AlfalfaGEDB | Msa1111180

M. sativa cultivar zhongmu-4 / Msa1111180

KEGG: K13254
GO: GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047
PFAM: PF00004.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111180	XP_003623772.1	94.779	498	5	6	1	489	1	486	0.0	938

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111180	sp\|Q5ZK92\|SPAST_CHICK	51.549	355	150	5	145	487	265	609	8.97e-110	341

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111180	G7L0E6	94.779	498	5	6	1	489	1	486	0.0	938

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004880	Msa1111180	0.821010	5.068298e-53	-8.615850e-47
Msa0004920	Msa1111180	0.805734	1.157132e-49	-8.615850e-47
Msa0006390	Msa1111180	0.812516	4.076374e-51	-8.615850e-47
Msa0008410	Msa1111180	0.807129	5.876391e-50	-8.615850e-47
Msa0014710	Msa1111180	0.822321	2.521509e-53	-8.615850e-47
Msa0014800	Msa1111180	0.811969	5.365205e-51	-8.615850e-47
Msa0015390	Msa1111180	0.815294	9.950235e-52	-8.615850e-47
Msa0017510	Msa1111180	0.826918	2.083850e-54	-8.615850e-47
Msa0020410	Msa1111180	0.807716	4.411960e-50	-8.615850e-47
Msa0020930	Msa1111180	0.814066	1.861163e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111180	MtrunA17_Chr7g0246111	91.120	518	5	6	1	489	1	506	0.0	927
Msa1111180	MtrunA17_Chr6g0459561	48.013	302	143	6	197	488	362	659	2.59e-93	296
Msa1111180	MtrunA17_Chr6g0459541	44.308	325	134	7	203	488	28	344	3.27e-88	274
Msa1111180	MtrunA17_Chr4g0026631	42.769	325	145	5	200	487	110	430	1.65e-77	249
Msa1111180	MtrunA17_Chr2g0321241	42.593	324	145	5	201	487	116	435	2.23e-77	249
Msa1111180	MtrunA17_Chr6g0459551	38.889	378	170	11	151	486	44	402	7.73e-77	247
Msa1111180	MtrunA17_Chr4g0004121	38.021	384	209	8	125	488	154	528	6.87e-75	245
Msa1111180	MtrunA17_Chr4g0052271	50.400	250	117	4	202	449	104	348	3.76e-74	239
Msa1111180	MtrunA17_Chr4g0038101	43.860	285	142	6	217	487	721	1001	1.46e-68	237
Msa1111180	MtrunA17_Chr5g0397121	42.122	311	131	9	217	487	513	814	7.71e-68	233

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111180	AT2G45500.1	69.323	502	130	5	1	489	1	491	0.0	668
Msa1111180	AT2G45500.2	69.461	501	127	6	1	489	1	487	0.0	660
Msa1111180	AT2G45500.5	69.461	501	127	6	1	489	11	497	0.0	659
Msa1111180	AT2G45500.4	82.792	308	45	2	187	489	50	354	0.0	520
Msa1111180	AT2G45500.3	82.792	308	45	2	187	489	50	354	0.0	520
Msa1111180	AT3G27120.1	49.338	302	139	6	197	488	380	677	5.18e-94	299
Msa1111180	AT2G27600.1	42.769	325	145	5	200	487	112	432	2.24e-77	249
Msa1111180	AT1G80350.1	43.590	312	153	6	196	488	215	522	5.02e-76	248
Msa1111180	AT2G34560.1	43.046	302	151	6	202	488	85	380	1.95e-72	234
Msa1111180	AT2G34560.2	43.046	302	151	6	202	488	94	389	2.33e-72	234

