AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0579200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579200 MtrunA17_Chr4g0043691 96.838 1423 42 1 1 1423 1 1420 0.0 2855
Msa0579200 MtrunA17_Chr2g0311141 51.299 154 73 1 1 154 97 248 4.64e-40 157
Msa0579200 MtrunA17_Chr3g0081541 40.000 140 81 1 4 143 226 362 1.45e-26 117
Msa0579200 MtrunA17_Chr3g0081571 38.650 163 96 2 19 181 312 470 1.51e-26 117
Msa0579200 MtrunA17_Chr3g0131611 43.262 141 77 1 15 155 12 149 7.18e-26 113
Msa0579200 MtrunA17_Chr7g0243491 38.272 162 93 3 14 172 30 187 1.16e-24 108
Msa0579200 MtrunA17_Chr8g0388501 37.692 130 75 2 19 144 181 308 7.66e-18 86.7
Msa0579200 MtrunA17_Chr1g0179041 56.410 78 32 1 77 154 129 204 2.73e-17 87.0
Msa0579200 MtrunA17_Chr3g0120061 37.984 129 74 2 19 143 190 316 3.05e-17 84.7
Msa0579200 MtrunA17_Chr7g0225451 39.695 131 70 3 19 145 169 294 5.24e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579200 AT2G35140.5 45.455 198 105 3 2 197 6 202 3.14e-42 168
Msa0579200 AT2G35140.1 45.455 198 105 3 2 197 6 202 3.14e-42 168
Msa0579200 AT2G35140.4 45.455 198 105 3 2 197 6 202 3.14e-42 168
Msa0579200 AT2G35140.2 45.455 198 105 3 2 197 6 202 3.14e-42 168
Msa0579200 AT2G35140.3 45.455 198 105 3 2 197 6 202 3.14e-42 168
Msa0579200 AT2G35140.6 45.455 198 105 3 2 197 32 228 4.42e-42 168
Msa0579200 AT3G11000.1 43.056 144 76 2 19 159 13 153 6.54e-26 114
Msa0579200 AT3G11000.2 43.056 144 76 2 19 159 132 272 6.47e-25 112
Msa0579200 AT5G61910.1 43.448 145 74 4 19 160 63 202 9.03e-25 112
Msa0579200 AT5G61910.2 43.448 145 74 4 19 160 63 202 9.03e-25 112
Msa0579200 AT5G61910.3 43.448 145 74 4 19 160 67 206 9.21e-25 112
Msa0579200 AT5G61910.5 43.448 145 74 4 19 160 63 202 1.18e-24 112
Msa0579200 AT5G61910.4 43.448 145 74 4 19 160 63 202 5.74e-24 110
Msa0579200 AT5G01660.3 39.130 138 81 1 19 153 20 157 1.31e-23 107
Msa0579200 AT2G32910.1 42.748 131 72 1 13 143 315 442 2.02e-23 107
Msa0579200 AT5G01660.2 38.462 143 85 1 14 153 15 157 3.43e-23 107
Msa0579200 AT5G01660.1 38.462 143 85 1 14 153 15 157 3.43e-23 107
Msa0579200 AT3G27090.1 37.500 128 74 2 19 142 164 289 1.15e-15 80.1
Msa0579200 AT3G27090.2 37.500 128 74 2 19 142 164 289 1.15e-15 80.1
Msa0579200 AT3G27090.3 37.500 128 74 2 19 142 164 289 1.15e-15 80.1
Msa0579200 AT5G42050.1 37.209 129 75 2 19 143 218 344 1.16e-15 80.9

Find 300 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGCACTCTTGTTGAAATT+TGG 0.130590 4_1:+83831739 None:intergenic
AAAGATGGTTCTGAATATTT+AGG 0.161920 4_1:-83830221 Msa0579200:CDS
ACAACTTTGGTTGTTGTATT+AGG 0.178483 4_1:+83831883 None:intergenic
TGATAATCACAAATCATATT+TGG 0.190474 4_1:-83832751 Msa0579200:CDS
CTACCATACAATACAGAATT+TGG 0.190782 4_1:+83832933 None:intergenic
AAGTTTAACTTTGGGCTATC+TGG 0.226498 4_1:-83834132 Msa0579200:CDS
CCTATCCCTTCTTCTGATAT+TGG 0.229481 4_1:-83832813 Msa0579200:CDS
CTGATGTTCCTCTGGCAAAT+TGG 0.235548 4_1:-83832647 Msa0579200:CDS
AAAGAACTTTGCTCTAAATT+AGG 0.241063 4_1:+83833242 None:intergenic
CCTTGAGAACAACGATTATA+TGG 0.243470 4_1:-83833468 Msa0579200:CDS
CGTAATCATAAAGATGTTAT+TGG 0.250961 4_1:-83831649 Msa0579200:CDS
TTCAGGCAGCTACCATCTTT+TGG 0.253786 4_1:-83833098 Msa0579200:CDS
AGGAGCTGACGAAGACTTTA+AGG 0.258999 4_1:+83832833 None:intergenic
TGTTCAAAATGACAGAGTTT+TGG 0.265544 4_1:-83833786 Msa0579200:CDS
GCAATTGCTGACACCCTTCC+TGG 0.267730 4_1:-83830749 Msa0579200:CDS
TCAAATCAGTAGTTTGAAAA+AGG 0.292255 4_1:-83832151 Msa0579200:CDS
TGCAGTATCCAGAGAGAGTT+TGG 0.300252 4_1:+83833544 None:intergenic
GGCGAAGTTGGAAGATCTTT+TGG 0.300392 4_1:-83833899 Msa0579200:CDS
TCTGATGATGTTAGAGTTCA+TGG 0.301959 4_1:-83833398 Msa0579200:CDS
ATTGGATCATGGATACGATA+TGG 0.302068 4_1:-83832595 Msa0579200:CDS
TCTGATCCATCATTTAATTC+AGG 0.305246 4_1:+83831277 None:intergenic
TGGGTATGTTGGTGATTATT+TGG 0.306546 4_1:-83833519 Msa0579200:CDS
TCCTCTGACCACTATTTCTT+AGG 0.314959 4_1:+83833333 None:intergenic
TAATGTAAAATCAGCATCTT+TGG 0.316051 4_1:-83830366 Msa0579200:CDS
ATGCACTCTTGTTGAAATTT+GGG 0.317527 4_1:+83831740 None:intergenic
GCCCTTCCTACATTATTTGA+TGG 0.319243 4_1:-83831475 Msa0579200:CDS
AAGATGGTTCTGAATATTTA+GGG 0.319524 4_1:-83830220 Msa0579200:CDS
AGTATTAGTATAGAATCTTT+AGG 0.320535 4_1:-83834661 Msa0579200:five_prime_UTR
TGTTTCAAGAAGGGATTGTT+TGG 0.323448 4_1:-83834533 Msa0579200:CDS
GGCGAAGCTGGAAGATCTTT+TGG 0.326727 4_1:-83833830 Msa0579200:CDS
CCTACTGAGTACGGCTCTAA+TGG 0.328108 4_1:+83833851 None:intergenic
GAGAAGGAGCCACAATCTTT+TGG 0.329390 4_1:+83830254 None:intergenic
TAATTTAGAGCAAAGTTCTT+TGG 0.331218 4_1:-83833240 Msa0579200:CDS
AGAACCATCTTTAGCTTCAA+TGG 0.336234 4_1:+83830232 None:intergenic
TTGCACAGGAAGTGCTTAAA+TGG 0.342320 4_1:+83833174 None:intergenic
TTCAGTATTGTTGCGCTGAT+TGG 0.359013 4_1:+83832359 None:intergenic
CTGTATTGTATGGTAGCAAC+AGG 0.363364 4_1:-83832926 Msa0579200:CDS
AGGTTAAGTTCACTGAGATT+TGG 0.363461 4_1:-83834221 Msa0579200:CDS
GGTCAAACGTGAAGAACATT+TGG 0.367396 4_1:-83834742 Msa0579200:five_prime_UTR
CTTCTTCTTCTTCATACTAC+AGG 0.368933 4_1:+83831972 None:intergenic
GATCCAATGAATCATCATAT+TGG 0.372445 4_1:+83832610 None:intergenic
TTCCTTCCGCAGTTGGTTGA+TGG 0.373418 4_1:+83833035 None:intergenic
GCAGCTAACAAGTTTAACTT+TGG 0.375668 4_1:-83834141 Msa0579200:CDS
CGACCCCACTTGGTGGGATA+AGG 0.380330 4_1:+83830414 None:intergenic
GGGTTCGGTGGCAGCGCAAT+AGG 0.380991 4_1:+83835307 None:intergenic
TGATGTTCCTCTGGCAAATT+GGG 0.381340 4_1:-83832646 Msa0579200:CDS
ATGCTCCTGGCTTAAACTTC+AGG 0.382193 4_1:-83833115 Msa0579200:CDS
AATGCACAGAAGGAGGAATA+TGG 0.384066 4_1:-83832462 Msa0579200:CDS
CAGTACTCAGTTGGCGAAGT+TGG 0.385105 4_1:-83833911 Msa0579200:CDS
CTCTCTCTGGATACTGCAAA+TGG 0.388691 4_1:-83833539 Msa0579200:CDS
AGGCTTTGCCCTCAACTACT+TGG 0.390319 4_1:-83830682 Msa0579200:CDS
GTCAAACGTGAAGAACATTT+GGG 0.391681 4_1:-83834741 Msa0579200:five_prime_UTR
ACTGTTCATGCATTAATTGA+TGG 0.392786 4_1:-83830929 Msa0579200:CDS
CCGTACTCAGTAGGCGAAGC+TGG 0.393054 4_1:-83833842 Msa0579200:CDS
CCTTCCTTGCCGACCCCACT+TGG 0.400566 4_1:+83830404 None:intergenic
TTATGATTACGACTTGCATT+TGG 0.400853 4_1:+83831661 None:intergenic
TAATGTAGAAGCAGCATCTC+TGG 0.405710 4_1:-83831353 Msa0579200:CDS
AAATACAGATGGCACAATAT+TGG 0.408910 4_1:-83832966 Msa0579200:CDS
AGTCCAATATGATGATTCAT+TGG 0.408949 4_1:-83832613 Msa0579200:CDS
TAGTTGAGGGCAAAGCCTTT+TGG 0.409070 4_1:+83830687 None:intergenic
GTTTGGTGAGCGGGAAGGGA+AGG 0.411151 4_1:+83835272 None:intergenic
AAGCTGAAGACAAAACCTTT+TGG 0.411294 4_1:+83830879 None:intergenic
CATAAAGATGTTATTGGAAG+TGG 0.412051 4_1:-83831643 Msa0579200:CDS
ATCAATTAGTGATAGGTTGA+TGG 0.412834 4_1:-83833363 Msa0579200:CDS
AGAGAAGATTATGCCCGATA+TGG 0.413671 4_1:-83834483 Msa0579200:CDS
TTTCCAAATTCTGTATTGTA+TGG 0.415903 4_1:-83832936 Msa0579200:CDS
CATCACCCGTGAACCTTCCT+TGG 0.417989 4_1:+83830640 None:intergenic
AAGCTGAGAACAAAACCTTT+TGG 0.418098 4_1:+83831041 None:intergenic
ATCTTCAGTGGAGGAGAGAA+AGG 0.419463 4_1:-83831508 Msa0579200:CDS
CTATGCTGCCAAACTCTCTC+TGG 0.420000 4_1:-83833552 Msa0579200:CDS
TTATCAAACAGTGAAGAAAA+TGG 0.422408 4_1:+83832768 None:intergenic
CAGCTAACAAGTTTAACTTT+GGG 0.424155 4_1:-83834140 Msa0579200:CDS
GAAGACAAAGACATTAATCT+TGG 0.425242 4_1:-83831712 Msa0579200:CDS
