AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1263430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263430 MtrunA17_Chr4g0075261 85.621 153 11 1 1 142 1 153 4.10e-62 205
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 193 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACTCGTATGTTCTTTAA+AGG 0.110692 8_2:+66641066 Msa1263430:three_prime_UTR
TTCTCTAGCTTTGTGTTTCT+TGG 0.148326 8_2:-66642769 None:intergenic
CTCGCAGTATGCTGAAAATT+TGG 0.155349 8_2:+66640325 Msa1263430:three_prime_UTR
CCATGTTCTAAAACCTGATA+TGG 0.202757 8_2:+66641275 Msa1263430:three_prime_UTR
TTTGAGGCAGCATGCTTCTT+TGG 0.209357 8_2:-66638921 None:intergenic
AGAACATCACGAACAATAAT+TGG 0.212049 8_2:-66640465 None:intergenic
AAGAAAAGTATTATCAATTA+TGG 0.214358 8_2:+66643274 Msa1263430:three_prime_UTR
TCTGGATGCGCAAAAGCTTT+TGG 0.237412 8_2:+66638648 Msa1263430:CDS
CAAAGCTCATAGGAACAATT+TGG 0.255616 8_2:-66640021 None:intergenic
TCATGCACTGATGACATTTC+CGG 0.257622 8_2:-66639200 None:intergenic
CAGAGAACATATAGAAAATA+AGG 0.299885 8_2:+66642019 Msa1263430:three_prime_UTR
TCGGTGATCCTCCAGGTTGC+TGG 0.309818 8_2:+66643074 Msa1263430:three_prime_UTR
TGTCGCAAGGTCGACCATTT+AGG 0.315353 8_2:-66641995 None:intergenic
GAAGTTCCAATATGTGAATA+GGG 0.316073 8_2:+66640098 Msa1263430:three_prime_UTR
TGACAAATTTGTTTCAGATA+TGG 0.324144 8_2:-66639701 None:intergenic
ACTTCTTCTATAGACATATC+AGG 0.326397 8_2:-66639418 None:intergenic
AGGGCTGATGTATGCCTAAA+TGG 0.327833 8_2:+66641981 Msa1263430:three_prime_UTR
TGATTGCCTGTATTTCCTTT+TGG 0.333565 8_2:-66643305 None:intergenic
ATGTCATCAGTGCATGAAAA+AGG 0.335195 8_2:+66639206 Msa1263430:CDS
AAGTTTCTGTTTCTTCTTTG+AGG 0.339318 8_2:-66638937 None:intergenic
AAGAAGTTGAAGGAGGAGTT+TGG 0.343772 8_2:+66642409 Msa1263430:three_prime_UTR
CATGCACTGATGACATTTCC+GGG 0.344655 8_2:-66639199 None:intergenic
GCGTTCAAAAGGAACAATTA+AGG 0.347282 8_2:+66639492 Msa1263430:three_prime_UTR
TGAAGTTCCAATATGTGAAT+AGG 0.348367 8_2:+66640097 Msa1263430:three_prime_UTR
AATAAATTCTTCACAATGTC+GGG 0.349503 8_2:-66641181 None:intergenic
AGAAGGAAAAGGAAATACTA+TGG 0.362427 8_2:+66638731 Msa1263430:CDS
CATAGCCCCTATTCACATAT+TGG 0.366484 8_2:-66640104 None:intergenic
TCTCTAGCTTTGTGTTTCTT+GGG 0.369110 8_2:-66642768 None:intergenic
ATACAGTGTCCTTGTGTTTG+TGG 0.373523 8_2:+66643332 Msa1263430:three_prime_UTR
GGTATTAGAGTGCAACAATA+TGG 0.378136 8_2:+66642043 Msa1263430:three_prime_UTR
GAAAACACTCGAAAGAATTC+AGG 0.382065 8_2:+66642225 Msa1263430:three_prime_UTR
CATTATAATACCTGCTCAAC+CGG 0.384038 8_2:-66642263 None:intergenic
AACAATTCAGTAAAGCTTCT+AGG 0.385507 8_2:-66643002 None:intergenic
GAAAATGAAACAATGGTAAC+AGG 0.395384 8_2:+66642143 Msa1263430:three_prime_UTR
GTGCCCTGTGGGATATATTT+CGG 0.395741 8_2:+66642168 Msa1263430:three_prime_UTR
TCTCTTCTTAGATGCTAGAT+TGG 0.395903 8_2:-66638892 None:intergenic
CTGGGAGTGTAAACAGCGTT+CGG 0.400054 8_2:+66643093 Msa1263430:three_prime_UTR
TGTGTTTGTGGTTATTTAGA+AGG 0.400941 8_2:+66643344 Msa1263430:three_prime_UTR
TTAATAATACCTCCGCTGTA+TGG 0.402466 8_2:-66641878 None:intergenic
GAGGATATGTTGAAGTTCTC+TGG 0.404767 8_2:+66638630 Msa1263430:CDS
TCTGTGTGCTTCTTTCAAAT+TGG 0.411095 8_2:-66641925 None:intergenic
AAAAGGGCATAAAGATGTTC+TGG 0.411429 8_2:+66638851 Msa1263430:CDS
TTGTCACTACAGAGACTTTG+TGG 0.411737 8_2:-66639863 None:intergenic
TCGCAGTATGCTGAAAATTT+GGG 0.419890 8_2:+66640326 Msa1263430:three_prime_UTR
CGGAGGTATTATTAACTGAT+AGG 0.429669 8_2:+66641886 Msa1263430:three_prime_UTR
TAGTTGTGTCCCAAAAGAAA+TGG 0.431073 8_2:+66640227 Msa1263430:three_prime_UTR
CTCTTCTTAGATGCTAGATT+GGG 0.431195 8_2:-66638891 None:intergenic
CATACCGATACAAATTCAAA+AGG 0.431375 8_2:+66638834 Msa1263430:CDS
AGAGAGGACACTGAAAAGTT+AGG 0.433154 8_2:+66642191 Msa1263430:three_prime_UTR
ACATTTGAGGCAAAGCTCAT+AGG 0.433228 8_2:-66640031 None:intergenic
CCAGCCCGAGGATCAGTATA+CGG 0.441774 8_2:-66641222 None:intergenic
TCCTTAGTCGGTGATCCTCC+AGG 0.443269 8_2:+66643067 Msa1263430:three_prime_UTR
AGGCATACATCAGCCCTCTC+TGG 0.443538 8_2:-66641975 None:intergenic
TGTTGATTCTACAGTAAGAA+TGG 0.445850 8_2:+66638566 None:intergenic
CAAGCAACATTCAGCCAGTC+AGG 0.447609 8_2:-66643025 None:intergenic
TTCATGCCAAAAGGAAATAC+AGG 0.454483 8_2:+66643299 Msa1263430:three_prime_UTR
GTATTTCTTTGCAACATTTG+AGG 0.457251 8_2:-66640044 None:intergenic
AAAGCTCATAGGAACAATTT+GGG 0.457327 8_2:-66640020 None:intergenic
TTGGAACTTCATCTCAGCTC+GGG 0.458986 8_2:-66640085 None:intergenic
AATGTTTGCCTGCGTTCAAA+AGG 0.459522 8_2:+66639481 Msa1263430:three_prime_UTR
TTCCGAAAACATTGGACAAA+TGG 0.462884 8_2:+66640438 Msa1263430:three_prime_UTR
AGTTGTGTCCCAAAAGAAAT+GGG 0.463161 8_2:+66640228 Msa1263430:three_prime_UTR
AACATGGGACAGGTCTGAGC+TGG 0.463529 8_2:+66640490 Msa1263430:three_prime_UTR
GTCTTTGACAGCTTGATCAA+TGG 0.468451 8_2:-66642980 None:intergenic
CTGGATGCCCACATCAAGTC+AGG 0.469410 8_2:+66642563 Msa1263430:three_prime_UTR
GGATCAGTATACGGTTGAAA+TGG 0.473452 8_2:-66641213 None:intergenic
GATCTTCAAATTTATCAGAA+GGG 0.473985 8_2:-66641152 None:intergenic
ACAAAGAGCAGGAGCAGAGC+TGG 0.474771 8_2:+66639020 Msa1263430:CDS
AAATACTATGGGATGTTTGA+AGG 0.476643 8_2:+66638743 Msa1263430:CDS
GTTCTTTAAAGGTTATATAG+AGG 0.476754 8_2:+66641077 Msa1263430:three_prime_UTR
TGGGAGTGTAAACAGCGTTC+GGG 0.479231 8_2:+66643094 Msa1263430:three_prime_UTR
GTGTGGTGGTAATGAGAAAT+CGG 0.481094 8_2:+66638704 Msa1263430:CDS
TGATTTGACTGTTCTTGTCT+AGG 0.483352 8_2:-66638600 None:intergenic
GGGTTGTGGTAGTTCTCTGT+TGG 0.483953 8_2:+66640251 Msa1263430:three_prime_UTR
GAGGCAGTATTTATTCCTGC+TGG 0.484620 8_2:+66642544 Msa1263430:three_prime_UTR
