Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395190 | XP_003591668.1 | 94.944 | 356 | 15 | 2 | 17 | 372 | 17 | 369 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395190 | sp|Q9FLE8|Y5986_ARATH | 43.373 | 166 | 74 | 3 | 226 | 371 | 223 | 388 | 6.20e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395190 | G7I314 | 94.944 | 356 | 15 | 2 | 17 | 372 | 17 | 369 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa1395190 | 0.816217 | 6.196372e-52 | -8.615850e-47 |
| Msa0030370 | Msa1395190 | 0.804299 | 2.308916e-49 | -8.615850e-47 |
| Msa0054690 | Msa1395190 | 0.809795 | 1.585798e-50 | -8.615850e-47 |
| Msa0081570 | Msa1395190 | 0.805285 | 1.436837e-49 | -8.615850e-47 |
| Msa0094780 | Msa1395190 | 0.813874 | 2.051991e-51 | -8.615850e-47 |
| Msa1359690 | Msa1395190 | 0.816097 | 6.592189e-52 | -8.615850e-47 |
| Msa1392580 | Msa1395190 | 0.808525 | 2.967541e-50 | -8.615850e-47 |
| Msa1395190 | Msa1397400 | 0.841733 | 3.971803e-58 | -8.615850e-47 |
| Msa1395190 | Msa1420950 | 0.833497 | 5.154564e-56 | -8.615850e-47 |
| Msa1395190 | Msa1437640 | 0.847825 | 9.050206e-60 | -8.615850e-47 |
| Msa1395190 | Msa1440960 | 0.819658 | 1.034440e-52 | -8.615850e-47 |
| Msa0626450 | Msa1395190 | 0.814789 | 1.288308e-51 | -8.615850e-47 |
| Msa0626490 | Msa1395190 | 0.811601 | 6.453171e-51 | -8.615850e-47 |
| Msa0644410 | Msa1395190 | 0.814977 | 1.170287e-51 | -8.615850e-47 |
| Msa0658640 | Msa1395190 | 0.804054 | 2.596632e-49 | -8.615850e-47 |
| Msa0661150 | Msa1395190 | 0.801499 | 8.746708e-49 | -8.615850e-47 |
| Msa0662240 | Msa1395190 | 0.808120 | 3.620472e-50 | -8.615850e-47 |
| Msa0664600 | Msa1395190 | 0.811827 | 5.761686e-51 | -8.615850e-47 |
| Msa0682050 | Msa1395190 | 0.801586 | 8.395630e-49 | -8.615850e-47 |
| Msa0741220 | Msa1395190 | 0.804539 | 2.057813e-49 | -8.615850e-47 |
| Msa0761670 | Msa1395190 | 0.801345 | 9.409483e-49 | -8.615850e-47 |
| Msa0795870 | Msa1395190 | 0.842985 | 1.850941e-58 | -8.615850e-47 |
| Msa0830130 | Msa1395190 | 0.835361 | 1.754537e-56 | -8.615850e-47 |
| Msa0830460 | Msa1395190 | 0.825682 | 4.102676e-54 | -8.615850e-47 |
| Msa0833650 | Msa1395190 | 0.841713 | 4.021203e-58 | -8.615850e-47 |
| Msa0124280 | Msa1395190 | 0.817602 | 3.028475e-52 | -8.615850e-47 |
| Msa0136650 | Msa1395190 | 0.815354 | 9.651590e-52 | -8.615850e-47 |
| Msa0173730 | Msa1395190 | 0.804297 | 2.310852e-49 | -8.615850e-47 |
| Msa0182190 | Msa1395190 | 0.811537 | 6.662891e-51 | -8.615850e-47 |
| Msa0182240 | Msa1395190 | 0.819516 | 1.114881e-52 | -8.615850e-47 |
| Msa0190570 | Msa1395190 | 0.806488 | 8.028066e-50 | -8.615850e-47 |
| Msa0200050 | Msa1395190 | 0.803846 | 2.868822e-49 | -8.615850e-47 |
| Msa0225100 | Msa1395190 | 0.800483 | 1.410978e-48 | -8.615850e-47 |
| Msa0225860 | Msa1395190 | 0.861260 | 1.162286e-63 | -8.615850e-47 |
| Msa1224930 | Msa1395190 | 0.820673 | 6.058136e-53 | -8.615850e-47 |
| Msa1226520 | Msa1395190 | 0.803375 | 3.592729e-49 | -8.615850e-47 |
| Msa1255670 | Msa1395190 | 0.800857 | 1.183905e-48 | -8.615850e-47 |
| Msa1307630 | Msa1395190 | 0.801318 | 9.528877e-49 | -8.615850e-47 |
| Msa1320670 | Msa1395190 | 0.801061 | 1.075199e-48 | -8.615850e-47 |
| Msa0371270 | Msa1395190 | 0.800376 | 1.483764e-48 | -8.615850e-47 |
| Msa0380620 | Msa1395190 | 0.820202 | 7.770463e-53 | -8.615850e-47 |
| Msa0428370 | Msa1395190 | 0.825728 | 4.000511e-54 | -8.615850e-47 |
| Msa0430260 | Msa1395190 | 0.815236 | 1.025183e-51 | -8.615850e-47 |
| Msa0430300 | Msa1395190 | 0.818108 | 2.327520e-52 | -8.615850e-47 |
