AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1255670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255670 MtrunA17_Chr8g0374061 97.154 492 14 0 1 492 295 786 0.0 989
Msa1255670 MtrunA17_Chr5g0402991 79.796 490 98 1 1 489 417 906 0.0 783
Msa1255670 MtrunA17_Chr1g0162561 54.433 485 210 5 1 482 386 862 8.15e-177 519
Msa1255670 MtrunA17_Chr6g0479291 51.688 474 214 4 1 470 444 906 7.55e-166 492
Msa1255670 MtrunA17_Chr5g0410081 49.793 482 217 7 1 470 347 815 2.70e-155 462
Msa1255670 MtrunA17_Chr1g0151141 31.034 406 213 16 81 481 39 382 1.46e-42 155
Msa1255670 MtrunA17_Chr3g0136391 28.019 207 121 9 183 380 6 193 7.48e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255670 AT2G23460.1 65.191 497 154 7 1 489 402 887 0.0 655
Msa1255670 AT1G31930.5 48.310 503 231 8 1 487 352 841 4.76e-157 468
Msa1255670 AT1G31930.2 48.310 503 231 8 1 487 352 841 4.76e-157 468
Msa1255670 AT1G31930.3 48.310 503 231 8 1 487 352 841 4.76e-157 468
Msa1255670 AT1G31930.6 48.310 503 231 8 1 487 352 841 4.76e-157 468
Msa1255670 AT1G31930.1 48.310 503 231 8 1 487 352 841 4.76e-157 468
Msa1255670 AT1G31930.4 48.310 503 231 8 1 487 352 841 4.76e-157 468
Msa1255670 AT4G34390.1 46.894 499 227 13 1 489 391 861 1.21e-135 413
Msa1255670 AT4G34390.2 43.487 499 205 12 1 489 391 822 2.90e-119 369
Msa1255670 AT2G26300.2 30.221 407 207 15 81 481 38 373 7.04e-44 159
Msa1255670 AT2G26300.1 30.221 407 207 15 81 481 38 373 7.04e-44 159

Find 151 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAATTATGTTTGTGTTAA+TGG -0.030823 8_2:+54615984 Msa1255670:five_prime_UTR
TTAGTTGGTTACAGTGGTTC+TGG 0.208812 8_2:+54617266 Msa1255670:CDS
TCTTTCATAGGTGGCCTTAA+TGG 0.220641 8_2:-54618921 None:intergenic
CCATTAACACAAACATAATT+AGG 0.225925 8_2:-54615984 None:intergenic
TGTTGCTTCCGGGGCGATTA+TGG 0.227370 8_2:-54620780 None:intergenic
TGAGTCGAAAAGGGGTAGTT+TGG 0.252243 8_2:+54615866 Msa1255670:five_prime_UTR
AGTTGAAGCCTGGGAATTAT+TGG 0.264675 8_2:+54616066 Msa1255670:five_prime_UTR
TATTGGTATGATAAAGTATC+TGG 0.266566 8_2:+54616083 Msa1255670:five_prime_UTR
AATTTCATTTCTTCTTTCAT+AGG 0.286663 8_2:-54618933 None:intergenic
AAAATACCAGAGGATATATA+TGG 0.289700 8_2:+54617015 Msa1255670:CDS
CTGCTGAAAACAATGGTTTC+GGG 0.290755 8_2:+54618824 Msa1255670:CDS
ATGGAATGATTCAGCCATTA+AGG 0.293365 8_2:+54618907 Msa1255670:CDS
AGGCTTTATTCATCTCTTAC+AGG 0.300651 8_2:+54620871 Msa1255670:CDS
CTCCATTGATTGAGGAGTTA+TGG 0.303658 8_2:+54618888 Msa1255670:CDS
GTTGATGCATCACTTAAATA+TGG 0.305227 8_2:+54620940 Msa1255670:CDS
ATGCAGTTATTGTTGCTTCC+GGG 0.311430 8_2:-54620790 None:intergenic
AATGCAGTTATTGTTGCTTC+CGG 0.312949 8_2:-54620791 None:intergenic
GACAAGACAATTTATTCTAT+TGG 0.325280 8_2:+54618773 Msa1255670:CDS
AGTGATGCATCAACACTATC+AGG 0.335259 8_2:-54620931 None:intergenic
ATTGCTAGCATCCTGTTTGA+TGG 0.335755 8_2:-54616736 None:intergenic
TTCCCAGGCTTCAACTTCTT+AGG 0.339509 8_2:-54616059 None:intergenic
GCTGCTGAAAACAATGGTTT+CGG 0.344305 8_2:+54618823 Msa1255670:CDS
TAGAAGATTGCTTAATAGAT+TGG 0.359406 8_2:+54615908 Msa1255670:five_prime_UTR
CAATCAGCTCCTGAGGAAAC+TGG 0.366401 8_2:+54619317 Msa1255670:CDS
GTAGTTTGGGAAAGTGTTCT+AGG 0.373702 8_2:+54615880 Msa1255670:five_prime_UTR
ATGGGAAGCAAGCTGACTTA+TGG 0.374033 8_2:-54620827 None:intergenic
ACATAGCAGTTAAGTTTAAG+AGG 0.376994 8_2:+54620851 Msa1255670:CDS
GGGCGATTATGGCTAATTAC+TGG 0.377914 8_2:-54620769 None:intergenic
AAACTTAACTGCTATGTAAT+GGG 0.388885 8_2:-54620845 None:intergenic
CTAATTTGTTTAAAATCAAC+AGG 0.393967 8_2:-54620681 None:intergenic
CACAAGACTGAAAGCATTCT+CGG 0.396380 8_2:+54618796 Msa1255670:CDS
ATTCCATGCTCAACATAATC+AGG 0.399350 8_2:-54617227 None:intergenic
TAGTTGGTTACAGTGGTTCT+GGG 0.405869 8_2:+54617267 Msa1255670:CDS
TCATCACTTAGGCTAAAGTT+TGG 0.405955 8_2:-54620994 None:intergenic
TACCCGCTCTAAGAAATAAC+TGG 0.409765 8_2:-54618975 None:intergenic
TAAACTTAACTGCTATGTAA+TGG 0.427547 8_2:-54620846 None:intergenic
ACCAATGTCTATGCCTATCT+TGG 0.429777 8_2:+54617800 Msa1255670:CDS
AGTAGAGCTTCGGATGTTGC+AGG 0.429823 8_2:+54616800 Msa1255670:exon
AAGTAACTCCCTCAGCATAA+AGG 0.430211 8_2:-54619256 None:intergenic
GAGTCGAAAAGGGGTAGTTT+GGG 0.446679 8_2:+54615867 Msa1255670:five_prime_UTR
GTTCACAAGCTCCTCTTAGT+TGG 0.453699 8_2:+54617251 Msa1255670:CDS
CATGAAGTTGAATATCTAGA+AGG 0.456871 8_2:-54617167 None:intergenic
ACAATACATGCAAGAGGGCT+AGG 0.461118 8_2:+54620478 Msa1255670:CDS
CAACATCCGAAGCTCTACTT+TGG 0.466804 8_2:-54616796 None:intergenic
TTGCTAGCATCCTGTTTGAT+GGG 0.468192 8_2:-54616735 None:intergenic
GTTGAATATCTAGAAGGAAC+TGG 0.468960 8_2:-54617161 None:intergenic
TTCCATAACTCCTCAATCAA+TGG 0.468963 8_2:-54618890 None:intergenic
CTCTAGGAGTATGCCAAGAT+AGG 0.469631 8_2:-54617813 None:intergenic
TTCATTTCTTCTTTCATAGG+TGG 0.469694 8_2:-54618930 None:intergenic
GACTGAAAGCATTCTCGGAT+TGG 0.470361 8_2:+54618801 Msa1255670:CDS
TAATAGATTGGAAGTTAGAC+AGG 0.472344 8_2:+54615920 Msa1255670:five_prime_UTR
CTCCTAAGAAGTTGAAGCCT+GGG 0.472595 8_2:+54616057 Msa1255670:five_prime_UTR
CCACGTTCATCTTCTGAGAA+GGG 0.475306 8_2:-54617755 None:intergenic
CAATCTTTACTTCATACTAC+AGG 0.478286 8_2:+54617884 Msa1255670:CDS
GGCATAGACATTGGTCTGAA+TGG 0.479410 8_2:-54617792 None:intergenic
CTTTCCCCATATATATCCTC+TGG 0.479458 8_2:-54617021 None:intergenic
AAATACCAGAGGATATATAT+GGG 0.480469 8_2:+54617016 Msa1255670:CDS