TAAAATTTAACATTGACAAA+AGG 0.484754 8_2:-66643182 None:intergenic
CGGTGATCCTCCAGGTTGCT+GGG 0.486711 8_2:+66643075 Msa1263430:three_prime_UTR
GTGACAAGGAACGTGTCTAT+TGG 0.486752 8_2:+66639879 Msa1263430:three_prime_UTR
ACCTGGAGGATCACCGACTA+AGG 0.491786 8_2:-66643068 None:intergenic
TCGGGCTGGAACTCTCAATC+TGG 0.493514 8_2:+66641236 Msa1263430:three_prime_UTR
GGATTAAAGAAGAACTTGGC+AGG 0.496045 8_2:+66641322 Msa1263430:three_prime_UTR
TTCTTTAAAGGTTATATAGA+GGG 0.499890 8_2:+66641078 Msa1263430:three_prime_UTR
TTATTGTTCACCGGTTGAGC+AGG 0.500773 8_2:+66642253 Msa1263430:three_prime_UTR
AAATCGGAACCAGAAGGAAA+AGG 0.500939 8_2:+66638720 Msa1263430:CDS
CTGAGGCGCATTCTCCCACA+TGG 0.504365 8_2:+66640276 Msa1263430:three_prime_UTR
ACATCAAGTCAGGAATCTTA+AGG 0.504379 8_2:+66642573 Msa1263430:three_prime_UTR
CAGGCATACTTATTGTTCAC+CGG 0.508030 8_2:+66642244 Msa1263430:three_prime_UTR
GAAGAACATATAGTAATCTC+TGG 0.510135 8_2:+66641100 Msa1263430:three_prime_UTR
AAATTGAACAAACTACTCTT+CGG 0.511155 8_2:+66640349 Msa1263430:three_prime_UTR
TTTACTGAATTGTTCCTGAC+TGG 0.511371 8_2:+66643011 Msa1263430:three_prime_UTR
ACATGGGTGGATGTCTGCCT+TGG 0.513331 8_2:+66640293 Msa1263430:three_prime_UTR
GGAGCACAAGAAGAAGTTGA+AGG 0.513811 8_2:+66642399 Msa1263430:three_prime_UTR
AGGTCTGAGCTGGGAGCCGA+TGG 0.514364 8_2:+66640500 Msa1263430:three_prime_UTR
TAATAATACCTCCGCTGTAT+GGG 0.515560 8_2:-66641877 None:intergenic
ATTATGGTATTCATGCCAAA+AGG 0.517551 8_2:+66643290 Msa1263430:three_prime_UTR
AGATCTTCAAATTTATCAGA+AGG 0.521629 8_2:-66641153 None:intergenic
ACTTGATGTGGGCATCCAGC+AGG 0.524603 8_2:-66642559 None:intergenic
GTTCGTGATGTTCTAAAACA+TGG 0.525158 8_2:+66640474 Msa1263430:three_prime_UTR
CTCTCCGAAATATATCCCAC+AGG 0.525312 8_2:-66642172 None:intergenic
TTCAACCGTATACTGATCCT+CGG 0.526738 8_2:+66641217 Msa1263430:three_prime_UTR
AGTTTGAATGCTTCATTGAG+AGG 0.529173 8_2:+66643131 Msa1263430:three_prime_UTR
GAGTGTAATGCCAGGAGTGA+TGG 0.530231 8_2:+66640198 Msa1263430:three_prime_UTR
TTCGTGATGTTCTAAAACAT+GGG 0.530753 8_2:+66640475 Msa1263430:three_prime_UTR
ATCTTCAAATTTATCAGAAG+GGG 0.535676 8_2:-66641151 None:intergenic
CTACTTTCAGACATCTAACA+TGG 0.537773 8_2:+66639622 Msa1263430:intron
TGTGTTTCTTGGGAAGCTGA+CGG 0.538542 8_2:-66642758 None:intergenic
ATCTTTCACAATGTGTCTGA+GGG 0.539751 8_2:+66642095 Msa1263430:three_prime_UTR
TTCTTCTTAAGACAAAGAGC+AGG 0.540103 8_2:+66639009 Msa1263430:CDS
GAAGAAGATGTATCGAGCTA+TGG 0.550506 8_2:+66640375 Msa1263430:three_prime_UTR
TATGGGATTAAAGAAGAACT+TGG 0.552658 8_2:+66641318 Msa1263430:three_prime_UTR
TTAAGATTCCTGACTTGATG+TGG 0.553851 8_2:-66642571 None:intergenic
AAATCACAAGACACTGGTAG+AGG 0.557418 8_2:-66640147 None:intergenic
ATATGTTCTCTGTTGTCGCA+AGG 0.559696 8_2:-66642008 None:intergenic
CTCCACTGATTTCGATAGGA+CGG 0.560809 8_2:-66642070 None:intergenic
GAATAAATTCTTCACAATGT+CGG 0.560919 8_2:-66641182 None:intergenic
CTAGCATCTAAGAAGAGAGA+TGG 0.561973 8_2:+66638897 Msa1263430:CDS
ATTGGAACTTCATCTCAGCT+CGG 0.562205 8_2:-66640086 None:intergenic
GAAGGAAAAGGAAATACTAT+GGG 0.562668 8_2:+66638732 Msa1263430:CDS
TGTTGCTCTTCCGAAAACAT+TGG 0.563196 8_2:+66640430 Msa1263430:three_prime_UTR
GTATGCGATGCATCAATCAA+TGG 0.564613 8_2:+66639274 Msa1263430:three_prime_UTR
AATTTGGGCAGATTCGATGA+AGG 0.564967 8_2:-66640005 None:intergenic
AGATGCTGAAGCTAAAAGAC+TGG 0.565379 8_2:+66641127 Msa1263430:three_prime_UTR
TCAACCGTATACTGATCCTC+GGG 0.565860 8_2:+66641218 Msa1263430:three_prime_UTR
ACTAACACTTCCATCACTCC+TGG 0.566645 8_2:-66640208 None:intergenic
CGATTGCATGGCTAATTGTG+AGG 0.570429 8_2:+66640593 Msa1263430:three_prime_UTR
ACTGCGAGCTTTGTCTTCCA+AGG 0.570985 8_2:-66640310 None:intergenic
AGTGAAGGCCATCGATTGCA+TGG 0.575237 8_2:+66640581 Msa1263430:three_prime_UTR
AAATTTGTTTCAGATATGGA+AGG 0.578176 8_2:-66639697 None:intergenic
CATGTTCTAAAACCTGATAT+GGG 0.578332 8_2:+66641276 Msa1263430:three_prime_UTR
ACAATTAGCCATGCAATCGA+TGG 0.580189 8_2:-66640589 None:intergenic
TGTTTACACTCCCAGCAACC+TGG 0.582518 8_2:-66643085 None:intergenic
ATACCGATACAAATTCAAAA+GGG 0.582996 8_2:+66638835 Msa1263430:CDS
AGGGGCTATGATTATATGCA+TGG 0.585379 8_2:+66640117 Msa1263430:three_prime_UTR
GTAGTTCTCTGTTGGAGCTG+AGG 0.590028 8_2:+66640259 Msa1263430:three_prime_UTR
TTCTACAGAAAATGAAACAA+TGG 0.590271 8_2:+66642136 Msa1263430:three_prime_UTR
TATCTTTCACAATGTGTCTG+AGG 0.590309 8_2:+66642094 Msa1263430:three_prime_UTR
GATGTTCTAAAACATGGGAC+AGG 0.591339 8_2:+66640480 Msa1263430:three_prime_UTR
GGCGCATTCTCCCACATGGG+TGG 0.591623 8_2:+66640280 Msa1263430:three_prime_UTR
TATCTACCGAGTGTAATGCC+AGG 0.591693 8_2:+66640190 Msa1263430:three_prime_UTR
ACATGGGACAGGTCTGAGCT+GGG 0.594876 8_2:+66640491 Msa1263430:three_prime_UTR
ATATCTCCACTGATTTCGAT+AGG 0.597449 8_2:-66642074 None:intergenic
GAGAACACCGTGCTCCAGAG+AGG 0.597552 8_2:+66641961 Msa1263430:three_prime_UTR
AGAGAACTTCAACATATCCT+CGG 0.600419 8_2:-66638628 None:intergenic
AATGCTCGCCACATGACCAT+CGG 0.603094 8_2:-66640516 None:intergenic
TAAGATTCCTGACTTGATGT+GGG 0.603534 8_2:-66642570 None:intergenic
ATTTAGAAGGATGCAAGAGG+TGG 0.604972 8_2:+66643357 Msa1263430:three_prime_UTR
AGAACACCGTGCTCCAGAGA+GGG 0.606805 8_2:+66641962 Msa1263430:three_prime_UTR
TGTTGCAAAGAAATACGTGA+TGG 0.607475 8_2:+66640051 Msa1263430:three_prime_UTR
CTTCTTCTATAGACATATCA+GGG 0.611493 8_2:-66639417 None:intergenic
TACTATGGGATGTTTGAAGG+AGG 0.613119 8_2:+66638746 Msa1263430:CDS
ATCACTCCTGGCATTACACT+CGG 0.613940 8_2:-66640196 None:intergenic
GATTAAAGAAGAACTTGGCA+GGG 0.616962 8_2:+66641323 Msa1263430:three_prime_UTR
GGTAACAGGTAGTGCCCTGT+GGG 0.617284 8_2:+66642157 Msa1263430:three_prime_UTR