| Msa0465530 | Msa1395190 | 0.800455 | 1.429591e-48 | -8.615850e-47 |
| Msa0472950 | Msa1395190 | 0.817020 | 4.093838e-52 | -8.615850e-47 |
| Msa0474730 | Msa1395190 | 0.805196 | 1.500435e-49 | -8.615850e-47 |
| Msa0242590 | Msa1395190 | 0.813805 | 2.124881e-51 | -8.615850e-47 |
| Msa0260510 | Msa1395190 | 0.832248 | 1.053688e-55 | -8.615850e-47 |
| Msa0280790 | Msa1395190 | 0.804100 | 2.540459e-49 | -8.615850e-47 |
| Msa0287740 | Msa1395190 | 0.807737 | 4.367071e-50 | -8.615850e-47 |
| Msa0298470 | Msa1395190 | 0.832366 | 9.849205e-56 | -8.615850e-47 |
| Msa0339650 | Msa1395190 | 0.806825 | 6.815327e-50 | -8.615850e-47 |
| Msa0340500 | Msa1395190 | 0.825738 | 3.980387e-54 | -8.615850e-47 |
| Msa1132840 | Msa1395190 | 0.843531 | 1.323258e-58 | -8.615850e-47 |
| Msa1161680 | Msa1395190 | 0.807379 | 5.202612e-50 | -8.615850e-47 |
| Msa1186020 | Msa1395190 | 0.806911 | 6.536406e-50 | -8.615850e-47 |
| Msa1192570 | Msa1395190 | 0.806200 | 9.233530e-50 | -8.615850e-47 |
| Msa1208950 | Msa1395190 | 0.831190 | 1.921221e-55 | -8.615850e-47 |
| Msa1215870 | Msa1395190 | 0.807771 | 4.295782e-50 | -8.615850e-47 |
| Msa0483100 | Msa1395190 | 0.800198 | 1.612551e-48 | -8.615850e-47 |
| Msa0528570 | Msa1395190 | 0.800775 | 1.230136e-48 | -8.615850e-47 |
| Msa0543660 | Msa1395190 | 0.802727 | 4.891084e-49 | -8.615850e-47 |
| Msa0548470 | Msa1395190 | 0.826885 | 2.121696e-54 | -8.615850e-47 |
| Msa0567170 | Msa1395190 | 0.802186 | 6.321913e-49 | -8.615850e-47 |
| Msa0580370 | Msa1395190 | 0.844432 | 7.588094e-59 | -8.615850e-47 |
| Msa0584420 | Msa1395190 | 0.802617 | 5.152877e-49 | -8.615850e-47 |
| Msa0967380 | Msa1395190 | 0.802619 | 5.148027e-49 | -8.615850e-47 |
| Msa0967870 | Msa1395190 | 0.805727 | 1.161083e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395190 | MtrunA17_Chr1g0196971 | 94.944 | 356 | 15 | 2 | 17 | 372 | 17 | 369 | 0.0 | 656 |
| Msa1395190 | MtrunA17_Chr7g0267591 | 53.374 | 163 | 67 | 2 | 218 | 371 | 116 | 278 | 1.49e-56 | 186 |
| Msa1395190 | MtrunA17_Chr7g0266401 | 43.627 | 204 | 109 | 4 | 170 | 371 | 205 | 404 | 4.64e-48 | 167 |
| Msa1395190 | MtrunA17_Chr5g0437471 | 48.667 | 150 | 75 | 2 | 223 | 371 | 90 | 238 | 3.43e-44 | 153 |
| Msa1395190 | MtrunA17_Chr8g0388481 | 42.938 | 177 | 92 | 3 | 204 | 371 | 191 | 367 | 1.85e-42 | 152 |
| Msa1395190 | MtrunA17_Chr1g0171871 | 44.099 | 161 | 79 | 2 | 222 | 371 | 203 | 363 | 1.11e-40 | 147 |
| Msa1395190 | MtrunA17_Chr3g0083531 | 45.638 | 149 | 79 | 2 | 226 | 372 | 113 | 261 | 3.00e-39 | 141 |
| Msa1395190 | MtrunA17_Chr8g0352771 | 44.737 | 152 | 79 | 2 | 225 | 371 | 103 | 254 | 6.47e-38 | 137 |
| Msa1395190 | MtrunA17_Chr8g0392761 | 45.342 | 161 | 81 | 3 | 218 | 371 | 113 | 273 | 7.71e-38 | 137 |
| Msa1395190 | MtrunA17_Chr3g0105871 | 44.667 | 150 | 80 | 2 | 224 | 371 | 84 | 232 | 1.86e-36 | 132 |
| Msa1395190 | MtrunA17_Chr5g0431071 | 44.295 | 149 | 81 | 2 | 224 | 371 | 106 | 253 | 8.75e-36 | 131 |
| Msa1395190 | MtrunA17_Chr7g0256501 | 42.384 | 151 | 84 | 2 | 224 | 371 | 274 | 424 | 9.29e-36 | 135 |
| Msa1395190 | MtrunA17_Chr3g0113971 | 40.690 | 145 | 84 | 2 | 228 | 371 | 91 | 234 | 1.19e-34 | 127 |
| Msa1395190 | MtrunA17_Chr7g0217121 | 37.838 | 222 | 107 | 6 | 171 | 371 | 220 | 431 | 4.36e-31 | 122 |
| Msa1395190 | MtrunA17_Chr6g0453031 | 33.929 | 224 | 110 | 7 | 172 | 371 | 213 | 422 | 4.81e-27 | 111 |
| Msa1395190 | MtrunA17_Chr3g0089011 | 37.500 | 152 | 75 | 4 | 240 | 371 | 2 | 153 | 1.54e-20 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395190 | AT5G01420.1 | 37.838 | 444 | 159 | 15 | 1 | 371 | 1 | 400 | 1.37e-73 | 234 |
