | 45.0% | |
| !! | TGTCGGTGCTACATAGAAAG+AGG | + | chr8_2:48735485-48735504 | Msa1252010:intron | 45.0% |
| ! | CTTTTTCCTGGTTTAGGTGC+AGG | + | chr8_2:48735606-48735625 | Msa1252010:intron | 45.0% |
| GTGAGACTCTTAACACACCT+AGG | + | chr8_2:48735835-48735854 | Msa1252010:intron | 45.0% | |
| CACCCTAAATGTCGTATCCT+AGG | - | chr8_2:48735855-48735874 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr8_2:48735876-48735895 | Msa1252010:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr8_2:48735878-48735897 | Msa1252010:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr8_2:48735878-48735897 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr8_2:48735876-48735895 | None:intergenic | 45.0% | |
| TCAGGATTAGGACACGCAAT+CGG | - | chr8_2:48736151-48736170 | None:intergenic | 45.0% | |
| !! | CTTTCGGTTTTGTCGAGTTC+TGG | - | chr8_2:48736379-48736398 | None:intergenic | 45.0% |
| CAGAACTCGACAAAACCGAA+AGG | + | chr8_2:48736377-48736396 | Msa1252010:CDS | 45.0% | |
| CAAGCTAGAGCTGCATCAAA+TGG | + | chr8_2:48736514-48736533 | Msa1252010:CDS | 45.0% | |
| ! | GTACAACTCCCCGATTTTCC+TGG | + | chr8_2:48734185-48734204 | Msa1252010:CDS | 50.0% |
| TCTTCTCCGCCAGGAAAATC+GGG | - | chr8_2:48734197-48734216 | None:intergenic | 50.0% | |
| TCAAATGCTTCTTCTCCGCC+AGG | - | chr8_2:48734206-48734225 | None:intergenic | 50.0% | |
| !! | CGGTGCTACATAGAAAGAGG+AGG | + | chr8_2:48735488-48735507 | Msa1252010:intron | 50.0% |
| ATTGAGGGTTTAGGAGGGGA+AGG | + | chr8_2:48735882-48735901 | Msa1252010:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | + | chr8_2:48735883-48735902 | Msa1252010:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | - | chr8_2:48735883-48735902 | None:intergenic | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | - | chr8_2:48735882-48735901 | None:intergenic | 50.0% | |
| CAGGATTAGGACACGCAATC+GGG | - | chr8_2:48736150-48736169 | None:intergenic | 50.0% | |
| GCTAGAGCTGCATCAAATGG+TGG | + | chr8_2:48736517-48736536 | Msa1252010:CDS | 50.0% | |
| ! | CAACTCCCCGATTTTCCTGG+CGG | + | chr8_2:48734188-48734207 | Msa1252010:CDS | 55.0% |
| CTTCTCCGCCAGGAAAATCG+GGG | - | chr8_2:48734196-48734215 | None:intergenic | 55.0% | |
| ATACTCGGCAGCGCATCTTG+CGG | - | chr8_2:48734288-48734307 | None:intergenic | 55.0% | |
| !!! | CAAGGGTCGCTTTTGAACGG+AGG | + | chr8_2:48735023-48735042 | Msa1252010:CDS | 55.0% |
| GGACACGCAATCGGGTAACT+TGG | - | chr8_2:48736142-48736161 | None:intergenic | 55.0% | |
| !!! | GGGTCGCTTTTGAACGGAGG+AGG | + | chr8_2:48735026-48735045 | Msa1252010:CDS | 60.0% |
| TGAACGGAGGAGGTCGCGTT+CGG | + | chr8_2:48735036-48735055 | Msa1252010:CDS | 60.0% | |
| GGTCAGCCTGCACCTAAACC+AGG | - | chr8_2:48735615-48735634 | None:intergenic | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | + | chr8_2:48735886-48735905 | Msa1252010:intron | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | + | chr8_2:48735887-48735906 | Msa1252010:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | + | chr8_2:48735888-48735907 | Msa1252010:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr8_2:48735888-48735907 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr8_2:48735887-48735906 | None:intergenic | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr8_2:48735886-48735905 | None:intergenic | 60.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | - | chr8_2:48735892-48735911 | None:intergenic | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | - | chr8_2:48735891-48735910 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 48733439 | 48736975 | 48733439 | ID=Msa1252010;Name=Msa1252010 |
| chr8_2 | mRNA | 48733439 | 48736975 | 48733439 | ID=Msa1252010-mRNA-1;Parent=Msa1252010;Name=Msa1252010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=224|1|1|1|1|1|4|114|596 |
| chr8_2 | exon | 48733439 | 48733721 | 48733439 | ID=Msa1252010-mRNA-1:exon:14684;Parent=Msa1252010-mRNA-1 |
| chr8_2 | exon | 48733827 | 48733896 | 48733827 | ID=Msa1252010-mRNA-1:exon:14685;Parent=Msa1252010-mRNA-1 |
| chr8_2 | exon | 48734110 | 48735279 | 48734110 | ID=Msa1252010-mRNA-1:exon:14686;Parent=Msa1252010-mRNA-1 |
| chr8_2 | exon | 48736370 | 48736975 | 48736370 | ID=Msa1252010-mRNA-1:exon:14687;Parent=Msa1252010-mRNA-1 |
| chr8_2 | five_prime_UTR | 48733439 | 48733662 | 48733439 | ID=Msa1252010-mRNA-1:five_prime_utr;Parent=Msa1252010-mRNA-1 |
| chr8_2 | CDS | 48733663 | 48733721 | 48733663 | ID=Msa1252010-mRNA-1:cds;Parent=Msa1252010-mRNA-1 |
| chr8_2 | CDS | 48733827 | 48733896 | 48733827 | ID=Msa1252010-mRNA-1:cds;Parent=Msa1252010-mRNA-1 |
| chr8_2 | CDS | 48734110 | 48735279 | 48734110 | ID=Msa1252010-mRNA-1:cds;Parent=Msa1252010-mRNA-1 |
| chr8_2 | CDS | 48736370 | 48736861 | 48736370 | ID=Msa1252010-mRNA-1:cds;Parent=Msa1252010-mRNA-1 |
| chr8_2 | three_prime_UTR | 48736862 | 48736975 | 48736862 | ID=Msa1252010-mRNA-1:three_prime_utr;Parent=Msa1252010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