AAGCTGAGAACAAAACCTTT+TGG 0.426140 4_1:+83831425 None:intergenic
TATGAGAAGAAACTACTTCA+TGG 0.426279 4_1:-83834443 Msa0579200:CDS
TCTTCTGATATTGGAAATAG+TGG 0.427106 4_1:-83832804 Msa0579200:CDS
AAGCAGATTCTGACGCCAAC+TGG 0.428407 4_1:+83832883 None:intergenic
AAGCTGAGGACAAAACCTTT+TGG 0.428688 4_1:+83830495 None:intergenic
CAAAGAAGGTCTTCTGAGCT+TGG 0.428981 4_1:-83833668 Msa0579200:CDS
TTCATCCTTGTTGTGTTCCA+AGG 0.432140 4_1:+83832275 None:intergenic
ATCATTGACCCTCATTGTTA+CGG 0.436015 4_1:+83834634 None:intergenic
ATCTGCCTGTCTTCTACAAC+AGG 0.437441 4_1:-83833265 Msa0579200:CDS
ATAAAGATTGCACCGAAAAC+CGG 0.438890 4_1:+83834581 None:intergenic
TCCTTGCCGACCCCACTTGG+TGG 0.439527 4_1:+83830407 None:intergenic
TTTGGTGAGCGGGAAGGGAA+GGG 0.444058 4_1:+83835273 None:intergenic
CACCATACATGAACCTTCCT+TGG 0.444248 4_1:+83830832 None:intergenic
GTTTCAAGAAGGGATTGTTT+GGG 0.450309 4_1:-83834532 Msa0579200:CDS
CTTTGGGCTATCTGGAGATC+AGG 0.450553 4_1:-83834124 Msa0579200:intron
CCCTTCCTACATTATTTGAT+GGG 0.452385 4_1:-83831474 Msa0579200:CDS
CAATGCTCGCGGAAAAGATC+CGG 0.452682 4_1:-83834600 Msa0579200:CDS
AGAGTGAGAATTTGTTGGTT+GGG 0.456658 4_1:-83831789 Msa0579200:CDS
AGATCTCTTTGAAAATGCCT+TGG 0.457007 4_1:-83832208 Msa0579200:CDS
CCATATAATCGTTGTTCTCA+AGG 0.457580 4_1:+83833468 None:intergenic
CACTTCATCAACTGAAGTAA+TGG 0.457780 4_1:+83832437 None:intergenic
CCAAGTGGGGTCGGCAAGGA+AGG 0.457919 4_1:-83830404 Msa0579200:CDS
ATTAAGTTCTGATGTTCCTC+TGG 0.459264 4_1:-83832655 Msa0579200:CDS
CGTTGAATTCCTTCCGCAGT+TGG 0.461142 4_1:+83833028 None:intergenic
GCAGGTCATCAATTAGTGAT+AGG 0.462592 4_1:-83833370 Msa0579200:CDS
AGGGAGAGAAGAGACGGGTT+CGG 0.462993 4_1:+83835292 None:intergenic
ATCTCTCTTCTTCCTCTGAC+TGG 0.463076 4_1:+83832227 None:intergenic
TGCCATTAAAAGATGAAAGC+AGG 0.463559 4_1:-83833610 Msa0579200:CDS
ACGCTTGAAATCAACAACTT+TGG 0.464373 4_1:+83831870 None:intergenic
ATTATATGGGCACACATCTC+AGG 0.465272 4_1:-83833454 Msa0579200:CDS
CCACTTGGTGGGATAAGGCT+TGG 0.465617 4_1:+83830419 None:intergenic
TTAGGTTTGGTGAGCGGGAA+GGG 0.465690 4_1:+83835268 None:intergenic
CCTAGCAAAGTGAATGCCTT+AGG 0.466361 4_1:+83834380 None:intergenic
AGTTAGAACCGGAGGTTCCT+AGG 0.468383 4_1:-83833970 Msa0579200:CDS
TGCACGTGATGTTAACAAAC+GGG 0.472052 4_1:-83832496 Msa0579200:CDS
CCTAAGGCATTCACTTTGCT+AGG 0.473973 4_1:-83834380 Msa0579200:CDS
GATGAAAGTTTGAGGAAGAA+AGG 0.475284 4_1:-83832087 Msa0579200:CDS
GATTCTCAAAATAGCAATCA+TGG 0.475985 4_1:-83832561 Msa0579200:CDS
TTCAGCTCCTTGTGTTGCAC+AGG 0.476509 4_1:+83833160 None:intergenic
TGCCTTGGATGATCTAAATA+CGG 0.478343 4_1:-83831932 Msa0579200:CDS
CTGTATGATTCAGATGCTCC+TGG 0.479009 4_1:-83833128 Msa0579200:CDS
ATGTGACAAGAAGTTTCAAC+TGG 0.480632 4_1:+83830176 None:intergenic
ACCTTTCCTGCATTAAATGA+TGG 0.482099 4_1:-83831091 Msa0579200:CDS
TTCCGCGAGCATTGTTGTTG+TGG 0.482131 4_1:+83834609 None:intergenic
TTCTCCATTGAAGCTAAAGA+TGG 0.482525 4_1:-83830236 Msa0579200:CDS
CAAGGAAGGTTCATGTATGA+TGG 0.485913 4_1:-83831377 Msa0579200:CDS
AGATTGCTCTGAAAATGCCT+TGG 0.485948 4_1:-83832121 Msa0579200:CDS
TTGGATCATGGATACGATAT+GGG 0.486675 4_1:-83832594 Msa0579200:CDS
AAAAGTAGCATCTCTGAAGA+TGG 0.486918 4_1:-83830993 Msa0579200:CDS
GGCATAATCTTCTCTACGAA+TGG 0.488960 4_1:+83834491 None:intergenic
ACAACAAGGATGAAAGCTTA+AGG 0.490749 4_1:-83832266 Msa0579200:CDS
TCATGCATTAATTGATGGAC+CGG 0.493185 4_1:-83830924 Msa0579200:CDS
TGGCAAGAAAAGATGACAGC+AGG 0.494172 4_1:-83833499 Msa0579200:CDS
CAAGGAAGGTTCATGTATGA+TGG 0.494249 4_1:-83830390 Msa0579200:CDS
TCAGTATTGTTGCGCTGATT+GGG 0.495031 4_1:+83832360 None:intergenic
CTCTTCATTCCAAGTAGTTG+AGG 0.496425 4_1:+83830673 None:intergenic
TTCATCCTCGTTGTGTTCCA+AGG 0.497384 4_1:+83832191 None:intergenic
CGACATGAACAAGTTAGAAC+CGG 0.497451 4_1:-83833981 Msa0579200:CDS
ACGGATTCCACAACTGTGAC+TGG 0.498542 4_1:-83831913 Msa0579200:CDS
TCTTCATTCCAAGTAGTTGA+GGG 0.499901 4_1:+83830674 None:intergenic
TATGATGATTCATTGGATCA+TGG 0.500586 4_1:-83832606 Msa0579200:CDS
AACGAAGAAAAGAGATTGCT+CGG 0.502419 4_1:-83832046 Msa0579200:CDS
AGTTGATGAAGTGATGGAAA+TGG 0.502770 4_1:-83832427 Msa0579200:CDS
TTTAGGTTTGGTGAGCGGGA+AGG 0.503324 4_1:+83835267 None:intergenic
GACAAAGACATTAATCTTGG+CGG 0.503998 4_1:-83831709 Msa0579200:CDS
AAGAGTGAGAATTTGTTGGT+TGG 0.504667 4_1:-83831790 Msa0579200:CDS
GCAACAATACTGAAAGTTTG+AGG 0.507451 4_1:-83832350 Msa0579200:CDS
ATGCACGTGATGTTAACAAA+CGG 0.508050 4_1:-83832497 Msa0579200:CDS
CCATTATTAATTCCAAAAGA+TGG 0.508188 4_1:+83833086 None:intergenic
GATTGCTCTGAAAATGCCTT+GGG 0.508618 4_1:-83832120 Msa0579200:CDS
TGATTGCTTTGAAAATGCCT+TGG 0.508748 4_1:-83832292 Msa0579200:CDS
AGATTGCTTTGAAAATGCCT+TGG 0.509112 4_1:-83831947 Msa0579200:CDS
CGGATATTCTTGCAATGCCA+TGG 0.509137 4_1:+83832713 None:intergenic
ATCTTTAGCTTCAATGGAGA+AGG 0.510043 4_1:+83830238 None:intergenic
AGGAAGTGCTTAAATGGAAT+GGG 0.510847 4_1:+83833180 None:intergenic
GCATAATCTTCTCTACGAAT+GGG 0.510972 4_1:+83834492 None:intergenic
ACCCTTCCTGGATTAAATGA+TGG 0.511966 4_1:-83830737 Msa0579200:CDS
CAAGGAAGGTTCACGGGTGA+TGG 0.513168 4_1:-83830639 Msa0579200:CDS
AAGGGAAGGGAGAGAAGAGA+CGG 0.513199 4_1:+83835286 None:intergenic
GCTCTAGACATACGTCTCCT+AGG 0.515932 4_1:+83833953 None:intergenic
CTCCATCAACCAACTGCGGA+AGG 0.516261 4_1:-83833037 Msa0579200:CDS
CTTGAGAACAACGATTATAT+GGG 0.516396 4_1:-83833467 Msa0579200:CDS
TGGGTTCTTCTCACCTGAGC+AGG 0.517780 4_1:+83834347 None:intergenic
GACAAAATGCCAAAAGATTG+TGG 0.520977 4_1:-83830263 Msa0579200:CDS
TGAAGAGAGTTCTCATACCA+AGG 0.523096 4_1:-83830657 Msa0579200:CDS
TGAAGAGAGTTCTTGTACCA+AGG 0.523096 4_1:-83830849 Msa0579200:CDS
AGGGATACAATATCCTGCTC+AGG 0.524284 4_1:-83834360 Msa0579200:intron
TGAAACTTCTTGTCACATTG+AGG 0.525546 4_1:-83830171 Msa0579200:CDS
GTCAGAATCTGCTTTATATG+AGG 0.527755 4_1:-83832874 Msa0579200:CDS
CTCATACCAAGGAAGGTTCA+CGG 0.528782 4_1:-83830646 Msa0579200:CDS
AAACAGAAACAATGCACAGA+AGG 0.529404 4_1:-83832472 Msa0579200:CDS
CAGGAAGTGCTTAAATGGAA+TGG 0.530324 4_1:+83833179 None:intergenic
GAGAAGAGAATGTTTCAAGA+AGG 0.530490 4_1:-83834543 Msa0579200:CDS
TGAAGAGAGTTCTCATACCG+AGG 0.530516 4_1:-83831203 Msa0579200:CDS
TCTGGTCCATCATTTAATCC+AGG 0.532393 4_1:+83830731 None:intergenic
AGAAGAGAATGTTTCAAGAA+GGG 0.533139 4_1:-83834542 Msa0579200:CDS
ATCCATCATTTAATTCAGGA+AGG 0.533991 4_1:+83831281 None:intergenic
GGTCATGGAATGCTTGATGA+AGG 0.534269 4_1:-83833878 Msa0579200:CDS
TACTTCAGTTGATGAAGTGA+TGG 0.534655 4_1:-83832433 Msa0579200:CDS
CTATTTCCAATATCAGAAGA+AGG 0.535862 4_1:+83832807 None:intergenic
TACCGAGGGAAGTTCATGTA+TGG 0.537020 4_1:-83831188 Msa0579200:CDS
TACCAAGGAAGGTTCATGTA+TGG 0.538200 4_1:-83830834 Msa0579200:CDS
TCTGATCCATCATTTAATGC+AGG 0.538711 4_1:+83831085 None:intergenic
TCTGAATATTTAGGGAATGC+CGG 0.540667 4_1:-83830212 Msa0579200:CDS
CGGAAGGAATTCAACGAGTA+GGG 0.541736 4_1:-83833021 Msa0579200:CDS
GCCACAGAATTTATCTTCAG+TGG 0.542025 4_1:-83831520 Msa0579200:CDS
ATACGTCTCCTAGGAACCTC+CGG 0.542564 4_1:+83833962 None:intergenic
TATCATACATGAACCATCCT+TGG 0.542898 4_1:+83830448 None:intergenic
ACTCTTCATGCACTAAATGA+TGG 0.544048 4_1:-83830545 Msa0579200:CDS
TTCATCCTCATTGTGTCCCA+AGG 0.544133 4_1:+83832104 None:intergenic