| Msa1395190 | AT5G06470.1 | 50.617 | 162 | 70 | 2 | 218 | 371 | 79 | 238 | 8.17e-57 | 186 |
| Msa1395190 | AT5G03870.1 | 37.346 | 324 | 166 | 9 | 72 | 371 | 73 | 383 | 2.61e-49 | 171 |
| Msa1395190 | AT3G11773.1 | 54.225 | 142 | 64 | 1 | 230 | 371 | 9 | 149 | 3.16e-49 | 163 |
| Msa1395190 | AT4G10630.1 | 47.024 | 168 | 75 | 3 | 218 | 371 | 166 | 333 | 2.58e-48 | 166 |
| Msa1395190 | AT1G64500.1 | 43.195 | 169 | 86 | 3 | 213 | 371 | 197 | 365 | 2.02e-41 | 149 |
| Msa1395190 | AT5G58530.1 | 43.396 | 159 | 79 | 3 | 224 | 372 | 109 | 266 | 1.69e-36 | 134 |
| Msa1395190 | AT5G13810.1 | 44.000 | 150 | 82 | 2 | 224 | 371 | 123 | 272 | 3.14e-36 | 133 |
| Msa1395190 | AT3G11773.2 | 43.312 | 157 | 65 | 2 | 215 | 371 | 67 | 199 | 1.33e-34 | 126 |
| Msa1395190 | AT3G57070.1 | 42.105 | 152 | 84 | 2 | 224 | 371 | 264 | 415 | 2.41e-33 | 129 |
| Msa1395190 | AT2G41330.1 | 45.517 | 145 | 76 | 2 | 230 | 371 | 256 | 400 | 5.21e-33 | 127 |
| Msa1395190 | AT1G32760.1 | 44.118 | 170 | 85 | 4 | 212 | 371 | 144 | 313 | 2.87e-32 | 124 |
| Msa1395190 | AT5G39865.1 | 43.373 | 166 | 74 | 3 | 226 | 371 | 223 | 388 | 6.30e-32 | 124 |
| Msa1395190 | AT3G28850.1 | 42.135 | 178 | 71 | 5 | 226 | 371 | 249 | 426 | 9.60e-29 | 116 |
Find 66 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATGCTTGTGGTGGTTTA+AGG | 0.148710 | tig0021921:-35245 | Msa1395190:CDS |
| TCTGATACATCAATAATTTC+TGG | 0.214591 | tig0021921:+36011 | None:intergenic |
| GTTGTTTCGGTTTCGAAAAT+TGG | 0.250913 | tig0021921:-35894 | Msa1395190:CDS |
| TAATGGTAGCCATAAGATTT+TGG | 0.260789 | tig0021921:-35202 | Msa1395190:CDS |
| TCGAACGCAGCAAGTAGTTT+TGG | 0.302448 | tig0021921:+35708 | None:intergenic |
| GAGCTAATACTGATAGAAAA+AGG | 0.313758 | tig0021921:-35803 | Msa1395190:CDS |
| TTCTACACAACATCGCTTAG+AGG | 0.320109 | tig0021921:-35531 | Msa1395190:CDS |
| TTCTCCATCTAGCCACAATA+TGG | 0.324101 | tig0021921:+35120 | None:intergenic |
| GTTCCAATGGATTGTTCTAA+TGG | 0.327957 | tig0021921:-35273 | Msa1395190:CDS |
| ATCGATGCACAAGGAGTATA+AGG | 0.339180 | tig0021921:-35427 | Msa1395190:CDS |
| GGATGAATTGTGGAGCCTTT+TGG | 0.348687 | tig0021921:-35406 | Msa1395190:CDS |
| AAATGAAGAAGAAATGGATT+TGG | 0.348854 | tig0021921:-35967 | Msa1395190:CDS |
| CGGAGACCGGATTTGAATTC+CGG | 0.349959 | tig0021921:-35744 | Msa1395190:CDS |
| TGAAGAAAATGAAGAAGAAA+TGG | 0.363113 | tig0021921:-35973 | Msa1395190:CDS |
| TCTCGAGAAACAAATGGGTT+TGG | 0.390853 | tig0021921:+36083 | None:intergenic |
| CTTCAGGTAAAATCCATTGA+TGG | 0.409719 | tig0021921:-36146 | Msa1395190:CDS |
| TTTGTTAAGGGAAGATATAT+AGG | 0.419790 | tig0021921:-35357 | Msa1395190:CDS |
| ATATTGAAAGATGAAATCTT+TGG | 0.423944 | tig0021921:+36107 | None:intergenic |
| AATGCCAGAACGTATTCTTC+AGG | 0.424308 | tig0021921:-36162 | Msa1395190:CDS |
| TAGTCACAAAGGTGTTGTTT+CGG | 0.428450 | tig0021921:-35907 | Msa1395190:CDS |
| GAAAAGTTGCGAGAATTTGC+AGG | 0.429540 | tig0021921:-36048 | Msa1395190:CDS |
| TAGTTTGTCGTTTCGGAGAC+CGG | 0.433762 | tig0021921:-35757 | Msa1395190:CDS |
| AAAACTACTTGCTGCGTTCG+AGG | 0.434476 | tig0021921:-35706 | Msa1395190:CDS |
| AGAAGTTGAAGTTGACCCTT+TGG | 0.437150 | tig0021921:-35601 | Msa1395190:CDS |
| TTTCTATCAGTATTAGCTCT+TGG | 0.445564 | tig0021921:+35807 | None:intergenic |
| AGAGTGATAGTTTGTCGTTT+CGG | 0.451538 | tig0021921:-35764 | Msa1395190:CDS |
| GAAGCTCAAATCAATCAAAC+AGG | 0.457778 | tig0021921:-36195 | Msa1395190:CDS |
| TTTACCTGAAGAATACGTTC+TGG | 0.475307 | tig0021921:+36158 | None:intergenic |
| TGTTTGTTGTGTAATGAGAA+TGG | 0.484610 | tig0021921:-35156 | Msa1395190:CDS |
