Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102140 | XP_024636298.1 | 90.687 | 451 | 41 | 1 | 36 | 485 | 77 | 527 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102140 | sp|Q9LDD4|ARID2_ARATH | 46.535 | 202 | 100 | 4 | 287 | 485 | 372 | 568 | 4.08e-50 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102140 | A0A072VX39 | 90.244 | 451 | 40 | 2 | 36 | 485 | 145 | 592 | 0.0 | 825 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1102140 | 0.808730 | 2.682981e-50 | -8.615850e-47 |
| Msa0701900 | Msa1102140 | 0.801676 | 8.046633e-49 | -8.615850e-47 |
| Msa0743720 | Msa1102140 | 0.808149 | 3.569352e-50 | -8.615850e-47 |
| Msa0801760 | Msa1102140 | 0.818478 | 1.919456e-52 | -8.615850e-47 |
| Msa0832370 | Msa1102140 | 0.818786 | 1.634321e-52 | -8.615850e-47 |
| Msa0157290 | Msa1102140 | 0.808307 | 3.303264e-50 | -8.615850e-47 |
| Msa0215320 | Msa1102140 | -0.802616 | 5.155323e-49 | -8.615850e-47 |
| Msa0226250 | Msa1102140 | 0.806982 | 6.314437e-50 | -8.615850e-47 |
| Msa0428930 | Msa1102140 | 0.802667 | 5.031835e-49 | -8.615850e-47 |
| Msa0480980 | Msa1102140 | 0.807235 | 5.582249e-50 | -8.615850e-47 |
| Msa0993290 | Msa1102140 | 0.810430 | 1.157270e-50 | -8.615850e-47 |
| Msa0993600 | Msa1102140 | 0.814776 | 1.296634e-51 | -8.615850e-47 |
| Msa1014540 | Msa1102140 | 0.821320 | 4.298530e-53 | -8.615850e-47 |
| Msa1042710 | Msa1102140 | 0.826391 | 2.783806e-54 | -8.615850e-47 |
| Msa1075220 | Msa1102140 | -0.839872 | 1.221619e-57 | -8.615850e-47 |
| Msa1076450 | Msa1102140 | 0.800815 | 1.207590e-48 | -8.615850e-47 |
| Msa1102140 | Msa1102150 | 0.848097 | 7.612359e-60 | -8.615850e-47 |
| Msa1102140 | Msa1116130 | -0.830450 | 2.917096e-55 | -8.615850e-47 |
| Msa1102140 | Msa1139000 | -0.810661 | 1.031429e-50 | -8.615850e-47 |
| Msa1102140 | Msa1157930 | -0.805903 | 1.065935e-49 | -8.615850e-47 |
| Msa1102140 | Msa1162550 | -0.819292 | 1.254130e-52 | -8.615850e-47 |
| Msa1102140 | Msa1222970 | 0.818791 | 1.629923e-52 | -8.615850e-47 |
| Msa1102140 | Msa1226660 | 0.801644 | 8.171069e-49 | -8.615850e-47 |
| Msa1102140 | Msa1252010 | 0.821905 | 3.148297e-53 | -8.615850e-47 |
| Msa1102140 | Msa1252390 | 0.832397 | 9.677724e-56 | -8.615850e-47 |
| Msa1102140 | Msa1264020 | 0.801719 | 7.886642e-49 | -8.615850e-47 |
| Msa1102140 | Msa1283860 | 0.804743 | 1.865968e-49 | -8.615850e-47 |
| Msa1102140 | Msa1367080 | 0.831386 | 1.718749e-55 | -8.615850e-47 |
| Msa1102140 | Msa1402730 | 0.803273 | 3.771313e-49 | -8.615850e-47 |
| Msa1102140 | Msa1411070 | 0.804553 | 2.044480e-49 | -8.615850e-47 |
| Msa1102140 | Msa1445610 | -0.813764 | 2.169602e-51 | -8.615850e-47 |
| Msa1102140 | Msa1451620 | -0.812434 | 4.248230e-51 | -8.615850e-47 |
| Msa1102140 | Msa1457240 | 0.803480 | 3.416095e-49 | -8.615850e-47 |
| Msa1102140 | Msa1464940 | 0.842418 | 2.617454e-58 | -8.615850e-47 |
| Msa0239090 | Msa1102140 | 0.803253 | 3.806976e-49 | -8.615850e-47 |
| Msa0293650 | Msa1102140 | 0.808350 | 3.233844e-50 | -8.615850e-47 |
| Msa0340450 | Msa1102140 | 0.801368 | 9.306874e-49 | -8.615850e-47 |
| Msa0581760 | Msa1102140 | 0.813607 | 2.349574e-51 | -8.615850e-47 |
| Msa0599890 | Msa1102140 | 0.830096 | 3.560509e-55 | -8.615850e-47 |
| Msa0876850 | Msa1102140 | -0.806408 | 8.348423e-50 | -8.615850e-47 |
| Msa0880140 | Msa1102140 | 0.803667 | 3.124614e-49 | -8.615850e-47 |
| Msa0942080 | Msa1102140 | -0.813268 | 2.789774e-51 | -8.615850e-47 |
| Msa0976670 | Msa1102140 | 0.820167 | 7.913808e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102140 | MtrunA17_Chr1g0186191 | 90.205 | 439 | 39 | 2 | 48 | 485 | 154 | 589 | 0.0 | 801 |
| Msa1102140 | MtrunA17_Chr1g0186261 | 87.140 | 451 | 44 | 3 | 36 | 485 | 145 | 582 | 0.0 | 775 |
| Msa1102140 | MtrunA17_Chr1g0186261 | 87.879 | 33 | 4 | 0 | 1 | 33 | 1 | 33 | 7.50e-11 | 64.3 |
| Msa1102140 | MtrunA17_Chr1g0186281 | 87.025 | 447 | 42 | 5 | 40 | 485 | 148 | 579 | 0.0 | 757 |
| Msa1102140 | MtrunA17_Chr1g0186281 | 87.879 | 33 | 4 | 0 | 1 | 33 | 1 | 33 | 1.59e-11 | 66.6 |
| Msa1102140 | MtrunA17_Chr8g0387181 | 68.238 | 488 | 116 | 7 | 36 | 485 | 136 | 622 | 0.0 | 628 |