GAGAGTTCTTGTACCAAGGA+AGG 0.545936 4_1:-83830845 Msa0579200:CDS
AGAACATTTGGGGTATATGA+TGG 0.546372 4_1:-83834730 Msa0579200:five_prime_UTR
CTGATATTGGAAATAGTGGC+AGG 0.546936 4_1:-83832800 Msa0579200:CDS
TCTCTCTGGATACTGCAAAT+GGG 0.547137 4_1:-83833538 Msa0579200:CDS
AGCTGCCTGAAGTTTAAGCC+AGG 0.549207 4_1:+83833110 None:intergenic
ATCGTGCAGAATATTCTCCT+TGG 0.549495 4_1:+83833729 None:intergenic
CCAGCTTCGCCTACTGAGTA+CGG 0.550685 4_1:+83833842 None:intergenic
GGACTATAATGTTCATCCCA+TGG 0.550701 4_1:-83832730 Msa0579200:CDS
TTAGAGTTCATGGTGATGGC+AGG 0.551415 4_1:-83833388 Msa0579200:CDS
CCATTAGAGCCGTACTCAGT+AGG 0.551970 4_1:-83833851 Msa0579200:CDS
TTAGGCCTGTTGTAGAAGAC+AGG 0.552979 4_1:+83833260 None:intergenic
CCTTGCCGACCCCACTTGGT+GGG 0.554212 4_1:+83830408 None:intergenic
GGTGAAGACCTAAGAAATAG+TGG 0.554305 4_1:-83833341 Msa0579200:CDS
TCAATTAGTGATAGGTTGAT+GGG 0.554469 4_1:-83833362 Msa0579200:CDS
GCGGAAGGAATTCAACGAGT+AGG 0.555263 4_1:-83833022 Msa0579200:CDS
GTCTTCATTGCAAGAAGCTG+AGG 0.555881 4_1:+83830481 None:intergenic
AGGTAGCAATATCGATCCTA+AGG 0.556717 4_1:-83834396 Msa0579200:CDS
CGAATGGGATATAAGAAGAC+GGG 0.557641 4_1:+83834507 None:intergenic
GAAGACAGGCAGATCGACAT+TGG 0.557940 4_1:+83833274 None:intergenic
ACAATGAGGATGAAAGTTTG+AGG 0.558520 4_1:-83832095 Msa0579200:CDS
GCGTATCCACCTACACTGTA+TGG 0.559286 4_1:+83833431 None:intergenic
AAGGTCTTCTGAGCTTGGAG+TGG 0.559335 4_1:-83833663 Msa0579200:CDS
CATATAATCGTTGTTCTCAA+GGG 0.559394 4_1:+83833469 None:intergenic
ACAACGAGGATGAAAGTTTG+AGG 0.560145 4_1:-83832182 Msa0579200:CDS
TCTTCAGTGGAGGAGAGAAA+GGG 0.562156 4_1:-83831507 Msa0579200:CDS
TCTGACCCATCAAATAATGT+AGG 0.563664 4_1:+83831469 None:intergenic
TTGTTGCGCTGATTGGGTGT+TGG 0.565018 4_1:+83832366 None:intergenic
ACCCTTCCTGAATTAAATGA+TGG 0.565083 4_1:-83831283 Msa0579200:CDS
ACCCATCAAATAATGTAGGA+AGG 0.567596 4_1:+83831473 None:intergenic
GTCCATCATTTAATCCAGGA+AGG 0.568632 4_1:+83830735 None:intergenic
CTCTTCATTGCAAGAAGCCG+AGG 0.572492 4_1:+83831219 None:intergenic
CCCACCAAGTGGGGTCGGCA+AGG 0.572781 4_1:-83830408 Msa0579200:CDS
TGGTAATTATGCATCAAGAC+AGG 0.572791 4_1:+83833749 None:intergenic
ACAACGAGGATGAAAGTTTG+AGG 0.573671 4_1:-83832008 Msa0579200:CDS
GATTATACAAGTGGATATGT+TGG 0.573929 4_1:-83833641 Msa0579200:CDS
CACCATACATGAACTTCCCT+CGG 0.574114 4_1:+83831186 None:intergenic
CTAAGGCATTCACTTTGCTA+GGG 0.575167 4_1:-83834379 Msa0579200:CDS
GAGAGTTCTCATACCAAGGA+AGG 0.576498 4_1:-83830653 Msa0579200:CDS
GAATATTCTGCACGATACAA+TGG 0.576914 4_1:-83833722 Msa0579200:CDS
GACAGCTCTCATACCAAGGA+TGG 0.577808 4_1:-83830461 Msa0579200:CDS
GAGAGAAGAGACGGGTTCGG+TGG 0.579187 4_1:+83835295 None:intergenic
TTACGACTTGCATTTGGCAA+TGG 0.579633 4_1:+83831667 None:intergenic
ACATTGGAATCACGTAAACT+AGG 0.581051 4_1:+83833290 None:intergenic
CAAGGAAGGTTCATGTATGG+TGG 0.581118 4_1:-83830831 Msa0579200:CDS
TCATACCAAGGAAGGTTCAC+GGG 0.582696 4_1:-83830645 Msa0579200:CDS
CCAATATCAGAAGAAGGGAT+AGG 0.583349 4_1:+83832813 None:intergenic
ACATCAGAGCAGTACTCAGT+TGG 0.584878 4_1:-83833920 Msa0579200:CDS
AGATTGCTCGGAGAATGTCT+TGG 0.585472 4_1:-83832034 Msa0579200:CDS
TGATTTCAAGCGTCGAAGCA+AGG 0.586627 4_1:-83831860 Msa0579200:CDS
CGAGGGAAGTTCATGTATGG+TGG 0.587426 4_1:-83831185 Msa0579200:CDS
ATCCGTATTTAGATCATCCA+AGG 0.588020 4_1:+83831930 None:intergenic
CTTGGAGTGGATTATACAAG+TGG 0.588668 4_1:-83833650 Msa0579200:CDS
CACCTATGGAAGAGAGGAGG+AGG 0.588736 4_1:+83835243 None:intergenic
AAATGCCTTGGAACACAACA+AGG 0.589651 4_1:-83832280 Msa0579200:CDS
CTCAGGCCATACAGTGTAGG+TGG 0.589803 4_1:-83833437 Msa0579200:CDS
CTTATCCCACCAAGTGGGGT+CGG 0.590183 4_1:-83830413 Msa0579200:CDS
CAGAAACAATGCACAGAAGG+AGG 0.590268 4_1:-83832469 Msa0579200:CDS
CCCATCAAATAATGTAGGAA+GGG 0.590369 4_1:+83831474 None:intergenic
CATACAAAACTCTGGCCAGT+TGG 0.590866 4_1:-83832898 Msa0579200:CDS
TCCATCATTTAATGCAGGAA+AGG 0.592991 4_1:+83831090 None:intergenic
TAGGTTTACCGTAACAATGA+GGG 0.593041 4_1:-83834642 Msa0579200:exon
AGCACTTCCTGTGCAACACA+AGG 0.594010 4_1:-83833167 Msa0579200:CDS
GGATATTCTTGCAATGCCAT+GGG 0.597707 4_1:+83832714 None:intergenic
GATACTGCAAATGGGTATGT+TGG 0.597881 4_1:-83833530 Msa0579200:CDS
TATTTCCAATATCAGAAGAA+GGG 0.599016 4_1:+83832808 None:intergenic
AGGGAATGCATACAAAACTC+TGG 0.600459 4_1:-83832906 Msa0579200:CDS
TGAAGACAGCTCTCATACCA+AGG 0.600471 4_1:-83830465 Msa0579200:CDS
AACCTCCTCCTCTCTTCCAT+AGG 0.600733 4_1:-83835245 Msa0579200:intron
AACATCATCAGAAGGAATGT+CGG 0.601317 4_1:+83833409 None:intergenic
AGTTCTGTATGCACGAGTTG+TGG 0.602337 4_1:+83832996 None:intergenic
ATTTGATGGGTCAGAATGTG+CGG 0.603587 4_1:-83831461 Msa0579200:CDS
AAAAGCAGTATCTCTGAAGA+CGG 0.605385 4_1:-83831155 Msa0579200:CDS
TTAGGTTTACCGTAACAATG+AGG 0.607994 4_1:-83834643 Msa0579200:exon
TCCATCATTTAATTCAGGAA+GGG 0.608308 4_1:+83831282 None:intergenic
ATTGCCTCCAGTCACAGTTG+TGG 0.609147 4_1:+83831906 None:intergenic
AGGGAAGGGAGAGAAGAGAC+GGG 0.609610 4_1:+83835287 None:intergenic
ACGAATGGGATATAAGAAGA+CGG 0.613207 4_1:+83834506 None:intergenic
TATTGGAAGTGGATGTACAT+TGG 0.613937 4_1:-83831632 Msa0579200:CDS
CAAGCCTTATCCCACCAAGT+GGG 0.615163 4_1:-83830418 Msa0579200:CDS
AAGTGATGGAAATGGTTCGT+CGG 0.619342 4_1:-83832419 Msa0579200:CDS
AGAAGCAGCATCTCTGGAGA+AGG 0.620850 4_1:-83831347 Msa0579200:CDS
TTCGTCGGAGTCAAAGCCAC+CGG 0.622611 4_1:-83832404 Msa0579200:CDS
ACAGAATTTATCTTCAGTGG+AGG 0.623986 4_1:-83831517 Msa0579200:CDS
ACCTAAGAAATAGTGGTCAG+AGG 0.626596 4_1:-83833334 Msa0579200:CDS
AACTCAAAGACAAATACAGA+TGG 0.626859 4_1:-83832977 Msa0579200:CDS
AAACTCAAGTCACCAGTCAG+AGG 0.627950 4_1:-83832239 Msa0579200:CDS
TTCAAGGCTACTTCTAAGGG+AGG 0.630188 4_1:-83834416 Msa0579200:CDS
GAAGAGAGTTCTCATACCGA+GGG 0.630928 4_1:-83831202 Msa0579200:CDS
GGATACGATATGGGATGTCA+TGG 0.631953 4_1:-83832585 Msa0579200:CDS
AACCACAACAACAATGCTCG+CGG 0.637953 4_1:-83834611 Msa0579200:CDS
GCTAGTGTTATATCATGACT+CGG 0.641441 4_1:+83832693 None:intergenic
ATAACACTAGCAATGAACAA+TGG 0.642971 4_1:-83832681 Msa0579200:CDS
TCCACTGAAGATAAATTCTG+TGG 0.643618 4_1:+83831519 None:intergenic
TCCATCATTTAATCCAGGAA+GGG 0.647205 4_1:+83830736 None:intergenic
AAATTATCCCAATTTGCCAG+AGG 0.648990 4_1:+83832639 None:intergenic
AAGCCTTATCCCACCAAGTG+GGG 0.649098 4_1:-83830417 Msa0579200:CDS
TGAACTCTAACATCATCAGA+AGG 0.649743 4_1:+83833401 None:intergenic
AAATGCCTTGGGACACAATG+AGG 0.654400 4_1:-83832109 Msa0579200:CDS
TACACGCACCTATGGAAGAG+AGG 0.655936 4_1:+83835237 None:intergenic
GATGTTAGAGTTCATGGTGA+TGG 0.658181 4_1:-83833392 Msa0579200:CDS
AAATGATGGATCAGAATGTG+CGG 0.658186 4_1:-83831269 Msa0579200:CDS
CATCTCAGGCCATACAGTGT+AGG 0.659620 4_1:-83833440 Msa0579200:CDS
CCAAGCCTTATCCCACCAAG+TGG 0.661248 4_1:-83830419 Msa0579200:CDS
GTCTTGATGCATAATTACCA+AGG 0.664929 4_1:-83833746 Msa0579200:CDS
CATGAACAAGTTAGAACCGG+AGG 0.666115 4_1:-83833978 Msa0579200:CDS
AAATGATGGATCAGAATGTG+CGG 0.667244 4_1:-83830531 Msa0579200:CDS
AAATGATGGATCAGAATGTG+CGG 0.667244 4_1:-83831077 Msa0579200:CDS
TCAAGCGTCGAAGCAAGGTG+AGG 0.674009 4_1:-83831855 Msa0579200:CDS
AAATGATGGACCAGAATGTG+TGG 0.675680 4_1:-83830723 Msa0579200:CDS
CTTTCTCCATCAACCAACTG+CGG 0.679533 4_1:-83833041 Msa0579200:CDS
AAATGCCTTGGAACACAACG+AGG 0.681465 4_1:-83832196 Msa0579200:CDS