| AAAATCTGCATACCCATCAA+TGG | 0.498345 | tig0021921:+36133 | None:intergenic |
| ACATCAATAATTTCTGGTTG+TGG | 0.503951 | tig0021921:+36017 | None:intergenic |
| TGAGGAAGAGTTTACAAAGG+TGG | 0.505075 | tig0021921:-35652 | Msa1395190:CDS |
| AATTCTTGAAGGGGTTCCAA+TGG | 0.506549 | tig0021921:-35286 | Msa1395190:CDS |
| GTGTAATGAGAATGGATTGA+TGG | 0.517662 | tig0021921:-35148 | Msa1395190:CDS |
| AGTTGAAGAAAATTCTTGAA+GGG | 0.524425 | tig0021921:-35296 | Msa1395190:CDS |
| AAGTTGAAGAAAATTCTTGA+AGG | 0.526961 | tig0021921:-35297 | Msa1395190:CDS |
| GCACAACTTTCTCACCCAAA+AGG | 0.528869 | tig0021921:+35391 | None:intergenic |
| TTCAGGTAAAATCCATTGAT+GGG | 0.528869 | tig0021921:-36145 | Msa1395190:CDS |
| AAGCTACCGGAATTCAAATC+CGG | 0.531010 | tig0021921:+35738 | None:intergenic |
| AAACTATCACTCTCAGAAAG+AGG | 0.531340 | tig0021921:+35774 | None:intergenic |
| GTTGAAGAAAATTCTTGAAG+GGG | 0.541357 | tig0021921:-35295 | Msa1395190:CDS |
| GTGAGAAAGTTGTGCCTCCA+AGG | 0.543640 | tig0021921:-35383 | Msa1395190:CDS |
| TCTCTTCAAATAACGCCAAA+GGG | 0.545226 | tig0021921:+35586 | None:intergenic |
| AAGTGTCCACCAGGTGGTGA+TGG | 0.545637 | tig0021921:-35564 | Msa1395190:CDS |
| TTCTCTTCAAATAACGCCAA+AGG | 0.551664 | tig0021921:+35585 | None:intergenic |
| TGCGTTCGAGGAAGCTGTGA+AGG | 0.562144 | tig0021921:-35694 | Msa1395190:CDS |
| AATGGACCTTGTGATGCTTG+TGG | 0.579467 | tig0021921:-35255 | Msa1395190:CDS |
| GGTCCATTAGAACAATCCAT+TGG | 0.585251 | tig0021921:+35270 | None:intergenic |
| TTGATGGTGTGTCCATATTG+TGG | 0.585754 | tig0021921:-35132 | Msa1395190:CDS |
| TAAGGCTTTGTATCTCGAGA+GGG | 0.594658 | tig0021921:-35454 | Msa1395190:CDS |
| AACAGAGTCAAAACAGAGTG+AGG | 0.596412 | tig0021921:-35859 | Msa1395190:CDS |
| GGACCTTGTGATGCTTGTGG+TGG | 0.596799 | tig0021921:-35252 | Msa1395190:CDS |
| TTAAGGCTTTGTATCTCGAG+AGG | 0.597422 | tig0021921:-35455 | Msa1395190:CDS |
| AAAGAGAATATTAGTCACAA+AGG | 0.597862 | tig0021921:-35918 | Msa1395190:CDS |
| AACTATCACTCTCAGAAAGA+GGG | 0.607495 | tig0021921:+35775 | None:intergenic |
| ATCACAGTACCATCACCACC+TGG | 0.624770 | tig0021921:+35555 | None:intergenic |
| TTTGAAGAGAAGTGTCCACC+AGG | 0.629966 | tig0021921:-35573 | Msa1395190:CDS |
| AGGAGTATAAGGATGAATTG+TGG | 0.635001 | tig0021921:-35416 | Msa1395190:CDS |
| TTAGCTCTTGGTAACAGTGG+TGG | 0.637058 | tig0021921:+35819 | None:intergenic |
| AGTTGAGGAAGAGTTTACAA+AGG | 0.642245 | tig0021921:-35655 | Msa1395190:CDS |
| GTATTAGCTCTTGGTAACAG+TGG | 0.650696 | tig0021921:+35816 | None:intergenic |
| AAACCACCACAAGCATCACA+AGG | 0.679920 | tig0021921:+35249 | None:intergenic |
| ACAGTACCATCACCACCTGG+TGG | 0.680584 | tig0021921:+35558 | None:intergenic |
| GAGGGATATATCGATGCACA+AGG | 0.688067 | tig0021921:-35436 | Msa1395190:CDS |
| AGGAAGCTGTGAAGGAACAG+AGG | 0.688483 | tig0021921:-35686 | Msa1395190:CDS |
| GAAGAGAAGTGTCCACCAGG+TGG | 0.706764 | tig0021921:-35570 | Msa1395190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGAAAGATGAAATCTT+TGG | + | tig0021921:35248-35267 | None:intergenic | 20.0% |
| !!! | GTTTCTTTTACAAAGTTTTA+AGG | - | tig0021921:35880-35899 | Msa1395190:CDS | 20.0% |
| !! | ATATTGAAAGATGAAATCTT+TGG | + | tig0021921:35248-35267 | None:intergenic | 20.0% |
| !!! | GTTTCTTTTACAAAGTTTTA+AGG | - | tig0021921:35880-35899 | Msa1395190:CDS | 20.0% |
| ! | TCTGATACATCAATAATTTC+TGG | + | tig0021921:35344-35363 | None:intergenic | 25.0% |
| ! | TGAAGAAAATGAAGAAGAAA+TGG | - | tig0021921:35379-35398 | Msa1395190:CDS | 25.0% |
| !! | AAATGAAGAAGAAATGGATT+TGG | - | tig0021921:35385-35404 | Msa1395190:CDS | 25.0% |