TTGTGTCCCAAAAGAAATGG+GGG 0.617770 8_2:+66640230 Msa1263430:three_prime_UTR
GTCTCTAAATCACAAGACAC+TGG 0.619904 8_2:-66640153 None:intergenic
GCTGAAGAATTTCACGAGTG+TGG 0.620552 8_2:+66638687 Msa1263430:CDS
TTGTCATGAACAAAGTGTAG+AGG 0.621423 8_2:+66639718 Msa1263430:three_prime_UTR
GCGAGCATTGTGTGATAATG+TGG 0.622160 8_2:+66640530 Msa1263430:three_prime_UTR
CATCAGCCCTCTCTGGAGCA+CGG 0.622167 8_2:-66641968 None:intergenic
AATGAGAAATCGGAACCAGA+AGG 0.622864 8_2:+66638714 Msa1263430:CDS
GTGGGATATATTTCGGAGAG+AGG 0.626190 8_2:+66642175 Msa1263430:three_prime_UTR
AAGTTCCAATATGTGAATAG+GGG 0.632079 8_2:+66640099 Msa1263430:three_prime_UTR
ATTAAAGAAGAACTTGGCAG+GGG 0.632276 8_2:+66641324 Msa1263430:three_prime_UTR
ACAGTCAAATCAACATTCCG+AGG 0.632981 8_2:+66638611 Msa1263430:CDS
CTTTCACAATGTGTCTGAGG+GGG 0.633363 8_2:+66642097 Msa1263430:three_prime_UTR
TGAGGCGCATTCTCCCACAT+GGG 0.633374 8_2:+66640277 Msa1263430:three_prime_UTR
TCTTCAAATTTATCAGAAGG+GGG 0.635024 8_2:-66641150 None:intergenic
AACCGTCCTATCGAAATCAG+TGG 0.635864 8_2:+66642068 Msa1263430:three_prime_UTR
GTTATTTAGAAGGATGCAAG+AGG 0.638290 8_2:+66643354 Msa1263430:three_prime_UTR
TGGTAACAGGTAGTGCCCTG+TGG 0.639563 8_2:+66642156 Msa1263430:three_prime_UTR
AATCACAAGACACTGGTAGA+GGG 0.646755 8_2:-66640146 None:intergenic
AGGGTGTTCAACAAAATACC+CGG 0.650067 8_2:+66639181 Msa1263430:intron
GCACAAGAAGAAGTTGAAGG+AGG 0.651643 8_2:+66642402 Msa1263430:three_prime_UTR
GAAGAATTTCACGAGTGTGG+TGG 0.651936 8_2:+66638690 Msa1263430:CDS
AGATTGAGAGTTCCAGCCCG+AGG 0.651977 8_2:-66641234 None:intergenic
GTTGTGTCCCAAAAGAAATG+GGG 0.654890 8_2:+66640229 Msa1263430:three_prime_UTR
AGGCAGACATCCACCCATGT+GGG 0.655161 8_2:-66640290 None:intergenic
TCTAAATAACCACAAACACA+AGG 0.655248 8_2:-66643341 None:intergenic
AAGGCAGACATCCACCCATG+TGG 0.656813 8_2:-66640291 None:intergenic
AACCTTGCAGTCGTGCACAA+AGG 0.657614 8_2:+66642674 Msa1263430:intron
GCTGGGAGCCGATGGTCATG+TGG 0.662730 8_2:+66640508 Msa1263430:three_prime_UTR
TGGAACTTCATCTCAGCTCG+GGG 0.672240 8_2:-66640084 None:intergenic
ACAAAGTCTCTGTAGTGACA+AGG 0.677477 8_2:+66639865 Msa1263430:three_prime_UTR
TGATTCTACAGTAAGAATGG+AGG 0.678009 8_2:+66638569 None:intergenic
ATAAATTCTTCACAATGTCG+GGG 0.685345 8_2:-66641180 None:intergenic
AGAACATATAGAAAATAAGG+AGG 0.686564 8_2:+66642022 Msa1263430:three_prime_UTR
TCACTGTGATATGTCAGATG+CGG 0.691771 8_2:+66641365 Msa1263430:three_prime_UTR
TCTTTCACAATGTGTCTGAG+GGG 0.694238 8_2:+66642096 Msa1263430:three_prime_UTR
AGCTAGAGAAGATAAACTTG+AGG 0.698411 8_2:+66642782 Msa1263430:three_prime_UTR
TCTCCGAAATATATCCCACA+GGG 0.704301 8_2:-66642171 None:intergenic
TTACACTCCCAGCAACCTGG+AGG 0.737160 8_2:-66643082 None:intergenic
TGTGTCCCAAAAGAAATGGG+GGG 0.738710 8_2:+66640231 Msa1263430:three_prime_UTR
GGCTATGATTATATGCATGG+TGG 0.762734 8_2:+66640120 Msa1263430:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACAAAAACAAAAAATAT+AGG - chr8_2:66639781-66639800 None:intergenic 10.0%
!!! TACTATATAGTTTAATATTT+TGG + chr8_2:66639944-66639963 Msa1263430:intron 10.0%
!!! ATTTTTTATACATATACTTA+GGG - chr8_2:66640787-66640806 None:intergenic 10.0%
!!! TATTTTTTATACATATACTT+AGG - chr8_2:66640788-66640807 None:intergenic 10.0%
!! ATTAAAATCAACTTTCATAA+AGG - chr8_2:66639112-66639131 None:intergenic 15.0%
!!! TTATGAAAGTTGATTTTAAT+TGG + chr8_2:66639112-66639131 Msa1263430:intron 15.0%
!!! TGTTGCTAATTTTTTAATAT+AGG + chr8_2:66639392-66639411 Msa1263430:intron 15.0%
!!! ATAGTTTAATATTTTGGTTT+TGG + chr8_2:66639950-66639969 Msa1263430:intron 15.0%
!!! TTTTTTATACATATACTTAG+GGG - chr8_2:66640786-66640805 None:intergenic 15.0%
!!! GTTCTTATTTGTAATTTTTA+AGG + chr8_2:66642302-66642321 Msa1263430:intron 15.0%
!! AACAATTATATGAAATAGTA+TGG - chr8_2:66642440-66642459 None:intergenic 15.0%
!! TAAAATTTAACATTGACAAA+AGG - chr8_2:66643185-66643204 None:intergenic 15.0%
!!! AAGAAAAGTATTATCAATTA+TGG + chr8_2:66643274-66643293 Msa1263430:three_prime_UTR 15.0%
!!! TGCAATTTTTAATGCAAAAT+GGG - chr8_2:66639456-66639475 None:intergenic 20.0%
!!! TTGCAATTTTTAATGCAAAA+TGG - chr8_2:66639457-66639476 None:intergenic 20.0%
!! AAAAGAATTTGAAGAGATAT+TGG - chr8_2:66639597-66639616 None:intergenic 20.0%
!!! TTTTTATACATATACTTAGG+GGG - chr8_2:66640785-66640804 None:intergenic 20.0%
!!! ATACTATTTAGTTTGTTGAT+TGG + chr8_2:66640849-66640868 Msa1263430:intron 20.0%
!!! TACTATTTAGTTTGTTGATT+GGG + chr8_2:66640850-66640869 Msa1263430:intron 20.0%
!! CATTTATACAAATAAAGATC+TGG - chr8_2:66640905-66640924 None:intergenic 20.0%
!! TTTAAGAAGAAATACTAAGA+TGG - chr8_2:66640957-66640976 None:intergenic 20.0%
!!! TTCTTTAAAGGTTATATAGA+GGG + chr8_2:66641078-66641097 Msa1263430:three_prime_UTR 20.0%
!! CAAAAACATATATTGCTTAT+GGG + chr8_2:66641301-66641320 Msa1263430:three_prime_UTR 20.0%
!! TTTATGGAGAAAATATTCAA+TGG - chr8_2:66641452-66641471 None:intergenic 20.0%
!! GTCTAAAAGGAATTATTATA+TGG + chr8_2:66641592-66641611 Msa1263430:intron 20.0%
!! AAAAGGAATTATTATATGGT+TGG + chr8_2:66641596-66641615 Msa1263430:intron 20.0%
!! TTAGTTATTAATGTGAATCT+CGG + chr8_2:66642479-66642498 Msa1263430:intron 20.0%
!!! ATATTTTCATTTTCTACATG+TGG + chr8_2:66642898-66642917 Msa1263430:intron 20.0%
!!! AAAATTTTAGTATGCTTGTT+TGG + chr8_2:66643396-66643415 Msa1263430:three_prime_UTR 20.0%
!!! TTTTGGAAATTCAAAGAGAA+AGG + chr8_2:66638665-66638684 Msa1263430:CDS 25.0%
!! ACAGTTTCACAAGAAAATTT+TGG + chr8_2:66638771-66638790 Msa1263430:intron 25.0%
! ATACCGATACAAATTCAAAA+GGG + chr8_2:66638835-66638854 Msa1263430:CDS 25.0%
!! ATTTTTGAACATTTAGTGCA+AGG - chr8_2:66639249-66639268 None:intergenic 25.0%