AATTGATGGACCGGAATGTG+TGG 0.682298 4_1:-83830915 Msa0579200:CDS
GAATGTCTTGGAACACAACG+AGG 0.690050 4_1:-83832022 Msa0579200:CDS
GATTCCACAACTGTGACTGG+AGG 0.694621 4_1:-83831910 Msa0579200:CDS
ACGCACCTATGGAAGAGAGG+AGG 0.698688 4_1:+83835240 None:intergenic
TGTATTGTATGGTAGCAACA+GGG 0.699914 4_1:-83832925 Msa0579200:CDS
TCAAACGTGAAGAACATTTG+GGG 0.710804 4_1:-83834740 Msa0579200:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAGGATTAATAATA+AGG + chr4_1:83830316-83830335 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTGTAAC+CGG - chr4_1:83830483-83830502 Msa0579200:CDS 10.0%
!!! TTGATTAATTACTGATTAAT+AGG - chr4_1:83830704-83830723 Msa0579200:CDS 15.0%
!! TAATAATAAGGAAAAGAATG+CGG + chr4_1:83830304-83830323 None:intergenic 20.0%
!! AGTATTAGTATAGAATCTTT+AGG - chr4_1:83830806-83830825 Msa0579200:CDS 20.0%
!! AAATAAAAACAAAGCCATAT+CGG + chr4_1:83831001-83831020 None:intergenic 20.0%
!! AATTATAGAATGAAGTAACT+GGG + chr4_1:83831142-83831161 None:intergenic 20.0%
!! AAATTATAGAATGAAGTAAC+TGG + chr4_1:83831143-83831162 None:intergenic 20.0%
!!! AAATGTGAAAGATTTTCAAA+AGG - chr4_1:83831396-83831415 Msa0579200:CDS 20.0%
!! TGATAATCACAAATCATATT+TGG - chr4_1:83832716-83832735 Msa0579200:CDS 20.0%
!!! AACACACTACTTTTTTTATT+TGG + chr4_1:83832936-83832955 None:intergenic 20.0%
!! CATAATCGAAATCGTATTTT+AGG - chr4_1:83830558-83830577 Msa0579200:CDS 25.0%
! AATAAAAACAAAGCCATATC+GGG + chr4_1:83831000-83831019 None:intergenic 25.0%
! TCAGCTAAAGTAAACAAAAA+TGG + chr4_1:83831206-83831225 None:intergenic 25.0%
!! TTTTAGTAAGCAAACAAAGA+AGG - chr4_1:83831785-83831804 Msa0579200:CDS 25.0%
!! AAAGAACTTTGCTCTAAATT+AGG + chr4_1:83832228-83832247 None:intergenic 25.0%
!! TAATTTAGAGCAAAGTTCTT+TGG - chr4_1:83832227-83832246 Msa0579200:CDS 25.0%
! CCATTATTAATTCCAAAAGA+TGG + chr4_1:83832384-83832403 None:intergenic 25.0%
!!! CCATCTTTTGGAATTAATAA+TGG - chr4_1:83832381-83832400 Msa0579200:CDS 25.0%
! TTTCCAAATTCTGTATTGTA+TGG - chr4_1:83832531-83832550 Msa0579200:CDS 25.0%
! TATTTCCAATATCAGAAGAA+GGG + chr4_1:83832662-83832681 None:intergenic 25.0%
! TTATCAAACAGTGAAGAAAA+TGG + chr4_1:83832702-83832721 None:intergenic 25.0%
!!! CACTACTTTTTTTATTTGGA+TGG + chr4_1:83832932-83832951 None:intergenic 25.0%
! TCAAATCAGTAGTTTGAAAA+AGG - chr4_1:83833316-83833335 Msa0579200:CDS 25.0%
! TAAAAAGAGTGAGAATTTGT+TGG - chr4_1:83833673-83833692 Msa0579200:CDS 25.0%
! CGTAATCATAAAGATGTTAT+TGG - chr4_1:83833818-83833837 Msa0579200:CDS 25.0%
!! TTTTAACATCATAATCACAC+TGG + chr4_1:83833865-83833884 None:intergenic 25.0%
! GGATAATAAAAATCACCAAA+AGG - chr4_1:83834027-83834046 Msa0579200:intron 25.0%
! TAATGTAAAATCAGCATCTT+TGG - chr4_1:83835101-83835120 Msa0579200:intron 25.0%
!!! AAAGATGGTTCTGAATATTT+AGG - chr4_1:83835246-83835265 Msa0579200:five_prime_UTR 25.0%
!!! AAGATGGTTCTGAATATTTA+GGG - chr4_1:83835247-83835266 Msa0579200:five_prime_UTR 25.0%
AAAGTGTAAAGCAGCATAAT+CGG + chr4_1:83830382-83830401 None:intergenic 30.0%
AACTGTAAATATTCAAACGC+CGG + chr4_1:83830505-83830524 None:intergenic 30.0%
! AGGTCAAATTTGTTTCAACT+AGG - chr4_1:83830578-83830597 Msa0579200:CDS 30.0%
AGAAGAGAATGTTTCAAGAA+GGG - chr4_1:83830925-83830944 Msa0579200:CDS 30.0%
TATGAGAAGAAACTACTTCA+TGG - chr4_1:83831024-83831043 Msa0579200:CDS 30.0%
!! TCGAAATATCTTTTCAGGAA+GGG + chr4_1:83831282-83831301 None:intergenic 30.0%
! CAGCTAACAAGTTTAACTTT+GGG - chr4_1:83831327-83831346 Msa0579200:CDS 30.0%
! ATTTTTGAACTGTTCTTTGC+AGG - chr4_1:83831441-83831460 Msa0579200:CDS 30.0%
! TGTTCAAAATGACAGAGTTT+TGG - chr4_1:83831681-83831700 Msa0579200:CDS 30.0%
! GTTCAAAATGACAGAGTTTT+GGG - chr4_1:83831682-83831701 Msa0579200:CDS 30.0%
GATTATACAAGTGGATATGT+TGG - chr4_1:83831826-83831845 Msa0579200:CDS 30.0%
CATATAATCGTTGTTCTCAA+GGG + chr4_1:83832001-83832020 None:intergenic 30.0%
CTTGAGAACAACGATTATAT+GGG - chr4_1:83832000-83832019 Msa0579200:CDS 30.0%
! ATCAATTAGTGATAGGTTGA+TGG - chr4_1:83832104-83832123 Msa0579200:CDS 30.0%
!! TCAATTAGTGATAGGTTGAT+GGG - chr4_1:83832105-83832124 Msa0579200:CDS 30.0%
AACTCAAAGACAAATACAGA+TGG - chr4_1:83832490-83832509 Msa0579200:CDS 30.0%
AAATACAGATGGCACAATAT+TGG - chr4_1:83832501-83832520 Msa0579200:CDS 30.0%
CTACCATACAATACAGAATT+TGG + chr4_1:83832537-83832556 None:intergenic 30.0%
CTATTTCCAATATCAGAAGA+AGG + chr4_1:83832663-83832682 None:intergenic 30.0%
TCTTCTGATATTGGAAATAG+TGG - chr4_1:83832663-83832682 Msa0579200:CDS 30.0%
ATAACACTAGCAATGAACAA+TGG - chr4_1:83832786-83832805 Msa0579200:CDS 30.0%
AGTCCAATATGATGATTCAT+TGG - chr4_1:83832854-83832873 Msa0579200:CDS 30.0%
GATCCAATGAATCATCATAT+TGG + chr4_1:83832860-83832879 None:intergenic 30.0%
TATGATGATTCATTGGATCA+TGG - chr4_1:83832861-83832880 Msa0579200:CDS 30.0%
GATTCTCAAAATAGCAATCA+TGG - chr4_1:83832906-83832925 Msa0579200:CDS 30.0%
!! TTGGTTTTCTTTTTGTCAAC+CGG + chr4_1:83833085-83833104 None:intergenic 30.0%
ACAACTTTGGTTGTTGTATT+AGG + chr4_1:83833587-83833606 None:intergenic 30.0%
ATGCACTCTTGTTGAAATTT+GGG + chr4_1:83833730-83833749 None:intergenic 30.0%
GAAGACAAAGACATTAATCT+TGG - chr4_1:83833755-83833774 Msa0579200:CDS 30.0%
TTATGATTACGACTTGCATT+TGG + chr4_1:83833809-83833828 None:intergenic 30.0%
CATAAAGATGTTATTGGAAG+TGG - chr4_1:83833824-83833843 Msa0579200:CDS 30.0%
TGTCAAGAAAAAGCAAATGT+TGG - chr4_1:83834160-83834179 Msa0579200:CDS 30.0%
TCCATCATTTAATTCAGGAA+GGG + chr4_1:83834188-83834207 None:intergenic 30.0%
ATCCATCATTTAATTCAGGA+AGG + chr4_1:83834189-83834208 None:intergenic 30.0%
TCTGATCCATCATTTAATTC+AGG + chr4_1:83834193-83834212 None:intergenic 30.0%
ACTGTTCATGCATTAATTGA+TGG - chr4_1:83834538-83834557 Msa0579200:CDS 30.0%
!! TTTTTGTTATCCACACATTC+TGG + chr4_1:83834757-83834776 None:intergenic 30.0%
TCTCAAGAAAAAGCAAATGT+TGG - chr4_1:83834898-83834917 Msa0579200:intron 30.0%
GGATAACAAAAATCACCAAA+AGG - chr4_1:83834957-83834976 Msa0579200:intron 30.0%
! ATCTTTTGGCATTTTGTCAT+TGG + chr4_1:83835202-83835221 None:intergenic 30.0%
AATAGTGTGTGATTAAGCGA+TGG + chr4_1:83830280-83830299 None:intergenic 35.0%
GTCAAACGTGAAGAACATTT+GGG - chr4_1:83830726-83830745 Msa0579200:CDS 35.0%
TCAAACGTGAAGAACATTTG+GGG - chr4_1:83830727-83830746 Msa0579200:CDS 35.0%
! AGAACATTTGGGGTATATGA+TGG - chr4_1:83830737-83830756 Msa0579200:CDS 35.0%
TTAGGTTTACCGTAACAATG+AGG - chr4_1:83830824-83830843 Msa0579200:CDS 35.0%
TAGGTTTACCGTAACAATGA+GGG - chr4_1:83830825-83830844 Msa0579200:CDS 35.0%
ATCATTGACCCTCATTGTTA+CGG + chr4_1:83830836-83830855 None:intergenic 35.0%
ATAAAGATTGCACCGAAAAC+CGG + chr4_1:83830889-83830908 None:intergenic 35.0%
GAGAAGAGAATGTTTCAAGA+AGG - chr4_1:83830924-83830943 Msa0579200:CDS 35.0%
TGTTTCAAGAAGGGATTGTT+TGG - chr4_1:83830934-83830953 Msa0579200:CDS 35.0%
GTTTCAAGAAGGGATTGTTT+GGG - chr4_1:83830935-83830954 Msa0579200:CDS 35.0%
ACGAATGGGATATAAGAAGA+CGG + chr4_1:83830964-83830983 None:intergenic 35.0%
GCATAATCTTCTCTACGAAT+GGG + chr4_1:83830978-83830997 None:intergenic 35.0%
! ACTACTTCATGGTGTTTTCA+AGG - chr4_1:83831035-83831054 Msa0579200:CDS 35.0%
!! TGTTTTCAAGGCTACTTCTA+AGG - chr4_1:83831047-83831066 Msa0579200:CDS 35.0%
!! GTTTTCAAGGCTACTTCTAA+GGG - chr4_1:83831048-83831067 Msa0579200:CDS 35.0%