| ! | AAAGAGAATATTAGTCACAA+AGG | - | tig0021921:35434-35453 | Msa1395190:CDS | 25.0% |
| !!! | GTAAAAGAAACCGAATTTTT+TGG | + | tig0021921:35871-35890 | None:intergenic | 25.0% |
| ! | TTTGTTAAGGGAAGATATAT+AGG | - | tig0021921:35995-36014 | Msa1395190:CDS | 25.0% |
| ! | AAGTTGAAGAAAATTCTTGA+AGG | - | tig0021921:36055-36074 | Msa1395190:CDS | 25.0% |
| ! | AGTTGAAGAAAATTCTTGAA+GGG | - | tig0021921:36056-36075 | Msa1395190:CDS | 25.0% |
| ! | TCTGATACATCAATAATTTC+TGG | + | tig0021921:35344-35363 | None:intergenic | 25.0% |
| ! | TGAAGAAAATGAAGAAGAAA+TGG | - | tig0021921:35379-35398 | Msa1395190:CDS | 25.0% |
| !! | AAATGAAGAAGAAATGGATT+TGG | - | tig0021921:35385-35404 | Msa1395190:CDS | 25.0% |
| ! | AAAGAGAATATTAGTCACAA+AGG | - | tig0021921:35434-35453 | Msa1395190:CDS | 25.0% |
| !!! | GTAAAAGAAACCGAATTTTT+TGG | + | tig0021921:35871-35890 | None:intergenic | 25.0% |
| ! | TTTGTTAAGGGAAGATATAT+AGG | - | tig0021921:35995-36014 | Msa1395190:CDS | 25.0% |
| ! | AAGTTGAAGAAAATTCTTGA+AGG | - | tig0021921:36055-36074 | Msa1395190:CDS | 25.0% |
| ! | AGTTGAAGAAAATTCTTGAA+GGG | - | tig0021921:36056-36075 | Msa1395190:CDS | 25.0% |
| TTCAGGTAAAATCCATTGAT+GGG | - | tig0021921:35207-35226 | Msa1395190:CDS | 30.0% | |
| ! | CATTTTCTCGAGAAACAAAT+GGG | + | tig0021921:35277-35296 | None:intergenic | 30.0% |
| ! | TCATTTTCTCGAGAAACAAA+TGG | + | tig0021921:35278-35297 | None:intergenic | 30.0% |
| !! | ACATCAATAATTTCTGGTTG+TGG | + | tig0021921:35338-35357 | None:intergenic | 30.0% |
| ! | TTTCTATCAGTATTAGCTCT+TGG | + | tig0021921:35548-35567 | None:intergenic | 30.0% |
| GAGCTAATACTGATAGAAAA+AGG | - | tig0021921:35549-35568 | Msa1395190:CDS | 30.0% | |
| GTTGAAGAAAATTCTTGAAG+GGG | - | tig0021921:36057-36076 | Msa1395190:CDS | 30.0% | |
| !! | GTGATGTGTTTTAAGTGTAA+TGG | - | tig0021921:36133-36152 | Msa1395190:CDS | 30.0% |
| ! | TAATGGTAGCCATAAGATTT+TGG | - | tig0021921:36150-36169 | Msa1395190:CDS | 30.0% |
| !! | TGTTTGTTGTGTAATGAGAA+TGG | - | tig0021921:36196-36215 | Msa1395190:CDS | 30.0% |
| TTCAGGTAAAATCCATTGAT+GGG | - | tig0021921:35207-35226 | Msa1395190:CDS | 30.0% | |
| ! | CATTTTCTCGAGAAACAAAT+GGG | + | tig0021921:35277-35296 | None:intergenic | 30.0% |
| ! | TCATTTTCTCGAGAAACAAA+TGG | + | tig0021921:35278-35297 | None:intergenic | 30.0% |
| !! | ACATCAATAATTTCTGGTTG+TGG | + | tig0021921:35338-35357 | None:intergenic | 30.0% |
| ! | TTTCTATCAGTATTAGCTCT+TGG | + | tig0021921:35548-35567 | None:intergenic | 30.0% |
| GAGCTAATACTGATAGAAAA+AGG | - | tig0021921:35549-35568 | Msa1395190:CDS | 30.0% | |
| GTTGAAGAAAATTCTTGAAG+GGG | - | tig0021921:36057-36076 | Msa1395190:CDS | 30.0% | |
| !! | GTGATGTGTTTTAAGTGTAA+TGG | - | tig0021921:36133-36152 | Msa1395190:CDS | 30.0% |
| ! | TAATGGTAGCCATAAGATTT+TGG | - | tig0021921:36150-36169 | Msa1395190:CDS | 30.0% |
| !! | TGTTTGTTGTGTAATGAGAA+TGG | - | tig0021921:36196-36215 | Msa1395190:CDS | 30.0% |
| GAAGCTCAAATCAATCAAAC+AGG | - | tig0021921:35157-35176 | Msa1395190:CDS | 35.0% | |
| TTTACCTGAAGAATACGTTC+TGG | + | tig0021921:35197-35216 | None:intergenic | 35.0% | |
| CTTCAGGTAAAATCCATTGA+TGG | - | tig0021921:35206-35225 | Msa1395190:CDS | 35.0% | |
| AAAATCTGCATACCCATCAA+TGG | + | tig0021921:35222-35241 | None:intergenic | 35.0% | |
| !! | TAGTCACAAAGGTGTTGTTT+CGG | - | tig0021921:35445-35464 | Msa1395190:CDS | 35.0% |
| ! | GTTGTTTCGGTTTCGAAAAT+TGG | - | tig0021921:35458-35477 | Msa1395190:CDS | 35.0% |
| AACTATCACTCTCAGAAAGA+GGG | + | tig0021921:35580-35599 | None:intergenic | 35.0% | |
| AAACTATCACTCTCAGAAAG+AGG | + | tig0021921:35581-35600 | None:intergenic | 35.0% | |