! TCATCACAGAATTTCATTAA+GGG - chr8_2:66639540-66639559 None:intergenic 25.0%
! TTCATCACAGAATTTCATTA+AGG - chr8_2:66639541-66639560 None:intergenic 25.0%
! AATTTGAAGAGATATTGGTA+TGG - chr8_2:66639592-66639611 None:intergenic 25.0%
!!! ATACTGAGCTTTTTCATAAT+TGG - chr8_2:66639654-66639673 None:intergenic 25.0%
!! AAATTTGTTTCAGATATGGA+AGG - chr8_2:66639700-66639719 None:intergenic 25.0%
!! TGACAAATTTGTTTCAGATA+TGG - chr8_2:66639704-66639723 None:intergenic 25.0%
! GATATAGAAGCAAAAATACA+AGG + chr8_2:66639743-66639762 Msa1263430:three_prime_UTR 25.0%
! CAATAATAATCTCTTCTGTT+AGG + chr8_2:66639818-66639837 Msa1263430:intron 25.0%
! AAATTGAACAAACTACTCTT+CGG + chr8_2:66640349-66640368 Msa1263430:three_prime_UTR 25.0%
! TCAAAAAGCAGTTTAAAAGA+AGG + chr8_2:66640405-66640424 Msa1263430:three_prime_UTR 25.0%
! CAAAAAGCAGTTTAAAAGAA+GGG + chr8_2:66640406-66640425 Msa1263430:three_prime_UTR 25.0%
! ACTTTCAAACTGTAATAAAG+GGG - chr8_2:66640625-66640644 None:intergenic 25.0%
! GACTTTCAAACTGTAATAAA+GGG - chr8_2:66640626-66640645 None:intergenic 25.0%
! AGACTTTCAAACTGTAATAA+AGG - chr8_2:66640627-66640646 None:intergenic 25.0%
! ACTACAAATTTAAACATGCA+TGG - chr8_2:66640662-66640681 None:intergenic 25.0%
!!! TGTGAATTTCTAGTTTTTCA+AGG + chr8_2:66640727-66640746 Msa1263430:intron 25.0%
!! TTTTATACATATACTTAGGG+GGG - chr8_2:66640784-66640803 None:intergenic 25.0%
! AGACATTGCATATAATACAA+TGG - chr8_2:66640881-66640900 None:intergenic 25.0%
! AATACTCGTATGTTCTTTAA+AGG + chr8_2:66641066-66641085 Msa1263430:three_prime_UTR 25.0%
!! GTTCTTTAAAGGTTATATAG+AGG + chr8_2:66641077-66641096 Msa1263430:three_prime_UTR 25.0%
! ATCTTCAAATTTATCAGAAG+GGG - chr8_2:66641154-66641173 None:intergenic 25.0%
! GATCTTCAAATTTATCAGAA+GGG - chr8_2:66641155-66641174 None:intergenic 25.0%
! AGATCTTCAAATTTATCAGA+AGG - chr8_2:66641156-66641175 None:intergenic 25.0%
! AATAAATTCTTCACAATGTC+GGG - chr8_2:66641184-66641203 None:intergenic 25.0%
! GAATAAATTCTTCACAATGT+CGG - chr8_2:66641185-66641204 None:intergenic 25.0%
!! CCATAAGCAATATATGTTTT+TGG - chr8_2:66641303-66641322 None:intergenic 25.0%
! CCAAAAACATATATTGCTTA+TGG + chr8_2:66641300-66641319 Msa1263430:three_prime_UTR 25.0%
! AAAGCAATTAAATTACAGCT+CGG - chr8_2:66641407-66641426 None:intergenic 25.0%
!! AAGAAGAATGAATGGATTTA+TGG - chr8_2:66641468-66641487 None:intergenic 25.0%
! TTACTGTGTCAAATTTCAAA+TGG + chr8_2:66641793-66641812 Msa1263430:intron 25.0%
!! TCTAGTTTAATAATTGTCGT+AGG + chr8_2:66641842-66641861 Msa1263430:intron 25.0%
! CAGAGAACATATAGAAAATA+AGG + chr8_2:66642019-66642038 Msa1263430:three_prime_UTR 25.0%
! AGAACATATAGAAAATAAGG+AGG + chr8_2:66642022-66642041 Msa1263430:three_prime_UTR 25.0%
!! TGTTTCATTTTCTGTAGAAA+TGG - chr8_2:66642135-66642154 None:intergenic 25.0%
! TTCTACAGAAAATGAAACAA+TGG + chr8_2:66642136-66642155 Msa1263430:three_prime_UTR 25.0%
!! AATCAAATTCTTTGTTGGTT+AGG + chr8_2:66642336-66642355 Msa1263430:intron 25.0%
! TAAAAACATTGGTCATGAAT+TGG - chr8_2:66642370-66642389 None:intergenic 25.0%
! CCAAAGTCAAATAAAAACAT+TGG - chr8_2:66642381-66642400 None:intergenic 25.0%
!!! CCAATGTTTTTATTTGACTT+TGG + chr8_2:66642378-66642397 Msa1263430:three_prime_UTR 25.0%
! CATTAATAACTAATAACTGC+AGG - chr8_2:66642472-66642491 None:intergenic 25.0%
! GTCAGTTTCAAATAAGTTAT+TGG + chr8_2:66642865-66642884 Msa1263430:intron 25.0%
! ATAGTATTTCCTTTTCCTTC+TGG - chr8_2:66638732-66638751 None:intergenic 30.0%
AGAAGGAAAAGGAAATACTA+TGG + chr8_2:66638731-66638750 Msa1263430:CDS 30.0%
GAAGGAAAAGGAAATACTAT+GGG + chr8_2:66638732-66638751 Msa1263430:CDS 30.0%
AAATACTATGGGATGTTTGA+AGG + chr8_2:66638743-66638762 Msa1263430:CDS 30.0%
CATACCGATACAAATTCAAA+AGG + chr8_2:66638834-66638853 Msa1263430:CDS 30.0%
! ATGCCCTTTTGAATTTGTAT+CGG - chr8_2:66638841-66638860 None:intergenic 30.0%
! AAGTTTCTGTTTCTTCTTTG+AGG - chr8_2:66638940-66638959 None:intergenic 30.0%
TGGTAGAATCGATAACATAA+CGG + chr8_2:66639040-66639059 Msa1263430:intron 30.0%
TAGTTAGTCAATTCTGCTAA+GGG + chr8_2:66639313-66639332 Msa1263430:intron 30.0%
!!! GTATCTGTTTTTTGTTTTCG+TGG + chr8_2:66639341-66639360 Msa1263430:intron 30.0%
CTTCTTCTATAGACATATCA+GGG - chr8_2:66639420-66639439 None:intergenic 30.0%
ACTTCTTCTATAGACATATC+AGG - chr8_2:66639421-66639440 None:intergenic 30.0%
CATCACAGAATTTCATTAAG+GGG - chr8_2:66639539-66639558 None:intergenic 30.0%
! TGTCCTTTTACTTGAGATAA+TGG + chr8_2:66639906-66639925 Msa1263430:intron 30.0%
ATGCCATTATCTCAAGTAAA+AGG - chr8_2:66639912-66639931 None:intergenic 30.0%
AAAGCTCATAGGAACAATTT+GGG - chr8_2:66640023-66640042 None:intergenic 30.0%
GTATTTCTTTGCAACATTTG+AGG - chr8_2:66640047-66640066 None:intergenic 30.0%
TGAAGTTCCAATATGTGAAT+AGG + chr8_2:66640097-66640116 Msa1263430:three_prime_UTR 30.0%
GAAGTTCCAATATGTGAATA+GGG + chr8_2:66640098-66640117 Msa1263430:three_prime_UTR 30.0%
AAGTTCCAATATGTGAATAG+GGG + chr8_2:66640099-66640118 Msa1263430:three_prime_UTR 30.0%
AGAACATCACGAACAATAAT+TGG - chr8_2:66640468-66640487 None:intergenic 30.0%
!! TTCGTGATGTTCTAAAACAT+GGG + chr8_2:66640475-66640494 Msa1263430:three_prime_UTR 30.0%
TTCAAAAATGTCAGAAGTGA+AGG + chr8_2:66640566-66640585 Msa1263430:three_prime_UTR 30.0%
CTTTCAAACTGTAATAAAGG+GGG - chr8_2:66640624-66640643 None:intergenic 30.0%
CACTAATAGCATAGGTATTT+AGG - chr8_2:66640693-66640712 None:intergenic 30.0%
CAAGAAAACACTAATAGCAT+AGG - chr8_2:66640701-66640720 None:intergenic 30.0%
ACAGTATCAAAACACTCTTA+TGG - chr8_2:66640755-66640774 None:intergenic 30.0%
TTTATACATATACTTAGGGG+GGG - chr8_2:66640783-66640802 None:intergenic 30.0%