TACCATTGATCTTCTGCTTT+AGG - chr4_1:83831226-83831245 Msa0579200:CDS 35.0%
AACCTAAAGCAGAAGATCAA+TGG + chr4_1:83831231-83831250 None:intergenic 35.0%
AGGTTAAGTTCACTGAGATT+TGG - chr4_1:83831246-83831265 Msa0579200:CDS 35.0%
!! CGAAATATCTTTTCAGGAAG+GGG + chr4_1:83831281-83831300 None:intergenic 35.0%
!! CTCGAAATATCTTTTCAGGA+AGG + chr4_1:83831283-83831302 None:intergenic 35.0%
! GCATCTCGAAATATCTTTTC+AGG + chr4_1:83831287-83831306 None:intergenic 35.0%
! GCAGCTAACAAGTTTAACTT+TGG - chr4_1:83831326-83831345 Msa0579200:CDS 35.0%
! AAGTTTAACTTTGGGCTATC+TGG - chr4_1:83831335-83831354 Msa0579200:CDS 35.0%
TGGTAATTATGCATCAAGAC+AGG + chr4_1:83831721-83831740 None:intergenic 35.0%
GTCTTGATGCATAATTACCA+AGG - chr4_1:83831721-83831740 Msa0579200:CDS 35.0%
GAATATTCTGCACGATACAA+TGG - chr4_1:83831745-83831764 Msa0579200:CDS 35.0%
TGCCATTAAAAGATGAAAGC+AGG - chr4_1:83831857-83831876 Msa0579200:CDS 35.0%
! AGCCTGCTTTCATCTTTTAA+TGG + chr4_1:83831862-83831881 None:intergenic 35.0%
!! TGGGTATGTTGGTGATTATT+TGG - chr4_1:83831948-83831967 Msa0579200:CDS 35.0%
CCATATAATCGTTGTTCTCA+AGG + chr4_1:83832002-83832021 None:intergenic 35.0%
CCTTGAGAACAACGATTATA+TGG - chr4_1:83831999-83832018 Msa0579200:CDS 35.0%
AACATCATCAGAAGGAATGT+CGG + chr4_1:83832061-83832080 None:intergenic 35.0%
TGAACTCTAACATCATCAGA+AGG + chr4_1:83832069-83832088 None:intergenic 35.0%
! TCTGATGATGTTAGAGTTCA+TGG - chr4_1:83832069-83832088 Msa0579200:CDS 35.0%
! TGGTCAGAGGATGATATTTT+CGG - chr4_1:83832146-83832165 Msa0579200:CDS 35.0%
ACATTGGAATCACGTAAACT+AGG + chr4_1:83832180-83832199 None:intergenic 35.0%
!! AGGAAGTGCTTAAATGGAAT+GGG + chr4_1:83832290-83832309 None:intergenic 35.0%
TGTATTGTATGGTAGCAACA+GGG - chr4_1:83832542-83832561 Msa0579200:CDS 35.0%
GTCAGAATCTGCTTTATATG+AGG - chr4_1:83832593-83832612 Msa0579200:CDS 35.0%
GCTAGTGTTATATCATGACT+CGG + chr4_1:83832777-83832796 None:intergenic 35.0%
! ATTAAGTTCTGATGTTCCTC+TGG - chr4_1:83832812-83832831 Msa0579200:CDS 35.0%
AAATTATCCCAATTTGCCAG+AGG + chr4_1:83832831-83832850 None:intergenic 35.0%
ATTGGATCATGGATACGATA+TGG - chr4_1:83832872-83832891 Msa0579200:CDS 35.0%
TTGGATCATGGATACGATAT+GGG - chr4_1:83832873-83832892 Msa0579200:CDS 35.0%
ATGCACGTGATGTTAACAAA+CGG - chr4_1:83832970-83832989 Msa0579200:CDS 35.0%
AAACAGAAACAATGCACAGA+AGG - chr4_1:83832995-83833014 Msa0579200:CDS 35.0%
CACTTCATCAACTGAAGTAA+TGG + chr4_1:83833033-83833052 None:intergenic 35.0%
!! TACTTCAGTTGATGAAGTGA+TGG - chr4_1:83833034-83833053 Msa0579200:CDS 35.0%
!! AGTTGATGAAGTGATGGAAA+TGG - chr4_1:83833040-83833059 Msa0579200:CDS 35.0%
GCAACAATACTGAAAGTTTG+AGG - chr4_1:83833117-83833136 Msa0579200:CDS 35.0%
!! TGATTGCTTTGAAAATGCCT+TGG - chr4_1:83833175-83833194 Msa0579200:CDS 35.0%
ACAACAAGGATGAAAGCTTA+AGG - chr4_1:83833201-83833220 Msa0579200:CDS 35.0%
! AGATCTCTTTGAAAATGCCT+TGG - chr4_1:83833259-83833278 Msa0579200:CDS 35.0%
ACAATGAGGATGAAAGTTTG+AGG - chr4_1:83833372-83833391 Msa0579200:CDS 35.0%
GATGAAAGTTTGAGGAAGAA+AGG - chr4_1:83833380-83833399 Msa0579200:CDS 35.0%
AACGAAGAAAAGAGATTGCT+CGG - chr4_1:83833421-83833440 Msa0579200:CDS 35.0%
CTTCTTCTTCTTCATACTAC+AGG + chr4_1:83833498-83833517 None:intergenic 35.0%
!! AGATTGCTTTGAAAATGCCT+TGG - chr4_1:83833520-83833539 Msa0579200:CDS 35.0%
TGCCTTGGATGATCTAAATA+CGG - chr4_1:83833535-83833554 Msa0579200:CDS 35.0%
ATCCGTATTTAGATCATCCA+AGG + chr4_1:83833540-83833559 None:intergenic 35.0%
ACGCTTGAAATCAACAACTT+TGG + chr4_1:83833600-83833619 None:intergenic 35.0%
! CTCACTCTTTTTACTCTCAT+TGG + chr4_1:83833666-83833685 None:intergenic 35.0%
!! AAGAGTGAGAATTTGTTGGT+TGG - chr4_1:83833677-83833696 Msa0579200:CDS 35.0%
!! AGAGTGAGAATTTGTTGGTT+GGG - chr4_1:83833678-83833697 Msa0579200:CDS 35.0%
GATGCACTCTTGTTGAAATT+TGG + chr4_1:83833731-83833750 None:intergenic 35.0%
GACAAAGACATTAATCTTGG+CGG - chr4_1:83833758-83833777 Msa0579200:CDS 35.0%
TATTGGAAGTGGATGTACAT+TGG - chr4_1:83833835-83833854 Msa0579200:CDS 35.0%
TCCACTGAAGATAAATTCTG+TGG + chr4_1:83833951-83833970 None:intergenic 35.0%
ACAGAATTTATCTTCAGTGG+AGG - chr4_1:83833950-83833969 Msa0579200:CDS 35.0%
CCCATCAAATAATGTAGGAA+GGG + chr4_1:83833996-83834015 None:intergenic 35.0%
CCCTTCCTACATTATTTGAT+GGG - chr4_1:83833993-83834012 Msa0579200:CDS 35.0%
ACCCATCAAATAATGTAGGA+AGG + chr4_1:83833997-83834016 None:intergenic 35.0%
TCTGACCCATCAAATAATGT+AGG + chr4_1:83834001-83834020 None:intergenic 35.0%
! AAGCTGAGAACAAAACCTTT+TGG + chr4_1:83834045-83834064 None:intergenic 35.0%
! TGACGAGAGTTTTCATAACA+AGG - chr4_1:83834072-83834091 Msa0579200:intron 35.0%
! GAGAGTTTTCATAACAAGGA+AGG - chr4_1:83834076-83834095 Msa0579200:intron 35.0%
ACCCTTCCTGAATTAAATGA+TGG - chr4_1:83834184-83834203 Msa0579200:CDS 35.0%
!! AAATGATGGATCAGAATGTG+CGG - chr4_1:83834198-83834217 Msa0579200:CDS 35.0%
! AAAAGCAGTATCTCTGAAGA+CGG - chr4_1:83834312-83834331 Msa0579200:intron 35.0%
ACCTTTCCTGCATTAAATGA+TGG - chr4_1:83834376-83834395 Msa0579200:CDS 35.0%
TCCATCATTTAATGCAGGAA+AGG + chr4_1:83834380-83834399 None:intergenic 35.0%
TCTGATCCATCATTTAATGC+AGG + chr4_1:83834385-83834404 None:intergenic 35.0%
!! AAATGATGGATCAGAATGTG+CGG - chr4_1:83834198-83834217 Msa0579200:CDS 35.0%
GGATAGCAAAAATGACCAAA+AGG - chr4_1:83834411-83834430 Msa0579200:CDS 35.0%
! AAGCTGAGAACAAAACCTTT+TGG + chr4_1:83834045-83834064 None:intergenic 35.0%
! AAAAGTAGCATCTCTGAAGA+TGG - chr4_1:83834474-83834493 Msa0579200:CDS 35.0%
! TCATGCATTAATTGATGGAC+CGG - chr4_1:83834543-83834562 Msa0579200:CDS 35.0%
! TTTTTGTCATCCACACATTC+CGG + chr4_1:83834565-83834584 None:intergenic 35.0%
GGATGACAAAAATCACCAAA+AGG - chr4_1:83834573-83834592 Msa0579200:CDS 35.0%
! AAGCTGAAGACAAAACCTTT+TGG + chr4_1:83834591-83834610 None:intergenic 35.0%
TCCATCATTTAATCCAGGAA+GGG + chr4_1:83834734-83834753 None:intergenic 35.0%
GGATAACAAAAACCACCAAA+AGG - chr4_1:83834765-83834784 Msa0579200:intron 35.0%
TCTTCATTCCAAGTAGTTGA+GGG + chr4_1:83834796-83834815 None:intergenic 35.0%
ACTCTTCATGCACTAAATGA+TGG - chr4_1:83834922-83834941 Msa0579200:intron 35.0%
!! AAATGATGGATCAGAATGTG+CGG - chr4_1:83834198-83834217 Msa0579200:CDS 35.0%
TATCATACATGAACCATCCT+TGG + chr4_1:83835022-83835041 None:intergenic 35.0%
GACAAAATGCCAAAAGATTG+TGG - chr4_1:83835204-83835223 Msa0579200:intron 35.0%
! ATCTTTAGCTTCAATGGAGA+AGG + chr4_1:83835232-83835251 None:intergenic 35.0%
TTCTCCATTGAAGCTAAAGA+TGG - chr4_1:83835231-83835250 Msa0579200:intron 35.0%
! AGAACCATCTTTAGCTTCAA+TGG + chr4_1:83835238-83835257 None:intergenic 35.0%
TCTGAATATTTAGGGAATGC+CGG - chr4_1:83835255-83835274 Msa0579200:five_prime_UTR 35.0%
!! AACTGGAGCATTTTCATTAC+CGG + chr4_1:83835277-83835296 None:intergenic 35.0%
ATGTGACAAGAAGTTTCAAC+TGG + chr4_1:83835294-83835313 None:intergenic 35.0%
TGAAACTTCTTGTCACATTG+AGG - chr4_1:83835296-83835315 Msa0579200:five_prime_UTR 35.0%
GAAAAAGAAGAAGAGAGCGA+AGG + chr4_1:83830256-83830275 None:intergenic 40.0%
GTAAAGCAGCATAATCGGAA+CGG + chr4_1:83830377-83830396 None:intergenic 40.0%
GGTCAAACGTGAAGAACATT+TGG - chr4_1:83830725-83830744 Msa0579200:CDS 40.0%
CGAATGGGATATAAGAAGAC+GGG + chr4_1:83830963-83830982 None:intergenic 40.0%
GGCATAATCTTCTCTACGAA+TGG + chr4_1:83830979-83830998 None:intergenic 40.0%