TAAGAAATAACTGGCAACAC+TGG 0.480568 8_2:-54618966 None:intergenic
TTCGATTGATGAGTCGAAAA+GGG 0.483003 8_2:+54615857 Msa1255670:five_prime_UTR
CACGTTCATCTTCTGAGAAG+GGG 0.486683 8_2:-54617754 None:intergenic
AAATAACCAAAGTAGAGCTT+CGG 0.487942 8_2:+54616790 Msa1255670:five_prime_UTR
CCTCCTAAGAAGTTGAAGCC+TGG 0.488241 8_2:+54616056 Msa1255670:five_prime_UTR
CCAGGCTTCAACTTCTTAGG+AGG 0.493479 8_2:-54616056 None:intergenic
ATTCGATTGATGAGTCGAAA+AGG 0.500157 8_2:+54615856 Msa1255670:five_prime_UTR
TCAGTGTCGCCAGTTTCCTC+AGG 0.501483 8_2:-54619326 None:intergenic
AACATAATCAGGAAACGTTC+TGG 0.504505 8_2:-54617216 None:intergenic
CTCCTCTTAGTTGGTTACAG+TGG 0.510847 8_2:+54617260 Msa1255670:CDS
TTTCCTGATTATGTTGAGCA+TGG 0.512002 8_2:+54617224 Msa1255670:CDS
TGCAGTTATTGTTGCTTCCG+GGG 0.512163 8_2:-54620789 None:intergenic
GTTTCCTCAGGAGCTGATTG+AGG 0.512503 8_2:-54619314 None:intergenic
TTATCATACCAATAATTCCC+AGG 0.519319 8_2:-54616074 None:intergenic
CTCTACACTAGCCAGTCCAT+TGG 0.519756 8_2:-54619282 None:intergenic
TCCACGTTCATCTTCTGAGA+AGG 0.522295 8_2:-54617756 None:intergenic
CTTGTACATATATGTCAACT+AGG 0.522877 8_2:+54621123 Msa1255670:three_prime_UTR
ATTACTCCTCATCTGAATGT+TGG 0.523583 8_2:+54616708 Msa1255670:five_prime_UTR
TGTTGGTGGACCCATCAAAC+AGG 0.525733 8_2:+54616725 Msa1255670:five_prime_UTR
TGAATATACTCCATTGATTG+AGG 0.526050 8_2:+54618880 Msa1255670:CDS
GCAAAACTTGTATGTGTCCT+TGG 0.526820 8_2:+54620894 Msa1255670:CDS
AATATCTAGAAGGAACTGGC+AGG 0.527164 8_2:-54617157 None:intergenic
AACCACTGTAACCAACTAAG+AGG 0.530916 8_2:-54617262 None:intergenic
TGCCAGTTATTTCTTAGAGC+GGG 0.531833 8_2:+54618973 Msa1255670:CDS
GACGACTGACTATGAACCCT+CGG 0.534075 8_2:+54619223 Msa1255670:CDS
GGAAGTTAGACAGGTGATGA+AGG 0.536530 8_2:+54615929 Msa1255670:five_prime_UTR
TGTGTCCTTGGTGAAGGGAC+TGG 0.537106 8_2:+54620906 Msa1255670:CDS
TTAGATATCCTTTATGCTGA+GGG 0.537659 8_2:+54619248 Msa1255670:CDS
TTCCACTGACTCAGTGTGAA+TGG 0.538485 8_2:+54620731 Msa1255670:CDS
ACTCCTCATCTGAATGTTGG+TGG 0.538730 8_2:+54616711 Msa1255670:five_prime_UTR
GTATATTCACGAGTAGCAGC+TGG 0.539544 8_2:-54618866 None:intergenic
TACACTAGCCAGTCCATTGG+AGG 0.540269 8_2:-54619279 None:intergenic
GCATATTACAACTCGATAGC+CGG 0.540766 8_2:-54621175 None:intergenic
ATTTCCTCAATCAGCTCCTG+AGG 0.544474 8_2:+54619310 Msa1255670:CDS
GGCTTTATTCATCTCTTACA+GGG 0.545678 8_2:+54620872 Msa1255670:CDS
AATGTTTGAGGATGTCGGAT+TGG 0.548736 8_2:+54620522 Msa1255670:CDS
TTTAGATATCCTTTATGCTG+AGG 0.549717 8_2:+54619247 Msa1255670:CDS
CAAAACGCTCACGACCCTCT+AGG 0.552090 8_2:-54617829 None:intergenic
TTGGCGGGAGTTCAATGTGC+TGG 0.552542 8_2:+54616939 Msa1255670:CDS
CTAGAAATGTTTGAGGATGT+CGG 0.553914 8_2:+54620517 Msa1255670:CDS
CAAACAAGATGATATTGAGC+AGG 0.556837 8_2:+54620608 Msa1255670:CDS
AACCATTCACACTGAGTCAG+TGG 0.557571 8_2:-54620733 None:intergenic
TCTAGATATTCAACTTCATG+TGG 0.557912 8_2:+54617170 Msa1255670:CDS
GGAAGCAAGCTGACTTATGG+AGG 0.558029 8_2:-54620824 None:intergenic
CGTTCTGGCAACCACATTGG+AGG 0.567374 8_2:-54617201 None:intergenic
AAACGTTCTGGCAACCACAT+TGG 0.567600 8_2:-54617204 None:intergenic
AAGAAATAACTGGCAACACT+GGG 0.572192 8_2:-54618965 None:intergenic
CTTGTATGTGTCCTTGGTGA+AGG 0.573931 8_2:+54620900 Msa1255670:CDS
CCAGGAACCAGTCGAAAACA+TGG 0.574447 8_2:+54618749 Msa1255670:intron
ATCTACATGATTCTTTAGCT+AGG 0.575020 8_2:+54619351 Msa1255670:CDS
AAAAGTTGGATGAGTAACAA+TGG 0.577572 8_2:-54620644 None:intergenic
TAGAAGGAACTGGCAGGGAA+AGG 0.581492 8_2:-54617151 None:intergenic
ATCAAACAGGATGCTAGCAA+TGG 0.583383 8_2:+54616738 Msa1255670:five_prime_UTR
AGGAACTGGCAGGGAAAGGA+AGG 0.585903 8_2:-54617147 None:intergenic
GAGGGAGTTACTTCCTCCAA+TGG 0.586867 8_2:+54619266 Msa1255670:CDS
AAACAGATTATAGTCACTCA+AGG 0.588599 8_2:-54620560 None:intergenic
TGCTAGCAATGGAGACACTC+AGG 0.588635 8_2:+54616749 Msa1255670:five_prime_UTR
TTAACACAAACATAATTAGG+AGG 0.589324 8_2:-54615981 None:intergenic
TCGAAGTCATGTGTGTGACT+TGG 0.590162 8_2:+54621092 Msa1255670:three_prime_UTR
AGTTACTTCCTCCAATGGAC+TGG 0.592995 8_2:+54619271 Msa1255670:CDS
TGCATCACTTAAATATGGAA+AGG 0.594346 8_2:+54620945 Msa1255670:CDS
CAGAGGATATATATGGGGAA+AGG 0.604772 8_2:+54617022 Msa1255670:CDS
ATAAAGGATATCTAAATCCG+AGG 0.608937 8_2:-54619240 None:intergenic
GTAATTAGCCATAATCGCCC+CGG 0.612793 8_2:+54620772 Msa1255670:CDS
CTATCTTGGCATACTCCTAG+AGG 0.613049 8_2:+54617814 Msa1255670:CDS
TAAAGGATATCTAAATCCGA+GGG 0.615785 8_2:-54619239 None:intergenic
CGGAAGCACATTCTTCCCAC+CGG 0.616043 8_2:+54621156 Msa1255670:three_prime_UTR
CTAATTACAATACATGCAAG+AGG 0.619805 8_2:+54620472 Msa1255670:CDS
TTGCCAGTTATTTCTTAGAG+CGG 0.620183 8_2:+54618972 Msa1255670:CDS
TTGTATGTGTCCTTGGTGAA+GGG 0.620314 8_2:+54620901 Msa1255670:CDS
ACGTTCATCTTCTGAGAAGG+GGG 0.626070 8_2:-54617753 None:intergenic
TATCTTGGCATACTCCTAGA+GGG 0.627233 8_2:+54617815 Msa1255670:CDS
GATGGTTCATACCAAGAAGA+GGG 0.629926 8_2:+54616987 Msa1255670:CDS
GAAGCAAGCTGACTTATGGA+GGG 0.632572 8_2:-54620823 None:intergenic
ATATCTAGAAGGAACTGGCA+GGG 0.634213 8_2:-54617156 None:intergenic
AGATGGTTCATACCAAGAAG+AGG 0.635006 8_2:+54616986 Msa1255670:CDS
GACAGGTGATGAAGGCTGAG+AGG 0.637814 8_2:+54615937 Msa1255670:five_prime_UTR
TATTACAACTCGATAGCCGG+TGG 0.639399 8_2:-54621172 None:intergenic
GCCAAGATAGGCATAGACAT+TGG 0.641812 8_2:-54617801 None:intergenic
CAAGTGGCTAGAAATGTTTG+AGG 0.645542 8_2:+54620510 Msa1255670:CDS