AAATGAGATTCTACATGTTG+TGG + chr8_2:66640920-66640939 Msa1263430:intron 30.0%
AAGAAATACTAAGATGGCAA+TGG - chr8_2:66640951-66640970 None:intergenic 30.0%
GAAGAACATATAGTAATCTC+TGG + chr8_2:66641100-66641119 Msa1263430:three_prime_UTR 30.0%
TCTTCAAATTTATCAGAAGG+GGG - chr8_2:66641153-66641172 None:intergenic 30.0%
ATAAATTCTTCACAATGTCG+GGG - chr8_2:66641183-66641202 None:intergenic 30.0%
!!! CATATCAGGTTTTAGAACAT+GGG - chr8_2:66641277-66641296 None:intergenic 30.0%
!! CATGTTCTAAAACCTGATAT+GGG + chr8_2:66641276-66641295 Msa1263430:three_prime_UTR 30.0%
TATGGGATTAAAGAAGAACT+TGG + chr8_2:66641318-66641337 Msa1263430:three_prime_UTR 30.0%
ATGGAGAAAATATTCAATGG+AGG - chr8_2:66641449-66641468 None:intergenic 30.0%
AACTTTAGATGTATTCAGGT+AGG - chr8_2:66641503-66641522 None:intergenic 30.0%
! ATACATCTAAAGTTGCACAT+TGG + chr8_2:66641509-66641528 Msa1263430:intron 30.0%
TTCCACTTTACTTGTCTAAA+AGG + chr8_2:66641579-66641598 Msa1263430:intron 30.0%
! TTCCTTTTAGACAAGTAAAG+TGG - chr8_2:66641584-66641603 None:intergenic 30.0%
! TCATTTTCTGTAGAAATGGT+AGG - chr8_2:66642131-66642150 None:intergenic 30.0%
GAAAATGAAACAATGGTAAC+AGG + chr8_2:66642143-66642162 Msa1263430:three_prime_UTR 30.0%
GCTCAAATCAAATTCTTTGT+TGG + chr8_2:66642331-66642350 Msa1263430:intron 30.0%
AGGTTTGACATATGATGATT+AGG - chr8_2:66642659-66642678 None:intergenic 30.0%
TGAAACTGACATCATAATGA+GGG - chr8_2:66642855-66642874 None:intergenic 30.0%
TTGAAACTGACATCATAATG+AGG - chr8_2:66642856-66642875 None:intergenic 30.0%
AACAATTCAGTAAAGCTTCT+AGG - chr8_2:66643005-66643024 None:intergenic 30.0%
!! CTACTTCATTTTTCCTTAGT+CGG + chr8_2:66643055-66643074 Msa1263430:three_prime_UTR 30.0%
ATTATGGTATTCATGCCAAA+AGG + chr8_2:66643290-66643309 Msa1263430:three_prime_UTR 30.0%
TCTAAATAACCACAAACACA+AGG - chr8_2:66643344-66643363 None:intergenic 30.0%
TGTGTTTGTGGTTATTTAGA+AGG + chr8_2:66643344-66643363 Msa1263430:three_prime_UTR 30.0%
TGATTTGACTGTTCTTGTCT+AGG - chr8_2:66638603-66638622 None:intergenic 35.0%
AGAGAACTTCAACATATCCT+CGG - chr8_2:66638631-66638650 None:intergenic 35.0%
! AAAAGGGCATAAAGATGTTC+TGG + chr8_2:66638851-66638870 Msa1263430:CDS 35.0%
CTCTTCTTAGATGCTAGATT+GGG - chr8_2:66638894-66638913 None:intergenic 35.0%
TCTCTTCTTAGATGCTAGAT+TGG - chr8_2:66638895-66638914 None:intergenic 35.0%
TTCTTCTTAAGACAAAGAGC+AGG + chr8_2:66639009-66639028 Msa1263430:CDS 35.0%
CTTTACTAATTGTCTCAGCA+GGG + chr8_2:66639162-66639181 Msa1263430:intron 35.0%
ATGTCATCAGTGCATGAAAA+AGG + chr8_2:66639206-66639225 Msa1263430:CDS 35.0%
CTAGTTAGTCAATTCTGCTA+AGG + chr8_2:66639312-66639331 Msa1263430:intron 35.0%
! TAATTGTTCCTTTTGAACGC+AGG - chr8_2:66639492-66639511 None:intergenic 35.0%
GCGTTCAAAAGGAACAATTA+AGG + chr8_2:66639492-66639511 Msa1263430:three_prime_UTR 35.0%
CTACTTTCAGACATCTAACA+TGG + chr8_2:66639622-66639641 Msa1263430:intron 35.0%
TTGTCATGAACAAAGTGTAG+AGG + chr8_2:66639718-66639737 Msa1263430:three_prime_UTR 35.0%
CAAAGCTCATAGGAACAATT+TGG - chr8_2:66640024-66640043 None:intergenic 35.0%
TGTTGCAAAGAAATACGTGA+TGG + chr8_2:66640051-66640070 Msa1263430:three_prime_UTR 35.0%
TAGTTGTGTCCCAAAAGAAA+TGG + chr8_2:66640227-66640246 Msa1263430:three_prime_UTR 35.0%
AGTTGTGTCCCAAAAGAAAT+GGG + chr8_2:66640228-66640247 Msa1263430:three_prime_UTR 35.0%
TCGCAGTATGCTGAAAATTT+GGG + chr8_2:66640326-66640345 Msa1263430:three_prime_UTR 35.0%
TTCCGAAAACATTGGACAAA+TGG + chr8_2:66640438-66640457 Msa1263430:three_prime_UTR 35.0%
! CACCATTTGTCCAATGTTTT+CGG - chr8_2:66640443-66640462 None:intergenic 35.0%
!! GTTCGTGATGTTCTAAAACA+TGG + chr8_2:66640474-66640493 Msa1263430:three_prime_UTR 35.0%
TTATACATATACTTAGGGGG+GGG - chr8_2:66640782-66640801 None:intergenic 35.0%
AAAGGTTTAGAAGGGTGAAT+TGG - chr8_2:66641033-66641052 None:intergenic 35.0%
GTATTAATTGCAACCTGCAA+AGG - chr8_2:66641051-66641070 None:intergenic 35.0%
!!! CCATATCAGGTTTTAGAACA+TGG - chr8_2:66641278-66641297 None:intergenic 35.0%
!! CCATGTTCTAAAACCTGATA+TGG + chr8_2:66641275-66641294 Msa1263430:three_prime_UTR 35.0%
!!! TATGTTTTTGGACCCATATC+AGG - chr8_2:66641291-66641310 None:intergenic 35.0%
GATTAAAGAAGAACTTGGCA+GGG + chr8_2:66641323-66641342 Msa1263430:three_prime_UTR 35.0%
ATTAAAGAAGAACTTGGCAG+GGG + chr8_2:66641324-66641343 Msa1263430:three_prime_UTR 35.0%
AAATATTCAATGGAGGAGGA+TGG - chr8_2:66641442-66641461 None:intergenic 35.0%
GAGAAAATATTCAATGGAGG+AGG - chr8_2:66641446-66641465 None:intergenic 35.0%
CAGAGAGAAAGAAGAATGAA+TGG - chr8_2:66641476-66641495 None:intergenic 35.0%
GTGCAACTTTAGATGTATTC+AGG - chr8_2:66641507-66641526 None:intergenic 35.0%
! TGTGTCACTGTATTGTAATG+TGG + chr8_2:66641636-66641655 Msa1263430:intron 35.0%
! AGAAGTGCATACTATTCTCT+GGG - chr8_2:66641679-66641698 None:intergenic 35.0%
!!! GAATATTTTGACCCATACAG+CGG + chr8_2:66641866-66641885 Msa1263430:three_prime_UTR 35.0%
TAATAATACCTCCGCTGTAT+GGG - chr8_2:66641880-66641899 None:intergenic 35.0%
TTAATAATACCTCCGCTGTA+TGG - chr8_2:66641881-66641900 None:intergenic 35.0%
!! CGGAGGTATTATTAACTGAT+AGG + chr8_2:66641886-66641905 Msa1263430:three_prime_UTR 35.0%
TCTGTGTGCTTCTTTCAAAT+TGG - chr8_2:66641928-66641947 None:intergenic 35.0%
GGTATTAGAGTGCAACAATA+TGG + chr8_2:66642043-66642062 Msa1263430:three_prime_UTR 35.0%
!! ATATCTCCACTGATTTCGAT+AGG - chr8_2:66642077-66642096 None:intergenic 35.0%
TATCTTTCACAATGTGTCTG+AGG + chr8_2:66642094-66642113 Msa1263430:three_prime_UTR 35.0%
ATCTTTCACAATGTGTCTGA+GGG + chr8_2:66642095-66642114 Msa1263430:three_prime_UTR 35.0%
GAAAACACTCGAAAGAATTC+AGG + chr8_2:66642225-66642244 Msa1263430:three_prime_UTR 35.0%