| Msa1102140 | MtrunA17_Chr8g0387141 | 68.511 | 470 | 102 | 5 | 38 | 485 | 145 | 590 | 0.0 | 621 |
| Msa1102140 | MtrunA17_Chr8g0387161 | 80.729 | 192 | 36 | 1 | 294 | 484 | 99 | 290 | 9.26e-108 | 322 |
| Msa1102140 | MtrunA17_Chr8g0387161 | 69.136 | 81 | 25 | 0 | 146 | 226 | 15 | 95 | 2.02e-27 | 111 |
| Msa1102140 | MtrunA17_Chr6g0479271 | 53.704 | 324 | 104 | 7 | 75 | 386 | 7 | 296 | 1.59e-84 | 263 |
| Msa1102140 | MtrunA17_Chr7g0248041 | 35.976 | 328 | 167 | 8 | 146 | 464 | 273 | 566 | 4.72e-55 | 194 |
| Msa1102140 | MtrunA17_Chr8g0348691 | 44.865 | 185 | 98 | 3 | 289 | 469 | 76 | 260 | 1.49e-47 | 165 |
| Msa1102140 | MtrunA17_Chr5g0420461 | 57.895 | 95 | 21 | 1 | 292 | 386 | 90 | 165 | 3.75e-27 | 108 |
| Msa1102140 | MtrunA17_Chr7g0241681 | 36.471 | 170 | 100 | 2 | 289 | 452 | 194 | 361 | 4.00e-27 | 112 |
| Msa1102140 | MtrunA17_Chr3g0086341 | 37.313 | 201 | 109 | 5 | 270 | 457 | 130 | 326 | 5.75e-26 | 110 |
| Msa1102140 | MtrunA17_Chr7g0241661 | 30.588 | 170 | 110 | 3 | 289 | 452 | 186 | 353 | 1.32e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102140 | AT4G11400.2 | 46.535 | 202 | 100 | 4 | 287 | 485 | 372 | 568 | 4.14e-51 | 183 |
| Msa1102140 | AT4G11400.1 | 46.535 | 202 | 100 | 4 | 287 | 485 | 372 | 568 | 4.14e-51 | 183 |
| Msa1102140 | AT2G46040.3 | 39.130 | 184 | 102 | 3 | 281 | 458 | 352 | 531 | 2.24e-33 | 133 |
| Msa1102140 | AT2G46040.1 | 39.130 | 184 | 102 | 3 | 281 | 458 | 352 | 531 | 2.24e-33 | 133 |
| Msa1102140 | AT2G46040.2 | 39.130 | 184 | 102 | 3 | 281 | 458 | 366 | 545 | 2.56e-33 | 133 |
| Msa1102140 | AT5G04110.1 | 36.646 | 161 | 90 | 4 | 289 | 438 | 361 | 520 | 2.55e-25 | 109 |
| Msa1102140 | AT5G04110.3 | 36.646 | 161 | 90 | 4 | 289 | 438 | 361 | 520 | 2.55e-25 | 109 |
| Msa1102140 | AT5G04110.2 | 36.646 | 161 | 90 | 4 | 289 | 438 | 362 | 521 | 2.56e-25 | 109 |
| Msa1102140 | AT1G26580.3 | 31.429 | 210 | 124 | 4 | 274 | 465 | 54 | 261 | 2.97e-23 | 102 |
| Msa1102140 | AT1G26580.2 | 31.429 | 210 | 124 | 4 | 274 | 465 | 120 | 327 | 3.67e-23 | 102 |
| Msa1102140 | AT1G26580.1 | 31.429 | 210 | 124 | 4 | 274 | 465 | 120 | 327 | 3.67e-23 | 102 |
| Msa1102140 | AT1G13880.3 | 35.912 | 181 | 102 | 5 | 287 | 457 | 127 | 303 | 3.28e-21 | 96.3 |
| Msa1102140 | AT1G13880.1 | 35.912 | 181 | 102 | 5 | 287 | 457 | 126 | 302 | 3.31e-21 | 96.3 |
| Msa1102140 | AT2G03470.2 | 39.716 | 141 | 81 | 3 | 327 | 463 | 163 | 303 | 3.42e-21 | 96.3 |
| Msa1102140 | AT2G03470.1 | 39.716 | 141 | 81 | 3 | 327 | 463 | 164 | 304 | 3.51e-21 | 96.3 |
| Msa1102140 | AT1G13880.2 | 35.912 | 181 | 102 | 5 | 287 | 457 | 136 | 312 | 4.36e-21 | 95.9 |
| Msa1102140 | AT5G04110.4 | 36.986 | 146 | 79 | 5 | 289 | 422 | 361 | 505 | 4.10e-18 | 87.4 |
Find 111 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGATGGTTCTGTTAA+TGG | 0.061237 | 7_3:+34327303 | None:intergenic |
| TACCATCACCGTTGACATTT+TGG | 0.128019 | 7_3:+34327445 | None:intergenic |
| CCATTGGGGATTTGATAAAA+TGG | 0.180493 | 7_3:-34325878 | Msa1102140:CDS |
| CAATGGACTGGTGTAGTTTA+TGG | 0.202655 | 7_3:-34326096 | Msa1102140:CDS |
| TTATACTCCTTCCCCTTTGA+TGG | 0.227519 | 7_3:+34327291 | None:intergenic |
| TCACGAGAATCATCACTAAA+TGG | 0.231296 | 7_3:+34326162 | None:intergenic |
| TGATGAAGAAAAGACATTTA+AGG | 0.241795 | 7_3:-34325827 | Msa1102140:CDS |
| CACCGTCACATTTGTTATTT+CGG | 0.268330 | 7_3:+34327469 | None:intergenic |
| GATGATGACGAAGTCGAATT+TGG | 0.269756 | 7_3:-34325637 | Msa1102140:CDS |
| TCAGTAAAAGTTTCAGCTTC+AGG | 0.300548 | 7_3:+34327723 | None:intergenic |
| CATCATAAAGCACATTGATT+TGG | 0.322571 | 7_3:-34327532 | Msa1102140:CDS |
| TTGGATGATGATCCATAGTT+TGG | 0.324832 | 7_3:+34327198 | None:intergenic |
| GATGAAGCTGAAGTTTGAAT+TGG | 0.326776 | 7_3:-34325914 | Msa1102140:CDS |
| GGTCTTGAATCATCTTTAAC+AGG | 0.327003 | 7_3:+34326039 | None:intergenic |
| TGAATTTGAGACGTAGTAAA+AGG | 0.331609 | 7_3:-34326359 | Msa1102140:CDS |
| TTAATTCTCGCAAACGTAAA+CGG | 0.334594 | 7_3:-34327344 | Msa1102140:CDS |
| AATCGTTAGGCACACAAGTA+TGG | 0.361974 | 7_3:-34326062 | Msa1102140:CDS |
| CAAGAGTGATGGTTATTTAT+CGG | 0.364961 | 7_3:-34327502 | Msa1102140:CDS |