GGCTAGGAGATAATTGCAAG+TGG 0.651519 8_2:+54620494 Msa1255670:CDS
TCGATTGATGAGTCGAAAAG+GGG 0.653263 8_2:+54615858 Msa1255670:five_prime_UTR
TGAGGAGTAATAATGCTACA+AGG 0.661649 8_2:-54616696 None:intergenic
AATACCAGAGGATATATATG+GGG 0.662414 8_2:+54617017 Msa1255670:CDS
CCCTTCTCAGAAGATGAACG+TGG 0.664045 8_2:+54617755 Msa1255670:CDS
GGATTGGCTGCTGAAAACAA+TGG 0.672809 8_2:+54618817 Msa1255670:CDS
GGTCCACCAACATTCAGATG+AGG 0.674166 8_2:-54616714 None:intergenic
TAATTACAATACATGCAAGA+GGG 0.678522 8_2:+54620473 Msa1255670:CDS
TGTGACACAACCATTTCCGT+CGG 0.683482 8_2:-54620587 None:intergenic
ATTACAACTCGATAGCCGGT+GGG 0.691140 8_2:-54621171 None:intergenic
GTCAACTAGGAGTAGTGACA+CGG 0.695235 8_2:+54621136 Msa1255670:three_prime_UTR
AAGCAAGCTGACTTATGGAG+GGG 0.697438 8_2:-54620822 None:intergenic
AGGTTCCAGTCCCTTCACCA+AGG 0.701228 8_2:-54620911 None:intergenic
TATGCATCGAGTCATCACTT+AGG 0.735174 8_2:-54621005 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTAAAATATTATATATG+TGG + chr8_2:54617996-54618015 Msa1255670:intron 10.0%
!! TAAATTTATACATATGTTTA+AGG + chr8_2:54618079-54618098 Msa1255670:intron 10.0%
!!! ATATATATTTATTTGTTACA+AGG + chr8_2:54618611-54618630 Msa1255670:intron 10.0%
!! AGAAAAAATAAAATGTTAAT+TGG + chr8_2:54618709-54618728 Msa1255670:intron 10.0%
!! AAATACTAATAGAAAATTAC+AGG + chr8_2:54616842-54616861 Msa1255670:intron 15.0%
!! TTTAAACAAAAAATGTTGAA+AGG + chr8_2:54616896-54616915 Msa1255670:intron 15.0%
!! AAAATTAGCATATTATAGTT+GGG - chr8_2:54617940-54617959 None:intergenic 15.0%
!! AAAAATTAGCATATTATAGT+TGG - chr8_2:54617941-54617960 None:intergenic 15.0%
!! AAGAAAAAATTGTTATATGT+TGG + chr8_2:54619375-54619394 Msa1255670:intron 15.0%
!! AATATAATTATACAGCAATT+GGG - chr8_2:54619432-54619451 None:intergenic 15.0%
!! AAATATAATTATACAGCAAT+TGG - chr8_2:54619433-54619452 None:intergenic 15.0%
!! TGTGTTAAATTTATAAGTTT+AGG - chr8_2:54619808-54619827 None:intergenic 15.0%
!! ACAATTATGTCATAAAAATA+TGG + chr8_2:54620277-54620296 Msa1255670:intron 15.0%
!!! TCTGTAAATACATATTTTTT+GGG + chr8_2:54620368-54620387 Msa1255670:intron 15.0%
!!! TTGTTGATTTCAAACTATTA+CGG + chr8_2:54617473-54617492 Msa1255670:intron 20.0%
!!! AAATTGTAAGTACTTTTTTC+AGG + chr8_2:54617709-54617728 Msa1255670:intron 20.0%
!! AAATTAGCATATTATAGTTG+GGG - chr8_2:54617939-54617958 None:intergenic 20.0%
!! AATATTATATATGTGGTATG+TGG + chr8_2:54618003-54618022 Msa1255670:intron 20.0%
!! TAAATTTAACATAAACCATC+AGG - chr8_2:54618067-54618086 None:intergenic 20.0%
!! TTAATTGGCTAGTATTATTT+GGG + chr8_2:54618724-54618743 Msa1255670:intron 20.0%
!! AATTTCATTTCTTCTTTCAT+AGG - chr8_2:54618936-54618955 None:intergenic 20.0%
!! AACATGATAATTATTTGTTC+AGG + chr8_2:54619187-54619206 Msa1255670:intron 20.0%
!!! AAAAAAATATTTTGTAGCTC+AGG + chr8_2:54619869-54619888 Msa1255670:intron 20.0%
!!! GTCATTTATTTTCAAATGAT+TGG + chr8_2:54620230-54620249 Msa1255670:intron 20.0%
!! ACATAATTGTGATATACATT+TGG - chr8_2:54620267-54620286 None:intergenic 20.0%
!!! CTCTGTAAATACATATTTTT+TGG + chr8_2:54620367-54620386 Msa1255670:intron 20.0%
!!! TAAATACATATTTTTTGGGA+GGG + chr8_2:54620372-54620391 Msa1255670:intron 20.0%
!!! CTAATTTGTTTAAAATCAAC+AGG - chr8_2:54620684-54620703 None:intergenic 20.0%
! TAGAAGATTGCTTAATAGAT+TGG + chr8_2:54615908-54615927 Msa1255670:five_prime_UTR 25.0%
! TTAACACAAACATAATTAGG+AGG - chr8_2:54615984-54616003 None:intergenic 25.0%
! CCATTAACACAAACATAATT+AGG - chr8_2:54615987-54616006 None:intergenic 25.0%
! CCTAATTATGTTTGTGTTAA+TGG + chr8_2:54615984-54616003 Msa1255670:five_prime_UTR 25.0%
!! TATTGGTATGATAAAGTATC+TGG + chr8_2:54616083-54616102 Msa1255670:five_prime_UTR 25.0%
!!! ATGATAAAGTATCTGGTTTT+TGG + chr8_2:54616090-54616109 Msa1255670:five_prime_UTR 25.0%
!!! TGATAAAGTATCTGGTTTTT+GGG + chr8_2:54616091-54616110 Msa1255670:five_prime_UTR 25.0%
! TGTTTCCAACTTATGTTTAT+AGG + chr8_2:54616277-54616296 Msa1255670:intron 25.0%
! GTTATCCTATAAACATAAGT+TGG - chr8_2:54616285-54616304 None:intergenic 25.0%
! CTTTCTGTGAATATTTATAG+AGG - chr8_2:54616385-54616404 None:intergenic 25.0%
! AAAATACCAGAGGATATATA+TGG + chr8_2:54617015-54617034 Msa1255670:CDS 25.0%
! AAATACCAGAGGATATATAT+GGG + chr8_2:54617016-54617035 Msa1255670:CDS 25.0%
!! AGTGTTTAAGATTGCAAAAT+TGG - chr8_2:54617090-54617109 None:intergenic 25.0%
! ACTATGAAGTCAATTAAAGA+AGG - chr8_2:54617412-54617431 None:intergenic 25.0%
!! TCTTTAATTGACTTCATAGT+TGG + chr8_2:54617412-54617431 Msa1255670:intron 25.0%
!!! ATACTCAATTTTTTTTCCCA+GGG - chr8_2:54617605-54617624 None:intergenic 25.0%
!! TTTAAAACGGAAAGAAAGTT+TGG - chr8_2:54617984-54618003 None:intergenic 25.0%
!!! ACTGATTTGTAAATACGATA+TGG + chr8_2:54618365-54618384 Msa1255670:intron 25.0%
!!! ATGTTTTTTCCTCTCAATTT+TGG + chr8_2:54618393-54618412 Msa1255670:intron 25.0%
!!! TGTTTTTTCCTCTCAATTTT+GGG + chr8_2:54618394-54618413 Msa1255670:intron 25.0%
! AACTAATTGAAATAGCATGT+GGG - chr8_2:54618487-54618506 None:intergenic 25.0%
! AAACTAATTGAAATAGCATG+TGG - chr8_2:54618488-54618507 None:intergenic 25.0%
!! ATTGCACATTTTGTACATTT+TGG + chr8_2:54618526-54618545 Msa1255670:intron 25.0%
! GTTAATTGGCTAGTATTATT+TGG + chr8_2:54618723-54618742 Msa1255670:intron 25.0%
! GACAAGACAATTTATTCTAT+TGG + chr8_2:54618773-54618792 Msa1255670:CDS 25.0%
!!! CTTGAACTTATTTTTGTCAA+TGG + chr8_2:54619015-54619034 Msa1255670:intron 25.0%
! GGAAACATGTAAGAAAATAA+GGG - chr8_2:54619113-54619132 None:intergenic 25.0%