CATTATAATACCTGCTCAAC+CGG - chr8_2:66642266-66642285 None:intergenic 35.0%
! TAATGTGAATCTCGGCTTTT+AGG + chr8_2:66642487-66642506 Msa1263430:intron 35.0%
! AGTTTTTGCTCAAAAGTCCA+CGG - chr8_2:66642520-66642539 None:intergenic 35.0%
! TGGACTTTTGAGCAAAAACT+TGG + chr8_2:66642520-66642539 Msa1263430:three_prime_UTR 35.0%
! GGACTTTTGAGCAAAAACTT+GGG + chr8_2:66642521-66642540 Msa1263430:three_prime_UTR 35.0%
! GACTTTTGAGCAAAAACTTG+GGG + chr8_2:66642522-66642541 Msa1263430:three_prime_UTR 35.0%
! TAAGATTCCTGACTTGATGT+GGG - chr8_2:66642573-66642592 None:intergenic 35.0%
! TTAAGATTCCTGACTTGATG+TGG - chr8_2:66642574-66642593 None:intergenic 35.0%
ACATCAAGTCAGGAATCTTA+AGG + chr8_2:66642573-66642592 Msa1263430:three_prime_UTR 35.0%
! ACACTCATGTACATTTTCTG+GGG - chr8_2:66642718-66642737 None:intergenic 35.0%
! GACACTCATGTACATTTTCT+GGG - chr8_2:66642719-66642738 None:intergenic 35.0%
! AGACACTCATGTACATTTTC+TGG - chr8_2:66642720-66642739 None:intergenic 35.0%
!! TCTCTAGCTTTGTGTTTCTT+GGG - chr8_2:66642771-66642790 None:intergenic 35.0%
!! TTCTCTAGCTTTGTGTTTCT+TGG - chr8_2:66642772-66642791 None:intergenic 35.0%
AGCTAGAGAAGATAAACTTG+AGG + chr8_2:66642782-66642801 Msa1263430:three_prime_UTR 35.0%
GAAACTGACATCATAATGAG+GGG - chr8_2:66642854-66642873 None:intergenic 35.0%
TTTACTGAATTGTTCCTGAC+TGG + chr8_2:66643011-66643030 Msa1263430:three_prime_UTR 35.0%
AGTTTGAATGCTTCATTGAG+AGG + chr8_2:66643131-66643150 Msa1263430:three_prime_UTR 35.0%
!! GCTTCATTGAGAGGTTTTAA+TGG + chr8_2:66643140-66643159 Msa1263430:three_prime_UTR 35.0%
TTCATGCCAAAAGGAAATAC+AGG + chr8_2:66643299-66643318 Msa1263430:three_prime_UTR 35.0%
! TGATTGCCTGTATTTCCTTT+TGG - chr8_2:66643308-66643327 None:intergenic 35.0%
GTTATTTAGAAGGATGCAAG+AGG + chr8_2:66643354-66643373 Msa1263430:three_prime_UTR 35.0%
ACAGTCAAATCAACATTCCG+AGG + chr8_2:66638611-66638630 Msa1263430:CDS 40.0%
GAGGATATGTTGAAGTTCTC+TGG + chr8_2:66638630-66638649 Msa1263430:CDS 40.0%
! GTGTGGTGGTAATGAGAAAT+CGG + chr8_2:66638704-66638723 Msa1263430:CDS 40.0%
AATGAGAAATCGGAACCAGA+AGG + chr8_2:66638714-66638733 Msa1263430:CDS 40.0%
AAATCGGAACCAGAAGGAAA+AGG + chr8_2:66638720-66638739 Msa1263430:CDS 40.0%
TACTATGGGATGTTTGAAGG+AGG + chr8_2:66638746-66638765 Msa1263430:CDS 40.0%
CTAGCATCTAAGAAGAGAGA+TGG + chr8_2:66638897-66638916 Msa1263430:CDS 40.0%
!!! GCTTTTGAAGTGCAGGAATT+AGG - chr8_2:66639084-66639103 None:intergenic 40.0%
!!! GGTTTTAGCTTTTGAAGTGC+AGG - chr8_2:66639091-66639110 None:intergenic 40.0%
GCTTTACTAATTGTCTCAGC+AGG + chr8_2:66639161-66639180 Msa1263430:intron 40.0%
! AGGGTGTTCAACAAAATACC+CGG + chr8_2:66639181-66639200 Msa1263430:intron 40.0%
! TCATGCACTGATGACATTTC+CGG - chr8_2:66639203-66639222 None:intergenic 40.0%
GTATGCGATGCATCAATCAA+TGG + chr8_2:66639274-66639293 Msa1263430:three_prime_UTR 40.0%
CGATGCATCAATCAATGGTA+TGG + chr8_2:66639279-66639298 Msa1263430:intron 40.0%
AATGTTTGCCTGCGTTCAAA+AGG + chr8_2:66639481-66639500 Msa1263430:three_prime_UTR 40.0%
TTGTCACTACAGAGACTTTG+TGG - chr8_2:66639866-66639885 None:intergenic 40.0%
ACAAAGTCTCTGTAGTGACA+AGG + chr8_2:66639865-66639884 Msa1263430:three_prime_UTR 40.0%
AATTTGGGCAGATTCGATGA+AGG - chr8_2:66640008-66640027 None:intergenic 40.0%
! ACATTTGAGGCAAAGCTCAT+AGG - chr8_2:66640034-66640053 None:intergenic 40.0%
ATTGGAACTTCATCTCAGCT+CGG - chr8_2:66640089-66640108 None:intergenic 40.0%
CATAGCCCCTATTCACATAT+TGG - chr8_2:66640107-66640126 None:intergenic 40.0%
AGGGGCTATGATTATATGCA+TGG + chr8_2:66640117-66640136 Msa1263430:three_prime_UTR 40.0%
GGCTATGATTATATGCATGG+TGG + chr8_2:66640120-66640139 Msa1263430:three_prime_UTR 40.0%
AATCACAAGACACTGGTAGA+GGG - chr8_2:66640149-66640168 None:intergenic 40.0%
AAATCACAAGACACTGGTAG+AGG - chr8_2:66640150-66640169 None:intergenic 40.0%
GTCTCTAAATCACAAGACAC+TGG - chr8_2:66640156-66640175 None:intergenic 40.0%
GTTGTGTCCCAAAAGAAATG+GGG + chr8_2:66640229-66640248 Msa1263430:three_prime_UTR 40.0%
TTGTGTCCCAAAAGAAATGG+GGG + chr8_2:66640230-66640249 Msa1263430:three_prime_UTR 40.0%
CTCGCAGTATGCTGAAAATT+TGG + chr8_2:66640325-66640344 Msa1263430:three_prime_UTR 40.0%
GAAGAAGATGTATCGAGCTA+TGG + chr8_2:66640375-66640394 Msa1263430:three_prime_UTR 40.0%
TGTTGCTCTTCCGAAAACAT+TGG + chr8_2:66640430-66640449 Msa1263430:three_prime_UTR 40.0%
!! GATGTTCTAAAACATGGGAC+AGG + chr8_2:66640480-66640499 Msa1263430:three_prime_UTR 40.0%
ACAATTAGCCATGCAATCGA+TGG - chr8_2:66640592-66640611 None:intergenic 40.0%
TTGTGTGTCAGTGTGTGTAT+AGG + chr8_2:66640822-66640841 Msa1263430:intron 40.0%
TGTGTGTCAGTGTGTGTATA+GGG + chr8_2:66640823-66640842 Msa1263430:intron 40.0%
! TTGTATTTTGTGCAGCATGC+CGG + chr8_2:66640999-66641018 Msa1263430:intron 40.0%
GGGTGAATTGGTTAGAATTC+CGG - chr8_2:66641021-66641040 None:intergenic 40.0%
CAACCTGCAAAGGTTTAGAA+GGG - chr8_2:66641041-66641060 None:intergenic 40.0%
!!! TCTTTTAGCTTCAGCATCTC+TGG - chr8_2:66641126-66641145 None:intergenic 40.0%
AGATGCTGAAGCTAAAAGAC+TGG + chr8_2:66641127-66641146 Msa1263430:three_prime_UTR 40.0%
GGATCAGTATACGGTTGAAA+TGG - chr8_2:66641216-66641235 None:intergenic 40.0%
TTCAACCGTATACTGATCCT+CGG + chr8_2:66641217-66641236 Msa1263430:three_prime_UTR 40.0%
GGATTAAAGAAGAACTTGGC+AGG + chr8_2:66641322-66641341 Msa1263430:three_prime_UTR 40.0%
TCACTGTGATATGTCAGATG+CGG + chr8_2:66641365-66641384 Msa1263430:three_prime_UTR 40.0%
! GAGAAGTGCATACTATTCTC+TGG - chr8_2:66641680-66641699 None:intergenic 40.0%
ACAACAAATGCACATCGCAT+GGG - chr8_2:66641759-66641778 None:intergenic 40.0%
AACAACAAATGCACATCGCA+TGG - chr8_2:66641760-66641779 None:intergenic 40.0%
ATATGTTCTCTGTTGTCGCA+AGG - chr8_2:66642011-66642030 None:intergenic 40.0%