| GAAGTCGAATTTGGATCTTT+TGG | 0.370187 | 7_3:-34325628 | Msa1102140:CDS |
| TTATAAAAGTTCATGGAAAA+CGG | 0.374418 | 7_3:-34327762 | Msa1102140:exon |
| TCTGTTAATGGTTGAGCTAC+AGG | 0.378633 | 7_3:+34327315 | None:intergenic |
| TTCTTCTTGATCACAACATC+TGG | 0.384181 | 7_3:+34326267 | None:intergenic |
| TAATTCTCGCAAACGTAAAC+GGG | 0.384199 | 7_3:-34327343 | Msa1102140:CDS |
| CACTCCTTGAATTCAGTTGA+TGG | 0.388773 | 7_3:+34325577 | None:intergenic |
| CGTGATAAGTTTGTTTCTGT+TGG | 0.390129 | 7_3:-34326144 | Msa1102140:CDS |
| AACCGCCTCTTGTGCGGAAA+CGG | 0.397919 | 7_3:-34327376 | Msa1102140:CDS |
| AATGGACTGGTGTAGTTTAT+GGG | 0.405764 | 7_3:-34326095 | Msa1102140:CDS |
| CATTGGGGATTTGATAAAAT+GGG | 0.415280 | 7_3:-34325877 | Msa1102140:CDS |
| TTTCTTCATCACTAGTCCAT+TGG | 0.418513 | 7_3:+34325839 | None:intergenic |
| AAACTACACCAGTCCATTGC+GGG | 0.425596 | 7_3:+34326100 | None:intergenic |
| GTGTCCATCAACTGAATTCA+AGG | 0.433131 | 7_3:-34325581 | Msa1102140:CDS |
| AAGCATGCAGAACCAAACTA+TGG | 0.435744 | 7_3:-34327210 | Msa1102140:CDS |
| TCTACAAATTCTTCCTCAAA+TGG | 0.436195 | 7_3:+34325520 | None:intergenic |
| GTACGATCAACATAAACAAA+AGG | 0.436685 | 7_3:-34327820 | Msa1102140:five_prime_UTR |
| TATAAAAGTTCATGGAAAAC+GGG | 0.438007 | 7_3:-34327761 | Msa1102140:exon |
| GTCTCTTAAGTTGCATGGTA+TGG | 0.438652 | 7_3:-34326328 | Msa1102140:CDS |
| TGATGTTACTCGATTCTAAC+GGG | 0.439420 | 7_3:+34327550 | None:intergenic |
| CGTCCAGTTACTTTCAAAAG+AGG | 0.446172 | 7_3:-34325753 | Msa1102140:CDS |
| ATGAAGCTGAAGTTTGAATT+GGG | 0.447468 | 7_3:-34325913 | Msa1102140:CDS |
| TGAAAATTATTGATAATTGA+TGG | 0.447965 | 7_3:+34327947 | None:intergenic |
| TCGTGCCAAGTATGAGGATT+CGG | 0.451587 | 7_3:-34326406 | Msa1102140:CDS |
| TTTCAGCTTCAGGCTGATCA+AGG | 0.459068 | 7_3:+34327733 | None:intergenic |
| CATAAACAAAAGGGCAAGCT+AGG | 0.460144 | 7_3:-34327810 | Msa1102140:five_prime_UTR |
| GATTGCATATTGCTGCAAAC+AGG | 0.460811 | 7_3:-34325936 | Msa1102140:CDS |
| AAAATTGGGCACTGGTGTTA+AGG | 0.461038 | 7_3:-34327406 | Msa1102140:CDS |
| TCAAAGGGGAAGGAGTATAA+AGG | 0.465628 | 7_3:-34327288 | Msa1102140:CDS |
| ACTACTAAAACAGATCTTGT+TGG | 0.474862 | 7_3:-34326015 | Msa1102140:CDS |
| TTTACTGAAATTCATAGAAA+CGG | 0.475299 | 7_3:-34327708 | Msa1102140:CDS |
| TATGAGGATTCGGTTTCTCT+TGG | 0.478939 | 7_3:-34326396 | Msa1102140:CDS |
| CACGAGAATCATCACTAAAT+GGG | 0.488835 | 7_3:+34326163 | None:intergenic |
| CCCTAGCAGTATGAAGAGAT+AGG | 0.489155 | 7_3:+34327893 | None:intergenic |
| TCCATTGCGGGACTTCCACT+TGG | 0.490081 | 7_3:+34326112 | None:intergenic |
| AGTCCCATGGAGAAAACAAC+TGG | 0.495312 | 7_3:-34326294 | Msa1102140:CDS |
| GGGACTTCCACTTGGAAAAG+AGG | 0.495364 | 7_3:+34326120 | None:intergenic |
| TTGATTTGATAAGCCATTTG+AGG | 0.500510 | 7_3:-34325533 | Msa1102140:three_prime_UTR |
| GTGGAAGTCCCGCAATGGAC+TGG | 0.500938 | 7_3:-34326108 | Msa1102140:CDS |
| AATGTCAACGGTGATGGTAA+TGG | 0.506261 | 7_3:-34327441 | Msa1102140:CDS |
| TACGATCAACATAAACAAAA+GGG | 0.509830 | 7_3:-34327819 | Msa1102140:five_prime_UTR |
| ACCATTAACAGAACCATCAA+AGG | 0.511680 | 7_3:-34327304 | Msa1102140:CDS |
| CTCCGTTTCCGCACAAGAGG+CGG | 0.517041 | 7_3:+34327374 | None:intergenic |
| TGGTGACATCAAGGAAATGA+AGG | 0.519574 | 7_3:+34327867 | None:intergenic |
| GGGAGTGACTCTAAATCGTT+AGG | 0.521416 | 7_3:-34326075 | Msa1102140:CDS |
| GGTGCATCGTGCCAAGTATG+AGG | 0.522667 | 7_3:-34326412 | Msa1102140:CDS |
| CCATTAACAGAACCATCAAA+GGG | 0.530978 | 7_3:-34327303 | Msa1102140:CDS |
| CTCTTGTGCGGAAACGGAGA+AGG | 0.532423 | 7_3:-34327370 | Msa1102140:CDS |
| GAAGGAGTATAAAGGAGGCC+AGG | 0.532750 | 7_3:-34327280 | Msa1102140:CDS |
| GCATCTGAACAGAAATGTCC+TGG | 0.538414 | 7_3:+34327262 | None:intergenic |
| TCTATGTCTCTTAAGTTGCA+TGG | 0.539525 | 7_3:-34326333 | Msa1102140:CDS |
| CTTCTCCGTTTCCGCACAAG+AGG | 0.540441 | 7_3:+34327371 | None:intergenic |
| GTGGCGGTGATGGTACTAAC+TGG | 0.541483 | 7_3:+34327969 | None:intergenic |
| ATAGTGCAGTTCAAAACCTT+GGG | 0.542469 | 7_3:-34327659 | Msa1102140:CDS |
| CTATCAGAATCGAGTGACTT+CGG | 0.542718 | 7_3:-34325674 | Msa1102140:CDS |