! AGGAAACATGTAAGAAAATA+AGG - chr8_2:54619114-54619133 None:intergenic 25.0%
! TTACATGTTTCCTTTCTATT+TGG + chr8_2:54619121-54619140 Msa1255670:intron 25.0%
! TTCTCTTGAAAAAGATTACT+AGG + chr8_2:54619145-54619164 Msa1255670:intron 25.0%
!!! CTTTTTCATGAAATGTTTAG+AGG - chr8_2:54619633-54619652 None:intergenic 25.0%
!!! AAGAATGCTAGATTTTTCAA+GGG - chr8_2:54619715-54619734 None:intergenic 25.0%
!! AAAGAATGCTAGATTTTTCA+AGG - chr8_2:54619716-54619735 None:intergenic 25.0%
! TAAAAAGCTTAAAACTCTGT+AGG - chr8_2:54619777-54619796 None:intergenic 25.0%
! CCAATACAAAAGATCATATT+AGG - chr8_2:54620005-54620024 None:intergenic 25.0%
!! CCTAATATGATCTTTTGTAT+TGG + chr8_2:54620002-54620021 Msa1255670:intron 25.0%
!! AACACAGGAAAACTTTTATA+TGG - chr8_2:54620193-54620212 None:intergenic 25.0%
! GTGATATACATTTGGAAATA+AGG - chr8_2:54620259-54620278 None:intergenic 25.0%
!!! GTAAATACATATTTTTTGGG+AGG + chr8_2:54620371-54620390 Msa1255670:intron 25.0%
!!! AAATACATATTTTTTGGGAG+GGG + chr8_2:54620373-54620392 Msa1255670:intron 25.0%
! TAATTACAATACATGCAAGA+GGG + chr8_2:54620473-54620492 Msa1255670:CDS 25.0%
!!! TCATCCAACTTTTAAGAAAA+TGG + chr8_2:54620654-54620673 Msa1255670:CDS 25.0%
!! AAGTCCATTTTCTTAAAAGT+TGG - chr8_2:54620661-54620680 None:intergenic 25.0%
! AAACTTAACTGCTATGTAAT+GGG - chr8_2:54620848-54620867 None:intergenic 25.0%
! TAAACTTAACTGCTATGTAA+TGG - chr8_2:54620849-54620868 None:intergenic 25.0%
TAATAGATTGGAAGTTAGAC+AGG + chr8_2:54615920-54615939 Msa1255670:five_prime_UTR 30.0%
TTATCATACCAATAATTCCC+AGG - chr8_2:54616077-54616096 None:intergenic 30.0%
!!! GATAAAGTATCTGGTTTTTG+GGG + chr8_2:54616092-54616111 Msa1255670:five_prime_UTR 30.0%
AAGCATCAGACAAAAAAGTT+TGG - chr8_2:54616627-54616646 None:intergenic 30.0%
! CTTGAAGTTGAGTTTTACTT+GGG + chr8_2:54616644-54616663 Msa1255670:intron 30.0%
! TTGAAGTTGAGTTTTACTTG+GGG + chr8_2:54616645-54616664 Msa1255670:intron 30.0%
AAATAACCAAAGTAGAGCTT+CGG + chr8_2:54616790-54616809 Msa1255670:five_prime_UTR 30.0%
!! ATGTTGAAAGGATCTTGTTT+TGG + chr8_2:54616908-54616927 Msa1255670:intron 30.0%
!!! TCTTGTTTTGGTTGAATAGT+TGG + chr8_2:54616920-54616939 Msa1255670:intron 30.0%
AATACCAGAGGATATATATG+GGG + chr8_2:54617017-54617036 Msa1255670:CDS 30.0%
! GAAAGGTAACATACATGTTT+TGG + chr8_2:54617039-54617058 Msa1255670:intron 30.0%
!! AAACACTTGTTTTCCTTGTT+AGG + chr8_2:54617103-54617122 Msa1255670:intron 30.0%
CATGAAGTTGAATATCTAGA+AGG - chr8_2:54617170-54617189 None:intergenic 30.0%
TCTAGATATTCAACTTCATG+TGG + chr8_2:54617170-54617189 Msa1255670:CDS 30.0%
!!! CACTGGTTCATAATTTTATG+TGG + chr8_2:54617324-54617343 Msa1255670:intron 30.0%
!!! TACTCAATTTTTTTTCCCAG+GGG - chr8_2:54617604-54617623 None:intergenic 30.0%
!!! GATACTCAATTTTTTTTCCC+AGG - chr8_2:54617606-54617625 None:intergenic 30.0%
CAATCTTTACTTCATACTAC+AGG + chr8_2:54617884-54617903 Msa1255670:CDS 30.0%
!! TCTTCATTTTGAGTGAAAAG+CGG - chr8_2:54618144-54618163 None:intergenic 30.0%
TCACTCAAAATGAAGAAACA+TGG + chr8_2:54618148-54618167 Msa1255670:intron 30.0%
CTGAGCAAACATTCAAAAAA+TGG + chr8_2:54618265-54618284 Msa1255670:intron 30.0%
! TGAATATACTCCATTGATTG+AGG + chr8_2:54618880-54618899 Msa1255670:CDS 30.0%
TTCATTTCTTCTTTCATAGG+TGG - chr8_2:54618933-54618952 None:intergenic 30.0%
ACATTTCTGTCAATATGCAA+AGG - chr8_2:54619075-54619094 None:intergenic 30.0%
TCAAGAGAAACCAAATAGAA+AGG - chr8_2:54619134-54619153 None:intergenic 30.0%
GAAAAAGATTACTAGGTCAT+TGG + chr8_2:54619152-54619171 Msa1255670:intron 30.0%
TAAAGGATATCTAAATCCGA+GGG - chr8_2:54619242-54619261 None:intergenic 30.0%
ATAAAGGATATCTAAATCCG+AGG - chr8_2:54619243-54619262 None:intergenic 30.0%
TTTAGATATCCTTTATGCTG+AGG + chr8_2:54619247-54619266 Msa1255670:CDS 30.0%
TTAGATATCCTTTATGCTGA+GGG + chr8_2:54619248-54619267 Msa1255670:CDS 30.0%
ATCTACATGATTCTTTAGCT+AGG + chr8_2:54619351-54619370 Msa1255670:CDS 30.0%
AACCTTTGACATAAACCTAA+GGG - chr8_2:54619474-54619493 None:intergenic 30.0%
! TAACTTGTAAGGCAAGTTTA+AGG + chr8_2:54619495-54619514 Msa1255670:intron 30.0%
AAAGTCTAGAAACTAAGACA+TGG + chr8_2:54619557-54619576 Msa1255670:intron 30.0%
! TGAAGACAAAATTTGGGATA+TGG - chr8_2:54619683-54619702 None:intergenic 30.0%
! TCTTTTGTATTGGAGATAGA+TGG + chr8_2:54620012-54620031 Msa1255670:intron 30.0%
!! TGATTGTTTCTATGAAACAC+AGG - chr8_2:54620208-54620227 None:intergenic 30.0%
ATATGTATTTACAGAGCCAT+AGG - chr8_2:54620363-54620382 None:intergenic 30.0%
!!! AATACATATTTTTTGGGAGG+GGG + chr8_2:54620374-54620393 Msa1255670:intron 30.0%
CTAATTACAATACATGCAAG+AGG + chr8_2:54620472-54620491 Msa1255670:CDS 30.0%
AAACAGATTATAGTCACTCA+AGG - chr8_2:54620563-54620582 None:intergenic 30.0%
! TATAATCTGTTTTCTACCGA+CGG + chr8_2:54620571-54620590 Msa1255670:CDS 30.0%
AAAAGTTGGATGAGTAACAA+TGG - chr8_2:54620647-54620666 None:intergenic 30.0%
ACATAGCAGTTAAGTTTAAG+AGG + chr8_2:54620851-54620870 Msa1255670:CDS 30.0%
GTTGATGCATCACTTAAATA+TGG + chr8_2:54620940-54620959 Msa1255670:CDS 30.0%
TGCATCACTTAAATATGGAA+AGG + chr8_2:54620945-54620964 Msa1255670:CDS 30.0%
CTTGTACATATATGTCAACT+AGG + chr8_2:54621123-54621142 Msa1255670:three_prime_UTR 30.0%
ATTCGATTGATGAGTCGAAA+AGG + chr8_2:54615856-54615875 Msa1255670:five_prime_UTR 35.0%
TTCGATTGATGAGTCGAAAA+GGG + chr8_2:54615857-54615876 Msa1255670:five_prime_UTR 35.0%
! TGGAAAGAGTCTTTCTTTTG+AGG + chr8_2:54616004-54616023 Msa1255670:five_prime_UTR 35.0%