AGAGAAGATTATGCCCGATA+TGG - chr4_1:83830984-83831003 Msa0579200:CDS 40.0%
AGGTAGCAATATCGATCCTA+AGG - chr4_1:83831071-83831090 Msa0579200:CDS 40.0%
! CTAAGGCATTCACTTTGCTA+GGG - chr4_1:83831088-83831107 Msa0579200:CDS 40.0%
CGACATGAACAAGTTAGAAC+CGG - chr4_1:83831486-83831505 Msa0579200:CDS 40.0%
! GTTGGAAGATCTTTTGGTCA+TGG - chr4_1:83831574-83831593 Msa0579200:CDS 40.0%
ATCGTGCAGAATATTCTCCT+TGG + chr4_1:83831741-83831760 None:intergenic 40.0%
!! CTTGGAGTGGATTATACAAG+TGG - chr4_1:83831817-83831836 Msa0579200:CDS 40.0%
TCTCTCTGGATACTGCAAAT+GGG - chr4_1:83831929-83831948 Msa0579200:CDS 40.0%
GATACTGCAAATGGGTATGT+TGG - chr4_1:83831937-83831956 Msa0579200:CDS 40.0%
ATTATATGGGCACACATCTC+AGG - chr4_1:83832013-83832032 Msa0579200:CDS 40.0%
GATGTTAGAGTTCATGGTGA+TGG - chr4_1:83832075-83832094 Msa0579200:CDS 40.0%
GCAGGTCATCAATTAGTGAT+AGG - chr4_1:83832097-83832116 Msa0579200:CDS 40.0%
GGTGAAGACCTAAGAAATAG+TGG - chr4_1:83832126-83832145 Msa0579200:CDS 40.0%
ACCTAAGAAATAGTGGTCAG+AGG - chr4_1:83832133-83832152 Msa0579200:CDS 40.0%
! TCCTCTGACCACTATTTCTT+AGG + chr4_1:83832137-83832156 None:intergenic 40.0%
!! CAGGAAGTGCTTAAATGGAA+TGG + chr4_1:83832291-83832310 None:intergenic 40.0%
!! TTGCACAGGAAGTGCTTAAA+TGG + chr4_1:83832296-83832315 None:intergenic 40.0%
CTGTATTGTATGGTAGCAAC+AGG - chr4_1:83832541-83832560 Msa0579200:CDS 40.0%
AGGGAATGCATACAAAACTC+TGG - chr4_1:83832561-83832580 Msa0579200:CDS 40.0%
CCAATATCAGAAGAAGGGAT+AGG + chr4_1:83832657-83832676 None:intergenic 40.0%
CCTATCCCTTCTTCTGATAT+TGG - chr4_1:83832654-83832673 Msa0579200:CDS 40.0%
CTGATATTGGAAATAGTGGC+AGG - chr4_1:83832667-83832686 Msa0579200:CDS 40.0%
GGACTATAATGTTCATCCCA+TGG - chr4_1:83832737-83832756 Msa0579200:CDS 40.0%
GGATATTCTTGCAATGCCAT+GGG + chr4_1:83832756-83832775 None:intergenic 40.0%
TGATGTTCCTCTGGCAAATT+GGG - chr4_1:83832821-83832840 Msa0579200:CDS 40.0%
TGCACGTGATGTTAACAAAC+GGG - chr4_1:83832971-83832990 Msa0579200:CDS 40.0%
AATGCACAGAAGGAGGAATA+TGG - chr4_1:83833005-83833024 Msa0579200:CDS 40.0%
! AAGTGATGGAAATGGTTCGT+CGG - chr4_1:83833048-83833067 Msa0579200:CDS 40.0%
! GTTTTCTTTTTGTCAACCGG+TGG + chr4_1:83833082-83833101 None:intergenic 40.0%
!! TCAGTATTGTTGCGCTGATT+GGG + chr4_1:83833110-83833129 None:intergenic 40.0%
! TTCAGTATTGTTGCGCTGAT+TGG + chr4_1:83833111-83833130 None:intergenic 40.0%
AAATGCCTTGGAACACAACA+AGG - chr4_1:83833187-83833206 Msa0579200:CDS 40.0%
! TTCATCCTTGTTGTGTTCCA+AGG + chr4_1:83833195-83833214 None:intergenic 40.0%
ACAACGAGGATGAAAGTTTG+AGG - chr4_1:83833285-83833304 Msa0579200:CDS 40.0%
!! AGATTGCTCTGAAAATGCCT+TGG - chr4_1:83833346-83833365 Msa0579200:CDS 40.0%
!! GATTGCTCTGAAAATGCCTT+GGG - chr4_1:83833347-83833366 Msa0579200:CDS 40.0%
ACAACGAGGATGAAAGTTTG+AGG - chr4_1:83833285-83833304 Msa0579200:CDS 40.0%
TTACGACTTGCATTTGGCAA+TGG + chr4_1:83833803-83833822 None:intergenic 40.0%
GCCACAGAATTTATCTTCAG+TGG - chr4_1:83833947-83833966 Msa0579200:CDS 40.0%
GCCCTTCCTACATTATTTGA+TGG - chr4_1:83833992-83834011 Msa0579200:CDS 40.0%
! ATTTGATGGGTCAGAATGTG+CGG - chr4_1:83834006-83834025 Msa0579200:CDS 40.0%
CAAGGAAGGTTCATGTATGA+TGG - chr4_1:83834090-83834109 Msa0579200:intron 40.0%
TAATGTAGAAGCAGCATCTC+TGG - chr4_1:83834114-83834133 Msa0579200:intron 40.0%
! TCACCAGAAGTTTTTGTCCT+CGG - chr4_1:83834231-83834250 Msa0579200:intron 40.0%
TGTCAACAAAAAGCAAACGC+TGG - chr4_1:83834352-83834371 Msa0579200:intron 40.0%
TGAAGAGAGTTCTTGTACCA+AGG - chr4_1:83834618-83834637 Msa0579200:CDS 40.0%
TACCAAGGAAGGTTCATGTA+TGG - chr4_1:83834633-83834652 Msa0579200:exon 40.0%
ACCCTTCCTGGATTAAATGA+TGG - chr4_1:83834730-83834749 Msa0579200:five_prime_UTR 40.0%
GTCCATCATTTAATCCAGGA+AGG + chr4_1:83834735-83834754 None:intergenic 40.0%
TCTGGTCCATCATTTAATCC+AGG + chr4_1:83834739-83834758 None:intergenic 40.0%
!! AAATGATGGACCAGAATGTG+TGG - chr4_1:83834744-83834763 Msa0579200:five_prime_UTR 40.0%
CTCTTCATTCCAAGTAGTTG+AGG + chr4_1:83834797-83834816 None:intergenic 40.0%
TGAAGAGAGTTCTCATACCA+AGG - chr4_1:83834810-83834829 Msa0579200:intron 40.0%
! AAGCTGAGGACAAAACCTTT+TGG + chr4_1:83834975-83834994 None:intergenic 40.0%
CAAGGAAGGTTCATGTATGA+TGG - chr4_1:83834090-83834109 Msa0579200:intron 40.0%
!!! AGGTTTTAGGTTTGGTGAGC+GGG + chr4_1:83830207-83830226 None:intergenic 45.0%
!!! GAGGTTTTAGGTTTGGTGAG+CGG + chr4_1:83830208-83830227 None:intergenic 45.0%
!!! AGAGGAGGAGGTTTTAGGTT+TGG + chr4_1:83830215-83830234 None:intergenic 45.0%
TTGTTCCGATCATTCTCTGC+TGG - chr4_1:83830454-83830473 Msa0579200:CDS 45.0%
CTACACCAGCAGAGAATGAT+CGG + chr4_1:83830462-83830481 None:intergenic 45.0%
AACCACAACAACAATGCTCG+CGG - chr4_1:83830856-83830875 Msa0579200:CDS 45.0%
! TTCAAGGCTACTTCTAAGGG+AGG - chr4_1:83831051-83831070 Msa0579200:CDS 45.0%
CCTAGCAAAGTGAATGCCTT+AGG + chr4_1:83831090-83831109 None:intergenic 45.0%
! CCTAAGGCATTCACTTTGCT+AGG - chr4_1:83831087-83831106 Msa0579200:CDS 45.0%
AGGGATACAATATCCTGCTC+AGG - chr4_1:83831107-83831126 Msa0579200:CDS 45.0%
GGTATGCGCTTGTACATGAT+TGG - chr4_1:83831364-83831383 Msa0579200:CDS 45.0%
CATGAACAAGTTAGAACCGG+AGG - chr4_1:83831489-83831508 Msa0579200:CDS 45.0%
ACATCAGAGCAGTACTCAGT+TGG - chr4_1:83831547-83831566 Msa0579200:CDS 45.0%
! GGCGAAGTTGGAAGATCTTT+TGG - chr4_1:83831568-83831587 Msa0579200:CDS 45.0%
GGTCATGGAATGCTTGATGA+AGG - chr4_1:83831589-83831608 Msa0579200:CDS 45.0%
! GCTGGAAGATCTTTTGGTCA+TGG - chr4_1:83831643-83831662 Msa0579200:CDS 45.0%
CAAAGAAGGTCTTCTGAGCT+TGG - chr4_1:83831799-83831818 Msa0579200:CDS 45.0%
TGCAGTATCCAGAGAGAGTT+TGG + chr4_1:83831926-83831945 None:intergenic 45.0%
CTCTCTCTGGATACTGCAAA+TGG - chr4_1:83831928-83831947 Msa0579200:CDS 45.0%
TGGCAAGAAAAGATGACAGC+AGG - chr4_1:83831968-83831987 Msa0579200:CDS 45.0%
!! TTAGAGTTCATGGTGATGGC+AGG - chr4_1:83832079-83832098 Msa0579200:CDS 45.0%
ATCTGCCTGTCTTCTACAAC+AGG - chr4_1:83832202-83832221 Msa0579200:CDS 45.0%
TTAGGCCTGTTGTAGAAGAC+AGG + chr4_1:83832210-83832229 None:intergenic 45.0%
CTGTATGATTCAGATGCTCC+TGG - chr4_1:83832339-83832358 Msa0579200:CDS 45.0%
ATGCTCCTGGCTTAAACTTC+AGG - chr4_1:83832352-83832371 Msa0579200:CDS 45.0%
! TTCAGGCAGCTACCATCTTT+TGG - chr4_1:83832369-83832388 Msa0579200:CDS 45.0%
CTTTCTCCATCAACCAACTG+CGG - chr4_1:83832426-83832445 Msa0579200:CDS 45.0%
CGGAAGGAATTCAACGAGTA+GGG - chr4_1:83832446-83832465 Msa0579200:CDS 45.0%
AGTTCTGTATGCACGAGTTG+TGG + chr4_1:83832474-83832493 None:intergenic 45.0%
CATACAAAACTCTGGCCAGT+TGG - chr4_1:83832569-83832588 Msa0579200:CDS 45.0%
AGGAGCTGACGAAGACTTTA+AGG + chr4_1:83832637-83832656 None:intergenic 45.0%
CGGATATTCTTGCAATGCCA+TGG + chr4_1:83832757-83832776 None:intergenic 45.0%
CTGATGTTCCTCTGGCAAAT+TGG - chr4_1:83832820-83832839 Msa0579200:CDS 45.0%
GGATACGATATGGGATGTCA+TGG - chr4_1:83832882-83832901 Msa0579200:CDS 45.0%
CAGAAACAATGCACAGAAGG+AGG - chr4_1:83832998-83833017 Msa0579200:CDS 45.0%
AAACTCAAGTCACCAGTCAG+AGG - chr4_1:83833228-83833247 Msa0579200:CDS 45.0%
ATCTCTCTTCTTCCTCTGAC+TGG + chr4_1:83833243-83833262 None:intergenic 45.0%
AAATGCCTTGGAACACAACG+AGG - chr4_1:83833271-83833290 Msa0579200:CDS 45.0%
TTCATCCTCGTTGTGTTCCA+AGG + chr4_1:83833279-83833298 None:intergenic 45.0%