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Find 109 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAGCTTTAATGGAGA+TGG	0.543064	7_3:-56901912	Msa1111180:CDS
AAAGGCAAAGCAAGCTTTAA+TGG	0.312478	7_3:-56901918	Msa1111180:CDS
AAATCCAGGTGGCCTGGAAA+AGG	0.456194	7_3:-56901936	Msa1111180:intron
AACAAGTCTCTTCTCTTTGT+TGG	0.337816	7_3:+56901881	None:intergenic
AACCAATAAGCCACAGGAAT+TGG	0.397626	7_3:-56899993	Msa1111180:CDS
AAGAAATCGATAAAGCTGTT+AGG	0.359640	7_3:-56903898	Msa1111180:CDS
AAGAGAAGAGACTTGTTCAC+TGG	0.560846	7_3:-56901875	Msa1111180:CDS
AAGCTGTTAGGGCTGAAGAA+TGG	0.453233	7_3:-56903886	Msa1111180:CDS
AAGGACGACAAATGAAAATG+AGG	0.591136	7_3:-56900772	Msa1111180:CDS
AAGTTTAAACAAAAGTAAAT+GGG	0.518697	7_3:-56898935	Msa1111180:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAATCGATAAAGCTGTT+AGG	-	chr7_3:56899018-56899037	Msa1111180:intron	30.0%
AGAAATCGATAAAGCTGTTA+GGG	-	chr7_3:56899019-56899038	Msa1111180:intron	30.0%
GGTTTCTGCTATATTAATGA+TGG	-	chr7_3:56899152-56899171	Msa1111180:CDS	30.0%
TCTTAGAGTTGTTCTTAGTT+TGG	-	chr7_3:56899401-56899420	Msa1111180:intron	30.0%
TCGATAAAATCTCATGATCA+TGG	-	chr7_3:56899643-56899662	Msa1111180:CDS	30.0%
ATTACTGTCAATTGAAGACT+TGG	-	chr7_3:56899729-56899748	Msa1111180:intron	30.0%
AGCTTCTCAATAAGAACTTA+TGG	-	chr7_3:56899767-56899786	Msa1111180:intron	30.0%
ATGATTAACTCACTGAATTC+GGG	+	chr7_3:56900093-56900112	None:intergenic	30.0%
TCAAAAGATATCAAAATGGC+AGG	-	chr7_3:56900290-56900309	Msa1111180:intron	30.0%
CAAAAGATATCAAAATGGCA+GGG	-	chr7_3:56900291-56900310	Msa1111180:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	56898622	56904316	56898622	ID=Msa1111180;Name=Msa1111180
chr7_3	mRNA	56898622	56904316	56898622	ID=Msa1111180-mRNA-1;Parent=Msa1111180;Name=Msa1111180-mRNA-1;_AED=0.09;_eAED=0.09;_QI=215\|0.69\|0.78\|0.92\|1\|1\|14\|272\|489
chr7_3	exon	56898622	56899010	56898622	ID=Msa1111180-mRNA-1:exon:12098;Parent=Msa1111180-mRNA-1
chr7_3	exon	56899136	56899218	56899136	ID=Msa1111180-mRNA-1:exon:12097;Parent=Msa1111180-mRNA-1
chr7_3	exon	56899360	56899395	56899360	ID=Msa1111180-mRNA-1:exon:12096;Parent=Msa1111180-mRNA-1
chr7_3	exon	56899634	56899724	56899634	ID=Msa1111180-mRNA-1:exon:12095;Parent=Msa1111180-mRNA-1
chr7_3	exon	56899970	56900019	56899970	ID=Msa1111180-mRNA-1:exon:12094;Parent=Msa1111180-mRNA-1
chr7_3	exon	56900691	56900814	56900691	ID=Msa1111180-mRNA-1:exon:12093;Parent=Msa1111180-mRNA-1
chr7_3	exon	56901241	56901249	56901241	ID=Msa1111180-mRNA-1:exon:12092;Parent=Msa1111180-mRNA-1
chr7_3	exon	56901450	56901530	56901450	ID=Msa1111180-mRNA-1:exon:12091;Parent=Msa1111180-mRNA-1
chr7_3	exon	56901635	56901750	56901635	ID=Msa1111180-mRNA-1:exon:12090;Parent=Msa1111180-mRNA-1
chr7_3	exon	56901855	56901950	56901855	ID=Msa1111180-mRNA-1:exon:12089;Parent=Msa1111180-mRNA-1
chr7_3	exon	56902024	56902243	56902024	ID=Msa1111180-mRNA-1:exon:12088;Parent=Msa1111180-mRNA-1
chr7_3	exon	56902450	56902469	56902450	ID=Msa1111180-mRNA-1:exon:12087;Parent=Msa1111180-mRNA-1
chr7_3	exon	56902584	56902699	56902584	ID=Msa1111180-mRNA-1:exon:12086;Parent=Msa1111180-mRNA-1
chr7_3	exon	56903791	56904316	56903791	ID=Msa1111180-mRNA-1:exon:12085;Parent=Msa1111180-mRNA-1
chr7_3	five_prime_UTR	56904102	56904316	56904102	ID=Msa1111180-mRNA-1:five_prime_utr;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56903791	56904101	56903791	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56902584	56902699	56902584	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56902450	56902469	56902450	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56902024	56902243	56902024	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56901855	56901950	56901855	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56901635	56901750	56901635	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56901450	56901530	56901450	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56901241	56901249	56901241	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56900691	56900814	56900691	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56899970	56900019	56899970	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56899634	56899724	56899634	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56899360	56899395	56899360	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56899136	56899218	56899136	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	CDS	56898894	56899010	56898894	ID=Msa1111180-mRNA-1:cds;Parent=Msa1111180-mRNA-1
chr7_3	three_prime_UTR	56898622	56898893	56898622	ID=Msa1111180-mRNA-1:three_prime_utr;Parent=Msa1111180-mRNA-1