!! GAGTCTTTCTTTTGAGGAAT+TGG + chr8_2:54616010-54616029 Msa1255670:five_prime_UTR 35.0%
AGATTGACACTTGAGATTGA+AGG + chr8_2:54616403-54616422 Msa1255670:intron 35.0%
TGTCAAACTATGACATGTGT+CGG - chr8_2:54616441-54616460 None:intergenic 35.0%
TAGTTTGACATTGACACATC+TGG + chr8_2:54616451-54616470 Msa1255670:intron 35.0%
! GCTTGAAGTTGAGTTTTACT+TGG + chr8_2:54616643-54616662 Msa1255670:intron 35.0%
TGAGGAGTAATAATGCTACA+AGG - chr8_2:54616699-54616718 None:intergenic 35.0%
ATTACTCCTCATCTGAATGT+TGG + chr8_2:54616708-54616727 Msa1255670:five_prime_UTR 35.0%
!!! TGTTTTGGTTGAATAGTTGG+CGG + chr8_2:54616923-54616942 Msa1255670:intron 35.0%
TCTTCATTGACCCAAAAATG+CGG - chr8_2:54616969-54616988 None:intergenic 35.0%
!!! CATTTTTGGGTCAATGAAGA+TGG + chr8_2:54616969-54616988 Msa1255670:CDS 35.0%
! TATTTTTCTGTCCCTCTTCT+TGG - chr8_2:54617001-54617020 None:intergenic 35.0%
GTTGAATATCTAGAAGGAAC+TGG - chr8_2:54617164-54617183 None:intergenic 35.0%
AACATAATCAGGAAACGTTC+TGG - chr8_2:54617219-54617238 None:intergenic 35.0%
TTTCCTGATTATGTTGAGCA+TGG + chr8_2:54617224-54617243 Msa1255670:CDS 35.0%
ATTCCATGCTCAACATAATC+AGG - chr8_2:54617230-54617249 None:intergenic 35.0%
!!! GACAAGCACTATTTTTAAGC+AGG + chr8_2:54617289-54617308 Msa1255670:CDS 35.0%
!!! GCAGGTAATTTTTTAAGCAC+TGG + chr8_2:54617307-54617326 Msa1255670:intron 35.0%
ATCATGTGCATTATCAGTCT+TGG + chr8_2:54617358-54617377 Msa1255670:intron 35.0%
! GGTGCTTTTGTAAAGAATCT+TGG - chr8_2:54617735-54617754 None:intergenic 35.0%
!!! CGTTTTGAAGAAGAAAGTCT+GGG + chr8_2:54617845-54617864 Msa1255670:CDS 35.0%
ATATTATAGTTGGGGTGGAA+GGG - chr8_2:54617931-54617950 None:intergenic 35.0%
TTAGCATATTATAGTTGGGG+TGG - chr8_2:54617936-54617955 None:intergenic 35.0%
! CACACGAATATTTTATCCAG+CGG + chr8_2:54618336-54618355 Msa1255670:intron 35.0%
! AATCAAAGCACTTTCCTACT+GGG - chr8_2:54618428-54618447 None:intergenic 35.0%
! AAATCAAAGCACTTTCCTAC+TGG - chr8_2:54618429-54618448 None:intergenic 35.0%
TTCCATAACTCCTCAATCAA+TGG - chr8_2:54618893-54618912 None:intergenic 35.0%
ATGGAATGATTCAGCCATTA+AGG + chr8_2:54618907-54618926 Msa1255670:CDS 35.0%
AAGAAATAACTGGCAACACT+GGG - chr8_2:54618968-54618987 None:intergenic 35.0%
TAAGAAATAACTGGCAACAC+TGG - chr8_2:54618969-54618988 None:intergenic 35.0%
!! TTGCCAGTTATTTCTTAGAG+CGG + chr8_2:54618972-54618991 Msa1255670:CDS 35.0%
! TTATTTCTTAGAGCGGGTAT+AGG + chr8_2:54618979-54618998 Msa1255670:intron 35.0%
TGCATATTGACAGAAATGTC+AGG + chr8_2:54619076-54619095 Msa1255670:intron 35.0%
ACCTTTGACATAAACCTAAG+GGG - chr8_2:54619473-54619492 None:intergenic 35.0%
CAACCTTTGACATAAACCTA+AGG - chr8_2:54619475-54619494 None:intergenic 35.0%
! GTCAAAGGTTGTAACTTGTA+AGG + chr8_2:54619484-54619503 Msa1255670:intron 35.0%
! GACTTTTCATCATCTTCTGA+CGG - chr8_2:54619543-54619562 None:intergenic 35.0%
GCGGTTTGAAGACAAAATTT+GGG - chr8_2:54619689-54619708 None:intergenic 35.0%
TGCGGTTTGAAGACAAAATT+TGG - chr8_2:54619690-54619709 None:intergenic 35.0%
CTATCTTTGATGTTCTCGTA+TGG - chr8_2:54619750-54619769 None:intergenic 35.0%
GAGATAGATGGCGTAATATT+AGG + chr8_2:54620024-54620043 Msa1255670:intron 35.0%
AGTTAAGGACACAGACTAAT+AGG - chr8_2:54620084-54620103 None:intergenic 35.0%
!! TCTGTGTCCTTAACTAGTTT+TGG + chr8_2:54620089-54620108 Msa1255670:intron 35.0%
GCAAAAGCCAAAACTAGTTA+AGG - chr8_2:54620099-54620118 None:intergenic 35.0%
!! GAATCATTTTTGTAGTCACC+AGG + chr8_2:54620135-54620154 Msa1255670:intron 35.0%
AGTTGCACTTTAATAACACC+TGG - chr8_2:54620156-54620175 None:intergenic 35.0%
TGTGCTAAGAAACAAACCTA+TGG + chr8_2:54620344-54620363 Msa1255670:intron 35.0%
!!! ATACATATTTTTTGGGAGGG+GGG + chr8_2:54620375-54620394 Msa1255670:intron 35.0%
! GTTTAAAGCAGCTCTTCTAA+GGG - chr8_2:54620403-54620422 None:intergenic 35.0%
! AGTTTAAAGCAGCTCTTCTA+AGG - chr8_2:54620404-54620423 None:intergenic 35.0%
CTAGAAATGTTTGAGGATGT+CGG + chr8_2:54620517-54620536 Msa1255670:CDS 35.0%
CAAACAAGATGATATTGAGC+AGG + chr8_2:54620608-54620627 Msa1255670:CDS 35.0%
! AATGCAGTTATTGTTGCTTC+CGG - chr8_2:54620794-54620813 None:intergenic 35.0%
!! AGGCTTTATTCATCTCTTAC+AGG + chr8_2:54620871-54620890 Msa1255670:CDS 35.0%
!! GGCTTTATTCATCTCTTACA+GGG + chr8_2:54620872-54620891 Msa1255670:CDS 35.0%
!! ATGGAAAGGAGATTTTGAAG+TGG + chr8_2:54620959-54620978 Msa1255670:CDS 35.0%
TCATCACTTAGGCTAAAGTT+TGG - chr8_2:54620997-54621016 None:intergenic 35.0%
TCGATTGATGAGTCGAAAAG+GGG + chr8_2:54615858-54615877 Msa1255670:five_prime_UTR 40.0%
!! GTAGTTTGGGAAAGTGTTCT+AGG + chr8_2:54615880-54615899 Msa1255670:five_prime_UTR 40.0%
AGTTGAAGCCTGGGAATTAT+TGG + chr8_2:54616066-54616085 Msa1255670:five_prime_UTR 40.0%
!!! AAGTATCTGGTTTTTGGGGA+AGG + chr8_2:54616096-54616115 Msa1255670:five_prime_UTR 40.0%
CGTCAGTATTTAGCGTCATA+TGG + chr8_2:54616166-54616185 Msa1255670:intron 40.0%
CTACTAGTGTAAGCACTTTG+AGG + chr8_2:54616209-54616228 Msa1255670:intron 40.0%
!! GTAAGCACTTTGAGGTTGTT+TGG + chr8_2:54616217-54616236 Msa1255670:intron 40.0%
!!! TTGGGGTGCTGTGTTTTTTT+AGG + chr8_2:54616662-54616681 Msa1255670:intron 40.0%
!!! GGTGCTGTGTTTTTTTAGGA+AGG + chr8_2:54616666-54616685 Msa1255670:intron 40.0%
TTGCTAGCATCCTGTTTGAT+GGG - chr8_2:54616738-54616757 None:intergenic 40.0%
ATTGCTAGCATCCTGTTTGA+TGG - chr8_2:54616739-54616758 None:intergenic 40.0%
ATCAAACAGGATGCTAGCAA+TGG + chr8_2:54616738-54616757 Msa1255670:five_prime_UTR 40.0%