AAATGCCTTGGGACACAATG+AGG - chr4_1:83833358-83833377 Msa0579200:CDS 45.0%
TTCATCCTCATTGTGTCCCA+AGG + chr4_1:83833366-83833385 None:intergenic 45.0%
AGATTGCTCGGAGAATGTCT+TGG - chr4_1:83833433-83833452 Msa0579200:CDS 45.0%
GAATGTCTTGGAACACAACG+AGG - chr4_1:83833445-83833464 Msa0579200:CDS 45.0%
!! TGATTTCAAGCGTCGAAGCA+AGG - chr4_1:83833607-83833626 Msa0579200:CDS 45.0%
ATCTTCAGTGGAGGAGAGAA+AGG - chr4_1:83833959-83833978 Msa0579200:CDS 45.0%
TCTTCAGTGGAGGAGAGAAA+GGG - chr4_1:83833960-83833979 Msa0579200:CDS 45.0%
GAGGACAAAAACTTCTGGTG+AGG + chr4_1:83834232-83834251 None:intergenic 45.0%
AAGCCGAGGACAAAAACTTC+TGG + chr4_1:83834237-83834256 None:intergenic 45.0%
TGAAGAGAGTTCTCATACCG+AGG - chr4_1:83834264-83834283 Msa0579200:intron 45.0%
GAAGAGAGTTCTCATACCGA+GGG - chr4_1:83834265-83834284 Msa0579200:intron 45.0%
TACCGAGGGAAGTTCATGTA+TGG - chr4_1:83834279-83834298 Msa0579200:intron 45.0%
CACCATACATGAACTTCCCT+CGG + chr4_1:83834284-83834303 None:intergenic 45.0%
! AATTGATGGACCGGAATGTG+TGG - chr4_1:83834552-83834571 Msa0579200:CDS 45.0%
GAGAGTTCTTGTACCAAGGA+AGG - chr4_1:83834622-83834641 Msa0579200:CDS 45.0%
CACCATACATGAACCTTCCT+TGG + chr4_1:83834638-83834657 None:intergenic 45.0%
CAAGGAAGGTTCATGTATGG+TGG - chr4_1:83834636-83834655 Msa0579200:exon 45.0%
! TAGTTGAGGGCAAAGCCTTT+TGG + chr4_1:83834783-83834802 None:intergenic 45.0%
GAGAGTTCTCATACCAAGGA+AGG - chr4_1:83834814-83834833 Msa0579200:intron 45.0%
CTCATACCAAGGAAGGTTCA+CGG - chr4_1:83834821-83834840 Msa0579200:intron 45.0%
TCATACCAAGGAAGGTTCAC+GGG - chr4_1:83834822-83834841 Msa0579200:intron 45.0%
GTCTTCATTGCAAGAAGCTG+AGG + chr4_1:83834443-83834462 None:intergenic 45.0%
TGAAGACAGCTCTCATACCA+AGG - chr4_1:83835002-83835021 Msa0579200:intron 45.0%
! GAGAAGGAGCCACAATCTTT+TGG + chr4_1:83835216-83835235 None:intergenic 45.0%
!! TATGTATATAAAAAAATAAA+AGG + chr4_1:83830329-83830348 None:intergenic 5.0%
AAGGGAAGGGAGAGAAGAGA+CGG + chr4_1:83830184-83830203 None:intergenic 50.0%
!! TTAGGTTTGGTGAGCGGGAA+GGG + chr4_1:83830202-83830221 None:intergenic 50.0%
!! TTTAGGTTTGGTGAGCGGGA+AGG + chr4_1:83830203-83830222 None:intergenic 50.0%
! GGAAGAGAGGAGGAGGTTTT+AGG + chr4_1:83830220-83830239 None:intergenic 50.0%
AACCTCCTCCTCTCTTCCAT+AGG - chr4_1:83830222-83830241 Msa0579200:CDS 50.0%
TACACGCACCTATGGAAGAG+AGG + chr4_1:83830233-83830252 None:intergenic 50.0%
! TTCCGCGAGCATTGTTGTTG+TGG + chr4_1:83830861-83830880 None:intergenic 50.0%
CAATGCTCGCGGAAAAGATC+CGG - chr4_1:83830867-83830886 Msa0579200:CDS 50.0%
! CGCGGAAAAGATCCGGTTTT+CGG - chr4_1:83830874-83830893 Msa0579200:CDS 50.0%
CTTTGGGCTATCTGGAGATC+AGG - chr4_1:83831343-83831362 Msa0579200:CDS 50.0%
AGTTAGAACCGGAGGTTCCT+AGG - chr4_1:83831497-83831516 Msa0579200:CDS 50.0%
ATACGTCTCCTAGGAACCTC+CGG + chr4_1:83831508-83831527 None:intergenic 50.0%
! GCTCTAGACATACGTCTCCT+AGG + chr4_1:83831517-83831536 None:intergenic 50.0%
CAGTACTCAGTTGGCGAAGT+TGG - chr4_1:83831556-83831575 Msa0579200:CDS 50.0%
! CCTACTGAGTACGGCTCTAA+TGG + chr4_1:83831619-83831638 None:intergenic 50.0%
CCATTAGAGCCGTACTCAGT+AGG - chr4_1:83831616-83831635 Msa0579200:CDS 50.0%
! GGCGAAGCTGGAAGATCTTT+TGG - chr4_1:83831637-83831656 Msa0579200:CDS 50.0%
AAGGTCTTCTGAGCTTGGAG+TGG - chr4_1:83831804-83831823 Msa0579200:CDS 50.0%
CTATGCTGCCAAACTCTCTC+TGG - chr4_1:83831915-83831934 Msa0579200:CDS 50.0%
CATCTCAGGCCATACAGTGT+AGG - chr4_1:83832027-83832046 Msa0579200:CDS 50.0%
GCGTATCCACCTACACTGTA+TGG + chr4_1:83832039-83832058 None:intergenic 50.0%
GAAGACAGGCAGATCGACAT+TGG + chr4_1:83832196-83832215 None:intergenic 50.0%
AGCACTTCCTGTGCAACACA+AGG - chr4_1:83832300-83832319 Msa0579200:CDS 50.0%
TTCAGCTCCTTGTGTTGCAC+AGG + chr4_1:83832310-83832329 None:intergenic 50.0%
AGCTGCCTGAAGTTTAAGCC+AGG + chr4_1:83832360-83832379 None:intergenic 50.0%
TTCCTTCCGCAGTTGGTTGA+TGG + chr4_1:83832435-83832454 None:intergenic 50.0%
CGTTGAATTCCTTCCGCAGT+TGG + chr4_1:83832442-83832461 None:intergenic 50.0%
GCGGAAGGAATTCAACGAGT+AGG - chr4_1:83832445-83832464 Msa0579200:CDS 50.0%
AAGCAGATTCTGACGCCAAC+TGG + chr4_1:83832587-83832606 None:intergenic 50.0%
!! TTGTTGCGCTGATTGGGTGT+TGG + chr4_1:83833104-83833123 None:intergenic 50.0%
ACGGATTCCACAACTGTGAC+TGG - chr4_1:83833554-83833573 Msa0579200:CDS 50.0%
GATTCCACAACTGTGACTGG+AGG - chr4_1:83833557-83833576 Msa0579200:CDS 50.0%
ATTGCCTCCAGTCACAGTTG+TGG + chr4_1:83833564-83833583 None:intergenic 50.0%
! AGAAGCAGCATCTCTGGAGA+AGG - chr4_1:83834120-83834139 Msa0579200:intron 50.0%
CTCTTCATTGCAAGAAGCCG+AGG + chr4_1:83834251-83834270 None:intergenic 50.0%
CGAGGGAAGTTCATGTATGG+TGG - chr4_1:83834282-83834301 Msa0579200:intron 50.0%
! TTGAGGGCAAAGCCTTTTGG+TGG + chr4_1:83834780-83834799 None:intergenic 50.0%
AGGCTTTGCCCTCAACTACT+TGG - chr4_1:83834785-83834804 Msa0579200:intron 50.0%
GACAGCTCTCATACCAAGGA+TGG - chr4_1:83835006-83835025 Msa0579200:intron 50.0%
! CAAGCCTTATCCCACCAAGT+GGG - chr4_1:83835049-83835068 Msa0579200:intron 50.0%
! AAGCCTTATCCCACCAAGTG+GGG - chr4_1:83835050-83835069 Msa0579200:intron 50.0%
! AGGGAGAGAAGAGACGGGTT+CGG + chr4_1:83830178-83830197 None:intergenic 55.0%
AGGGAAGGGAGAGAAGAGAC+GGG + chr4_1:83830183-83830202 None:intergenic 55.0%
TTTGGTGAGCGGGAAGGGAA+GGG + chr4_1:83830197-83830216 None:intergenic 55.0%
CACCTATGGAAGAGAGGAGG+AGG + chr4_1:83830227-83830246 None:intergenic 55.0%
ACGCACCTATGGAAGAGAGG+AGG + chr4_1:83830230-83830249 None:intergenic 55.0%
! AGCGAAGGTACACGCACCTA+TGG + chr4_1:83830241-83830260 None:intergenic 55.0%
GCATAATCGGAACGGCGCAA+CGG + chr4_1:83830369-83830388 None:intergenic 55.0%
TGGGTTCTTCTCACCTGAGC+AGG + chr4_1:83831123-83831142 None:intergenic 55.0%
CCAGCTTCGCCTACTGAGTA+CGG + chr4_1:83831628-83831647 None:intergenic 55.0%
CTCAGGCCATACAGTGTAGG+TGG - chr4_1:83832030-83832049 Msa0579200:CDS 55.0%
CTCCATCAACCAACTGCGGA+AGG - chr4_1:83832430-83832449 Msa0579200:CDS 55.0%
TTCGTCGGAGTCAAAGCCAC+CGG - chr4_1:83833063-83833082 Msa0579200:CDS 55.0%
!! TCAAGCGTCGAAGCAAGGTG+AGG - chr4_1:83833612-83833631 Msa0579200:CDS 55.0%
GCAATTGCTGACACCCTTCC+TGG - chr4_1:83834718-83834737 Msa0579200:five_prime_UTR 55.0%
CATCACCCGTGAACCTTCCT+TGG + chr4_1:83834830-83834849 None:intergenic 55.0%
CAAGGAAGGTTCACGGGTGA+TGG - chr4_1:83834828-83834847 Msa0579200:intron 55.0%
! CCACTTGGTGGGATAAGGCT+TGG + chr4_1:83835051-83835070 None:intergenic 55.0%
! CCAAGCCTTATCCCACCAAG+TGG - chr4_1:83835048-83835067 Msa0579200:intron 55.0%
CTTATCCCACCAAGTGGGGT+CGG - chr4_1:83835054-83835073 Msa0579200:intron 55.0%
! GAGAGAAGAGACGGGTTCGG+TGG + chr4_1:83830175-83830194 None:intergenic 60.0%
! GTTTGGTGAGCGGGAAGGGA+AGG + chr4_1:83830198-83830217 None:intergenic 60.0%
CCGTACTCAGTAGGCGAAGC+TGG - chr4_1:83831625-83831644 Msa0579200:CDS 60.0%
! CGACCCCACTTGGTGGGATA+AGG + chr4_1:83835056-83835075 None:intergenic 60.0%
!! GGGTTCGGTGGCAGCGCAAT+AGG + chr4_1:83830163-83830182 None:intergenic 65.0%
CCTTGCCGACCCCACTTGGT+GGG + chr4_1:83835062-83835081 None:intergenic 65.0%
TCCTTGCCGACCCCACTTGG+TGG + chr4_1:83835063-83835082 None:intergenic 65.0%
CCTTCCTTGCCGACCCCACT+TGG + chr4_1:83835066-83835085 None:intergenic 65.0%
CCAAGTGGGGTCGGCAAGGA+AGG - chr4_1:83835063-83835082 Msa0579200:intron 65.0%