| GCGAGGAAGTTTCACTCCAA+TGG | 0.542815 | 7_3:-34325855 | Msa1102140:CDS |
| AGAAACCGAATCCTCATACT+TGG | 0.546181 | 7_3:+34326401 | None:intergenic |
| AAAACAGATCTTGTTGGTAG+AGG | 0.549037 | 7_3:-34326009 | Msa1102140:CDS |
| ATAATTGATGGTGGCGGTGA+TGG | 0.559121 | 7_3:+34327959 | None:intergenic |
| GGGATTTGATAAAATGGGCG+AGG | 0.561801 | 7_3:-34325872 | Msa1102140:CDS |
| ATAAATAACCATCACTCTTG+TGG | 0.562805 | 7_3:+34327505 | None:intergenic |
| GTCCAAAATGTCAACGGTGA+TGG | 0.566507 | 7_3:-34327447 | Msa1102140:CDS |
| ACATTTCTGTTCAGATGCTG+AGG | 0.568396 | 7_3:-34327257 | Msa1102140:CDS |
| GATAGTGCAGTTCAAAACCT+TGG | 0.570558 | 7_3:-34327660 | Msa1102140:CDS |
| TTGGTTAACCACAAGAGTGA+TGG | 0.572454 | 7_3:-34327513 | Msa1102140:CDS |
| CCTATCTCTTCATACTGCTA+GGG | 0.574716 | 7_3:-34327893 | Msa1102140:five_prime_UTR |
| TTATGCTTTACAGAAGGTGA+AGG | 0.574719 | 7_3:-34326433 | Msa1102140:intron |
| ATGATGTTACTCGATTCTAA+CGG | 0.575917 | 7_3:+34327549 | None:intergenic |
| ACCTATCTCTTCATACTGCT+AGG | 0.576392 | 7_3:-34327894 | Msa1102140:five_prime_UTR |
| GTCTCAAATTCATCGTACCT+TGG | 0.576475 | 7_3:+34326370 | None:intergenic |
| TCCAAGTGGAAGTCCCGCAA+TGG | 0.584534 | 7_3:-34326113 | Msa1102140:CDS |
| TGATATAACCGCCTCTTGTG+CGG | 0.584809 | 7_3:-34327382 | Msa1102140:CDS |
| TTCAGCTTCAGGCTGATCAA+GGG | 0.589564 | 7_3:+34327734 | None:intergenic |
| AACGGTGGTTGTCTTGTCGA+GGG | 0.592172 | 7_3:-34327690 | Msa1102140:CDS |
| AACAGAACCATCAAAGGGGA+AGG | 0.593313 | 7_3:-34327298 | Msa1102140:CDS |
| AACCGAAATAACAAATGTGA+CGG | 0.598410 | 7_3:-34327471 | Msa1102140:CDS |
| AAACGGTGGTTGTCTTGTCG+AGG | 0.603053 | 7_3:-34327691 | Msa1102140:CDS |
| AGTGTTCAGAGAACAAGTAA+TGG | 0.612428 | 7_3:-34325558 | Msa1102140:exon |
| TCGGTTTCTCTTGGTCACCA+AGG | 0.612735 | 7_3:-34326387 | Msa1102140:CDS |
| GCAATGAGTTCACATACCCA+AGG | 0.620152 | 7_3:+34327643 | None:intergenic |
| CTTGTTGGTAGAGGAAGACG+AGG | 0.623018 | 7_3:-34326000 | Msa1102140:CDS |
| ACTGAAATTCATAGAAACGG+TGG | 0.632868 | 7_3:-34327705 | Msa1102140:CDS |
| AAACTATGGATCATCATCCA+AGG | 0.633710 | 7_3:-34327196 | Msa1102140:intron |
| GAGGGCACGAGATGTTCTGT+CGG | 0.635396 | 7_3:-34327238 | Msa1102140:CDS |
| CATTTCTGTTCAGATGCTGA+GGG | 0.635466 | 7_3:-34327256 | Msa1102140:CDS |
| GTCAACGGTGATGGTAATGG+CGG | 0.639485 | 7_3:-34327438 | Msa1102140:CDS |
| GGTGACATCAAGGAAATGAA+GGG | 0.644592 | 7_3:+34327868 | None:intergenic |
| TAAACTACACCAGTCCATTG+CGG | 0.655876 | 7_3:+34326099 | None:intergenic |
| AAAGAGGACAAGAAAAGACA+TGG | 0.658301 | 7_3:-34325737 | Msa1102140:CDS |
| GACGGTGTCCAAAATGTCAA+CGG | 0.686720 | 7_3:-34327453 | Msa1102140:CDS |
| AAGGGGAAGGAGTATAAAGG+AGG | 0.692342 | 7_3:-34327285 | Msa1102140:CDS |
| AAATTATTGATAATTGATGG+TGG | 0.699825 | 7_3:+34327950 | None:intergenic |
| TTATTGATAATTGATGGTGG+CGG | 0.722468 | 7_3:+34327953 | None:intergenic |
| CATTAACAGAACCATCAAAG+GGG | 0.723370 | 7_3:-34327302 | Msa1102140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTTTATAACAAAAATAA+AGG | + | chr7_3:34325752-34325771 | None:intergenic | 10.0% |
| !!! | TGAAAATTATTGATAATTGA+TGG | + | chr7_3:34325579-34325598 | None:intergenic | 15.0% |
| !!! | ATCAATTATCAATAATTTTC+AGG | - | chr7_3:34325578-34325597 | Msa1102140:CDS | 15.0% |
| !!! | TTTTATAACAAAAATAAAGG+AGG | + | chr7_3:34325749-34325768 | None:intergenic | 15.0% |
| !!! | ATTTTTGTTATAAAAGTTCA+TGG | - | chr7_3:34325754-34325773 | Msa1102140:CDS | 15.0% |
| !! | TAAAAGGCTATATATATATA+TGG | - | chr7_3:34326804-34326823 | Msa1102140:intron | 15.0% |
| !! | AAAAGGCTATATATATATAT+GGG | - | chr7_3:34326805-34326824 | Msa1102140:intron | 15.0% |
| !!! | AAATTATTGATAATTGATGG+TGG | + | chr7_3:34325576-34325595 | None:intergenic | 20.0% |
| !! | TTATAAAAGTTCATGGAAAA+CGG | - | chr7_3:34325761-34325780 | Msa1102140:CDS | 20.0% |
| !! | TTTACTGAAATTCATAGAAA+CGG | - | chr7_3:34325815-34325834 | Msa1102140:CDS | 20.0% |
| !!! | TTATACATGATTTTACACAT+TGG | - | chr7_3:34326375-34326394 | Msa1102140:CDS | 20.0% |
| !! | AATATATAATCACAATCTAC+CGG | - | chr7_3:34326510-34326529 | Msa1102140:intron | 20.0% |
| !! | TATATATATATATCGCAAAC+TGG | - | chr7_3:34326961-34326980 | Msa1102140:intron | 20.0% |