! GACACTCAGGTTTTCATCAA+TGG + chr8_2:54616762-54616781 Msa1255670:five_prime_UTR 40.0%
!!! GTTTTGGTTGAATAGTTGGC+GGG + chr8_2:54616924-54616943 Msa1255670:intron 40.0%
CTTCATTGACCCAAAAATGC+GGG - chr8_2:54616968-54616987 None:intergenic 40.0%
AGATGGTTCATACCAAGAAG+AGG + chr8_2:54616986-54617005 Msa1255670:CDS 40.0%
GATGGTTCATACCAAGAAGA+GGG + chr8_2:54616987-54617006 Msa1255670:CDS 40.0%
CTTTCCCCATATATATCCTC+TGG - chr8_2:54617024-54617043 None:intergenic 40.0%
CAGAGGATATATATGGGGAA+AGG + chr8_2:54617022-54617041 Msa1255670:CDS 40.0%
!! ACTTGTTTTCCTTGTTAGGC+TGG + chr8_2:54617107-54617126 Msa1255670:intron 40.0%
ATATCTAGAAGGAACTGGCA+GGG - chr8_2:54617159-54617178 None:intergenic 40.0%
AATATCTAGAAGGAACTGGC+AGG - chr8_2:54617160-54617179 None:intergenic 40.0%
! TGGTTTTCTATCCTCCAATG+TGG + chr8_2:54617190-54617209 Msa1255670:CDS 40.0%
AACCACTGTAACCAACTAAG+AGG - chr8_2:54617265-54617284 None:intergenic 40.0%
TTAGTTGGTTACAGTGGTTC+TGG + chr8_2:54617266-54617285 Msa1255670:CDS 40.0%
TAGTTGGTTACAGTGGTTCT+GGG + chr8_2:54617267-54617286 Msa1255670:CDS 40.0%
AATGCTTCTTCAAGTGCTTG+CGG - chr8_2:54617455-54617474 None:intergenic 40.0%
!!! ATTTTTTTTCCCAGGGGAGA+GGG - chr8_2:54617598-54617617 None:intergenic 40.0%
!!! AATTTTTTTTCCCAGGGGAG+AGG - chr8_2:54617599-54617618 None:intergenic 40.0%
! ATAGAAGAGCACAACATAGC+TGG - chr8_2:54617640-54617659 None:intergenic 40.0%
AACGTGACGGTTGTTATGAA+AGG + chr8_2:54617663-54617682 Msa1255670:intron 40.0%
ACCAATGTCTATGCCTATCT+TGG + chr8_2:54617800-54617819 Msa1255670:CDS 40.0%
TATCTTGGCATACTCCTAGA+GGG + chr8_2:54617815-54617834 Msa1255670:CDS 40.0%
!!! GCGTTTTGAAGAAGAAAGTC+TGG + chr8_2:54617844-54617863 Msa1255670:CDS 40.0%
CATATTATAGTTGGGGTGGA+AGG - chr8_2:54617932-54617951 None:intergenic 40.0%
CCATCAGGTCAACAAATAGA+TGG - chr8_2:54618052-54618071 None:intergenic 40.0%
! CCATCTATTTGTTGACCTGA+TGG + chr8_2:54618049-54618068 Msa1255670:intron 40.0%
AGTGTCAGTTGGAAGAAACA+AGG - chr8_2:54618231-54618250 None:intergenic 40.0%
ACAAATCAGTAACTTTCCGC+TGG - chr8_2:54618355-54618374 None:intergenic 40.0%
TTGGTTGTCCCAAAATTGAG+AGG - chr8_2:54618405-54618424 None:intergenic 40.0%
GCTAGTATTATTTGGGTACC+AGG + chr8_2:54618731-54618750 Msa1255670:intron 40.0%
!! CACAAGACTGAAAGCATTCT+CGG + chr8_2:54618796-54618815 Msa1255670:CDS 40.0%
GCTGCTGAAAACAATGGTTT+CGG + chr8_2:54618823-54618842 Msa1255670:CDS 40.0%
CTGCTGAAAACAATGGTTTC+GGG + chr8_2:54618824-54618843 Msa1255670:CDS 40.0%
! CTCCATTGATTGAGGAGTTA+TGG + chr8_2:54618888-54618907 Msa1255670:CDS 40.0%
! TCTTTCATAGGTGGCCTTAA+TGG - chr8_2:54618924-54618943 None:intergenic 40.0%
!! TGCCAGTTATTTCTTAGAGC+GGG + chr8_2:54618973-54618992 Msa1255670:CDS 40.0%
!! TACCCGCTCTAAGAAATAAC+TGG - chr8_2:54618978-54618997 None:intergenic 40.0%
ATTGACAGAAATGTCAGGAG+AGG + chr8_2:54619081-54619100 Msa1255670:intron 40.0%
TTGACAGAAATGTCAGGAGA+GGG + chr8_2:54619082-54619101 Msa1255670:intron 40.0%
AAGTAACTCCCTCAGCATAA+AGG - chr8_2:54619259-54619278 None:intergenic 40.0%
TACAGCAATTGGGTCAATCA+GGG - chr8_2:54619422-54619441 None:intergenic 40.0%
ATACAGCAATTGGGTCAATC+AGG - chr8_2:54619423-54619442 None:intergenic 40.0%
ACCCCTTAGGTTTATGTCAA+AGG + chr8_2:54619469-54619488 Msa1255670:intron 40.0%
! AGGCAAGTTTAAGGCAAGAA+TGG + chr8_2:54619504-54619523 Msa1255670:intron 40.0%
TGTTAGACACGCAAAGACAT+TGG - chr8_2:54619602-54619621 None:intergenic 40.0%
TTGATGTTCTCGTATGGCTT+TGG - chr8_2:54619744-54619763 None:intergenic 40.0%
CTTGTGTTTAGCAGACATAG+TGG + chr8_2:54619903-54619922 Msa1255670:intron 40.0%
! TGTTTAGCAGACATAGTGGA+GGG + chr8_2:54619907-54619926 Msa1255670:intron 40.0%
TATGCGTGCATGTGATTCAA+TGG - chr8_2:54619942-54619961 None:intergenic 40.0%
!!! TACATATTTTTTGGGAGGGG+GGG + chr8_2:54620376-54620395 Msa1255670:intron 40.0%
!! GTAGCTTTGATCTCTTTGCT+TGG + chr8_2:54620435-54620454 Msa1255670:intron 40.0%
CAAGTGGCTAGAAATGTTTG+AGG + chr8_2:54620510-54620529 Msa1255670:CDS 40.0%
AATGTTTGAGGATGTCGGAT+TGG + chr8_2:54620522-54620541 Msa1255670:CDS 40.0%
! ATGCAGTTATTGTTGCTTCC+GGG - chr8_2:54620793-54620812 None:intergenic 40.0%
GCAAAACTTGTATGTGTCCT+TGG + chr8_2:54620894-54620913 Msa1255670:CDS 40.0%
TTGTATGTGTCCTTGGTGAA+GGG + chr8_2:54620901-54620920 Msa1255670:CDS 40.0%
AGTGATGCATCAACACTATC+AGG - chr8_2:54620934-54620953 None:intergenic 40.0%
TATGCATCGAGTCATCACTT+AGG - chr8_2:54621008-54621027 None:intergenic 40.0%
GCATATTACAACTCGATAGC+CGG - chr8_2:54621178-54621197 None:intergenic 40.0%
TGAGTCGAAAAGGGGTAGTT+TGG + chr8_2:54615866-54615885 Msa1255670:five_prime_UTR 45.0%
GAGTCGAAAAGGGGTAGTTT+GGG + chr8_2:54615867-54615886 Msa1255670:five_prime_UTR 45.0%
GGAAGTTAGACAGGTGATGA+AGG + chr8_2:54615929-54615948 Msa1255670:five_prime_UTR 45.0%
CTCCTAAGAAGTTGAAGCCT+GGG + chr8_2:54616057-54616076 Msa1255670:five_prime_UTR 45.0%
TTCCCAGGCTTCAACTTCTT+AGG - chr8_2:54616062-54616081 None:intergenic 45.0%
ACTCCTCATCTGAATGTTGG+TGG + chr8_2:54616711-54616730 Msa1255670:five_prime_UTR 45.0%
CAACATCCGAAGCTCTACTT+TGG - chr8_2:54616799-54616818 None:intergenic 45.0%
! TGCTGGTAACCCGCATTTTT+GGG + chr8_2:54616956-54616975 Msa1255670:CDS 45.0%
GAGGGACAGAAAAATACCAG+AGG + chr8_2:54617005-54617024 Msa1255670:CDS 45.0%
AAACGTTCTGGCAACCACAT+TGG - chr8_2:54617207-54617226 None:intergenic 45.0%
GTTCACAAGCTCCTCTTAGT+TGG + chr8_2:54617251-54617270 Msa1255670:CDS 45.0%