TCTTTCACAATGTGTCTGAG+GGG + chr8_2:66642096-66642115 Msa1263430:three_prime_UTR 40.0%
TCTCCGAAATATATCCCACA+GGG - chr8_2:66642174-66642193 None:intergenic 40.0%
AGAGAGGACACTGAAAAGTT+AGG + chr8_2:66642191-66642210 Msa1263430:three_prime_UTR 40.0%
CAGGCATACTTATTGTTCAC+CGG + chr8_2:66642244-66642263 Msa1263430:three_prime_UTR 40.0%
AAGAAGTTGAAGGAGGAGTT+TGG + chr8_2:66642409-66642428 Msa1263430:three_prime_UTR 40.0%
! TTTTGAGCAAAAACTTGGGG+AGG + chr8_2:66642525-66642544 Msa1263430:three_prime_UTR 40.0%
GTCTTTGACAGCTTGATCAA+TGG - chr8_2:66642983-66643002 None:intergenic 40.0%
ATACAGTGTCCTTGTGTTTG+TGG + chr8_2:66643332-66643351 Msa1263430:three_prime_UTR 40.0%
ATTTAGAAGGATGCAAGAGG+TGG + chr8_2:66643357-66643376 Msa1263430:three_prime_UTR 40.0%
! TCTGGATGCGCAAAAGCTTT+TGG + chr8_2:66638648-66638667 Msa1263430:CDS 45.0%
GCTGAAGAATTTCACGAGTG+TGG + chr8_2:66638687-66638706 Msa1263430:CDS 45.0%
GAAGAATTTCACGAGTGTGG+TGG + chr8_2:66638690-66638709 Msa1263430:CDS 45.0%
! TTTGAGGCAGCATGCTTCTT+TGG - chr8_2:66638924-66638943 None:intergenic 45.0%
! CATGCACTGATGACATTTCC+GGG - chr8_2:66639202-66639221 None:intergenic 45.0%
GTGACAAGGAACGTGTCTAT+TGG + chr8_2:66639879-66639898 Msa1263430:three_prime_UTR 45.0%
TTGGAACTTCATCTCAGCTC+GGG - chr8_2:66640088-66640107 None:intergenic 45.0%
TATCTACCGAGTGTAATGCC+AGG + chr8_2:66640190-66640209 Msa1263430:three_prime_UTR 45.0%
ATCACTCCTGGCATTACACT+CGG - chr8_2:66640199-66640218 None:intergenic 45.0%
ACTAACACTTCCATCACTCC+TGG - chr8_2:66640211-66640230 None:intergenic 45.0%
TGTGTCCCAAAAGAAATGGG+GGG + chr8_2:66640231-66640250 Msa1263430:three_prime_UTR 45.0%
! CACAACCCCCCATTTCTTTT+GGG - chr8_2:66640239-66640258 None:intergenic 45.0%
! GCGAGCATTGTGTGATAATG+TGG + chr8_2:66640530-66640549 Msa1263430:three_prime_UTR 45.0%
CGATTGCATGGCTAATTGTG+AGG + chr8_2:66640593-66640612 Msa1263430:three_prime_UTR 45.0%
GCATGGCTAATTGTGAGGTT+TGG + chr8_2:66640598-66640617 Msa1263430:intron 45.0%
TCACCCTTCTAAACCTTTGC+AGG + chr8_2:66641035-66641054 Msa1263430:intron 45.0%
GCAACCTGCAAAGGTTTAGA+AGG - chr8_2:66641042-66641061 None:intergenic 45.0%
TCAACCGTATACTGATCCTC+GGG + chr8_2:66641218-66641237 Msa1263430:three_prime_UTR 45.0%
!!! TCAGGTTTTAGAACATGGGC+TGG - chr8_2:66641273-66641292 None:intergenic 45.0%
ATGCACTTCTCTTGCTACAG+AGG + chr8_2:66641689-66641708 Msa1263430:intron 45.0%
TGCACTTCTCTTGCTACAGA+GGG + chr8_2:66641690-66641709 Msa1263430:intron 45.0%
!!! TATTTTGACCCATACAGCGG+AGG + chr8_2:66641869-66641888 Msa1263430:three_prime_UTR 45.0%
AGGGCTGATGTATGCCTAAA+TGG + chr8_2:66641981-66642000 Msa1263430:three_prime_UTR 45.0%
AACCGTCCTATCGAAATCAG+TGG + chr8_2:66642068-66642087 Msa1263430:three_prime_UTR 45.0%
!! CTCCACTGATTTCGATAGGA+CGG - chr8_2:66642073-66642092 None:intergenic 45.0%
CTTTCACAATGTGTCTGAGG+GGG + chr8_2:66642097-66642116 Msa1263430:three_prime_UTR 45.0%
GTGCCCTGTGGGATATATTT+CGG + chr8_2:66642168-66642187 Msa1263430:three_prime_UTR 45.0%
CTCTCCGAAATATATCCCAC+AGG - chr8_2:66642175-66642194 None:intergenic 45.0%
GTGGGATATATTTCGGAGAG+AGG + chr8_2:66642175-66642194 Msa1263430:three_prime_UTR 45.0%
! TTATTGTTCACCGGTTGAGC+AGG + chr8_2:66642253-66642272 Msa1263430:three_prime_UTR 45.0%
GGAGCACAAGAAGAAGTTGA+AGG + chr8_2:66642399-66642418 Msa1263430:three_prime_UTR 45.0%
GCACAAGAAGAAGTTGAAGG+AGG + chr8_2:66642402-66642421 Msa1263430:three_prime_UTR 45.0%
GAGGCAGTATTTATTCCTGC+TGG + chr8_2:66642544-66642563 Msa1263430:three_prime_UTR 45.0%
TGTGTTTCTTGGGAAGCTGA+CGG - chr8_2:66642761-66642780 None:intergenic 45.0%
TGACATCATAATGAGGGGAG+TGG - chr8_2:66642849-66642868 None:intergenic 45.0%
TGGAACTTCATCTCAGCTCG+GGG - chr8_2:66640087-66640106 None:intergenic 50.0%
GAGTGTAATGCCAGGAGTGA+TGG + chr8_2:66640198-66640217 Msa1263430:three_prime_UTR 50.0%
! CCACAACCCCCCATTTCTTT+TGG - chr8_2:66640240-66640259 None:intergenic 50.0%
CCAAAAGAAATGGGGGGTTG+TGG + chr8_2:66640237-66640256 Msa1263430:three_prime_UTR 50.0%
GGGTTGTGGTAGTTCTCTGT+TGG + chr8_2:66640251-66640270 Msa1263430:three_prime_UTR 50.0%
GTAGTTCTCTGTTGGAGCTG+AGG + chr8_2:66640259-66640278 Msa1263430:three_prime_UTR 50.0%
! ACTGCGAGCTTTGTCTTCCA+AGG - chr8_2:66640313-66640332 None:intergenic 50.0%
AATGCTCGCCACATGACCAT+CGG - chr8_2:66640519-66640538 None:intergenic 50.0%
! AGTGAAGGCCATCGATTGCA+TGG + chr8_2:66640581-66640600 Msa1263430:three_prime_UTR 50.0%
GCACTTCTCTTGCTACAGAG+GGG + chr8_2:66641691-66641710 Msa1263430:intron 50.0%
CTTGCTACAGAGGGGAGATA+TGG + chr8_2:66641699-66641718 Msa1263430:intron 50.0%
TGTCGCAAGGTCGACCATTT+AGG - chr8_2:66641998-66642017 None:intergenic 50.0%
!! GGCTTTTAGGTGTAGAACCG+TGG + chr8_2:66642500-66642519 Msa1263430:intron 50.0%
AACCTTGCAGTCGTGCACAA+AGG + chr8_2:66642674-66642693 Msa1263430:intron 50.0%
AACCTTTGTGCACGACTGCA+AGG - chr8_2:66642679-66642698 None:intergenic 50.0%
CAAGCAACATTCAGCCAGTC+AGG - chr8_2:66643028-66643047 None:intergenic 50.0%
TGTTTACACTCCCAGCAACC+TGG - chr8_2:66643088-66643107 None:intergenic 50.0%
! CTGGGAGTGTAAACAGCGTT+CGG + chr8_2:66643093-66643112 Msa1263430:three_prime_UTR 50.0%
! TGGGAGTGTAAACAGCGTTC+GGG + chr8_2:66643094-66643113 Msa1263430:three_prime_UTR 50.0%
ACAAAGAGCAGGAGCAGAGC+TGG + chr8_2:66639020-66639039 Msa1263430:CDS 55.0%
TGAGGCGCATTCTCCCACAT+GGG + chr8_2:66640277-66640296 Msa1263430:three_prime_UTR 55.0%
AGGCAGACATCCACCCATGT+GGG - chr8_2:66640293-66640312 None:intergenic 55.0%
AAGGCAGACATCCACCCATG+TGG - chr8_2:66640294-66640313 None:intergenic 55.0%
ACATGGGTGGATGTCTGCCT+TGG + chr8_2:66640293-66640312 Msa1263430:three_prime_UTR 55.0%