CCCACCAAGTGGGGTCGGCA+AGG - chr4_1:83835059-83835078 Msa0579200:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83830160 83835329 83830160 ID=Msa0579200;Name=Msa0579200
chr4_1 mRNA 83830160 83835329 83830160 ID=Msa0579200-mRNA-1;Parent=Msa0579200;Name=Msa0579200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=199|1|0.75|1|0.66|0.5|4|0|1423
chr4_1 exon 83830160 83834026 83830160 ID=Msa0579200-mRNA-1:exon:30648;Parent=Msa0579200-mRNA-1
chr4_1 exon 83834125 83834241 83834125 ID=Msa0579200-mRNA-1:exon:30647;Parent=Msa0579200-mRNA-1
chr4_1 exon 83834361 83834763 83834361 ID=Msa0579200-mRNA-1:exon:30646;Parent=Msa0579200-mRNA-1
chr4_1 exon 83835246 83835329 83835246 ID=Msa0579200-mRNA-1:exon:30645;Parent=Msa0579200-mRNA-1
chr4_1 five_prime_UTR 83835246 83835329 83835246 ID=Msa0579200-mRNA-1:five_prime_utr;Parent=Msa0579200-mRNA-1
chr4_1 five_prime_UTR 83834649 83834763 83834649 ID=Msa0579200-mRNA-1:five_prime_utr;Parent=Msa0579200-mRNA-1
chr4_1 CDS 83834361 83834648 83834361 ID=Msa0579200-mRNA-1:cds;Parent=Msa0579200-mRNA-1
chr4_1 CDS 83834125 83834241 83834125 ID=Msa0579200-mRNA-1:cds;Parent=Msa0579200-mRNA-1
chr4_1 CDS 83830160 83834026 83830160 ID=Msa0579200-mRNA-1:cds;Parent=Msa0579200-mRNA-1
Gene Sequence

>Msa0579200

ATGAGGGTCAATGATAACCACAACAACAATGCTCGCGGAAAAGATCCGGTTTTCGGTGCAATCTTTATTGCAAACAGTGAATCGAGAAGAGAATGTTTCAAGAAGGGATTGTTTGGGCTCCCGTCTTCTTATATCCCATTCGTAGAGAAGATTATGCCCGATATGGCTTTGTTTTTATTTGATTATGAGAAGAAACTACTTCATGGTGTTTTCAAGGCTACTTCTAAGGGAGGTAGCAATATCGATCCTAAGGCATTCACTTTGCTAGGGATACAATATCCTGCTCAGGTTAAGTTCACTGAGATTTGGAAATGTAAGCCCCTTCCTGAAAAGATATTTCGAGATGCAATCAGAGAGAATTACTTTGCAGCTAACAAGTTTAACTTTGGGCTATCTGGAGATCAGGTCAATAAACTTCTACATTTGTTCGACATGAACAAGTTAGAACCGGAGGTTCCTAGGAGACGTATGTCTAGAGCAGATGATATGACATCAGAGCAGTACTCAGTTGGCGAAGTTGGAAGATCTTTTGGTCATGGAATGCTTGATGAAGGTGTTCCATTAGAGCCGTACTCAGTAGGCGAAGCTGGAAGATCTTTTGGTCATGGAATGCTTGATGAAAATGTTCAAAATGACAGAGTTTTGGGTGATAAAAGTTCACCTGTCTTGATGCATAATTACCAAGGAGAATATTCTGCACGATACAATGGATTCAGTGCAGATGATATTTTAGTAAGCAAACAAAGAAGGTCTTCTGAGCTTGGAGTGGATTATACAAGTGGATATGTTGGTGATTATTTGCCATTAAAAGATGAAAGCAGGCTTGCTGCACGCAACAATGCAGATTATTTAGATAACTATGCTGCCAAACTCTCTCTGGATACTGCAAATGGGTATGTTGGTGATTATTTGGCAAGAAAAGATGACAGCAGGTTTACGTCCCTTGAGAACAACGATTATATGGGCACACATCTCAGGCCATACAGTGTAGGTGGATACGCCGACATTCCTTCTGATGATGTTAGAGTTCATGGTGATGGCAGGTCATCAATTAGTGATAGGTTGATGGGTGAAGACCTAAGAAATAGTGGTCAGAGGATGATATTTTCGGATGATACTCCTAGTTTACGTGATTCCAATGTCGATCTGCCTGTCTTCTACAACAGGCCTAATTTAGAGCAAAGTTCTTTGGTTGAAAATCATTGCAGTTCAACTTCTGCTATGATTCACCCATTCCATTTAAGCACTTCCTGTGCAACACAAGGAGCTGAAAGTTCTATTCTGTATGATTCAGATGCTCCTGGCTTAAACTTCAGGCAGCTACCATCTTTTGGAATTAATAATGGTTCTGAGTCAATAACAGAAAGACTTTCTCCATCAACCAACTGCGGAAGGAATTCAACGAGTAGGGAACCACAACTCGTGCATACAGAACTCAAAGACAAATACAGATGGCACAATATTGGTGATTGTTTTCCAAATTCTGTATTGTATGGTAGCAACAGGGAATGCATACAAAACTCTGGCCAGTTGGCGTCAGAATCTGCTTTATATGAGGCTCGCAGTAACATTTTTTCCTTAAAGTCTTCGTCAGCTCCTATCCCTTCTTCTGATATTGGAAATAGTGGCAGGACACATGAGCCATTTTCTTCACTGTTTGATAATCACAAATCATATTTGGACTATAATGTTCATCCCATGGCATTGCAAGAATATCCGAGTCATGATATAACACTAGCAATGAACAATGGAACATTAAGTTCTGATGTTCCTCTGGCAAATTGGGATAATTTTCAAGTCCAATATGATGATTCATTGGATCATGGATACGATATGGGATGTCATGGTGATTCTCAAAATAGCAATCATGGCCATCCAAATAAAAAAAGTAGTGTGTTTTCTCGTATATCTTATGCACGTGATGTTAACAAACGGGAAAACAGAAACAATGCACAGAAGGAGGAATATGGTTCCATTACTTCAGTTGATGAAGTGATGGAAATGGTTCGTCGGAGTCAAAGCCACCGGTTGACAAAAAGAAAACCAACACCCAATCAGCGCAACAATACTGAAAGTTTGAGGAATAAAACTCAACTCAGTAGTCAGAGCAAGAAGAATGATTGCTTTGAAAATGCCTTGGAACACAACAAGGATGAAAGCTTAAGGAATAAAACTCAAGTCACCAGTCAGAGGAAGAAGAGAGATCTCTTTGAAAATGCCTTGGAACACAACGAGGATGAAAGTTTGAGGAGTAAAACTCAAATCAGTAGTTTGAAAAAGGAGAAAAGAGATTGCTCTGAAAATGCCTTGGGACACAATGAGGATGAAAGTTTGAGGAAGAAAGGTCGAATCATTAGTCTGAAAACGAAGAAAAGAGATTGCTCGGAGAATGTCTTGGAACACAACGAGGATGAAAGTTTGAGGTATAAAACGCAAACCTGTAGTATGAAGAAGAAGAAGAGAGATTGCTTTGAAAATGCCTTGGATGATCTAAATACGGATTCCACAACTGTGACTGGAGGCAATCCTAATACAACAACCAAAGTTGTTGATTTCAAGCGTCGAAGCAAGGTGAGGAAACATAGTGATGAGATTGAGAGAAGCTCCAATGAGAGTAAAAAGAGTGAGAATTTGTTGGTTGGGCAGCAAAAGAGAAGAAAGTTGATTCGCCCAAATTTCAACAAGAGTGCATCTTGTGAAGACAAAGACATTAATCTTGGCGGTTCTCAAAATTTACAACTACCATTGCCAAATGCAAGTCGTAATCATAAAGATGTTATTGGAAGTGGATGTACATTGGTGAACCAGTGTGATTATGATGTTAAAACAGATGCTGAAGTTCAAAACATCAATTATCAAACACAATCTGAAGTTAAGAATAGTAGTCACGCCACAGAATTTATCTTCAGTGGAGGAGAGAAAGGGAACGTTGTCGCCCTTCCTACATTATTTGATGGGTCAGAATGTGCGGATAATAAAAATCACCAAAAGGTTTTGTTCTCAGCTTCTTGCAGTGACGAGAGTTTTCATAACAAGGAAGGTTCATGTATGATGGATAATGTAGAAGCAGCATCTCTGGAGAAGGAATCGTTGCGTGCAATTTGTCAAGAAAAAGCAAATGTTGGCACCCTTCCTGAATTAAATGATGGATCAGAATGTGCGGATAACAAACCTCACCAGAAGTTTTTGTCCTCGGCTTCTTGCAATGAAGAGAGTTCTCATACCGAGGGAAGTTCATGTATGGTGGATAATGTAAAAGCAGTATCTCTGAAGACGGAATCATTGCATGCACTTTGTCAACAAAAAGCAAACGCTGGCACCTTTCCTGCATTAAATGATGGATCAGAATGTGCGGATAGCAAAAATGACCAAAAGGTTTTGTTCTCAGCTTCTTGCAATGAAGACAGTTGTCTAGAAAAAGTAGCATCTCTGAAGATGGAATCATTGCATACAATTTGTCTAGAAAAAGTGAATGTTAGCACTGTTCATGCATTAATTGATGGACCGGAATGTGTGGATGACAAAAATCACCAAAAGGTTTTGTCTTCAGCTTCTTGCAATGAAGAGAGTTCTTGTACCAAGGAAGGTTCATGTATGGTGGATAATGTAAAAGAAGCATCTCTGAAGATTGAATCATTGCATGCAGTTTGTCAAGAAAAAGCAATTGCTGACACCCTTCCTGGATTAAATGATGGACCAGAATGTGTGGATAACAAAAACCACCAAAAGGCTTTGCCCTCAACTACTTGGAATGAAGAGAGTTCTCATACCAAGGAAGGTTCACGGGTGATGGTTAATGTGAAAGAAGCATCTCTGAAGACAGAATCATTGCATGCAGTTTCTCAAGAAAAAGCAAATGTTGGCACTCTTCATGCACTAAATGATGGATCAGAATGTGCGGATAACAAAAATCACCAAAAGGTTTTGTCCTCAGCTTCTTGCAATGAAGACAGCTCTCATACCAAGGATGGTTCATGTATGATACAACAACCAAGCCTTATCCCACCAAGTGGGGTCGGCAAGGAAGGTTCATGTATGATGGATAATGTAAAATCAGCATCTTTGGAGACAGAATCATTGAATGCAATTTGTCAAGAAAATAATGCAGATAAGATCATATGTGCTGACAGATGTATTAATGCCAATGACAAAATGCCAAAAGATTGTGGCTCCTTCTCCATTGAAGCTAAAGATGGTTCTGAATATTTAGGGAATGCCGGTAATGAAAATGCTCCAGTTGAAACTTCTTGTCACATTGAGGCTTGCATGTAG
Protein sequence

>Msa0579200

MRVNDNHNNNARGKDPVFGAIFIANSESRRECFKKGLFGLPSSYIPFVEKIMPDMALFLFDYEKKLLHGVFKATSKGGSNIDPKAFTLLGIQYPAQVKFTEIWKCKPLPEKIFRDAIRENYFAANKFNFGLSGDQVNKLLHLFDMNKLEPEVPRRRMSRADDMTSEQYSVGEVGRSFGHGMLDEGVPLEPYSVGEAGRSFGHGMLDENVQNDRVLGDKSSPVLMHNYQGEYSARYNGFSADDILVSKQRRSSELGVDYTSGYVGDYLPLKDESRLAARNNADYLDNYAAKLSLDTANGYVGDYLARKDDSRFTSLENNDYMGTHLRPYSVGGYADIPSDDVRVHGDGRSSISDRLMGEDLRNSGQRMIFSDDTPSLRDSNVDLPVFYNRPNLEQSSLVENHCSSTSAMIHPFHLSTSCATQGAESSILYDSDAPGLNFRQLPSFGINNGSESITERLSPSTNCGRNSTSREPQLVHTELKDKYRWHNIGDCFPNSVLYGSNRECIQNSGQLASESALYEARSNIFSLKSSSAPIPSSDIGNSGRTHEPFSSLFDNHKSYLDYNVHPMALQEYPSHDITLAMNNGTLSSDVPLANWDNFQVQYDDSLDHGYDMGCHGDSQNSNHGHPNKKSSVFSRISYARDVNKRENRNNAQKEEYGSITSVDEVMEMVRRSQSHRLTKRKPTPNQRNNTESLRNKTQLSSQSKKNDCFENALEHNKDESLRNKTQVTSQRKKRDLFENALEHNEDESLRSKTQISSLKKEKRDCSENALGHNEDESLRKKGRIISLKTKKRDCSENVLEHNEDESLRYKTQTCSMKKKKRDCFENALDDLNTDSTTVTGGNPNTTTKVVDFKRRSKVRKHSDEIERSSNESKKSENLLVGQQKRRKLIRPNFNKSASCEDKDINLGGSQNLQLPLPNASRNHKDVIGSGCTLVNQCDYDVKTDAEVQNINYQTQSEVKNSSHATEFIFSGGEKGNVVALPTLFDGSECADNKNHQKVLFSASCSDESFHNKEGSCMMDNVEAASLEKESLRAICQEKANVGTLPELNDGSECADNKPHQKFLSSASCNEESSHTEGSSCMVDNVKAVSLKTESLHALCQQKANAGTFPALNDGSECADSKNDQKVLFSASCNEDSCLEKVASLKMESLHTICLEKVNVSTVHALIDGPECVDDKNHQKVLSSASCNEESSCTKEGSCMVDNVKEASLKIESLHAVCQEKAIADTLPGLNDGPECVDNKNHQKALPSTTWNEESSHTKEGSRVMVNVKEASLKTESLHAVSQEKANVGTLHALNDGSECADNKNHQKVLSSASCNEDSSHTKDGSCMIQQPSLIPPSGVGKEGSCMMDNVKSASLETESLNAICQENNADKIICADRCINANDKMPKDCGSFSIEAKDGSEYLGNAGNENAPVETSCHIEACM*