| ! | AGAGTGATAGTTTGTCGTTT+CGG | - | tig0021921:35588-35607 | Msa1395190:CDS | 35.0% |
| ! | TTTTGGATCAAACAAGCTAC+CGG | + | tig0021921:35630-35649 | None:intergenic | 35.0% |
| AGTTGAGGAAGAGTTTACAA+AGG | - | tig0021921:35697-35716 | Msa1395190:CDS | 35.0% | |
| TCTCTTCAAATAACGCCAAA+GGG | + | tig0021921:35769-35788 | None:intergenic | 35.0% | |
| TTCTCTTCAAATAACGCCAA+AGG | + | tig0021921:35770-35789 | None:intergenic | 35.0% | |
| !!! | AATTTTTTGGCAGTCTTCGA+AGG | + | tig0021921:35858-35877 | None:intergenic | 35.0% |
| TCGAAGACTGCCAAAAAATT+CGG | - | tig0021921:35858-35877 | Msa1395190:CDS | 35.0% | |
| ! | AGGAGTATAAGGATGAATTG+TGG | - | tig0021921:35936-35955 | Msa1395190:CDS | 35.0% |
| !!! | GTTTTGAGTTTGCATGAACA+AGG | - | tig0021921:36031-36050 | Msa1395190:CDS | 35.0% |
| !! | GTTCCAATGGATTGTTCTAA+TGG | - | tig0021921:36079-36098 | Msa1395190:CDS | 35.0% |
| ! | CCTTTTCAGCCAAAATCTTA+TGG | + | tig0021921:36162-36181 | None:intergenic | 35.0% |
| !!! | CCATAAGATTTTGGCTGAAA+AGG | - | tig0021921:36159-36178 | Msa1395190:CDS | 35.0% |
| !! | GTGTAATGAGAATGGATTGA+TGG | - | tig0021921:36204-36223 | Msa1395190:CDS | 35.0% |
| GAAGCTCAAATCAATCAAAC+AGG | - | tig0021921:35157-35176 | Msa1395190:CDS | 35.0% | |
| TTTACCTGAAGAATACGTTC+TGG | + | tig0021921:35197-35216 | None:intergenic | 35.0% | |
| CTTCAGGTAAAATCCATTGA+TGG | - | tig0021921:35206-35225 | Msa1395190:CDS | 35.0% | |
| AAAATCTGCATACCCATCAA+TGG | + | tig0021921:35222-35241 | None:intergenic | 35.0% | |
| !! | TAGTCACAAAGGTGTTGTTT+CGG | - | tig0021921:35445-35464 | Msa1395190:CDS | 35.0% |
| ! | GTTGTTTCGGTTTCGAAAAT+TGG | - | tig0021921:35458-35477 | Msa1395190:CDS | 35.0% |
| AACTATCACTCTCAGAAAGA+GGG | + | tig0021921:35580-35599 | None:intergenic | 35.0% | |
| AAACTATCACTCTCAGAAAG+AGG | + | tig0021921:35581-35600 | None:intergenic | 35.0% | |
| ! | AGAGTGATAGTTTGTCGTTT+CGG | - | tig0021921:35588-35607 | Msa1395190:CDS | 35.0% |
| ! | TTTTGGATCAAACAAGCTAC+CGG | + | tig0021921:35630-35649 | None:intergenic | 35.0% |
| AGTTGAGGAAGAGTTTACAA+AGG | - | tig0021921:35697-35716 | Msa1395190:CDS | 35.0% | |
| TCTCTTCAAATAACGCCAAA+GGG | + | tig0021921:35769-35788 | None:intergenic | 35.0% | |
| TTCTCTTCAAATAACGCCAA+AGG | + | tig0021921:35770-35789 | None:intergenic | 35.0% | |
| !!! | AATTTTTTGGCAGTCTTCGA+AGG | + | tig0021921:35858-35877 | None:intergenic | 35.0% |
| TCGAAGACTGCCAAAAAATT+CGG | - | tig0021921:35858-35877 | Msa1395190:CDS | 35.0% | |
| ! | AGGAGTATAAGGATGAATTG+TGG | - | tig0021921:35936-35955 | Msa1395190:CDS | 35.0% |
| !!! | GTTTTGAGTTTGCATGAACA+AGG | - | tig0021921:36031-36050 | Msa1395190:CDS | 35.0% |
| !! | GTTCCAATGGATTGTTCTAA+TGG | - | tig0021921:36079-36098 | Msa1395190:CDS | 35.0% |
| ! | CCTTTTCAGCCAAAATCTTA+TGG | + | tig0021921:36162-36181 | None:intergenic | 35.0% |
| !!! | CCATAAGATTTTGGCTGAAA+AGG | - | tig0021921:36159-36178 | Msa1395190:CDS | 35.0% |
| !! | GTGTAATGAGAATGGATTGA+TGG | - | tig0021921:36204-36223 | Msa1395190:CDS | 35.0% |
| AATGCCAGAACGTATTCTTC+AGG | - | tig0021921:35190-35209 | Msa1395190:CDS | 40.0% | |
| ! | TCTCGAGAAACAAATGGGTT+TGG | + | tig0021921:35272-35291 | None:intergenic | 40.0% |
| GAAAAGTTGCGAGAATTTGC+AGG | - | tig0021921:35304-35323 | Msa1395190:CDS | 40.0% | |
| AACAGAGTCAAAACAGAGTG+AGG | - | tig0021921:35493-35512 | Msa1395190:CDS | 40.0% | |
| ! | GTATTAGCTCTTGGTAACAG+TGG | + | tig0021921:35539-35558 | None:intergenic | 40.0% |
| AAGCTACCGGAATTCAAATC+CGG | + | tig0021921:35617-35636 | None:intergenic | 40.0% | |