Gene Sequence

>Msa1111180

ATGAGTTTTTTGCAGGGAATCATTGATTCCTTTAACTCTGTTTTCTCTCCTCAATCTTCTTCTTCTTCTCAAACCAATTTCAGTGCTTCTTCAATGGAAGCTTCACCTTCTTCTCCTTCTTCTTCGGTTTCAAACGAACGCGTCGCGTATAAGCTGAAAGGCTACTACGATTTAGCAACACAAGAAATCGATAAAGCTGTTAGGGCTGAAGAATGGGGTTTGGTTGATGACGCTATTCTTCACTACAGGAATGCTCATAGGATCCTTCTCGAAGCTAGTTCTACTCCTGTTCCTTCATTCATCACTCCCAGAATCCATAATCTTGTGTGTGACAGTGAGAAACAGAAAGTACAATCATATCGTCAAAAGATATCAAAATGGCAGGGACAAGTTTCTGAGAGATTGCAGGCTCTCAGTAGACGAGCAGGTAGCTCATTTGCCAATCAGAGCACCTCAAACCGTGCACAAACTGCTGCAGTTCCAACTAAACTATCAAATACTACAAAAAAAGTGCTACAAAAGAATCCTCAAAGAAAAGATGAGGTGAATAAAGTTCAAAGCCCGAAACCTAGTCAAACATCTGGTGAAAATTATGATACGAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTTCGATGGGACGATGTTGGTGGCCTGGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACAAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGACCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGTAAGACCATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACGTCAAAATGGGTGGGTGAAGCTGAAAAGCTTGTACGGACACTATTCTTGGTAGCTGTATCGAGACAGCCATCTGTAATTTTCATTGATGAGAACGTAGATATTGATAGTATAATGTCAACAAGGACGACAAATGAAAATGAGGCCAGCAGACGATTAAAATCTGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGACATTGTGATTGTAATTGGTGCAACCAATAAGCCACAGGAATTGGATGATGCCGTTCTTAGGAGACTGGTTAAGAGAATATATGTACCTTTACCAAATGAAAATGTTAGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCGTTCTCCTTACCTAGTAGAGATCTAGAGATGCTGGTAAAAGAAACCGAAGGATACTCTGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTTCTAACATTCTCACCGTAAGAGGACTGAGGTATGAGGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAGAGATGGAATGAGGAGTTTGGTTCAAATTGA

Protein sequence

>Msa1111180

MSFLQGIIDSFNSVFSPQSSSSSQTNFSASSMEASPSSPSSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLVDDAILHYRNAHRILLEASSTPVPSFITPRIHNLVCDSEKQKVQSYRQKISKWQGQVSERLQALSRRAGSSFANQSTSNRAQTAAVPTKLSNTTKKVLQKNPQRKDEVNKVQSPKPSQTSGENYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFLVAVSRQPSVIFIDENVDIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVRGLRYEDFKKAMAVIRPSLNKSKWEELERWNEEFGSN*