| !! | ATTCATTGAATAATCTATAG+TGG | + | chr7_3:34326998-34327017 | None:intergenic | 20.0% |
| ! | TACGATCAACATAAACAAAA+GGG | - | chr7_3:34325704-34325723 | Msa1102140:CDS | 25.0% |
| ! | TATAAAAGTTCATGGAAAAC+GGG | - | chr7_3:34325762-34325781 | Msa1102140:CDS | 25.0% |
| !! | AACTCTTTTTCTAGATCTAT+TGG | + | chr7_3:34325905-34325924 | None:intergenic | 25.0% |
| ! | TGTGTAATGAAAATATACCT+TGG | + | chr7_3:34326347-34326366 | None:intergenic | 25.0% |
| !!! | CATTATTTTAGGAAAGAAAC+CGG | + | chr7_3:34326532-34326551 | None:intergenic | 25.0% |
| !!! | CACATCAATTAGTATTGATT+GGG | + | chr7_3:34326615-34326634 | None:intergenic | 25.0% |
| ! | AATCCAAATCATGTGATTTA+GGG | + | chr7_3:34326702-34326721 | None:intergenic | 25.0% |
| ! | TGATGAAGAAAAGACATTTA+AGG | - | chr7_3:34327696-34327715 | Msa1102140:CDS | 25.0% |
| !!! | GTTCCAAAAATACTTGTTTT+GGG | + | chr7_3:34327746-34327765 | None:intergenic | 25.0% |
| !! | TGTTCCAAAAATACTTGTTT+TGG | + | chr7_3:34327747-34327766 | None:intergenic | 25.0% |
| !! | TTATTGATAATTGATGGTGG+CGG | + | chr7_3:34325573-34325592 | None:intergenic | 30.0% |
| AACACAGAACATCACAAAAA+TGG | + | chr7_3:34325682-34325701 | None:intergenic | 30.0% | |
| GTACGATCAACATAAACAAA+AGG | - | chr7_3:34325703-34325722 | Msa1102140:CDS | 30.0% | |
| TAACAAAAATAAAGGAGGCA+AGG | + | chr7_3:34325744-34325763 | None:intergenic | 30.0% | |
| CCTTTAGATTTGAGCAAAAA+AGG | + | chr7_3:34325934-34325953 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTGCTCAAATCTAA+AGG | - | chr7_3:34325931-34325950 | Msa1102140:CDS | 30.0% |
| ATGATGTTACTCGATTCTAA+CGG | + | chr7_3:34325977-34325996 | None:intergenic | 30.0% | |
| ! | CATCATAAAGCACATTGATT+TGG | - | chr7_3:34325991-34326010 | Msa1102140:CDS | 30.0% |
| ATAAATAACCATCACTCTTG+TGG | + | chr7_3:34326021-34326040 | None:intergenic | 30.0% | |
| CAAGAGTGATGGTTATTTAT+CGG | - | chr7_3:34326021-34326040 | Msa1102140:CDS | 30.0% | |
| AACCGAAATAACAAATGTGA+CGG | - | chr7_3:34326052-34326071 | Msa1102140:CDS | 30.0% | |
| TTAATTCTCGCAAACGTAAA+CGG | - | chr7_3:34326179-34326198 | Msa1102140:CDS | 30.0% | |
| !! | GCACATCAATTAGTATTGAT+TGG | + | chr7_3:34326616-34326635 | None:intergenic | 30.0% |
| ATCCAAATCATGTGATTTAG+GGG | + | chr7_3:34326701-34326720 | None:intergenic | 30.0% | |
| GAATCCAAATCATGTGATTT+AGG | + | chr7_3:34326703-34326722 | None:intergenic | 30.0% | |
| GATTATTCAATGAATCACTG+TGG | - | chr7_3:34327003-34327022 | Msa1102140:intron | 30.0% | |
| GAAACTTTATGCTTTACAGA+AGG | - | chr7_3:34327084-34327103 | Msa1102140:intron | 30.0% | |
| ! | TGAATTTGAGACGTAGTAAA+AGG | - | chr7_3:34327164-34327183 | Msa1102140:intron | 30.0% |
| !!! | ACAAGATCTGTTTTAGTAGT+AGG | + | chr7_3:34327508-34327527 | None:intergenic | 30.0% |
| ACTACTAAAACAGATCTTGT+TGG | - | chr7_3:34327508-34327527 | Msa1102140:CDS | 30.0% | |
| ATGAAGCTGAAGTTTGAATT+GGG | - | chr7_3:34327610-34327629 | Msa1102140:CDS | 30.0% | |
| CATTGGGGATTTGATAAAAT+GGG | - | chr7_3:34327646-34327665 | Msa1102140:CDS | 30.0% | |
| !!! | AAAAATACTTGTTTTGGGAG+GGG | + | chr7_3:34327741-34327760 | None:intergenic | 30.0% |
| !!! | CAAAAATACTTGTTTTGGGA+GGG | + | chr7_3:34327742-34327761 | None:intergenic | 30.0% |
| ! | TTGATTTGATAAGCCATTTG+AGG | - | chr7_3:34327990-34328009 | Msa1102140:five_prime_UTR | 30.0% |
| ACAGAACATCACAAAAATGG+TGG | + | chr7_3:34325679-34325698 | None:intergenic | 35.0% | |
| TCAGTAAAAGTTTCAGCTTC+AGG | + | chr7_3:34325803-34325822 | None:intergenic | 35.0% | |
| ACTGAAATTCATAGAAACGG+TGG | - | chr7_3:34325818-34325837 | Msa1102140:CDS | 35.0% | |
| ATAGTGCAGTTCAAAACCTT+GGG | - | chr7_3:34325864-34325883 | Msa1102140:CDS | 35.0% | |
| TGATGTTACTCGATTCTAAC+GGG | + | chr7_3:34325976-34325995 | None:intergenic | 35.0% | |
| !! | CACCGTCACATTTGTTATTT+CGG | + | chr7_3:34326057-34326076 | None:intergenic | 35.0% |
| TAATTCTCGCAAACGTAAAC+GGG | - | chr7_3:34326180-34326199 | Msa1102140:CDS | 35.0% | |
| ACCATTAACAGAACCATCAA+AGG | - | chr7_3:34326219-34326238 | Msa1102140:CDS | 35.0% | |
| CCATTAACAGAACCATCAAA+GGG | - | chr7_3:34326220-34326239 | Msa1102140:CDS | 35.0% | |