| ACAGAGGAAAAACAGAGTTG+AGG | - | tig0021921:35682-35701 | Msa1395190:CDS | 40.0% | |
| TGAGGAAGAGTTTACAAAGG+TGG | - | tig0021921:35700-35719 | Msa1395190:CDS | 40.0% | |
| AGAAGTTGAAGTTGACCCTT+TGG | - | tig0021921:35751-35770 | Msa1395190:CDS | 40.0% | |
| TTCTACACAACATCGCTTAG+AGG | - | tig0021921:35821-35840 | Msa1395190:CDS | 40.0% | |
| ! | TTAAGGCTTTGTATCTCGAG+AGG | - | tig0021921:35897-35916 | Msa1395190:CDS | 40.0% |
| ! | TAAGGCTTTGTATCTCGAGA+GGG | - | tig0021921:35898-35917 | Msa1395190:CDS | 40.0% |
| ! | ATCGATGCACAAGGAGTATA+AGG | - | tig0021921:35925-35944 | Msa1395190:CDS | 40.0% |
| ! | GATGAATTGTGGAGCCTTTT+GGG | - | tig0021921:35947-35966 | Msa1395190:CDS | 40.0% |
| ! | CCTCCAAGGCTTTTTGTTAA+GGG | - | tig0021921:35983-36002 | Msa1395190:CDS | 40.0% |
| CTTCCCTTAACAAAAAGCCT+TGG | + | tig0021921:35989-36008 | None:intergenic | 40.0% | |
| AATTCTTGAAGGGGTTCCAA+TGG | - | tig0021921:36066-36085 | Msa1395190:CDS | 40.0% | |
| GGTCCATTAGAACAATCCAT+TGG | + | tig0021921:36085-36104 | None:intergenic | 40.0% | |
| !! | TTGATGGTGTGTCCATATTG+TGG | - | tig0021921:36220-36239 | Msa1395190:CDS | 40.0% |
| AATGCCAGAACGTATTCTTC+AGG | - | tig0021921:35190-35209 | Msa1395190:CDS | 40.0% | |
| ! | TCTCGAGAAACAAATGGGTT+TGG | + | tig0021921:35272-35291 | None:intergenic | 40.0% |
| GAAAAGTTGCGAGAATTTGC+AGG | - | tig0021921:35304-35323 | Msa1395190:CDS | 40.0% | |
| AACAGAGTCAAAACAGAGTG+AGG | - | tig0021921:35493-35512 | Msa1395190:CDS | 40.0% | |
| ! | GTATTAGCTCTTGGTAACAG+TGG | + | tig0021921:35539-35558 | None:intergenic | 40.0% |
| AAGCTACCGGAATTCAAATC+CGG | + | tig0021921:35617-35636 | None:intergenic | 40.0% | |
| ACAGAGGAAAAACAGAGTTG+AGG | - | tig0021921:35682-35701 | Msa1395190:CDS | 40.0% | |
| TGAGGAAGAGTTTACAAAGG+TGG | - | tig0021921:35700-35719 | Msa1395190:CDS | 40.0% | |
| AGAAGTTGAAGTTGACCCTT+TGG | - | tig0021921:35751-35770 | Msa1395190:CDS | 40.0% | |
| TTCTACACAACATCGCTTAG+AGG | - | tig0021921:35821-35840 | Msa1395190:CDS | 40.0% | |
| ! | TTAAGGCTTTGTATCTCGAG+AGG | - | tig0021921:35897-35916 | Msa1395190:CDS | 40.0% |
| ! | TAAGGCTTTGTATCTCGAGA+GGG | - | tig0021921:35898-35917 | Msa1395190:CDS | 40.0% |
| ! | ATCGATGCACAAGGAGTATA+AGG | - | tig0021921:35925-35944 | Msa1395190:CDS | 40.0% |
| ! | GATGAATTGTGGAGCCTTTT+GGG | - | tig0021921:35947-35966 | Msa1395190:CDS | 40.0% |
| ! | CCTCCAAGGCTTTTTGTTAA+GGG | - | tig0021921:35983-36002 | Msa1395190:CDS | 40.0% |
| CTTCCCTTAACAAAAAGCCT+TGG | + | tig0021921:35989-36008 | None:intergenic | 40.0% | |
| AATTCTTGAAGGGGTTCCAA+TGG | - | tig0021921:36066-36085 | Msa1395190:CDS | 40.0% | |
| GGTCCATTAGAACAATCCAT+TGG | + | tig0021921:36085-36104 | None:intergenic | 40.0% | |
| !! | TTGATGGTGTGTCCATATTG+TGG | - | tig0021921:36220-36239 | Msa1395190:CDS | 40.0% |
| ! | TTAGCTCTTGGTAACAGTGG+TGG | + | tig0021921:35536-35555 | None:intergenic | 45.0% |
| ! | TAGTTTGTCGTTTCGGAGAC+CGG | - | tig0021921:35595-35614 | Msa1395190:CDS | 45.0% |
| ! | TCGAACGCAGCAAGTAGTTT+TGG | + | tig0021921:35647-35666 | None:intergenic | 45.0% |
| ! | AAAACTACTTGCTGCGTTCG+AGG | - | tig0021921:35646-35665 | Msa1395190:CDS | 45.0% |
| !! | TTTGAAGAGAAGTGTCCACC+AGG | - | tig0021921:35779-35798 | Msa1395190:CDS | 45.0% |
| GAGGGATATATCGATGCACA+AGG | - | tig0021921:35916-35935 | Msa1395190:CDS | 45.0% | |
| ! | GGATGAATTGTGGAGCCTTT+TGG | - | tig0021921:35946-35965 | Msa1395190:CDS | 45.0% |
| GCACAACTTTCTCACCCAAA+AGG | + | tig0021921:35964-35983 | None:intergenic | 45.0% | |
| ! | GCCTCCAAGGCTTTTTGTTA+AGG | - | tig0021921:35982-36001 | Msa1395190:CDS | 45.0% |