CTCCTCTTAGTTGGTTACAG+TGG + chr8_2:54617260-54617279 Msa1255670:CDS 45.0%
GCTACATATGATGCCTGAAC+TGG + chr8_2:54617528-54617547 Msa1255670:intron 45.0%
CAGATTTCAGAAGCCAGTTC+AGG - chr8_2:54617544-54617563 None:intergenic 45.0%
GCTCTTCTATGTCAACGTGA+CGG + chr8_2:54617650-54617669 Msa1255670:intron 45.0%
! ACGTTCATCTTCTGAGAAGG+GGG - chr8_2:54617756-54617775 None:intergenic 45.0%
! CACGTTCATCTTCTGAGAAG+GGG - chr8_2:54617757-54617776 None:intergenic 45.0%
! CCACGTTCATCTTCTGAGAA+GGG - chr8_2:54617758-54617777 None:intergenic 45.0%
! TCCACGTTCATCTTCTGAGA+AGG - chr8_2:54617759-54617778 None:intergenic 45.0%
! GGCATAGACATTGGTCTGAA+TGG - chr8_2:54617795-54617814 None:intergenic 45.0%
GCCAAGATAGGCATAGACAT+TGG - chr8_2:54617804-54617823 None:intergenic 45.0%
! CTCTAGGAGTATGCCAAGAT+AGG - chr8_2:54617816-54617835 None:intergenic 45.0%
CTATCTTGGCATACTCCTAG+AGG + chr8_2:54617814-54617833 Msa1255670:CDS 45.0%
GTTTGCTCAGTAGTGTCAGT+TGG - chr8_2:54618242-54618261 None:intergenic 45.0%
! AAAGCACTTTCCTACTGGGT+TGG - chr8_2:54618424-54618443 None:intergenic 45.0%
!! GACTGAAAGCATTCTCGGAT+TGG + chr8_2:54618801-54618820 Msa1255670:CDS 45.0%
!! GGATTGGCTGCTGAAAACAA+TGG + chr8_2:54618817-54618836 Msa1255670:CDS 45.0%
GTATATTCACGAGTAGCAGC+TGG - chr8_2:54618869-54618888 None:intergenic 45.0%
TGACAGAAATGTCAGGAGAG+GGG + chr8_2:54619083-54619102 Msa1255670:intron 45.0%
AGTTACTTCCTCCAATGGAC+TGG + chr8_2:54619271-54619290 Msa1255670:CDS 45.0%
ATTTCCTCAATCAGCTCCTG+AGG + chr8_2:54619310-54619329 Msa1255670:CDS 45.0%
ACAGCAATTGGGTCAATCAG+GGG - chr8_2:54619421-54619440 None:intergenic 45.0%
!!! CTAGATTTTTCAAGGGCGTG+CGG - chr8_2:54619708-54619727 None:intergenic 45.0%
GTGTTTAGCAGACATAGTGG+AGG + chr8_2:54619906-54619925 Msa1255670:intron 45.0%
CAGCAGAGTGAGTATAGAGA+TGG + chr8_2:54620049-54620068 Msa1255670:intron 45.0%
GATCTCTTTGCTTGGTTCAC+AGG + chr8_2:54620443-54620462 Msa1255670:intron 45.0%
ACAATACATGCAAGAGGGCT+AGG + chr8_2:54620478-54620497 Msa1255670:CDS 45.0%
GGCTAGGAGATAATTGCAAG+TGG + chr8_2:54620494-54620513 Msa1255670:CDS 45.0%
! CTGTTTTCTACCGACGGAAA+TGG + chr8_2:54620577-54620596 Msa1255670:CDS 45.0%
TGTGACACAACCATTTCCGT+CGG - chr8_2:54620590-54620609 None:intergenic 45.0%
!! TTCCACTGACTCAGTGTGAA+TGG + chr8_2:54620731-54620750 Msa1255670:CDS 45.0%
AACCATTCACACTGAGTCAG+TGG - chr8_2:54620736-54620755 None:intergenic 45.0%
GGGCGATTATGGCTAATTAC+TGG - chr8_2:54620772-54620791 None:intergenic 45.0%
GTAATTAGCCATAATCGCCC+CGG + chr8_2:54620772-54620791 Msa1255670:CDS 45.0%
! TGCAGTTATTGTTGCTTCCG+GGG - chr8_2:54620792-54620811 None:intergenic 45.0%
! AAGCAAGCTGACTTATGGAG+GGG - chr8_2:54620825-54620844 None:intergenic 45.0%
! GAAGCAAGCTGACTTATGGA+GGG - chr8_2:54620826-54620845 None:intergenic 45.0%
! ATGGGAAGCAAGCTGACTTA+TGG - chr8_2:54620830-54620849 None:intergenic 45.0%
CTTGTATGTGTCCTTGGTGA+AGG + chr8_2:54620900-54620919 Msa1255670:CDS 45.0%
!!! GGAGATTTTGAAGTGGAACG+AGG + chr8_2:54620966-54620985 Msa1255670:CDS 45.0%
TCGAAGTCATGTGTGTGACT+TGG + chr8_2:54621092-54621111 Msa1255670:three_prime_UTR 45.0%
GTCAACTAGGAGTAGTGACA+CGG + chr8_2:54621136-54621155 Msa1255670:three_prime_UTR 45.0%
ATTACAACTCGATAGCCGGT+GGG - chr8_2:54621174-54621193 None:intergenic 45.0%
TATTACAACTCGATAGCCGG+TGG - chr8_2:54621175-54621194 None:intergenic 45.0%
!!! ACATATATAATATTTTAAAA+CGG - chr8_2:54617997-54618016 None:intergenic 5.0%
CCAGGCTTCAACTTCTTAGG+AGG - chr8_2:54616059-54616078 None:intergenic 50.0%
CCTCCTAAGAAGTTGAAGCC+TGG + chr8_2:54616056-54616075 Msa1255670:five_prime_UTR 50.0%
TCTAGTGCGTGTGTCTGTGT+TGG + chr8_2:54616536-54616555 Msa1255670:intron 50.0%
GGTCCACCAACATTCAGATG+AGG - chr8_2:54616717-54616736 None:intergenic 50.0%
! TGTTGGTGGACCCATCAAAC+AGG + chr8_2:54616725-54616744 Msa1255670:five_prime_UTR 50.0%
TGCTAGCAATGGAGACACTC+AGG + chr8_2:54616749-54616768 Msa1255670:five_prime_UTR 50.0%
AGTAGAGCTTCGGATGTTGC+AGG + chr8_2:54616800-54616819 Msa1255670:exon 50.0%
!! GTGCTGGTAACCCGCATTTT+TGG + chr8_2:54616955-54616974 Msa1255670:CDS 50.0%
AGCTTCGTTCCAGCCTAACA+AGG - chr8_2:54617119-54617138 None:intergenic 50.0%
TAGAAGGAACTGGCAGGGAA+AGG - chr8_2:54617154-54617173 None:intergenic 50.0%
CCCTTCTCAGAAGATGAACG+TGG + chr8_2:54617755-54617774 Msa1255670:CDS 50.0%
TATAGTTGGGGTGGAAGGGA+GGG - chr8_2:54617927-54617946 None:intergenic 50.0%
TTATAGTTGGGGTGGAAGGG+AGG - chr8_2:54617928-54617947 None:intergenic 50.0%
! TTTGGGACAACCAACCCAGT+AGG + chr8_2:54618411-54618430 Msa1255670:intron 50.0%
!! CCATGTTTTCGACTGGTTCC+TGG - chr8_2:54618752-54618771 None:intergenic 50.0%
CCAGGAACCAGTCGAAAACA+TGG + chr8_2:54618749-54618768 Msa1255670:intron 50.0%
! CTTGTCGCCATGTTTTCGAC+TGG - chr8_2:54618759-54618778 None:intergenic 50.0%
GACGACTGACTATGAACCCT+CGG + chr8_2:54619223-54619242 Msa1255670:CDS 50.0%
GAGGGAGTTACTTCCTCCAA+TGG + chr8_2:54619266-54619285 Msa1255670:CDS 50.0%
TACACTAGCCAGTCCATTGG+AGG - chr8_2:54619282-54619301 None:intergenic 50.0%
CTCTACACTAGCCAGTCCAT+TGG - chr8_2:54619285-54619304 None:intergenic 50.0%
GTTTCCTCAGGAGCTGATTG+AGG - chr8_2:54619317-54619336 None:intergenic 50.0%
CAATCAGCTCCTGAGGAAAC+TGG + chr8_2:54619317-54619336 Msa1255670:CDS 50.0%
CTTGAGAAACAGCACCCCTT+AGG + chr8_2:54619456-54619475 Msa1255670:intron 50.0%
! TTAGCAGACATAGTGGAGGG+AGG + chr8_2:54619910-54619929 Msa1255670:intron 50.0%