| CATTAACAGAACCATCAAAG+GGG | - | chr7_3:34326221-34326240 | Msa1102140:CDS | 35.0% | |
| TTGGATGATGATCCATAGTT+TGG | + | chr7_3:34326328-34326347 | None:intergenic | 35.0% | |
| AAACTATGGATCATCATCCA+AGG | - | chr7_3:34326327-34326346 | Msa1102140:CDS | 35.0% | |
| !! | ATGTCAAAACATTCTGGTTC+AGG | + | chr7_3:34326421-34326440 | None:intergenic | 35.0% |
| CCATTCATGTCAAAACATTC+TGG | + | chr7_3:34326427-34326446 | None:intergenic | 35.0% | |
| !!! | CCAGAATGTTTTGACATGAA+TGG | - | chr7_3:34326424-34326443 | Msa1102140:intron | 35.0% |
| ATTGATGTGCGTATCTTTGT+TGG | - | chr7_3:34326626-34326645 | Msa1102140:intron | 35.0% | |
| TACCCCTAAATCACATGATT+TGG | - | chr7_3:34326696-34326715 | Msa1102140:intron | 35.0% | |
| CCAACTAAAAAGCCTTGAAA+CGG | - | chr7_3:34326758-34326777 | Msa1102140:intron | 35.0% | |
| TTATGCTTTACAGAAGGTGA+AGG | - | chr7_3:34327090-34327109 | Msa1102140:intron | 35.0% | |
| ! | TCTATGTCTCTTAAGTTGCA+TGG | - | chr7_3:34327190-34327209 | Msa1102140:intron | 35.0% |
| TTCTTCTTGATCACAACATC+TGG | + | chr7_3:34327259-34327278 | None:intergenic | 35.0% | |
| CACGAGAATCATCACTAAAT+GGG | + | chr7_3:34327363-34327382 | None:intergenic | 35.0% | |
| TCACGAGAATCATCACTAAA+TGG | + | chr7_3:34327364-34327383 | None:intergenic | 35.0% | |
| !! | CGTGATAAGTTTGTTTCTGT+TGG | - | chr7_3:34327379-34327398 | Msa1102140:CDS | 35.0% |
| !! | AATGGACTGGTGTAGTTTAT+GGG | - | chr7_3:34327428-34327447 | Msa1102140:CDS | 35.0% |
| GGTCTTGAATCATCTTTAAC+AGG | + | chr7_3:34327487-34327506 | None:intergenic | 35.0% | |
| ! | AAAACAGATCTTGTTGGTAG+AGG | - | chr7_3:34327514-34327533 | Msa1102140:CDS | 35.0% |
| GATGAAGCTGAAGTTTGAAT+TGG | - | chr7_3:34327609-34327628 | Msa1102140:CDS | 35.0% | |
| ! | CCATTTTATCAAATCCCCAA+TGG | + | chr7_3:34327648-34327667 | None:intergenic | 35.0% |
| CCATTGGGGATTTGATAAAA+TGG | - | chr7_3:34327645-34327664 | Msa1102140:CDS | 35.0% | |
| TTTCTTCATCACTAGTCCAT+TGG | + | chr7_3:34327687-34327706 | None:intergenic | 35.0% | |
| !!! | CCAAAAATACTTGTTTTGGG+AGG | + | chr7_3:34327743-34327762 | None:intergenic | 35.0% |
| ! | CCTCCCAAAACAAGTATTTT+TGG | - | chr7_3:34327740-34327759 | Msa1102140:CDS | 35.0% |
| !! | CTCTTTTGAAAGTAACTGGA+CGG | + | chr7_3:34327772-34327791 | None:intergenic | 35.0% |
| !! | TGTCCTCTTTTGAAAGTAAC+TGG | + | chr7_3:34327776-34327795 | None:intergenic | 35.0% |
| AAAGAGGACAAGAAAAGACA+TGG | - | chr7_3:34327786-34327805 | Msa1102140:five_prime_UTR | 35.0% | |
| ! | GAAGTCGAATTTGGATCTTT+TGG | - | chr7_3:34327895-34327914 | Msa1102140:five_prime_UTR | 35.0% |
| !! | TTTGGATCTTTTGGTGGTTT+TGG | - | chr7_3:34327904-34327923 | Msa1102140:five_prime_UTR | 35.0% |
| !! | TTGGATCTTTTGGTGGTTTT+GGG | - | chr7_3:34327905-34327924 | Msa1102140:five_prime_UTR | 35.0% |
| AGTGTTCAGAGAACAAGTAA+TGG | - | chr7_3:34327965-34327984 | Msa1102140:five_prime_UTR | 35.0% | |
| ACCTATCTCTTCATACTGCT+AGG | - | chr7_3:34325629-34325648 | Msa1102140:CDS | 40.0% | |
| CCTATCTCTTCATACTGCTA+GGG | - | chr7_3:34325630-34325649 | Msa1102140:CDS | 40.0% | |
| GGTGACATCAAGGAAATGAA+GGG | + | chr7_3:34325658-34325677 | None:intergenic | 40.0% | |
| TGGTGACATCAAGGAAATGA+AGG | + | chr7_3:34325659-34325678 | None:intergenic | 40.0% | |
| ! | CAAAAATGGTGGTGACATCA+AGG | + | chr7_3:34325668-34325687 | None:intergenic | 40.0% |
| CATAAACAAAAGGGCAAGCT+AGG | - | chr7_3:34325713-34325732 | Msa1102140:CDS | 40.0% | |
| GATAGTGCAGTTCAAAACCT+TGG | - | chr7_3:34325863-34325882 | Msa1102140:CDS | 40.0% | |
| TTGGTTAACCACAAGAGTGA+TGG | - | chr7_3:34326010-34326029 | Msa1102140:CDS | 40.0% | |
| ! | TACCATCACCGTTGACATTT+TGG | + | chr7_3:34326081-34326100 | None:intergenic | 40.0% |
| ! | AATGTCAACGGTGATGGTAA+TGG | - | chr7_3:34326082-34326101 | Msa1102140:CDS | 40.0% |
| !! | AAAATTGGGCACTGGTGTTA+AGG | - | chr7_3:34326117-34326136 | Msa1102140:CDS | 40.0% |
| TCTGTTAATGGTTGAGCTAC+AGG | + | chr7_3:34326211-34326230 | None:intergenic | 40.0% | |
| ! | CCCTTTGATGGTTCTGTTAA+TGG | + | chr7_3:34326223-34326242 | None:intergenic | 40.0% |
| TTATACTCCTTCCCCTTTGA+TGG | + | chr7_3:34326235-34326254 | None:intergenic | 40.0% | |