| CCCTTAACAAAAAGCCTTGG+AGG | + | tig0021921:35986-36005 | None:intergenic | 45.0% | |
| AATGGACCTTGTGATGCTTG+TGG | - | tig0021921:36097-36116 | Msa1395190:CDS | 45.0% | |
| AAACCACCACAAGCATCACA+AGG | + | tig0021921:36106-36125 | None:intergenic | 45.0% | |
| GTGATGCTTGTGGTGGTTTA+AGG | - | tig0021921:36107-36126 | Msa1395190:CDS | 45.0% | |
| ! | TTAGCTCTTGGTAACAGTGG+TGG | + | tig0021921:35536-35555 | None:intergenic | 45.0% |
| ! | TAGTTTGTCGTTTCGGAGAC+CGG | - | tig0021921:35595-35614 | Msa1395190:CDS | 45.0% |
| ! | TCGAACGCAGCAAGTAGTTT+TGG | + | tig0021921:35647-35666 | None:intergenic | 45.0% |
| ! | AAAACTACTTGCTGCGTTCG+AGG | - | tig0021921:35646-35665 | Msa1395190:CDS | 45.0% |
| !! | TTTGAAGAGAAGTGTCCACC+AGG | - | tig0021921:35779-35798 | Msa1395190:CDS | 45.0% |
| GAGGGATATATCGATGCACA+AGG | - | tig0021921:35916-35935 | Msa1395190:CDS | 45.0% | |
| ! | GGATGAATTGTGGAGCCTTT+TGG | - | tig0021921:35946-35965 | Msa1395190:CDS | 45.0% |
| GCACAACTTTCTCACCCAAA+AGG | + | tig0021921:35964-35983 | None:intergenic | 45.0% | |
| ! | GCCTCCAAGGCTTTTTGTTA+AGG | - | tig0021921:35982-36001 | Msa1395190:CDS | 45.0% |
| CCCTTAACAAAAAGCCTTGG+AGG | + | tig0021921:35986-36005 | None:intergenic | 45.0% | |
| AATGGACCTTGTGATGCTTG+TGG | - | tig0021921:36097-36116 | Msa1395190:CDS | 45.0% | |
| AAACCACCACAAGCATCACA+AGG | + | tig0021921:36106-36125 | None:intergenic | 45.0% | |
| GTGATGCTTGTGGTGGTTTA+AGG | - | tig0021921:36107-36126 | Msa1395190:CDS | 45.0% | |
| CGGAGACCGGATTTGAATTC+CGG | - | tig0021921:35608-35627 | Msa1395190:CDS | 50.0% | |
| AGGAAGCTGTGAAGGAACAG+AGG | - | tig0021921:35666-35685 | Msa1395190:CDS | 50.0% | |
| ATCACAGTACCATCACCACC+TGG | + | tig0021921:35800-35819 | None:intergenic | 50.0% | |
| GTGAGAAAGTTGTGCCTCCA+AGG | - | tig0021921:35969-35988 | Msa1395190:CDS | 50.0% | |
| CGGAGACCGGATTTGAATTC+CGG | - | tig0021921:35608-35627 | Msa1395190:CDS | 50.0% | |
| AGGAAGCTGTGAAGGAACAG+AGG | - | tig0021921:35666-35685 | Msa1395190:CDS | 50.0% | |
| ATCACAGTACCATCACCACC+TGG | + | tig0021921:35800-35819 | None:intergenic | 50.0% | |
| GTGAGAAAGTTGTGCCTCCA+AGG | - | tig0021921:35969-35988 | Msa1395190:CDS | 50.0% | |
| TGCGTTCGAGGAAGCTGTGA+AGG | - | tig0021921:35658-35677 | Msa1395190:CDS | 55.0% | |
| !! | GAAGAGAAGTGTCCACCAGG+TGG | - | tig0021921:35782-35801 | Msa1395190:CDS | 55.0% |
| AAGTGTCCACCAGGTGGTGA+TGG | - | tig0021921:35788-35807 | Msa1395190:CDS | 55.0% | |
| ACAGTACCATCACCACCTGG+TGG | + | tig0021921:35797-35816 | None:intergenic | 55.0% | |
| GGACCTTGTGATGCTTGTGG+TGG | - | tig0021921:36100-36119 | Msa1395190:CDS | 55.0% | |
| TGCGTTCGAGGAAGCTGTGA+AGG | - | tig0021921:35658-35677 | Msa1395190:CDS | 55.0% | |
| !! | GAAGAGAAGTGTCCACCAGG+TGG | - | tig0021921:35782-35801 | Msa1395190:CDS | 55.0% |
| AAGTGTCCACCAGGTGGTGA+TGG | - | tig0021921:35788-35807 | Msa1395190:CDS | 55.0% | |
| ACAGTACCATCACCACCTGG+TGG | + | tig0021921:35797-35816 | None:intergenic | 55.0% | |
| GGACCTTGTGATGCTTGTGG+TGG | - | tig0021921:36100-36119 | Msa1395190:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021921 | gene | 35128 | 36246 | 35128 | ID=Msa1395190;Name=Msa1395190 |
| tig0021921 | mRNA | 35128 | 36246 | 35128 | ID=Msa1395190-mRNA-1;Parent=Msa1395190;Name=Msa1395190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|372 |
| tig0021921 | exon | 35128 | 36246 | 35128 | ID=Msa1395190-mRNA-1:exon:14773;Parent=Msa1395190-mRNA-1 |
| tig0021921 | CDS | 35128 | 36246 | 35128 | ID=Msa1395190-mRNA-1:cds;Parent=Msa1395190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