! GGAAGCAAGCTGACTTATGG+AGG - chr8_2:54620827-54620846 None:intergenic 50.0%
GACAGGTGATGAAGGCTGAG+AGG + chr8_2:54615937-54615956 Msa1255670:five_prime_UTR 55.0%
TTGGCGGGAGTTCAATGTGC+TGG + chr8_2:54616939-54616958 Msa1255670:CDS 55.0%
AGGAACTGGCAGGGAAAGGA+AGG - chr8_2:54617150-54617169 None:intergenic 55.0%
CGTTCTGGCAACCACATTGG+AGG - chr8_2:54617204-54617223 None:intergenic 55.0%
! TTTTCCCAGGGGAGAGGGAT+GGG - chr8_2:54617593-54617612 None:intergenic 55.0%
! TTTTTCCCAGGGGAGAGGGA+TGG - chr8_2:54617594-54617613 None:intergenic 55.0%
CAAAACGCTCACGACCCTCT+AGG - chr8_2:54617832-54617851 None:intergenic 55.0%
TCAGTGTCGCCAGTTTCCTC+AGG - chr8_2:54619329-54619348 None:intergenic 55.0%
! TGTTGCTTCCGGGGCGATTA+TGG - chr8_2:54620783-54620802 None:intergenic 55.0%
TGTGTCCTTGGTGAAGGGAC+TGG + chr8_2:54620906-54620925 Msa1255670:CDS 55.0%
AGGTTCCAGTCCCTTCACCA+AGG - chr8_2:54620914-54620933 None:intergenic 55.0%
! CGGAAGCACATTCTTCCCAC+CGG + chr8_2:54621156-54621175 Msa1255670:three_prime_UTR 55.0%
AACCTCCCATCCCTCTCCCC+TGG + chr8_2:54617585-54617604 Msa1255670:intron 65.0%
ACCTCCCATCCCTCTCCCCT+GGG + chr8_2:54617586-54617605 Msa1255670:intron 65.0%
TCCCAGGGGAGAGGGATGGG+AGG - chr8_2:54617590-54617609 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 54615848 54621199 54615848 ID=Msa1255670;Name=Msa1255670
chr8_2 mRNA 54615848 54621199 54615848 ID=Msa1255670-mRNA-1;Parent=Msa1255670;Name=Msa1255670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=399|1|0.75|1|0.85|0.87|8|137|492
chr8_2 exon 54615848 54616117 54615848 ID=Msa1255670-mRNA-1:exon:16930;Parent=Msa1255670-mRNA-1
chr8_2 exon 54616684 54616821 54616684 ID=Msa1255670-mRNA-1:exon:16931;Parent=Msa1255670-mRNA-1
chr8_2 exon 54616939 54617043 54616939 ID=Msa1255670-mRNA-1:exon:16932;Parent=Msa1255670-mRNA-1
chr8_2 exon 54617125 54617310 54617125 ID=Msa1255670-mRNA-1:exon:16933;Parent=Msa1255670-mRNA-1
chr8_2 exon 54617731 54617905 54617731 ID=Msa1255670-mRNA-1:exon:16934;Parent=Msa1255670-mRNA-1
chr8_2 exon 54618753 54618994 54618753 ID=Msa1255670-mRNA-1:exon:16935;Parent=Msa1255670-mRNA-1
chr8_2 exon 54619209 54619372 54619209 ID=Msa1255670-mRNA-1:exon:16936;Parent=Msa1255670-mRNA-1
chr8_2 exon 54620465 54621199 54620465 ID=Msa1255670-mRNA-1:exon:16937;Parent=Msa1255670-mRNA-1
chr8_2 five_prime_UTR 54615848 54616117 54615848 ID=Msa1255670-mRNA-1:five_prime_utr;Parent=Msa1255670-mRNA-1
chr8_2 five_prime_UTR 54616684 54616812 54616684 ID=Msa1255670-mRNA-1:five_prime_utr;Parent=Msa1255670-mRNA-1
chr8_2 CDS 54616813 54616821 54616813 ID=Msa1255670-mRNA-1:cds;Parent=Msa1255670-mRNA-1
chr8_2 CDS 54616939 54617043 54616939 ID=Msa1255670-mRNA-1:cds;Parent=Msa1255670-mRNA-1
chr8_2 CDS 54617125 54617310 54617125 ID=Msa1255670-mRNA-1:cds;Parent=Msa1255670-mRNA-1
chr8_2 CDS 54617731 54617905 54617731 ID=Msa1255670-mRNA-1:cds;Parent=Msa1255670-mRNA-1
chr8_2 CDS 54618753 54618994 54618753 ID=Msa1255670-mRNA-1:cds;Parent=Msa1255670-mRNA-1
chr8_2 CDS 54619209 54619372 54619209 ID=Msa1255670-mRNA-1:cds;Parent=Msa1255670-mRNA-1
chr8_2 CDS 54620465 54621062 54620465 ID=Msa1255670-mRNA-1:cds;Parent=Msa1255670-mRNA-1
chr8_2 three_prime_UTR 54621063 54621199 54621063 ID=Msa1255670-mRNA-1:three_prime_utr;Parent=Msa1255670-mRNA-1
Gene Sequence

>Msa1255670

ATGTTGCAGTTGGCGGGAGTTCAATGTGCTGGTAACCCGCATTTTTGGGTCAATGAAGATGGTTCATACCAAGAAGAGGGACAGAAAAATACCAGAGGATATATATGGGGAAAGGCTGGAACGAAGCTTGTATGCGCCTTCCTTTCCCTGCCAGTTCCTTCTAGATATTCAACTTCATGTGGTTTTCTATCCTCCAATGTGGTTGCCAGAACGTTTCCTGATTATGTTGAGCATGGAATAGTTCACAAGCTCCTCTTAGTTGGTTACAGTGGTTCTGGGACAAGCACTATTTTTAAGCAGGCCAAGATTCTTTACAAAAGCACCCCCTTCTCAGAAGATGAACGTGGAAATATAAAGTTGACCATTCAGACCAATGTCTATGCCTATCTTGGCATACTCCTAGAGGGTCGTGAGCGTTTTGAAGAAGAAAGTCTGGGAAATTTAAAGAAGAGTCAATCTTTACTTCATACTACAGGAACCAGTCGAAAACATGGCGACAAGACAATTTATTCTATTGGCACAAGACTGAAAGCATTCTCGGATTGGCTGCTGAAAACAATGGTTTCGGGCAAGCTTGATGCTATCTTTCCAGCTGCTACTCGTGAATATACTCCATTGATTGAGGAGTTATGGAATGATTCAGCCATTAAGGCCACCTATGAAAGAAGAAATGAAATTGAAATGCTACCCAGTGTTGCCAGTTATTTCTTAGAGCGGGCTGTTCAGATACTGACGACTGACTATGAACCCTCGGATTTAGATATCCTTTATGCTGAGGGAGTTACTTCCTCCAATGGACTGGCTAGTGTAGAGTTTTCATTTCCTCAATCAGCTCCTGAGGAAACTGGCGACACTGAATATCTACATGATTCTTTAGCTAGGTATGAGCTAATTACAATACATGCAAGAGGGCTAGGAGATAATTGCAAGTGGCTAGAAATGTTTGAGGATGTCGGATTGGTCATCTTCTGTGTTTCCTTGAGTGACTATAATCTGTTTTCTACCGACGGAAATGGTTGTGTCACAAACAAGATGATATTGAGCAGGAAACTTTTTGAAACCATTGTTACTCATCCAACTTTTAAGAAAATGGACTTCCTGTTGATTTTAAACAAATTAGACGAGTTTGAGCAGAAAATAGAAAATGTTCCACTGACTCAGTGTGAATGGTTCTCTGATTTTCATCCAGTAATTAGCCATAATCGCCCCGGAAGCAACAATAACTGCATTAACAATAACCCCTCCATAAGTCAGCTTGCTTCCCATTACATAGCAGTTAAGTTTAAGAGGCTTTATTCATCTCTTACAGGGCAAAACTTGTATGTGTCCTTGGTGAAGGGACTGGAACCTGATAGTGTTGATGCATCACTTAAATATGGAAAGGAGATTTTGAAGTGGAACGAGGAGAAACCAAACTTTAGCCTAAGTGATGACTCGATGCATAGCATTGAAGAGAGTTCTTTCTCTATTGATTGCTAG
Protein sequence

>Msa1255670

MLQLAGVQCAGNPHFWVNEDGSYQEEGQKNTRGYIWGKAGTKLVCAFLSLPVPSRYSTSCGFLSSNVVARTFPDYVEHGIVHKLLLVGYSGSGTSTIFKQAKILYKSTPFSEDERGNIKLTIQTNVYAYLGILLEGRERFEEESLGNLKKSQSLLHTTGTSRKHGDKTIYSIGTRLKAFSDWLLKTMVSGKLDAIFPAATREYTPLIEELWNDSAIKATYERRNEIEMLPSVASYFLERAVQILTTDYEPSDLDILYAEGVTSSNGLASVEFSFPQSAPEETGDTEYLHDSLARYELITIHARGLGDNCKWLEMFEDVGLVIFCVSLSDYNLFSTDGNGCVTNKMILSRKLFETIVTHPTFKKMDFLLILNKLDEFEQKIENVPLTQCEWFSDFHPVISHNRPGSNNNCINNNPSISQLASHYIAVKFKRLYSSLTGQNLYVSLVKGLEPDSVDASLKYGKEILKWNEEKPNFSLSDDSMHSIEESSFSIDC*