| ! | TCAAAGGGGAAGGAGTATAA+AGG | - | chr7_3:34326235-34326254 | Msa1102140:CDS | 40.0% |
| ACATTTCTGTTCAGATGCTG+AGG | - | chr7_3:34326266-34326285 | Msa1102140:CDS | 40.0% | |
| CATTTCTGTTCAGATGCTGA+GGG | - | chr7_3:34326267-34326286 | Msa1102140:CDS | 40.0% | |
| AAGCATGCAGAACCAAACTA+TGG | - | chr7_3:34326313-34326332 | Msa1102140:CDS | 40.0% | |
| TGTTGGATAGCGATCACAAT+AGG | - | chr7_3:34326643-34326662 | Msa1102140:intron | 40.0% | |
| ! | ACATGATTTGGATTCTGCTG+TGG | - | chr7_3:34326708-34326727 | Msa1102140:intron | 40.0% |
| ! | CATGATTTGGATTCTGCTGT+GGG | - | chr7_3:34326709-34326728 | Msa1102140:intron | 40.0% |
| !! | CCGTTTCAAGGCTTTTTAGT+TGG | + | chr7_3:34326761-34326780 | None:intergenic | 40.0% |
| !! | CGTGCAAACTGGTTTGTAAA+AGG | - | chr7_3:34326788-34326807 | Msa1102140:intron | 40.0% |
| AGAAACCGAATCCTCATACT+TGG | + | chr7_3:34327125-34327144 | None:intergenic | 40.0% | |
| ! | TATGAGGATTCGGTTTCTCT+TGG | - | chr7_3:34327127-34327146 | Msa1102140:intron | 40.0% |
| GTCTCAAATTCATCGTACCT+TGG | + | chr7_3:34327156-34327175 | None:intergenic | 40.0% | |
| ! | GTCTCTTAAGTTGCATGGTA+TGG | - | chr7_3:34327195-34327214 | Msa1102140:intron | 40.0% |
| GGAATCAGAAAAAAGTCCCA+TGG | - | chr7_3:34327216-34327235 | Msa1102140:CDS | 40.0% | |
| !! | TTGCCAGTTGTTTTCTCCAT+GGG | + | chr7_3:34327235-34327254 | None:intergenic | 40.0% |
| !! | TTTGCCAGTTGTTTTCTCCA+TGG | + | chr7_3:34327236-34327255 | None:intergenic | 40.0% |
| !!! | CTTTTTTCTCACAGCTGCTT+TGG | + | chr7_3:34327293-34327312 | None:intergenic | 40.0% |
| TAAACTACACCAGTCCATTG+CGG | + | chr7_3:34327427-34327446 | None:intergenic | 40.0% | |
| !! | CAATGGACTGGTGTAGTTTA+TGG | - | chr7_3:34327427-34327446 | Msa1102140:CDS | 40.0% |
| AATCGTTAGGCACACAAGTA+TGG | - | chr7_3:34327461-34327480 | Msa1102140:CDS | 40.0% | |
| GATTGCATATTGCTGCAAAC+AGG | - | chr7_3:34327587-34327606 | Msa1102140:CDS | 40.0% | |
| ! | TGGGTTCTGCATTTTACCAT+TGG | - | chr7_3:34327629-34327648 | Msa1102140:CDS | 40.0% |
| ! | GGGTTCTGCATTTTACCATT+GGG | - | chr7_3:34327630-34327649 | Msa1102140:CDS | 40.0% |
| ! | GGTTCTGCATTTTACCATTG+GGG | - | chr7_3:34327631-34327650 | Msa1102140:CDS | 40.0% |
| ! | CGTCCAGTTACTTTCAAAAG+AGG | - | chr7_3:34327770-34327789 | Msa1102140:exon | 40.0% |
| CTATCAGAATCGAGTGACTT+CGG | - | chr7_3:34327849-34327868 | Msa1102140:five_prime_UTR | 40.0% | |
| ! | GATGATGACGAAGTCGAATT+TGG | - | chr7_3:34327886-34327905 | Msa1102140:five_prime_UTR | 40.0% |
| ! | GTCGAATTTGGATCTTTTGG+TGG | - | chr7_3:34327898-34327917 | Msa1102140:five_prime_UTR | 40.0% |
| GTGTCCATCAACTGAATTCA+AGG | - | chr7_3:34327942-34327961 | Msa1102140:five_prime_UTR | 40.0% | |
| CACTCCTTGAATTCAGTTGA+TGG | + | chr7_3:34327949-34327968 | None:intergenic | 40.0% | |
| !! | ATAATTGATGGTGGCGGTGA+TGG | + | chr7_3:34325567-34325586 | None:intergenic | 45.0% |
| CCCTAGCAGTATGAAGAGAT+AGG | + | chr7_3:34325633-34325652 | None:intergenic | 45.0% | |
| TTCAGCTTCAGGCTGATCAA+GGG | + | chr7_3:34325792-34325811 | None:intergenic | 45.0% | |
| TTTCAGCTTCAGGCTGATCA+AGG | + | chr7_3:34325793-34325812 | None:intergenic | 45.0% | |
| GCAATGAGTTCACATACCCA+AGG | + | chr7_3:34325883-34325902 | None:intergenic | 45.0% | |
| GACGGTGTCCAAAATGTCAA+CGG | - | chr7_3:34326070-34326089 | Msa1102140:CDS | 45.0% | |
| GTCCAAAATGTCAACGGTGA+TGG | - | chr7_3:34326076-34326095 | Msa1102140:CDS | 45.0% | |
| GACGATGAAAAATTGGGCAC+TGG | - | chr7_3:34326109-34326128 | Msa1102140:CDS | 45.0% | |
| TGATATAACCGCCTCTTGTG+CGG | - | chr7_3:34326141-34326160 | Msa1102140:CDS | 45.0% | |
| AACAGAACCATCAAAGGGGA+AGG | - | chr7_3:34326225-34326244 | Msa1102140:CDS | 45.0% | |
| ! | AAGGGGAAGGAGTATAAAGG+AGG | - | chr7_3:34326238-34326257 | Msa1102140:CDS | 45.0% |
| GCATCTGAACAGAAATGTCC+TGG | + | chr7_3:34326264-34326283 | None:intergenic | 45.0% | |
| !! | AGCTTGCTGCTAACTGCTAT+AGG | - | chr7_3:34326573-34326592 | Msa1102140:intron | 45.0% |
| ! | GCTTGCTGCTAACTGCTATA+GGG | - | chr7_3:34326574-34326593 | Msa1102140:intron | 45.0% |
| TCGTGCCAAGTATGAGGATT+CGG | - | chr7_3:34327117-34327136 | Msa1102140:intron | 45.0% | |