AACATGGGACAGGTCTGAGC+TGG + chr8_2:66640490-66640509 Msa1263430:three_prime_UTR 55.0%
ACATGGGACAGGTCTGAGCT+GGG + chr8_2:66640491-66640510 Msa1263430:three_prime_UTR 55.0%
CCAGCCCGAGGATCAGTATA+CGG - chr8_2:66641225-66641244 None:intergenic 55.0%
AGATTGAGAGTTCCAGCCCG+AGG - chr8_2:66641237-66641256 None:intergenic 55.0%
! TCGGGCTGGAACTCTCAATC+TGG + chr8_2:66641236-66641255 Msa1263430:three_prime_UTR 55.0%
AGAACACCGTGCTCCAGAGA+GGG + chr8_2:66641962-66641981 Msa1263430:three_prime_UTR 55.0%
AGGCATACATCAGCCCTCTC+TGG - chr8_2:66641978-66641997 None:intergenic 55.0%
TGGTAACAGGTAGTGCCCTG+TGG + chr8_2:66642156-66642175 Msa1263430:three_prime_UTR 55.0%
GGTAACAGGTAGTGCCCTGT+GGG + chr8_2:66642157-66642176 Msa1263430:three_prime_UTR 55.0%
ACTTGATGTGGGCATCCAGC+AGG - chr8_2:66642562-66642581 None:intergenic 55.0%
CTGGATGCCCACATCAAGTC+AGG + chr8_2:66642563-66642582 Msa1263430:three_prime_UTR 55.0%
TCCTTAGTCGGTGATCCTCC+AGG + chr8_2:66643067-66643086 Msa1263430:three_prime_UTR 55.0%
! ACCTGGAGGATCACCGACTA+AGG - chr8_2:66643071-66643090 None:intergenic 55.0%
TTACACTCCCAGCAACCTGG+AGG - chr8_2:66643085-66643104 None:intergenic 55.0%
CTGAGGCGCATTCTCCCACA+TGG + chr8_2:66640276-66640295 Msa1263430:three_prime_UTR 60.0%
CCGTATACTGATCCTCGGGC+TGG + chr8_2:66641222-66641241 Msa1263430:three_prime_UTR 60.0%
GAGAACACCGTGCTCCAGAG+AGG + chr8_2:66641961-66641980 Msa1263430:three_prime_UTR 60.0%
!! CATCAGCCCTCTCTGGAGCA+CGG - chr8_2:66641971-66641990 None:intergenic 60.0%
TCGGTGATCCTCCAGGTTGC+TGG + chr8_2:66643074-66643093 Msa1263430:three_prime_UTR 60.0%
CGGTGATCCTCCAGGTTGCT+GGG + chr8_2:66643075-66643094 Msa1263430:three_prime_UTR 60.0%
GGCGCATTCTCCCACATGGG+TGG + chr8_2:66640280-66640299 Msa1263430:three_prime_UTR 65.0%
AGGTCTGAGCTGGGAGCCGA+TGG + chr8_2:66640500-66640519 Msa1263430:three_prime_UTR 65.0%
GCTGGGAGCCGATGGTCATG+TGG + chr8_2:66640508-66640527 Msa1263430:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 66638580 66643428 66638580 ID=Msa1263430;Name=Msa1263430
chr8_2 mRNA 66638580 66643428 66638580 ID=Msa1263430-mRNA-1;Parent=Msa1263430;Name=Msa1263430-mRNA-1;_AED=0.11;_eAED=0.11;_QI=5|0.83|0.84|1|0.83|0.84|13|2461|165
chr8_2 exon 66638580 66638773 66638580 ID=Msa1263430-mRNA-1:exon:21745;Parent=Msa1263430-mRNA-1
chr8_2 exon 66638807 66639041 66638807 ID=Msa1263430-mRNA-1:exon:21746;Parent=Msa1263430-mRNA-1
chr8_2 exon 66639183 66639295 66639183 ID=Msa1263430-mRNA-1:exon:21747;Parent=Msa1263430-mRNA-1
chr8_2 exon 66639414 66639513 66639414 ID=Msa1263430-mRNA-1:exon:21748;Parent=Msa1263430-mRNA-1
chr8_2 exon 66639632 66639764 66639632 ID=Msa1263430-mRNA-1:exon:21749;Parent=Msa1263430-mRNA-1
chr8_2 exon 66639840 66639900 66639840 ID=Msa1263430-mRNA-1:exon:21750;Parent=Msa1263430-mRNA-1
chr8_2 exon 66639978 66640614 66639978 ID=Msa1263430-mRNA-1:exon:21751;Parent=Msa1263430-mRNA-1
chr8_2 exon 66641057 66641386 66641057 ID=Msa1263430-mRNA-1:exon:21752;Parent=Msa1263430-mRNA-1
chr8_2 exon 66641864 66642274 66641864 ID=Msa1263430-mRNA-1:exon:21753;Parent=Msa1263430-mRNA-1
chr8_2 exon 66642358 66642430 66642358 ID=Msa1263430-mRNA-1:exon:21754;Parent=Msa1263430-mRNA-1
chr8_2 exon 66642509 66642594 66642509 ID=Msa1263430-mRNA-1:exon:21755;Parent=Msa1263430-mRNA-1
chr8_2 exon 66642684 66642803 66642684 ID=Msa1263430-mRNA-1:exon:21756;Parent=Msa1263430-mRNA-1
chr8_2 exon 66642958 66643428 66642958 ID=Msa1263430-mRNA-1:exon:21757;Parent=Msa1263430-mRNA-1
chr8_2 five_prime_UTR 66638580 66638584 66638580 ID=Msa1263430-mRNA-1:five_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 CDS 66638585 66638773 66638585 ID=Msa1263430-mRNA-1:cds;Parent=Msa1263430-mRNA-1
chr8_2 CDS 66638807 66639041 66638807 ID=Msa1263430-mRNA-1:cds;Parent=Msa1263430-mRNA-1
chr8_2 CDS 66639183 66639256 66639183 ID=Msa1263430-mRNA-1:cds;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66639257 66639295 66639257 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66639414 66639513 66639414 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66639632 66639764 66639632 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66639840 66639900 66639840 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66639978 66640614 66639978 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66641057 66641386 66641057 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66641864 66642274 66641864 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66642358 66642430 66642358 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66642509 66642594 66642509 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66642684 66642803 66642684 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
chr8_2 three_prime_UTR 66642958 66643428 66642958 ID=Msa1263430-mRNA-1:three_prime_utr;Parent=Msa1263430-mRNA-1
Gene Sequence

>Msa1263430

ATGGAGGTAGTAGTTCCTAGACAAGAACAGTCAAATCAACATTCCGAGGATATGTTGAAGTTCTCTGGATGCGCAAAAGCTTTTGGAAATTCAAAGAGAAAGGCTGAAGAATTTCACGAGTGTGGTGGTAATGAGAAATCGGAACCAGAAGGAAAAGGAAATACTATGGGATGTTTGAAGGAGGATACAAGAAGATTTCAAGAATATCATACACATCATACCGATACAAATTCAAAAGGGCATAAAGATGTTCTGGAATGTTTAAAAGAGACGCCCAATCTAGCATCTAAGAAGAGAGATGGACCAAAGAAGCATGCTGCCTCAAAGAAGAAACAGAAACTTGAAGATGAACTCTTGCTTGACGAACTTGAACAAGATGAAGAAATGTTTTTTCTTCTTAAGACAAAGAGCAGGAGCAGAGCTGGGTGTTCAACAAAATACCCGGAAATGTCATCAGTGCATGAAAAAGGAAAGAACATCTTTTGTGCCTTGCACTAA
Protein sequence

>Msa1263430

MEVVVPRQEQSNQHSEDMLKFSGCAKAFGNSKRKAEEFHECGGNEKSEPEGKGNTMGCLKEDTRRFQEYHTHHTDTNSKGHKDVLECLKETPNLASKKRDGPKKHAASKKKQKLEDELLLDELEQDEEMFFLLKTKSRSRAGCSTKYPEMSSVHEKGKNIFCALH*