| AGTCCCATGGAGAAAACAAC+TGG | - | chr7_3:34327229-34327248 | Msa1102140:CDS | 45.0% | |
| ! | TGTTGGTCCTCTTTTCCAAG+TGG | - | chr7_3:34327396-34327415 | Msa1102140:CDS | 45.0% |
| AAACTACACCAGTCCATTGC+GGG | + | chr7_3:34327426-34327445 | None:intergenic | 45.0% | |
| GGGAGTGACTCTAAATCGTT+AGG | - | chr7_3:34327448-34327467 | Msa1102140:CDS | 45.0% | |
| GGGATTTGATAAAATGGGCG+AGG | - | chr7_3:34327651-34327670 | Msa1102140:CDS | 45.0% | |
| !!! | GATCTTTTGGTGGTTTTGGG+AGG | - | chr7_3:34327908-34327927 | Msa1102140:five_prime_UTR | 45.0% |
| !!! | AATTTTATATACATTATTTT+AGG | + | chr7_3:34326543-34326562 | None:intergenic | 5.0% |
| AAACGGTGGTTGTCTTGTCG+AGG | - | chr7_3:34325832-34325851 | Msa1102140:CDS | 50.0% | |
| AACGGTGGTTGTCTTGTCGA+GGG | - | chr7_3:34325833-34325852 | Msa1102140:CDS | 50.0% | |
| !! | GTCAACGGTGATGGTAATGG+CGG | - | chr7_3:34326085-34326104 | Msa1102140:CDS | 50.0% |
| TGGCGGCGACGATGAAAAAT+TGG | - | chr7_3:34326102-34326121 | Msa1102140:CDS | 50.0% | |
| GGCGGCGACGATGAAAAATT+GGG | - | chr7_3:34326103-34326122 | Msa1102140:CDS | 50.0% | |
| ! | GAAGGAGTATAAAGGAGGCC+AGG | - | chr7_3:34326243-34326262 | Msa1102140:CDS | 50.0% |
| GCGCAACCTTGAAATGGACA+GGG | - | chr7_3:34326731-34326750 | Msa1102140:intron | 50.0% | |
| CAACCTTGAAATGGACAGGG+TGG | - | chr7_3:34326734-34326753 | Msa1102140:intron | 50.0% | |
| GCACGATAGTGTCCGTTTCA+AGG | + | chr7_3:34326773-34326792 | None:intergenic | 50.0% | |
| ACGGACACTATCGTGCAAAC+TGG | - | chr7_3:34326777-34326796 | Msa1102140:intron | 50.0% | |
| TCGGTTTCTCTTGGTCACCA+AGG | - | chr7_3:34327136-34327155 | Msa1102140:intron | 50.0% | |
| GGGACTTCCACTTGGAAAAG+AGG | + | chr7_3:34327406-34327425 | None:intergenic | 50.0% | |
| ! | CTTGTTGGTAGAGGAAGACG+AGG | - | chr7_3:34327523-34327542 | Msa1102140:CDS | 50.0% |
| GCGAGGAAGTTTCACTCCAA+TGG | - | chr7_3:34327668-34327687 | Msa1102140:CDS | 50.0% | |
| ! | GTGGCGGTGATGGTACTAAC+TGG | + | chr7_3:34325557-34325576 | None:intergenic | 55.0% |
| AACCGCCTCTTGTGCGGAAA+CGG | - | chr7_3:34326147-34326166 | Msa1102140:CDS | 55.0% | |
| CTTCTCCGTTTCCGCACAAG+AGG | + | chr7_3:34326155-34326174 | None:intergenic | 55.0% | |
| CTCTTGTGCGGAAACGGAGA+AGG | - | chr7_3:34326153-34326172 | Msa1102140:CDS | 55.0% | |
| ! | GAGGGCACGAGATGTTCTGT+CGG | - | chr7_3:34326285-34326304 | Msa1102140:CDS | 55.0% |
| CTGTGGGCGCAACCTTGAAA+TGG | - | chr7_3:34326725-34326744 | Msa1102140:intron | 55.0% | |
| GGCGCAACCTTGAAATGGAC+AGG | - | chr7_3:34326730-34326749 | Msa1102140:intron | 55.0% | |
| GGACCACCCTGTCCATTTCA+AGG | + | chr7_3:34326740-34326759 | None:intergenic | 55.0% | |
| GGTGCATCGTGCCAAGTATG+AGG | - | chr7_3:34327111-34327130 | Msa1102140:intron | 55.0% | |
| TCCAAGTGGAAGTCCCGCAA+TGG | - | chr7_3:34327410-34327429 | Msa1102140:CDS | 55.0% | |
| TCCATTGCGGGACTTCCACT+TGG | + | chr7_3:34327414-34327433 | None:intergenic | 55.0% | |
| CTCCGTTTCCGCACAAGAGG+CGG | + | chr7_3:34326152-34326171 | None:intergenic | 60.0% | |
| GTGGAAGTCCCGCAATGGAC+TGG | - | chr7_3:34327415-34327434 | Msa1102140:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 34325525 | 34328020 | 34325525 | ID=Msa1102140;Name=Msa1102140 |
| chr7_3 | mRNA | 34325525 | 34328020 | 34325525 | ID=Msa1102140-mRNA-1;Parent=Msa1102140;Name=Msa1102140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=248|1|1|1|1|1|2|36|485 |
| chr7_3 | exon | 34325525 | 34326442 | 34325525 | ID=Msa1102140-mRNA-1:exon:7287;Parent=Msa1102140-mRNA-1 |
| chr7_3 | exon | 34327197 | 34328020 | 34327197 | ID=Msa1102140-mRNA-1:exon:7286;Parent=Msa1102140-mRNA-1 |
| chr7_3 | five_prime_UTR | 34327773 | 34328020 | 34327773 | ID=Msa1102140-mRNA-1:five_prime_utr;Parent=Msa1102140-mRNA-1 |
| chr7_3 | CDS | 34327197 | 34327772 | 34327197 | ID=Msa1102140-mRNA-1:cds;Parent=Msa1102140-mRNA-1 |
| chr7_3 | CDS | 34325561 | 34326442 | 34325561 | ID=Msa1102140-mRNA-1:cds;Parent=Msa1102140-mRNA-1 |
| chr7_3 | three_prime_UTR | 34325525 | 34325560 | 34325525 | ID=Msa1102140-mRNA-1:three_prime_utr;Parent=Msa1102140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
